1
|
Gessler A, Wieloch T, Saurer M, Lehmann MM, Werner RA, Kammerer B. The marriage between stable isotope ecology and plant metabolomics - new perspectives for metabolic flux analysis and the interpretation of ecological archives. THE NEW PHYTOLOGIST 2024. [PMID: 39021246 DOI: 10.1111/nph.19973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Accepted: 07/01/2024] [Indexed: 07/20/2024]
Abstract
Even though they share many thematical overlaps, plant metabolomics and stable isotope ecology have been rather separate fields mainly due to different mass spectrometry demands. New high-resolution bioanalytical mass spectrometers are now not only offering high-throughput metabolite identification but are also suitable for compound- and intramolecular position-specific isotope analysis in the natural isotope abundance range. In plant metabolomics, label-free metabolic pathway and metabolic flux analysis might become possible when applying this new technology. This is because changes in the commitment of substrates to particular metabolic pathways and the activation or deactivation of others alter enzyme-specific isotope effects. This leads to differences in intramolecular and compound-specific isotope compositions. In plant isotope ecology, position-specific isotope analysis in plant archives informed by metabolic pathway analysis could be used to reconstruct and separate environmental impacts on complex metabolic processes. A technology-driven linkage between the two disciplines could allow to extract information on environment-metabolism interaction from plant archives such as tree rings but also within ecosystems. This would contribute to a holistic understanding of how plants react to environmental drivers, thus also providing helpful information on the trajectories of the vegetation under the conditions to come.
Collapse
Affiliation(s)
- Arthur Gessler
- Institute of Terrestrial Ecosystems, ETH Zurich, 8092, Zurich, Switzerland
- Ecosystem Ecology, Swiss Federal Research Institute WSL, 8903, Birmensdorf, Switzerland
| | - Thomas Wieloch
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, 91125, USA
- Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå Plant Science Centre, 90736, Umeå, Sweden
| | - Matthias Saurer
- Ecosystem Ecology, Swiss Federal Research Institute WSL, 8903, Birmensdorf, Switzerland
| | - Marco M Lehmann
- Ecosystem Ecology, Swiss Federal Research Institute WSL, 8903, Birmensdorf, Switzerland
- Forest Soils and Biogeochemistry, Swiss Federal Research Institute WSL, 8903, Birmensdorf, Switzerland
| | - Roland A Werner
- Institute of Agricultural Sciences, ETH Zurich, 8092, Zurich, Switzerland
| | - Bernd Kammerer
- Core Competence Metabolomics, Albert-Ludwigs-University Freiburg, 79104, Freiburg, Germany
| |
Collapse
|
2
|
Lehmann MM, Schuler P, Werner RA, Saurer M, Wiesenberg GLB, Cormier MA. Biochemical and biophysical drivers of the hydrogen isotopic composition of carbohydrates and acetogenic lipids. SCIENCE ADVANCES 2024; 10:eadl3591. [PMID: 38985863 PMCID: PMC11235168 DOI: 10.1126/sciadv.adl3591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 06/05/2024] [Indexed: 07/12/2024]
Abstract
The hydrogen isotopic composition (δ2H) of plant compounds is increasingly used as a hydroclimatic proxy; however, the interpretation of δ2H values is hampered by potential coeffecting biochemical and biophysical processes. Here, we studied δ2H values of water and carbohydrates in leaves and roots, and of leaf n-alkanes, in two distinct tobacco (Nicotiana sylvestris) experiments. Large differences in plant performance and biochemistry resulted from (a) soil fertilization with varying nitrogen (N) species ratios and (b) knockout-induced starch deficiency. We observed a strong 2H-enrichment in sugars and starch with a decreasing performance induced by increasing NO3-/NH4+ ratios and starch deficiency, as well as from leaves to roots. However, δ2H values of cellulose and n-alkanes were less affected. We show that relative concentrations of sugars and starch, interlinked with leaf gas exchange, shape δ2H values of carbohydrates. We thus provide insights into drivers of hydrogen isotopic composition of plant compounds and into the mechanistic modeling of plant cellulose δ2H values.
Collapse
Affiliation(s)
- Marco M Lehmann
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zuercherstrasse 111, 8903 Birmensdorf, Switzerland
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zuercherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Philipp Schuler
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zuercherstrasse 111, 8903 Birmensdorf, Switzerland
- School of Architecture, Civil and Environmental Engineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Roland A Werner
- D-USYS-Department of Environmental Systems Science, ETH Zurich, Universitaetstrasse 2, 8092 Zurich, Switzerland
| | - Matthias Saurer
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zuercherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Guido L B Wiesenberg
- Department of Geography, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland
| | - Marc-André Cormier
- Department of Earth Sciences, University of Oxford, South Parks Road, Oxford OX1 3AN, UK
| |
Collapse
|
3
|
Pan Y, Li F, Lin W, Zhou Y, Song X. Quantifying isotope parameters associated with carbonyl-water oxygen exchange during sucrose translocation in tree phloem. THE NEW PHYTOLOGIST 2024; 242:975-987. [PMID: 38439696 DOI: 10.1111/nph.19654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Accepted: 02/19/2024] [Indexed: 03/06/2024]
Abstract
Stable oxygen isotope ratio of tree-ring α-cellulose (δ18Ocel) yields valuable information on many aspects of tree-climate interactions. However, our current understanding of the mechanistic controls on δ18Ocel is incomplete, with a knowledge gap existent regarding the fractionation effect characterizing carbonyl-water oxygen exchange during sucrose translocation from leaf to phloem. To address this insufficiency, we set up an experimental system integrating a vapor 18O-labeling feature to manipulate leaf-level isotopic signatures in tree saplings enclosed within whole-canopy gas-exchange cuvettes. We applied this experimental system to three different tree species to determine their respective relationships between 18O enrichment of sucrose in leaf lamina (Δ18Ol_suc) and petiole phloem (Δ18Ophl_suc) under environmentally/physiologically stable conditions. Based on the determined Δ18Ophl_suc-Δ18Ol_suc relationships, we estimated that on average, at least 25% of the oxygen atoms in sucrose undergo isotopic exchange with water along the leaf-to-phloem translocation path and that the biochemical fractionation factor accounting for such exchange is c. 34‰, markedly higher than the conventionally assumed value of 27‰. Our study represents a significant step toward quantitative elucidation of the oxygen isotope dynamics during sucrose translocation in trees. This has important implications with respect to improving the δ18Ocel model and its related applications in paleoclimatic and ecophysiological contexts.
Collapse
Affiliation(s)
- Yonghui Pan
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, 511458, China
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060, China
| | - Fang Li
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060, China
- Huzhou Vocational & Technical College, Huzhou, 313000, China
| | - Wen Lin
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730000, China
| | - Youping Zhou
- Department of Marine Science and Technology, Southern University of Science and Technology, Shenzhen, 518055, China
| | - Xin Song
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060, China
| |
Collapse
|
4
|
Vitali V, Schuler P, Holloway-Phillips M, D'Odorico P, Guidi C, Klesse S, Lehmann MM, Meusburger K, Schaub M, Zweifel R, Gessler A, Saurer M. Finding balance: Tree-ring isotopes differentiate between acclimation and stress-induced imbalance in a long-term irrigation experiment. GLOBAL CHANGE BIOLOGY 2024; 30:e17237. [PMID: 38488024 DOI: 10.1111/gcb.17237] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Revised: 02/05/2024] [Accepted: 02/09/2024] [Indexed: 03/19/2024]
Abstract
Scots pine (Pinus sylvestris L.) is a common European tree species, and understanding its acclimation to the rapidly changing climate through physiological, biochemical or structural adjustments is vital for predicting future growth. We investigated a long-term irrigation experiment at a naturally dry forest in Switzerland, comparing Scots pine trees that have been continuously irrigated for 17 years (irrigated) with those for which irrigation was interrupted after 10 years (stop) and non-irrigated trees (control), using tree growth, xylogenesis, wood anatomy, and carbon, oxygen and hydrogen stable isotope measurements in the water, sugars and cellulose of plant tissues. The dendrochronological analyses highlighted three distinct acclimation phases to the treatments: irrigated trees experienced (i) a significant growth increase in the first 4 years of treatment, (ii) high growth rates but with a declining trend in the following 8 years and finally (iii) a regression to pre-irrigation growth rates, suggesting the development of a new growth limitation (i.e. acclimation). The introduction of the stop treatment resulted in further growth reductions to below-control levels during the third phase. Irrigated trees showed longer growth periods and lower tree-ring δ13 C values, reflecting lower stomatal restrictions than control trees. Their strong tree-ring δ18 O and δ2 H (O-H) relationship reflected the hydrological signature similarly to the control. On the contrary, the stop trees had lower growth rates, conservative wood anatomical traits, and a weak O-H relationship, indicating a physiological imbalance. Tree vitality (identified by crown transparency) significantly modulated growth, wood anatomical traits and tree-ring δ13 C, with low-vitality trees of all treatments performing similarly regardless of water availability. We thus provide quantitative indicators for assessing physiological imbalance and tree acclimation after environmental stresses. We also show that tree vitality is crucial in shaping such responses. These findings are fundamental for the early assessment of ecosystem imbalances and decline under climate change.
Collapse
Affiliation(s)
- Valentina Vitali
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Philipp Schuler
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | | | - Petra D'Odorico
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Claudia Guidi
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Stefan Klesse
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Marco M Lehmann
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Katrin Meusburger
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Marcus Schaub
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Roman Zweifel
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Arthur Gessler
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
- Institute of Terrestrial Ecosystems, ETH Zurich, Zurich, Switzerland
| | - Matthias Saurer
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| |
Collapse
|
5
|
Li Y, Eugster W, Riedl A, Lehmann MM, Aemisegger F, Buchmann N. Dew benefits on alpine grasslands are cancelled out by combined heatwave and drought stress. FRONTIERS IN PLANT SCIENCE 2023; 14:1136037. [PMID: 37229137 PMCID: PMC10203623 DOI: 10.3389/fpls.2023.1136037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/02/2023] [Accepted: 04/04/2023] [Indexed: 05/27/2023]
Abstract
Increasing frequencies of heatwaves combined with simultaneous drought stress in Europe threaten the ecosystem water and carbon budgets of alpine grasslands. Dew as an additional water source can promote ecosystem carbon assimilation. It is known that grassland ecosystems keep high evapotranspiration as long as soil water is available. However, it is rarely being investigated whether dew can mitigate the impact of such extreme climatic events on grassland ecosystem carbon and water exchange. Here we use stable isotopes in meteoric waters and leaf sugars, eddy covariance fluxes for H2O vapor and CO2, in combination with meteorological and plant physiological measurements, to investigate the combined effect of dew and heat-drought stress on plant water status and net ecosystem production (NEP) in an alpine grassland (2000 m elevation) during the June 2019 European heatwave. Before the heatwave, enhanced NEP in the early morning hours can be attributed to leaf wetting by dew. However, dew benefits on NEP were cancelled out by the heatwave, due to the minor contribution of dew in leaf water. Heat-induced reduction in NEP was intensified by the combined effect of drought stress. The recovery of NEP after the peak of the heatwave could be linked to the refilling of plant tissues during nighttime. Among-genera differences of plant water status affected by dew and heat-drought stress can be attributed to differences in their foliar dew water uptake, and their reliance on soil moisture or the impact of the atmospheric evaporative demand. Our results indicate that dew influence on alpine grassland ecosystems varies according to the environmental stress and plant physiology.
Collapse
Affiliation(s)
- Yafei Li
- Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - Werner Eugster
- Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - Andreas Riedl
- Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - Marco M. Lehmann
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, Switzerland
| | | | - Nina Buchmann
- Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| |
Collapse
|
6
|
Tang Y, Sahlstedt E, Young G, Schiestl‐Aalto P, Saurer M, Kolari P, Jyske T, Bäck J, Rinne‐Garmston KT. Estimating intraseasonal intrinsic water-use efficiency from high-resolution tree-ring δ 13 C data in boreal Scots pine forests. THE NEW PHYTOLOGIST 2023; 237:1606-1619. [PMID: 36451527 PMCID: PMC10108005 DOI: 10.1111/nph.18649] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 11/16/2022] [Indexed: 05/26/2023]
Abstract
Intrinsic water-use efficiency (iWUE), a key index for carbon and water balance, has been widely estimated from tree-ring δ13 C at annual resolution, but rarely at high-resolution intraseasonal scale. We estimated high-resolution iWUE from laser-ablation δ13 C analysis of tree-rings (iWUEiso ) and compared it with iWUE derived from gas exchange (iWUEgas ) and eddy covariance (iWUEEC ) data for two Pinus sylvestris forests from 2002 to 2019. By carefully timing iWUEiso via modeled tree-ring growth, iWUEiso aligned well with iWUEgas and iWUEEC at intraseasonal scale. However, year-to-year patterns of iWUEgas , iWUEiso , and iWUEEC were different, possibly due to distinct environmental drivers on iWUE across leaf, tree, and ecosystem scales. We quantified the modification of iWUEiso by postphotosynthetic δ13 C enrichment from leaf sucrose to tree rings and by nonexplicit inclusion of mesophyll and photorespiration terms in photosynthetic discrimination model, which resulted in overestimation of iWUEiso by up to 11% and 14%, respectively. We thus extended the application of tree-ring δ13 C for iWUE estimates to high-resolution intraseasonal scale. The comparison of iWUEgas , iWUEiso , and iWUEEC provides important insights into physiological acclimation of trees across leaf, tree, and ecosystem scales under climate change and improves the upscaling of ecological models.
Collapse
Affiliation(s)
- Yu Tang
- Bioeconomy and Environment UnitNatural Resources Institute Finland (Luke)Latokartanonkaari 900790HelsinkiFinland
- Faculty of Agriculture and Forestry, Institute for Atmospheric and Earth System Research (INAR) / Forest SciencesUniversity of HelsinkiPO Box 2700014HelsinkiFinland
| | - Elina Sahlstedt
- Bioeconomy and Environment UnitNatural Resources Institute Finland (Luke)Latokartanonkaari 900790HelsinkiFinland
| | - Giles Young
- Bioeconomy and Environment UnitNatural Resources Institute Finland (Luke)Latokartanonkaari 900790HelsinkiFinland
| | - Pauliina Schiestl‐Aalto
- Faculty of Science, Institute for Atmospheric and Earth System Research (INAR) / PhysicsUniversity of HelsinkiPO Box 6800014HelsinkiFinland
| | - Matthias Saurer
- Forest DynamicsSwiss Federal Institute for Forest, Snow and Landscape Research (WSL)Zürcherstrasse 1118903BirmensdorfSwitzerland
| | - Pasi Kolari
- Faculty of Science, Institute for Atmospheric and Earth System Research (INAR) / PhysicsUniversity of HelsinkiPO Box 6800014HelsinkiFinland
| | - Tuula Jyske
- Production Systems UnitNatural Resources Institute FinlandTietotie 202150EspooFinland
| | - Jaana Bäck
- Faculty of Agriculture and Forestry, Institute for Atmospheric and Earth System Research (INAR) / Forest SciencesUniversity of HelsinkiPO Box 2700014HelsinkiFinland
| | - Katja T. Rinne‐Garmston
- Bioeconomy and Environment UnitNatural Resources Institute Finland (Luke)Latokartanonkaari 900790HelsinkiFinland
| |
Collapse
|
7
|
Peltier DMP, Lemoine J, Ebert C, Xu X, Ogle K, Richardson AD, Carbone MS. An incubation method to determine the age of available nonstructural carbon in woody plant tissues. TREE PHYSIOLOGY 2023:tpad015. [PMID: 36738259 DOI: 10.1093/treephys/tpad015] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Radiocarbon (∆14C) measurements of nonstructural carbon enable inference on the age and turnover time of stored photosynthate (e.g., sugars, starch), of which the largest pool in trees resides in the main bole. Because of potential issues with extraction-based methods, we introduce an incubation method to capture the ∆14C of nonstructural carbon via respired CO2. In this study, we compared the ∆14C obtained from these incubations with ∆14C from a well-established extraction method, using increment cores from a mature trembling aspen (Populus tremuloides). To understand any potential ∆14C disagreement, the yields from both methods were also benchmarked against the phenol-sulfuric acid concentration assay. We found incubations captured less than 100% of measured sugar and starch carbon, with recovery ranging from ~ 3% in heartwood to 85% in shallow sapwood. However, extractions universally over-yielded (mean 273 ± 101% expected sugar carbon; as high as 480%), where sugars represented less than half of extracted soluble carbon, indicating very poor specificity. While separation of soluble and insoluble nonstructural carbon is ostensibly a strength of extraction based methods, there was also evidence of poor separation of these two fractions in extractions. The ∆14C of respired CO2 and ∆14C from extractions were similar in the sapwood, while extractions resulted in comparatively higher ∆14C (older carbon) in heartwood and bark. Because yield and ∆14C discrepancies were largest in old tissues, incubations may better capture the ∆14C of nonstructural carbon that is actually metabolically available. That is, we suggest extractions include metabolically irrelevant carbon from dead tissues or cells, as well as carbon that is neither sugar nor starch. In contrast, nonstructural carbon captured by extractions must be respired to be measured. We thus suggest incubations of live tissues are a potentially viable, inexpensive, and versatile method to study the ∆14C of metabolically relevant (available) nonstructural carbon.
Collapse
Affiliation(s)
- Drew M P Peltier
- Center for Ecosystem Science and Society, Northern Arizona University, AZ
| | - Jim Lemoine
- Center for Ecosystem Science and Society, Northern Arizona University, AZ
| | - Chris Ebert
- Center for Ecosystem Science and Society, Northern Arizona University, AZ
| | - Xiaomei Xu
- Department of Earth System Science, University of California-Irvine, CA
| | - Kiona Ogle
- Center for Ecosystem Science and Society, Northern Arizona University, AZ
- School of Informatics, Computing, and Cyber Systems, Northern Arizona University, AZ
| | - Andrew D Richardson
- Center for Ecosystem Science and Society, Northern Arizona University, AZ
- School of Informatics, Computing, and Cyber Systems, Northern Arizona University, AZ
| | - Mariah S Carbone
- Center for Ecosystem Science and Society, Northern Arizona University, AZ
| |
Collapse
|
8
|
Tang Y, Schiestl-Aalto P, Lehmann MM, Saurer M, Sahlstedt E, Kolari P, Leppä K, Bäck J, Rinne-Garmston KT. Estimating intra-seasonal photosynthetic discrimination and water use efficiency using δ13C of leaf sucrose in Scots pine. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:321-335. [PMID: 36255219 PMCID: PMC9786842 DOI: 10.1093/jxb/erac413] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Accepted: 10/17/2022] [Indexed: 05/31/2023]
Abstract
Sucrose has a unique role in recording environmental and physiological signals during photosynthesis in its carbon isotope composition (δ13C) and transport of the signal to tree rings. Yet, instead of sucrose, total organic matter (TOM) or water-soluble carbohydrates (WSC) are typically analysed in studies that follow δ13C signals within trees. To study how the choice of organic material may bias the interpretation of δ13C records, we used mature field-grown Scots pine (Pinus sylvestris) to compare for the first time δ13C of different leaf carbon pools with δ13C of assimilates estimated by a chamber-Picarro system (δ13CA_Picarro), and a photosynthetic discrimination model (δ13CA_model). Compared with sucrose, the other tested carbon pools, such as TOM and WSC, poorly recorded the seasonal trends or absolute values of δ13CA_Picarro and δ13CA_model. Consequently, in comparison with the other carbon pools, sucrose δ13C was superior for reconstructing changes in intrinsic water use efficiency (iWUE), agreeing in both absolute values and intra-seasonal variations with iWUE estimated from gas exchange. Thus, deriving iWUE and environmental signals from δ13C of bulk organic matter can lead to misinterpretation. Our findings underscore the advantage of using sucrose δ13C to understand plant physiological responses in depth.
Collapse
Affiliation(s)
| | - Paulina Schiestl-Aalto
- Institute for Atmospheric and Earth System Research (INAR)/Physics, Faculty of Science, University of Helsinki, P.O. Box 68, 00014, Helsinki, Finland
| | - Marco M Lehmann
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Matthias Saurer
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Elina Sahlstedt
- Bioeconomy and Environment Unit, Natural Resources Institute Finland (Luke), Latokartanonkaari 9, 00790, Helsinki, Finland
| | - Pasi Kolari
- Institute for Atmospheric and Earth System Research (INAR)/Physics, Faculty of Science, University of Helsinki, P.O. Box 68, 00014, Helsinki, Finland
| | - Kersti Leppä
- Bioeconomy and Environment Unit, Natural Resources Institute Finland (Luke), Latokartanonkaari 9, 00790, Helsinki, Finland
| | - Jaana Bäck
- Institute for Atmospheric and Earth System Research (INAR)/Forest Sciences, Faculty of Agriculture and Forestry, University of Helsinki, P.O. Box 27, 00014, Helsinki, Finland
| | - Katja T Rinne-Garmston
- Bioeconomy and Environment Unit, Natural Resources Institute Finland (Luke), Latokartanonkaari 9, 00790, Helsinki, Finland
| |
Collapse
|
9
|
Tang Y, Schiestl-Aalto P, Saurer M, Sahlstedt E, Kulmala L, Kolari P, Ryhti K, Salmon Y, Jyske T, Ding Y, Bäck J, Rinne-Garmston KT. Tree organ growth and carbon allocation dynamics impact the magnitude and δ13C signal of stem and soil CO2 fluxes. TREE PHYSIOLOGY 2022; 42:2404-2418. [PMID: 35849053 PMCID: PMC10101690 DOI: 10.1093/treephys/tpac079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 06/08/2022] [Accepted: 07/02/2022] [Indexed: 05/14/2023]
Abstract
Incomplete knowledge of carbon (C) allocation dynamics in trees hinders accurate modeling and future predictions of tree growth. We studied C allocation dynamics in a mature Pinus sylvestris L. dominated forest with a novel analytical approach, allowing the first comparison of: (i) magnitude and δ13C of shoot, stem and soil CO2 fluxes (Ashoot, Rstem and Rsoil), (ii) concentration and δ13C of compound-specific and/or bulk non-structural carbohydrates (NSCs) in phloem and roots and (iii) growth of stem and fine roots. Results showed a significant effect of phloem NSC concentrations on tracheid growth, and both variables significantly impacted Rstem. Also, concentrations of root NSCs, especially starch, had a significant effect on fine root growth, although no effect of root NSC concentrations or root growth was detected on Rsoil. Time series analysis between δ13C of Ashoot and δ13C of Rstem or δ13C of Rsoil revealed strengthened C allocation to stem or roots under high C demands. Furthermore, we detected a significant correlation between δ13C of Rstem and δ13C of phloem sucrose and glucose, but not for starch or water-soluble carbohydrates. Our results indicate the need to include C allocation dynamics into tree growth models. We recommend using compound-specific concentration and δ13C analysis to reveal C allocation processes that may not be detected by the conventional approach that utilizes bulk organic matter.
Collapse
Affiliation(s)
| | - Pauliina Schiestl-Aalto
- Institute for Atmospheric and Earth System Research
(INAR)/Physics, Faculty of Science, University of
Helsinki, P.O. Box 68, FI-00014 Helsinki, Finland
| | - Matthias Saurer
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape
Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Elina Sahlstedt
- Bioeconomy and Environment Unit, Natural Resources Institute
Finland, Latokartanonkaari 9, FI-00790 Helsinki, Finland
| | - Liisa Kulmala
- Institute for Atmospheric and Earth System Research (INAR)/Forest
Sciences, Faculty of Agriculture and Forestry, University
of Helsinki, P.O. Box 27, FI-00014 Helsinki, Finland
- Finnish Meteorological Institute, P.O. Box 503, FI-00101
Helsinki, Finland
| | - Pasi Kolari
- Institute for Atmospheric and Earth System Research
(INAR)/Physics, Faculty of Science, University of
Helsinki, P.O. Box 68, FI-00014 Helsinki, Finland
| | - Kira Ryhti
- Institute for Atmospheric and Earth System Research (INAR)/Forest
Sciences, Faculty of Agriculture and Forestry, University
of Helsinki, P.O. Box 27, FI-00014 Helsinki, Finland
| | - Yann Salmon
- Institute for Atmospheric and Earth System Research (INAR)/Forest
Sciences, Faculty of Agriculture and Forestry, University
of Helsinki, P.O. Box 27, FI-00014 Helsinki, Finland
- Institute for Atmospheric and Earth System Research
(INAR)/Physics, Faculty of Science, University of
Helsinki, P.O. Box 68, FI-00014 Helsinki, Finland
| | - Tuula Jyske
- Production Systems Unit, Natural Resources Institute Finland,
Tietotie 2, FI-02150 Espoo, Finland
| | - Yiyang Ding
- Department of Forest Sciences, Faculty of Agriculture and
Forestry, University of Helsinki, P.O. Box 27, FI-00014
Helsinki, Finland
| | - Jaana Bäck
- Institute for Atmospheric and Earth System Research (INAR)/Forest
Sciences, Faculty of Agriculture and Forestry, University
of Helsinki, P.O. Box 27, FI-00014 Helsinki, Finland
| | - Katja T Rinne-Garmston
- Bioeconomy and Environment Unit, Natural Resources Institute
Finland, Latokartanonkaari 9, FI-00790 Helsinki, Finland
| |
Collapse
|
10
|
Leppä K, Tang Y, Ogée J, Launiainen S, Kahmen A, Kolari P, Sahlstedt E, Saurer M, Schiestl‐Aalto P, Rinne‐Garmston KT. Explicitly accounting for needle sugar pool size crucial for predicting intra-seasonal dynamics of needle carbohydrates δ 18 O and δ 13 C. THE NEW PHYTOLOGIST 2022; 236:2044-2060. [PMID: 35575976 PMCID: PMC9795997 DOI: 10.1111/nph.18227] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Accepted: 05/07/2022] [Indexed: 05/14/2023]
Abstract
We explore needle sugar isotopic compositions (δ18 O and δ13 C) in boreal Scots pine (Pinus sylvestris) over two growing seasons. A leaf-level dynamic model driven by environmental conditions and based on current understanding of isotope fractionation processes was built to predict δ18 O and δ13 C of two hierarchical needle carbohydrate pools, accounting for the needle sugar pool size and the presence of an invariant pinitol pool. Model results agreed well with observed needle water δ18 O, δ18 O and δ13 C of needle water-soluble carbohydrates (sugars + pinitol), and needle sugar δ13 C (R2 = 0.95, 0.84, 0.60, 0.73, respectively). Relative humidity (RH) and intercellular to ambient CO2 concentration ratio (Ci /Ca ) were the dominant drivers of δ18 O and δ13 C variability, respectively. However, the variability of needle sugar δ18 O and δ13 C was reduced on diel and intra-seasonal timescales, compared to predictions based on instantaneous RH and Ci /Ca , due to the large needle sugar pool, which caused the signal formation period to vary seasonally from 2 d to more than 5 d. Furthermore, accounting for a temperature-sensitive biochemical 18 O-fractionation factor and mesophyll resistance in 13 C-discrimination were critical. Interpreting leaf-level isotopic signals requires understanding on time integration caused by mixing in the needle sugar pool.
Collapse
Affiliation(s)
- Kersti Leppä
- Natural Resources Institute Finland00790HelsinkiFinland
| | - Yu Tang
- Natural Resources Institute Finland00790HelsinkiFinland
- Faculty of Agriculture and Forestry, Institute for Atmospheric and Earth System Research (INAR)/Forest SciencesUniversity of Helsinki00014HelsinkiFinland
| | | | | | - Ansgar Kahmen
- Department of Environmental Sciences – BotanyUniversity of Basel4056BaselSwitzerland
| | - Pasi Kolari
- Faculty of Science, Institute for Atmospheric and Earth System Research (INAR)/PhysicsUniversity of Helsinki00014HelsinkiFinland
| | | | - Matthias Saurer
- Forest Dynamics, Swiss Federal Institute for ForestSnow and Landscape Research (WSL)8903BirmensdorfSwitzerland
| | - Pauliina Schiestl‐Aalto
- Faculty of Science, Institute for Atmospheric and Earth System Research (INAR)/PhysicsUniversity of Helsinki00014HelsinkiFinland
| | | |
Collapse
|
11
|
Akamatsu F, Shimizu H, Igi Y, Kamada A, Koyama K, Yamada O, Goto-Yamamoto N. Prediction method for determining the carbon stable isotopic composition of berry sugars in the original must of Chardonnay wines. Food Chem 2022; 369:130854. [PMID: 34450515 DOI: 10.1016/j.foodchem.2021.130854] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 07/14/2021] [Accepted: 08/09/2021] [Indexed: 01/19/2023]
Abstract
The carbon stable isotopic composition, as indicated by the δ13C value, of wine ethanol is inherited from berry sugars, but little is known about the variation in sugar δ13C values of Japanese grapes relative to overseas grapes. This study found a large variation in sugar δ13C values of Chardonnay grapes grown in Japan (-27.2 ± 0.9‰, mean ± standard deviation, n = 33), with sugar δ13C values depending on the δ13C values and content of monosaccharides. After complete fermentation, the carbon isotope discrimination between berry sugars and wine ethanol was 1.5 ± 0.1‰. Ethanol δ13C values and carbon isotope discrimination enabled prediction of sugar δ13C values in the original must. Imported wines had higher sugar δ13C values than those of wines made from Japanese grapes, suggesting drier overseas viticulture conditions. The determination of sugar δ13C values in grape berries provides valuable information for viticulture and wine authentication.
Collapse
Affiliation(s)
- Fumikazu Akamatsu
- National Research Institute of Brewing, 3-7-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-0046, Japan.
| | - Hideaki Shimizu
- National Research Institute of Brewing, 3-7-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-0046, Japan
| | - Yukari Igi
- National Research Institute of Brewing, 3-7-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-0046, Japan
| | - Aya Kamada
- National Research Institute of Brewing, 3-7-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-0046, Japan
| | - Kazuya Koyama
- National Research Institute of Brewing, 3-7-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-0046, Japan
| | - Osamu Yamada
- National Research Institute of Brewing, 3-7-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-0046, Japan
| | - Nami Goto-Yamamoto
- National Research Institute of Brewing, 3-7-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-0046, Japan
| |
Collapse
|
12
|
Schuler P, Cormier M, Werner RA, Buchmann N, Gessler A, Vitali V, Saurer M, Lehmann MM. A high-temperature water vapor equilibration method to determine non-exchangeable hydrogen isotope ratios of sugar, starch and cellulose. PLANT, CELL & ENVIRONMENT 2022; 45:12-22. [PMID: 34564870 PMCID: PMC9291759 DOI: 10.1111/pce.14193] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 09/16/2021] [Accepted: 09/21/2021] [Indexed: 06/13/2023]
Abstract
The analysis of the non-exchangeable hydrogen isotope ratio (δ2 Hne ) in carbohydrates is mostly limited to the structural component cellulose, while simple high-throughput methods for δ2 Hne values of non-structural carbohydrates (NSC) such as sugar and starch do not yet exist. Here, we tested if the hot vapor equilibration method originally developed for cellulose is applicable for NSC, verified by comparison with the traditional nitration method. We set up a detailed analytical protocol and applied the method to plant extracts of leaves from species with different photosynthetic pathways (i.e., C3 , C4 and CAM). δ2 Hne of commercial sugars and starch from different classes and sources, ranging from -157.8 to +6.4‰, were reproducibly analysed with precision between 0.2‰ and 7.7‰. Mean δ2 Hne values of sugar are lowest in C3 (-92.0‰), intermediate in C4 (-32.5‰) and highest in CAM plants (6.0‰), with NSC being 2 H-depleted compared to cellulose and sugar being generally more 2 H-enriched than starch. Our results suggest that our method can be used in future studies to disentangle 2 H-fractionation processes, for improving mechanistic δ2 Hne models for leaf and tree-ring cellulose and for further development of δ2 Hne in plant carbohydrates as a potential proxy for climate, hydrology, plant metabolism and physiology.
Collapse
Affiliation(s)
- Philipp Schuler
- Research Unit of Forest Dynamics, Research Group of Ecosystem EcologySwiss Federal Institute for Forest, Snow and Landscape Research WSLBirmensdorfSwitzerland
| | - Marc‐André Cormier
- Department of Earth Sciences, Research Group of Ocean BiogeochemistryUniversity of OxfordOxfordUK
| | - Roland A. Werner
- Department of Environmental Systems Science, Group of Grassland SciencesETH ZurichZürichSwitzerland
| | - Nina Buchmann
- Department of Environmental Systems Science, Group of Grassland SciencesETH ZurichZürichSwitzerland
| | - Arthur Gessler
- Research Unit of Forest Dynamics, Research Group of Ecosystem EcologySwiss Federal Institute for Forest, Snow and Landscape Research WSLBirmensdorfSwitzerland
- Department of Environmental Systems Science, Institute of Terrestrial EcosystemsETH ZurichZürichSwitzerland
| | - Valentina Vitali
- Research Unit of Forest Dynamics, Research Group of Ecosystem EcologySwiss Federal Institute for Forest, Snow and Landscape Research WSLBirmensdorfSwitzerland
| | - Matthias Saurer
- Research Unit of Forest Dynamics, Research Group of Ecosystem EcologySwiss Federal Institute for Forest, Snow and Landscape Research WSLBirmensdorfSwitzerland
| | - Marco M. Lehmann
- Research Unit of Forest Dynamics, Research Group of Ecosystem EcologySwiss Federal Institute for Forest, Snow and Landscape Research WSLBirmensdorfSwitzerland
| |
Collapse
|
13
|
Júnior WVA, Neto CFO, Filho BGS, Cruz ED, Amarante CB, Barbosa AVC, Nogueira GAS, Nascimento VR, Sousa DJP, Teixeira JSS. Biochemical metabolism of young plants of Ucuúba (Virola surinamensis) in the presence of cadmium. BMC PLANT BIOLOGY 2021; 21:151. [PMID: 33761873 PMCID: PMC7990090 DOI: 10.1186/s12870-021-02912-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Accepted: 03/03/2021] [Indexed: 06/12/2023]
Abstract
Virola surinamensis is a forest species widely distributed in the estuaries of the Amazon. These ecosystems are susceptible to contamination by Cadmium (Cd), indicating that the plant has strategies for tolerating this metal. The aim of this study was to assess the nitrogen and carbon metabolism of young plants of Ucuúba (Virola surinamensis) in the presence of cadmium with the perspective of the phytoremediation of contaminated environments. The used experimental design was a completely randomized design with five Cd concentrations (0, 15, 30, 45, and 60 mg L- 1), for 60 days. In general, Cd did not affect nitrate concentration in the root but had a positive effect on leaves. The reduction of nitrate reductase (NR) in plants exposed to Cd was followed by a decrease in ammonia, total soluble amino acids (TSA), and total soluble proteins (TSP). Cd promoted an increase in the concentration of total soluble carbohydrates (TSC), proline, sucrose, and reducing sugars in the plants. The increase in TSC, sucrose and proline, suggests a metabolic regulatory mechanism of V. surinamensis against Cd stress.
Collapse
Affiliation(s)
- W V Andrade Júnior
- Federal Rural University of the Amazon, Institute of Agronomists Sciences, Campus Belém, Belém, Pará, Brazil
| | - C F Oliveira Neto
- Federal Rural University of the Amazon, Institute of Agronomists Sciences, Campus Belém, Belém, Pará, Brazil
| | - B G Santos Filho
- Federal Rural University of the Amazon, Institute of Agronomists Sciences, Campus Belém, Belém, Pará, Brazil
| | - E D Cruz
- Brazilian Agricultural Research Corporation (Embrapa), Belem, Pará, Brazil
| | - C B Amarante
- Museu Paraense Emílio Goeldi (MPEG), Belém, Brazil
| | - A V C Barbosa
- Federal Rural University of the Amazon, Institute of Agronomists Sciences, Campus Belém, Belém, Pará, Brazil
| | - G A S Nogueira
- Federal Rural University of the Amazon, Institute of Agronomists Sciences, Campus Belém, Belém, Pará, Brazil.
- Federal Rural University of the Amazon, Institute of Agronomists Sciences, Campus Parauapebas, Parauapebas, Pará, Brazil.
| | - V R Nascimento
- Federal Rural University of the Amazon, Institute of Agronomists Sciences, Campus Belém, Belém, Pará, Brazil
| | - D J P Sousa
- Federal Rural University of the Amazon, Institute of Agronomists Sciences, Campus Belém, Belém, Pará, Brazil
| | - J S S Teixeira
- Federal Rural University of the Amazon, Institute of Agronomists Sciences, Campus Belém, Belém, Pará, Brazil
| |
Collapse
|
14
|
Ghiasi S, Lehmann MM, Badeck FW, Ghashghaie J, Hänsch R, Meinen R, Streb S, Hüdig M, Ruckle ME, Carrera DÁ, Siegwolf RTW, Buchmann N, Werner RA. Nitrate and ammonium differ in their impact on δ 13C of plant metabolites and respired CO 2 from tobacco leaves. ISOTOPES IN ENVIRONMENTAL AND HEALTH STUDIES 2021; 57:11-34. [PMID: 32885670 DOI: 10.1080/10256016.2020.1810683] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Accepted: 07/15/2020] [Indexed: 06/11/2023]
Abstract
The carbon isotopic composition (δ13C) of foliage is often used as proxy for plant performance. However, the effect of N O 3 - vs. N H 4 + supply on δ13C of leaf metabolites and respired CO2 is largely unknown. We supplied tobacco plants with a gradient of N O 3 - to N H 4 + concentration ratios and determined gas exchange variables, concentrations and δ13C of tricarboxylic acid (TCA) cycle intermediates, δ13C of dark-respired CO2, and activities of key enzymes nitrate reductase, malic enzyme and phosphoenolpyruvate carboxylase. Net assimilation rate, dry biomass and concentrations of organic acids and starch decreased along the gradient. In contrast, respiration rates, concentrations of intercellular CO2, soluble sugars and amino acids increased. As N O 3 - decreased, activities of all measured enzymes decreased. δ13C of CO2 and organic acids closely co-varied and were more positive under N O 3 - supply, suggesting organic acids as potential substrates for respiration. Together with estimates of intra-molecular 13C enrichment in malate, we conclude that a change in the anaplerotic reaction of the TCA cycle possibly contributes to 13C enrichment in organic acids and respired CO2 under N O 3 - supply. Thus, the effect of N O 3 - vs. N H 4 + on δ13C is highly relevant, particularly if δ13C of leaf metabolites or respiration is used as proxy for plant performance.
Collapse
Affiliation(s)
- Shiva Ghiasi
- Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
| | - Marco M Lehmann
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Franz-W Badeck
- Council for Agricultural Research and Economics, Research Centre for Genomics and Bioinformatics (CREA-GB), Fiorenzuola d´Arda, Italy
| | - Jaleh Ghashghaie
- Laboratoire d'Ecologie Systématique Evolution (ESE), Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Orsay, France
| | - Robert Hänsch
- Institute of Plant Biology, Technische Universität Braunschweig, Braunschweig, Germany
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, Chongqing, People's Republic of China
| | - Rieke Meinen
- Institute of Plant Biology, Technische Universität Braunschweig, Braunschweig, Germany
| | | | - Meike Hüdig
- Institute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, Bonn, Germany
| | - Michael E Ruckle
- Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
| | - Dániel Á Carrera
- Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
| | - Rolf T W Siegwolf
- Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Nina Buchmann
- Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
| | - Roland A Werner
- Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
| |
Collapse
|
15
|
Lehmann MM, Egli M, Brinkmann N, Werner RA, Saurer M, Kahmen A. Improving the extraction and purification of leaf and phloem sugars for oxygen isotope analyses. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2020; 34:e8854. [PMID: 32511807 DOI: 10.1002/rcm.8854] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Revised: 05/29/2020] [Accepted: 06/04/2020] [Indexed: 06/11/2023]
Abstract
RATIONALE The oxygen isotopic composition (here shown as the δ18 O value) of soluble sugars in leaves and phloem tissue holds valuable information about plant functions in response to climatic changes. However, δ18 O analysis of sugars is prone to error, and thoroughly tested methods are lacking. METHODS We performed three experiments to test if sample preparation modifies the δ18 O values of sugars. In experiment 1, we tested the effects of oven-drying versus freeze-drying, whereas in experiment 2 we focused on the extraction and purification of leaf sugars. In experiment 3, we investigated the exudation and purification of twig phloem sugars as a function of exudation time and different ethylenediaminetetraacetic acid (EDTA) exudation media. RESULTS Freeze-drying produced more consistent δ18 O values than oven-drying for sucrose but not for phloem sugars. The extraction and purification of leaf sugars can be performed without a significant modification of their δ18 O values; yet the purified leaf and phloem sugars possessed higher δ18 O values than the fraction of water-soluble compounds. Moreover, the exudation time significantly modulated the δ18 O values of phloem sugars, which is probably related to changes in the sugar composition. The addition of EDTA did not improve the determination of the δ18 O values of phloem sugars. CONCLUSIONS We show that the sample preparation of plant sugars for the reliable determination of δ18 O values requires a strict protocol, which is described in this paper. For phloem sugar, we recommend a maximum exudation time of 1 h to reduce the degradation of sucrose and minimise oxygen isotope exchange reactions between the resulting hexoses and water.
Collapse
Affiliation(s)
- Marco M Lehmann
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, Switzerland
| | - Melanie Egli
- Department of Environmental Sciences - Botany, University of Basel, Basel, Switzerland
| | - Nadine Brinkmann
- Department of Environmental Sciences - Botany, University of Basel, Basel, Switzerland
| | - Roland A Werner
- Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - Matthias Saurer
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, Switzerland
| | - Ansgar Kahmen
- Department of Environmental Sciences - Botany, University of Basel, Basel, Switzerland
| |
Collapse
|
16
|
Lehmann MM, Goldsmith GR, Mirande-Ney C, Weigt RB, Schönbeck L, Kahmen A, Gessler A, Siegwolf RTW, Saurer M. The 18 O-signal transfer from water vapour to leaf water and assimilates varies among plant species and growth forms. PLANT, CELL & ENVIRONMENT 2020; 43:510-523. [PMID: 31732962 DOI: 10.1111/pce.13682] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Revised: 11/11/2019] [Accepted: 11/14/2019] [Indexed: 06/10/2023]
Abstract
The 18 O signature of atmospheric water vapour (δ18 OV ) is known to be transferred via leaf water to assimilates. It remains, however, unclear how the 18 O-signal transfer differs among plant species and growth forms. We performed a 9-hr greenhouse fog experiment (relative humidity ≥ 98%) with 18 O-depleted water vapour (-106.7‰) on 140 plant species of eight different growth forms during daytime. We quantified the 18 O-signal transfer by calculating the mean residence time of O in leaf water (MRTLW ) and sugars (MRTSugars ) and related it to leaf traits and physiological drivers. MRTLW increased with leaf succulence and thickness, varying between 1.4 and 10.8 hr. MRTSugars was shorter in C3 and C4 plants than in crassulacean acid metabolism (CAM) plants and highly variable among species and growth forms; MRTSugars was shortest for grasses and aquatic plants, intermediate for broadleaf trees, shrubs, and herbs, and longest for conifers, epiphytes, and succulents. Sucrose was more sensitive to δ18 OV variations than other assimilates. Our comprehensive study shows that plant species and growth forms vary strongly in their sensitivity to δ18 OV variations, which is important for the interpretation of δ18 O values in plant organic material and compounds and thus for the reconstruction of climatic conditions and plant functional responses.
Collapse
Affiliation(s)
- Marco M Lehmann
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, 8903, Switzerland
| | - Gregory R Goldsmith
- Schmid College of Science and Technology, Chapman University, Orange, CA, 92866
| | | | - Rosemarie B Weigt
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, 8903, Switzerland
| | - Leonie Schönbeck
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, 8903, Switzerland
| | - Ansgar Kahmen
- Department of Environmental Sciences-Botany, University of Basel, Basel, 4056, Switzerland
| | - Arthur Gessler
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, 8903, Switzerland
| | - Rolf T W Siegwolf
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, 8903, Switzerland
| | - Matthias Saurer
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, 8903, Switzerland
| |
Collapse
|
17
|
Akamatsu F, Igi Y, Fujita A. Separation and Purification of Glucose in Sake for Carbon Stable Isotope Analysis. FOOD ANAL METHOD 2020. [DOI: 10.1007/s12161-020-01704-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
|
18
|
Nouara A, Panagiotopoulos C, Balesdent J, Violaki K, Bard E, Fagault Y, Repeta DJ, Sempéré R. Liquid chromatographic isolation of individual carbohydrates from environmental matrices for stable carbon analysis and radiocarbon dating. Anal Chim Acta 2019; 1067:137-146. [PMID: 31047145 DOI: 10.1016/j.aca.2019.03.028] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Revised: 03/05/2019] [Accepted: 03/15/2019] [Indexed: 11/19/2022]
Abstract
Carbohydrates are among the most abundant organic molecules in both aquatic and terrestrial ecosystems; however, very few studies have addressed their isotopic signature using compound-specific isotope analysis, which provides additional information on their origin (δ13C) and fate (Δ14C). In this study, semi-preparative liquid chromatography with refractive index detection (HPLC-RI) was employed to produce pure carbohydrate targets for subsequent offline δ13C and Δ14C isotopic analysis. δ13C analysis was performed by elemental analyzer-isotope ratio mass spectrometer (EA-IRMS) whereas Δ14C analysis was performed by an innovative measurement procedure based on the direct combustion of the isolated fractions using an elemental analyzer coupled to the gas source of a mini carbon dating system (AixMICADAS). In general, four successive purifications with Na+, Ca2+, Pb2+, and Ca2+ cation-exchange columns were sufficient to produce pure carbohydrates. These carbohydrates were subsequently identified using mass spectrometry by comparing their mass spectra with those of authentic standards. The applicability of the proposed method was tested on two different environmental samples comprising marine particulate organic matter (POM) and total suspended atmospheric particles (TSP). The obtained results revealed that for the marine POM sample, the δ13C values of the individual carbohydrates ranged from -18.5 to -16.8‰, except for levoglucosan and mannosan, which presented values of -27.2 and -26.2‰, respectively. For the TSP sample, the δ13C values ranged from -26.4 to -25.0‰. The galactose and glucose Δ14C values were 19 and 43‰, respectively, for the POM sample. On the other hand, the levoglucosan radiocarbon value was 33‰ for the TSP sample. These results suggest that these carbohydrates exhibit a modern age in both of these samples. Radiocarbon HPLC collection window blanks, measured after the addition of phthalic acid (14C free blank), ranged from -988 to -986‰ for the abovementioned compounds, indicating a very small background isotopic influence from the whole purification procedure. Overall, the proposed method does not require derivatization steps, produces extremely low blanks, and may be applied to different types of environmental samples.
Collapse
Affiliation(s)
- Amel Nouara
- Aix Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110, 13288, Marseille, France
| | | | - Jérôme Balesdent
- Aix Marseille Univ., CNRS, Collège de France, IRD, INRA, CEREGE UM34, 13545, Aix-en-Provence, France
| | - Kalliopi Violaki
- Aix Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110, 13288, Marseille, France
| | - Edouard Bard
- Aix Marseille Univ., CNRS, Collège de France, IRD, INRA, CEREGE UM34, 13545, Aix-en-Provence, France
| | - Yoann Fagault
- Aix Marseille Univ., CNRS, Collège de France, IRD, INRA, CEREGE UM34, 13545, Aix-en-Provence, France
| | - Daniel James Repeta
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, USA
| | - Richard Sempéré
- Aix Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110, 13288, Marseille, France
| |
Collapse
|
19
|
Increase in the oxygen stable isotopic composition of water in wine with low ethanol yield. Sci Rep 2019; 9:11039. [PMID: 31363156 PMCID: PMC6667440 DOI: 10.1038/s41598-019-47331-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2018] [Accepted: 07/11/2019] [Indexed: 11/21/2022] Open
Abstract
The stable isotopic composition of oxygen (δ18O) in wine is often analysed to determine the geographic origin of the wine and the amount of water dilution. However, little is known regarding the effects of two major winemaking techniques (the addition of acid (acidification) and sugar (chaptalization)) on the δ18O value of water in wine. Here we show that acidification and chaptalization have minor direct effects on the δ18O value but indirect effects based on the ethanol yield, which causes isotopic variation of up to 0.6‰. During fermentation, δ18O values increase at low ethanol yields, suggesting that yeast release water with a high δ18O value into wine when consuming sugars. Additionally, the ethanol yield is negatively correlated with the consumption of amino acids by the yeast, indicating that yeast growth decreases the ethanol yield. We therefore identify ethanol yield, which is decreased by the consumption of sugars by yeast for non-alcohol-fermentation processes as a potential factor leading to variations in the δ18O value of water during the winemaking process.
Collapse
|
20
|
Bögelein R, Lehmann MM, Thomas FM. Differences in carbon isotope leaf-to-phloem fractionation and mixing patterns along a vertical gradient in mature European beech and Douglas fir. THE NEW PHYTOLOGIST 2019; 222:1803-1815. [PMID: 30740705 DOI: 10.1111/nph.15735] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Accepted: 02/03/2019] [Indexed: 05/13/2023]
Abstract
While photosynthetic isotope discrimination is well understood, the postphotosynthetic and transport-related fractionation mechanisms that influence phloem and subsequently tree ring δ13 C are less investigated and may vary among species. We studied the seasonal and diel courses of leaf-to-phloem δ13 C differences of water-soluble organic matter (WSOM) in vertical crown gradients and followed the assimilate transport via the branches to the trunk phloem at breast height in European beech (Fagus sylvatica) and Douglas fir (Pseudotsuga menziesii). δ13 C of individual sugars and cyclitols from a subsample was determined by compound-specific isotope analysis. In beech, leaf-to-phloem δ13 C differences in WSOM increased with height and were partly caused by biochemical isotope fractionation between leaf compounds. 13 C-Enrichment of phloem sugars relative to leaf sucrose implies an additional isotope fractionation mechanism related to leaf assimilate export. In Douglas fir, leaf-to-phloem δ13 C differences were much smaller and isotopically invariant pinitol strongly influenced leaf and phloem WSOM. Trunk phloem WSOM at breast height reflected canopy-integrated δ13 C in beech but not in Douglas fir. Our results demonstrate that leaf-to-phloem isotope fractionation and δ13 C mixing patterns along vertical gradients can differ between tree species. These effects have to be considered for functional interpretations of trunk phloem and tree ring δ13 C.
Collapse
Affiliation(s)
- Rebekka Bögelein
- Faculty of Regional and Environmental Sciences - Geobotany, University of Trier, Behringstraße 21, Trier, 54296, Germany
| | - Marco M Lehmann
- Forest Dynamics, Swiss Federal Institute WSL Birmensdorf, Zuercherstrasse 111, Birmensdorf, 8903, Switzerland
| | - Frank M Thomas
- Faculty of Regional and Environmental Sciences - Geobotany, University of Trier, Behringstraße 21, Trier, 54296, Germany
| |
Collapse
|
21
|
Churakova Sidorova OV, Lehmann MM, Siegwolf RTW, Saurer M, Fonti MV, Schmid L, Timofeeva G, Rinne-Garmston KT, Bigler C. Compound-specific carbon isotope patterns in needles of conifer tree species from the Swiss National Park under recent climate change. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 139:264-272. [PMID: 30925436 DOI: 10.1016/j.plaphy.2019.03.016] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Revised: 02/03/2019] [Accepted: 03/08/2019] [Indexed: 06/09/2023]
Abstract
Elevated CO2 along with rising temperature and water deficits can lead to changes in tree physiology and leaf biochemistry. These changes can increase heat- and drought-induced tree mortality. We aim to reveal the impacts of climatic drivers on individual compounds at the leaf level among European larch (Larix decidua) and mountain pine (Pinus mugo) trees, which are widely distributed at high elevations. We investigated seasonal carbon isotope composition (δ13C) and concentration patterns of carbohydrates and organic acids in needles of these two different species from a case study in the Swiss National Park (SNP). We found that average and minimum air temperatures were the main climatic drivers of seasonal variation of δ13C in sucrose and glucose as well as in concentrations of carbohydrates and citric acid/citrate in needles of both tree species. The impact of seasonal climatic drivers on larch and mountain pine trees at the needle level is in line with our earlier study in this region for long-term changes at the tree-ring level. We conclude that the species-specific changes in δ13C and concentrations of carbohydrates and organic acids are sensitive indicators of changes in the metabolic pathways occurring as a result of climatic changes.
Collapse
Affiliation(s)
- Olga V Churakova Sidorova
- Forest Ecology, Department of Environmental Systems Science, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland; Siberian Federal University, Institute of Ecology and Geography, Laboratory of Ecosystems Biogeochemistry, 660041 Krasnoyarsk, Svobodniy pr 82/6, bld. 25, Russian Federation.
| | - Marco M Lehmann
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Rolf T W Siegwolf
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland; Paul Scherrer Institute, 5232 Villigen - PSI, Switzerland
| | - Matthias Saurer
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland; Paul Scherrer Institute, 5232 Villigen - PSI, Switzerland
| | - Marina V Fonti
- Siberian Federal University, Institute of Ecology and Geography, Laboratory of Ecosystems Biogeochemistry, 660041 Krasnoyarsk, Svobodniy pr 82/6, bld. 25, Russian Federation
| | - Lola Schmid
- Paul Scherrer Institute, 5232 Villigen - PSI, Switzerland
| | - Galina Timofeeva
- Forest Ecology, Department of Environmental Systems Science, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland; Paul Scherrer Institute, 5232 Villigen - PSI, Switzerland
| | - Katja T Rinne-Garmston
- Natural Resources Institute Finland (Luke), Latokartanonkaari 9, 00790 Helsinki, Finland
| | - Christof Bigler
- Forest Ecology, Department of Environmental Systems Science, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland
| |
Collapse
|
22
|
Lehmann MM, Ghiasi S, George GM, Cormier MA, Gessler A, Saurer M, Werner RA. Influence of starch deficiency on photosynthetic and post-photosynthetic carbon isotope fractionations. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:1829-1841. [PMID: 30785201 PMCID: PMC6436151 DOI: 10.1093/jxb/erz045] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Accepted: 01/21/2019] [Indexed: 05/27/2023]
Abstract
Carbon isotope (13C) fractionations occurring during and after photosynthetic CO2 fixation shape the carbon isotope composition (δ13C) of plant material and respired CO2. However, responses of 13C fractionations to diel variation in starch metabolism in the leaf are not fully understood. Here we measured δ13C of organic matter (δ13COM), concentrations and δ13C of potential respiratory substrates, δ13C of dark-respired CO2 (δ13CR), and gas exchange in leaves of starch-deficient plastidial phosphoglucomutase (pgm) mutants and wild-type plants of four species (Arabidopsis thaliana, Mesembryanthemum crystallinum, Nicotiana sylvestris, and Pisum sativum). The strongest δ13C response to the pgm-induced starch deficiency was observed in N. sylvestris, with more negative δ13COM, δ13CR, and δ13C values for assimilates (i.e. sugars and starch) and organic acids (i.e. malate and citrate) in pgm mutants than in wild-type plants during a diel cycle. The genotype differences in δ13C values could be largely explained by differences in leaf gas exchange. In contrast, the PGM-knockout effect on post-photosynthetic 13C fractionations via the plastidic fructose-1,6-bisphosphate aldolase reaction or during respiration was small. Taken together, our results show that the δ13C variations in starch-deficient mutants are primarily explained by photosynthetic 13C fractionations and that the combination of knockout mutants and isotope analyses allows additional insights into plant metabolism.
Collapse
Affiliation(s)
- Marco M Lehmann
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zuercherstrasse, Birmensdorf, Switzerland
| | - Shiva Ghiasi
- Institute of Agricultural Sciences, ETH Zurich, Universitaetstrasse, Zurich, Switzerland
| | - Gavin M George
- Institute of Molecular Plant Biology, ETH Zurich, Universitaetstrasse, Zurich, Switzerland
| | - Marc-André Cormier
- GFZ – German Research Centre for Geosciences, Geomorphology, Organic Surface Geochemistry Lab, Telegrafenberg, Wissenschaftspark Albert Einstein, Potsdam, Germany
- University of Oxford, Department of Earth Sciences, Ocean Biogeochemistry Group, South Parks Road, Oxford, UK
| | - Arthur Gessler
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zuercherstrasse, Birmensdorf, Switzerland
- Institute of Terrestrial Ecosystems, ETH Zurich, Universitaetstrasse, Zurich, Switzerland
| | - Matthias Saurer
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zuercherstrasse, Birmensdorf, Switzerland
| | - Roland A Werner
- Institute of Agricultural Sciences, ETH Zurich, Universitaetstrasse, Zurich, Switzerland
| |
Collapse
|
23
|
Skrzypek G, Ford D. Reference materials selection for the stable carbon isotope analysis of dissolved carbon using a wet oxidation system. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2019; 33:473-481. [PMID: 30421830 DOI: 10.1002/rcm.8351] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Revised: 11/06/2018] [Accepted: 11/07/2018] [Indexed: 06/09/2023]
Abstract
RATIONALE Wet chemical oxidation combined with isotope ratio mass spectrometry has become a routine technique for analyzing the stable carbon isotope composition of dissolved organic (DOC) and inorganic (DIC) carbon. However, methodological inconsistencies between laboratories in using different reference materials lead to a discrepancy in results. We experimentally tested the precision and accuracy of the analysis of commonly available international reference materials and other chemicals potentially suitable for laboratory standards. METHODS The solid international reference materials and other simple chemicals were used to prepare water solutions. A range of carbon concentrations was chosen to optimize tests for (1) precision and accuracy, (2) linearity, (3) detection limits, (4) memory effects, and (5) efficiency of DIC removal from a DOC/DIC mixtures. Samples were analyzed using an LC-IsoLink coupled with a Delta V Plus isotope ratio mass spectrometer (Thermo Fisher Scientific). RESULTS The analytical setup had a negligible memory effect, good reproducibility (<0.21‰) and accuracy (maximum difference from the true values <0.35‰) for the analyzed organic compounds if approximately ≥9 × 10-09 moles of dissolved carbon was injected into the system (~11 mg C L-1 if a 10-μL loop was used). Analyses of sodium bicarbonate or calcium carbonate solutions had a two-fold lower accuracy despite maintaining a high precision. CONCLUSIONS Aqueous solutions of international reference materials such as L-glutamic acids (USGS40, USGS41), benzoic acid (IAEA-601) and sucrose (IAEA-CH-6) can be successfully used for direct normalization of results to the VPDB scale. By contrast, analyses of caffeine and urea returned very reproducible but highly inaccurate results and these materials are not recommended for standards.
Collapse
Affiliation(s)
- Grzegorz Skrzypek
- West Australian Biogeochemistry Centre, School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia
| | - Douglas Ford
- West Australian Biogeochemistry Centre, School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia
| |
Collapse
|
24
|
Compound-Specific Carbon Isotopes and Concentrations of Carbohydrates and Organic Acids as Indicators of Tree Decline in Mountain Pine. FORESTS 2018. [DOI: 10.3390/f9060363] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
25
|
Lehmann MM, Goldsmith GR, Schmid L, Gessler A, Saurer M, Siegwolf RTW. The effect of 18 O-labelled water vapour on the oxygen isotope ratio of water and assimilates in plants at high humidity. THE NEW PHYTOLOGIST 2018; 217:105-116. [PMID: 28940549 DOI: 10.1111/nph.14788] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2017] [Accepted: 08/12/2017] [Indexed: 06/07/2023]
Abstract
Our understanding of how temporal variations of atmospheric water vapour and its isotopic composition (δ18 OV ) influence water and assimilates in plants remains limited, restricting our ability to use δ18 O as a tracer of ecophysiological processes. We exposed oak (Quercus robur) saplings under wet and dry soil moisture conditions to 18 O-depleted water vapour (c. - 200‰) at high relative humidity (c. 93%) for 5 h, simulating a fog event. We then traced the step change in δ18 OV into water and assimilates (e.g. sucrose, hexoses, quercitol and starch) in the leaf lamina, main veins and twigs over 24 h. The immediate δ18 OV effect was highest for δ18 O of leaf lamina water, but 40% lower on δ18 O of main vein water. To a smaller extent, we also observed changes in δ18 O of twig xylem water. Depending on the individual assimilation rate of each plant, the 18 O-label was partitioned among different assimilates, with highest changes in δ18 O of starch/sucrose and lowest in δ18 O of quercitol. Additionally, 18 O-label partitioning and allocation towards leaf starch and twig phloem sugars was influenced by the plant water status. Our results have important implications for water isotope heterogeneity in plants and for our understanding of how the δ18 O signal is incorporated into biomarkers.
Collapse
Affiliation(s)
- Marco M Lehmann
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), 5232, Villigen, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), 8903, Birmensdorf, Switzerland
| | - Gregory R Goldsmith
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), 5232, Villigen, Switzerland
- Schmid College of Science and Technology, Chapman University, Orange, CA, 92866, USA
| | - Lola Schmid
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), 5232, Villigen, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), 8903, Birmensdorf, Switzerland
| | - Arthur Gessler
- Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), 8903, Birmensdorf, Switzerland
| | - Matthias Saurer
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), 5232, Villigen, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), 8903, Birmensdorf, Switzerland
| | - Rolf T W Siegwolf
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), 5232, Villigen, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), 8903, Birmensdorf, Switzerland
| |
Collapse
|
26
|
Galiano L, Timofeeva G, Saurer M, Siegwolf R, Martínez-Vilalta J, Hommel R, Gessler A. The fate of recently fixed carbon after drought release: towards unravelling C storage regulation in Tilia platyphyllos and Pinus sylvestris. PLANT, CELL & ENVIRONMENT 2017; 40:1711-1724. [PMID: 28432768 DOI: 10.1111/pce.12972] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2017] [Revised: 04/04/2017] [Accepted: 04/07/2017] [Indexed: 06/07/2023]
Abstract
Carbon reserves are important for maintaining tree function during and after stress. Increasing tree mortality driven by drought globally has renewed the interest in how plants regulate allocation of recently fixed C to reserve formation. Three-year-old seedlings of two species (Tilia platyphyllos and Pinus sylvestris) were exposed to two intensities of experimental drought during ~10 weeks, and 13 C pulse labelling was subsequently applied with rewetting. Tracking the 13 C label across different organs and C compounds (soluble sugars, starch, myo-inositol, lipids and cellulose), together with the monitoring of gas exchange and C mass balances over time, allowed for the identification of variations in C allocation priorities and tree C balances that are associated with drought effects and subsequent drought release. The results demonstrate that soluble sugars accumulated in P. sylvestris under drought conditions independently of growth trends; thus, non-structural carbohydrates (NSC) formation cannot be simply considered a passive overflow process in this species. Once drought ceased, C allocation to storage was still prioritized at the expense of growth, which suggested the presence of 'drought memory effects', possibly to ensure future growth and survival. On the contrary, NSC and growth dynamics in T. platyphyllos were consistent with a passive (overflow) view of NSC formation.
Collapse
Affiliation(s)
- Lucía Galiano
- Swiss Federal Research Institute WSL, Birmensdorf, CH-8903, Switzerland
- Institute of Hydrology, University of Freiburg, Freiburg, D-79098, Germany
| | - Galina Timofeeva
- Swiss Federal Research Institute WSL, Birmensdorf, CH-8903, Switzerland
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute PSI, Villigen, CH-5232, Switzerland
- Forest Ecology, Department of Environmental Systems Science, Institute of Terrestrial Ecosystems, ETH Zürich, Zürich, CH-8092, Switzerland
| | - Matthias Saurer
- Swiss Federal Research Institute WSL, Birmensdorf, CH-8903, Switzerland
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute PSI, Villigen, CH-5232, Switzerland
| | - Rolf Siegwolf
- Swiss Federal Research Institute WSL, Birmensdorf, CH-8903, Switzerland
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute PSI, Villigen, CH-5232, Switzerland
| | - Jordi Martínez-Vilalta
- CREAF, Cerdanyola del Vallès, E-08193, Spain
- Autonomous University of Barcelona UAB, Cerdanyola del Vallès, E-08193, Spain
| | - Robert Hommel
- Eberswalde University of Sustainable Development, Schicklerstraße 5, 16225, Eberswalde, Germany
| | - Arthur Gessler
- Swiss Federal Research Institute WSL, Birmensdorf, CH-8903, Switzerland
| |
Collapse
|
27
|
Lehmann MM, Gamarra B, Kahmen A, Siegwolf RTW, Saurer M. Oxygen isotope fractionations across individual leaf carbohydrates in grass and tree species. PLANT, CELL & ENVIRONMENT 2017; 40:1658-1670. [PMID: 28436078 DOI: 10.1111/pce.12974] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2016] [Revised: 04/12/2017] [Accepted: 04/14/2017] [Indexed: 06/07/2023]
Abstract
Almost no δ18 O data are available for leaf carbohydrates, leaving a gap in the understanding of the δ18 O relationship between leaf water and cellulose. We measured δ18 O values of bulk leaf water (δ18 OLW ) and individual leaf carbohydrates (e.g. fructose, glucose and sucrose) in grass and tree species and δ18 O of leaf cellulose in grasses. The grasses were grown under two relative humidity (rH) conditions. Sucrose was generally 18 O-enriched compared with hexoses across all species with an apparent biosynthetic fractionation factor (εbio ) of more than 27‰ relative to δ18 OLW , which might be explained by isotopic leaf water and sucrose synthesis gradients. δ18 OLW and δ18 O values of carbohydrates and cellulose in grasses were strongly related, indicating that the leaf water signal in carbohydrates was transferred to cellulose (εbio = 25.1‰). Interestingly, damping factor pex px , which reflects oxygen isotope exchange with less enriched water during cellulose synthesis, responded to rH conditions if modelled from δ18 OLW but not if modelled directly from δ18 O of individual carbohydrates. We conclude that δ18 OLW is not always a good substitute for δ18 O of synthesis water due to isotopic leaf water gradients. Thus, compound-specific δ18 O analyses of individual carbohydrates are helpful to better constrain (post-)photosynthetic isotope fractionation processes in plants.
Collapse
Affiliation(s)
- Marco M Lehmann
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), Villigen, CH-5232, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, CH-8903, Switzerland
| | - Bruno Gamarra
- Institute of Agricultural Sciences, ETH Zurich, Zurich, CH-8092, Switzerland
| | - Ansgar Kahmen
- Department of Environmental Sciences - Botany, University of Basel, Basel, CH-4056, Switzerland
| | - Rolf T W Siegwolf
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), Villigen, CH-5232, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, CH-8903, Switzerland
| | - Matthias Saurer
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), Villigen, CH-5232, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, CH-8903, Switzerland
| |
Collapse
|
28
|
Lehmann MM, Wegener F, Werner RA, Werner C. Diel variations in carbon isotopic composition and concentration of organic acids and their impact on plant dark respiration in different species. PLANT BIOLOGY (STUTTGART, GERMANY) 2016; 18:776-84. [PMID: 27086877 DOI: 10.1111/plb.12464] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2016] [Accepted: 04/13/2016] [Indexed: 05/19/2023]
Abstract
Leaf respiration in the dark and its C isotopic composition (δ(13) CR ) contain information about internal metabolic processes and respiratory substrates. δ(13) CR is known to be less negative compared to potential respiratory substrates, in particular shortly after darkening during light enhanced dark respiration (LEDR). This phenomenon might be driven by respiration of accumulated (13) C-enriched organic acids, however, studies simultaneously measuring δ(13) CR during LEDR and potential respiratory substrates are rare. We determined δ(13) CR and respiration rates (R) during LEDR, as well as δ(13) C and concentrations of potential respiratory substrates using compound-specific isotope analyses. The measurements were conducted throughout the diel cycle in several plant species under different environmental conditions. δ(13) CR and R patterns during LEDR were strongly species-specific and showed an initial peak, which was followed by a progressive decrease in both values. The species-specific differences in δ(13) CR and R during LEDR may be partially explained by the isotopic composition of organic acids (e.g., oxalate, isocitrate, quinate, shikimate, malate), which were (13) C-enriched compared to other respiratory substrates (e.g., sugars and amino acids). However, the diel variations in both δ(13) C and concentrations of the organic acids were generally low. Thus, additional factors such as the heterogeneous isotope distribution in organic acids and the relative contribution of the organic acids to respiration are required to explain the strong (13) C enrichment in leaf dark-respired CO2 .
Collapse
Affiliation(s)
- M M Lehmann
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), Villigen, Switzerland
- Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - F Wegener
- Ecosystem Physiology, University Freiburg, Freiburg, Germany
| | - R A Werner
- Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - C Werner
- Ecosystem Physiology, University Freiburg, Freiburg, Germany
| |
Collapse
|
29
|
Saurer M, Kirdyanov AV, Prokushkin AS, Rinne KT, Siegwolf RTW. The impact of an inverse climate-isotope relationship in soil water on the oxygen-isotope composition of Larix gmelinii in Siberia. THE NEW PHYTOLOGIST 2016; 209:955-964. [PMID: 26610186 DOI: 10.1111/nph.13759] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Accepted: 10/03/2015] [Indexed: 06/05/2023]
Abstract
Stable oxygen isotope ratios (δ(18) O) in trees from high latitude ecosystems are valuable sources of information for recent and past environmental changes, but the interpretation is hampered by the complex hydrology of forests growing under permafrost conditions, where only a shallow layer of soil thaws in summer. We investigated larch trees (Larix gmelinii) at two sites with contrasting soil conditions in Siberia and determined δ(18) O of water from different soil depths, roots, twigs, and needles as well as δ(18) O of soluble carbohydrates regularly over two growing seasons. A comparison of results from the 2 yrs revealed an unexpected 'inverse' climate-isotope relationship, as dry and warm summer conditions resulted in lower soil and root δ(18) O values. This was due to a stronger uptake of isotopically depleted water pools originating from melted permafrost or previous winter snow. We developed a conceptual framework that considers the dependence of soil water profiles on climatic conditions for explaining δ(18) O in needle water, needle soluble carbohydrates and stem cellulose. The negative feedback of drought conditions on the source isotope value could explain decreasing tree-ring δ(18) O trends in a warming climate and is likely relevant in many ecosystems, where a soil isotope gradient with depth is observed.
Collapse
Affiliation(s)
- Matthias Saurer
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute, Villigen, 5232, Switzerland
| | - Alexander V Kirdyanov
- V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Sciences, Krasnoyarsk, 660036, Russia
| | - Anatoly S Prokushkin
- V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Sciences, Krasnoyarsk, 660036, Russia
| | - Katja T Rinne
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute, Villigen, 5232, Switzerland
| | - Rolf T W Siegwolf
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute, Villigen, 5232, Switzerland
| |
Collapse
|
30
|
Lehmann MM, Fischer M, Blees J, Zech M, Siegwolf RTW, Saurer M. A novel methylation derivatization method for δ(18)O analysis of individual carbohydrates by gas chromatography/pyrolysis-isotope ratio mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2016; 30:221-229. [PMID: 26661989 DOI: 10.1002/rcm.7431] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Revised: 10/19/2015] [Accepted: 10/19/2015] [Indexed: 06/05/2023]
Abstract
RATIONALE The oxygen isotope ratio (δ(18)O) of carbohydrates derived from animals, plants, sediments, and soils provides important information about biochemical and physiological processes, past environmental conditions, and geographical origins, which are otherwise not available. Nowadays, δ(18)O analyses are often performed on carbohydrate bulk material, while compound-specific δ(18)O analyses remain challenging and methods for a wide range of individual carbohydrates are rare. METHODS To improve the δ(18)O analysis of individual carbohydrates by gas chromatography/pyrolysis-isotope ratio mass spectrometry (GC/Pyr-IRMS) we developed a new methylation derivatization method. Carbohydrates were fully methylated within 24 h in an easy-to-handle one-pot reaction in acetonitrile, using silver oxide as proton acceptor, methyl iodide as methyl group carrier, and dimethyl sulfide as catalyst. RESULTS The precision of the method ranged between 0.12 and 1.09‰ for the δ(18)O values of various individual carbohydrates of different classes (mono-, di-, and trisaccharides, alditols), with an accuracy of a similar order of magnitude, despite high variation in peak areas. Based on the δ(18)O values of the main isomers, important monosaccharides such as glucose and fructose could also be precisely analyzed for the first time. We tested the method on standard mixtures, honey samples, and leaf carbohydrates extracted from Pinus sylvestris, showing that the method is also applicable to different carbohydrate mixtures. CONCLUSIONS The new methylation method shows unrivalled accuracy and precision for δ(18)O analysis of various individual carbohydrates; it is fast and easy-to-handle, and may therefore find wide-spread application.
Collapse
Affiliation(s)
- Marco M Lehmann
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute, PSI, CH-5232, Villigen, Switzerland
| | - Maria Fischer
- Laboratory of Nanoscale Materials Science, Empa, Überlandstrasse 129, CH-8600, Dübendorf, Switzerland
| | - Jan Blees
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute, PSI, CH-5232, Villigen, Switzerland
| | - Michael Zech
- Department of Soil Biogeochemistry, Martin-Luther-University Halle Wittenberg, Von-Seckendorff-Platz 3, D-06120, Halle, Germany
| | - Rolf T W Siegwolf
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute, PSI, CH-5232, Villigen, Switzerland
| | - Matthias Saurer
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute, PSI, CH-5232, Villigen, Switzerland
| |
Collapse
|
31
|
Rinne KT, Saurer M, Kirdyanov AV, Loader NJ, Bryukhanova MV, Werner RA, Siegwolf RTW. The relationship between needle sugar carbon isotope ratios and tree rings of larch in Siberia. TREE PHYSIOLOGY 2015; 35:1192-1205. [PMID: 26433019 DOI: 10.1093/treephys/tpv096] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2015] [Accepted: 08/17/2015] [Indexed: 06/05/2023]
Abstract
Significant gaps still exist in our knowledge about post-photosynthetic leaf level and downstream metabolic processes and isotopic fractionations. This includes their impact on the isotopic climate signal stored in the carbon isotope composition (δ(13)C) of leaf assimilates and tree rings. For the first time, we compared the seasonal δ(13)C variability of leaf sucrose with intra-annual, high-resolution δ(13)C signature of tree rings from larch (Larix gmelinii Rupr.). The trees were growing at two sites in the continuous permafrost zone of Siberia with different growth conditions. Our results indicate very similar low-frequency intra-seasonal trends of the sucrose and tree ring δ(13)C records with little or no indication for the use of 'old' photosynthates formed during the previous year(s). The comparison of leaf sucrose δ(13)C values with that in other leaf sugars and in tree rings elucidates the cause for the reported (13)C-enrichment of sink organs compared with leaves. We observed that while the average δ(13)C of all needle sugars was 1.2‰ more negative than δ(13)C value of wood, the δ(13)C value of the transport sugar sucrose was on an average 1.0‰ more positive than that of wood. Our study shows a high potential of the combined use of compound-specific isotope analysis of sugars (leaf and phloem) with intra-annual tree ring δ(13)C measurements for deepening our understanding about the mechanisms controlling the isotope variability in tree rings under different environmental conditions.
Collapse
Affiliation(s)
- K T Rinne
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232 Villigen, Switzerland Present address: Natural Resources Institute Finland, PO Box 18, FI-01301 Vantaa, Finland
| | - M Saurer
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232 Villigen, Switzerland
| | - A V Kirdyanov
- V.N. Sukachev Institute of Forest SB RAS, Akademgorodok, Krasnoyarsk 660036, Russia
| | - N J Loader
- Department of Geography, Swansea University, Singleton Park, Swansea SA2 8PP, UK
| | - M V Bryukhanova
- V.N. Sukachev Institute of Forest SB RAS, Akademgorodok, Krasnoyarsk 660036, Russia
| | - R A Werner
- Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - R T W Siegwolf
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232 Villigen, Switzerland
| |
Collapse
|
32
|
Rinne KT, Saurer M, Kirdyanov AV, Bryukhanova MV, Prokushkin AS, Churakova Sidorova OV, Siegwolf RTW. Examining the response of needle carbohydrates from Siberian larch trees to climate using compound-specific δ(13) C and concentration analyses. PLANT, CELL & ENVIRONMENT 2015; 38:2340-2352. [PMID: 25916312 DOI: 10.1111/pce.12554] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2015] [Revised: 03/17/2015] [Accepted: 04/06/2015] [Indexed: 06/04/2023]
Abstract
Little is known about the dynamics of concentrations and carbon isotope ratios of individual carbohydrates in leaves in response to climatic and physiological factors. Improved knowledge of the isotopic ratio in sugars will enhance our understanding of the tree ring isotope ratio and will help to decipher environmental conditions in retrospect more reliably. Carbohydrate samples from larch (Larix gmelinii) needles of two sites in the continuous permafrost zone of Siberia with differing growth conditions were analysed with the Compound-Specific Isotope Analysis (CSIA). We compared concentrations and carbon isotope values (δ(13) C) of sucrose, fructose, glucose and pinitol combined with phenological data. The results for the variability of the needle carbohydrates show high dynamics with distinct seasonal characteristics between and within the studied years with a clear link to the climatic conditions, particularly vapour pressure deficit. Compound-specific differences in δ(13) C values as a response to climate were detected. The δ(13) C of pinitol, which contributes up to 50% of total soluble carbohydrates, was almost invariant during the whole growing season. Our study provides the first in-depth characterization of compound-specific needle carbohydrate isotope variability, identifies involved mechanisms and shows the potential of such results for linking tree physiological responses to different climatic conditions.
Collapse
Affiliation(s)
- K T Rinne
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232, Villigen, Switzerland
| | - M Saurer
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232, Villigen, Switzerland
| | - A V Kirdyanov
- V.N. Sukachev Institute of Forest SB RAS, Akademgorodok, Krasnoyarsk, 660036, Russia
| | - M V Bryukhanova
- V.N. Sukachev Institute of Forest SB RAS, Akademgorodok, Krasnoyarsk, 660036, Russia
| | - A S Prokushkin
- V.N. Sukachev Institute of Forest SB RAS, Akademgorodok, Krasnoyarsk, 660036, Russia
| | | | - R T W Siegwolf
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232, Villigen, Switzerland
| |
Collapse
|
33
|
Lehmann MM, Rinne KT, Blessing C, Siegwolf RTW, Buchmann N, Werner RA. Malate as a key carbon source of leaf dark-respired CO2 across different environmental conditions in potato plants. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:5769-81. [PMID: 26139821 PMCID: PMC4566975 DOI: 10.1093/jxb/erv279] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Dissimilation of carbon sources during plant respiration in support of metabolic processes results in the continuous release of CO2. The carbon isotopic composition of leaf dark-respired CO2 (i.e. δ (13) C R ) shows daily enrichments up to 14.8‰ under different environmental conditions. However, the reasons for this (13)C enrichment in leaf dark-respired CO2 are not fully understood, since daily changes in δ(13)C of putative leaf respiratory carbon sources (δ (13) C RS ) are not yet clear. Thus, we exposed potato plants (Solanum tuberosum) to different temperature and soil moisture treatments. We determined δ (13) C R with an in-tube incubation technique and δ (13) C RS with compound-specific isotope analysis during a daily cycle. The highest δ (13) C RS values were found in the organic acid malate under different environmental conditions, showing less negative values compared to δ (13) C R (up to 5.2‰) and compared to δ (13) C RS of soluble carbohydrates, citrate and starch (up to 8.8‰). Moreover, linear relationships between δ (13) C R and δ (13) C RS among different putative carbon sources were strongest for malate during daytime (r(2)=0.69, P≤0.001) and nighttime (r(2)=0.36, P≤0.001) under all environmental conditions. A multiple linear regression analysis revealed δ (13) C RS of malate as the most important carbon source influencing δ (13) C R . Thus, our results strongly indicate malate as a key carbon source of (13)C enriched dark-respired CO2 in potato plants, probably driven by an anapleurotic flux replenishing intermediates of the Krebs cycle.
Collapse
Affiliation(s)
- Marco M Lehmann
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232 Villigen, Switzerland Institute of Agricultural Sciences, ETH Zurich, Universitaetsstr. 2, CH-8092 Zurich, Switzerland
| | - Katja T Rinne
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232 Villigen, Switzerland
| | - Carola Blessing
- Institute of Agricultural Sciences, ETH Zurich, Universitaetsstr. 2, CH-8092 Zurich, Switzerland
| | - Rolf T W Siegwolf
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232 Villigen, Switzerland
| | - Nina Buchmann
- Institute of Agricultural Sciences, ETH Zurich, Universitaetsstr. 2, CH-8092 Zurich, Switzerland
| | - Roland A Werner
- Institute of Agricultural Sciences, ETH Zurich, Universitaetsstr. 2, CH-8092 Zurich, Switzerland
| |
Collapse
|
34
|
Sić S, Maier NM, Rizzi AM. Quantitative fingerprinting of O-linked glycans released from proteins using isotopic coded labeling with deuterated 1-phenyl-3-methyl-5-pyrazolone. J Chromatogr A 2015; 1408:93-100. [PMID: 26184710 DOI: 10.1016/j.chroma.2015.06.065] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2015] [Revised: 06/25/2015] [Accepted: 06/25/2015] [Indexed: 02/02/2023]
Abstract
Investigation of oligosaccharides attached to proteins as post-translational modification remains an important research field in the area of glycoproteomics as well as in biotechnology. The development of new tools for qualitative and quantitative analysis of glycans has gained high importance in recent years. This is particularly true with O-glycans for which quantitative data are still underrepresented in literature. This fact is probably due to the absence of an enzyme for general release of O-linked saccharides from glycoproteins and due to their low ionization yield in mass spectrometry (MS). In this paper, a method is established aimed at improved qualitative and quantitative analysis of mucin-type O-glycans. A chemical reaction combining release and derivatization of O-glycans in one step is combined here with mass spectrometric quantification. For the purpose of improved quantitative analysis, stable-isotope coded labeling by d0/d5 1-phenyl-3-methyl-5-pyrazolidone (PMP) was performed. The "heavy"-version of this label, penta-deutero (d5)-PMP, was synthesized for this purpose. Beneath improving the reproducibility of quantitation, PMP derivatization contributed to an enhancement of ionization yields in MS. By introducing an internal standard (e.g. GlcNAc3) the reproducibility for quantification can be improved. For higher abundant O-glycans a mean coefficient of variation (CV) less than 6% could be attained, for very low abundant CV values between 15 and 20%. For the determination of O-glycan profiles in mixtures, a HPLC separation was combined with a high resolution Qq-oaTOF instrument. RP-type stationary phases were successful in separating glycan species including some of isomeric ones. This separation step was particularly useful for removing of salts avoiding so the presence of various sodium clusters in the MS spectrum.
Collapse
Affiliation(s)
- Siniša Sić
- Department of Analytical Chemistry, University of Vienna, Währinger Straße 38, A-1090 Vienna, Austria
| | - Norbert M Maier
- Department of Analytical Chemistry, University of Vienna, Währinger Straße 38, A-1090 Vienna, Austria
| | - Andreas M Rizzi
- Department of Analytical Chemistry, University of Vienna, Währinger Straße 38, A-1090 Vienna, Austria.
| |
Collapse
|
35
|
Jackson GP, An Y, Konstantynova KI, Rashaid AH. Biometrics from the carbon isotope ratio analysis of amino acids in human hair. Sci Justice 2015; 55:43-50. [DOI: 10.1016/j.scijus.2014.07.002] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/07/2014] [Revised: 06/30/2014] [Accepted: 07/28/2014] [Indexed: 11/29/2022]
|
36
|
Dippold MA, Boesel S, Gunina A, Kuzyakov Y, Glaser B. Improved δ(13)C analysis of amino sugars in soil by ion chromatography-oxidation-isotope ratio mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2014; 28:569-576. [PMID: 24519819 DOI: 10.1002/rcm.6814] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2013] [Revised: 10/26/2013] [Accepted: 12/21/2013] [Indexed: 06/03/2023]
Abstract
RATIONALE Amino sugars build up microbial cell walls and are important components of soil organic matter. To evaluate their sources and turnover, δ(13)C analysis of soil-derived amino sugars by liquid chromatography was recently suggested. However, amino sugar δ(13)C determination remains challenging due to (1) a strong matrix effect, (2) CO2 -binding by alkaline eluents, and (3) strongly different chromatographic behavior and concentrations of basic and acidic amino sugars. To overcome these difficulties we established an ion chromatography-oxidation-isotope ratio mass spectrometry method to improve and facilitate soil amino sugar analysis. METHODS After acid hydrolysis of soil samples, the extract was purified from salts and other components impeding chromatographic resolution. The amino sugar concentrations and δ(13)C values were determined by coupling an ion chromatograph to an isotope ratio mass spectrometer. The accuracy and precision of quantification and δ(13)C determination were assessed. RESULTS Internal standards enabled correction for losses during analysis, with a relative standard deviation <6%. The higher magnitude peaks of basic than of acidic amino sugars required an amount-dependent correction of δ(13)C values. This correction improved the accuracy of the determination of δ(13)C values to <1.5‰ and the precision to <0.5‰ for basic and acidic amino sugars in a single run. CONCLUSIONS This method enables parallel quantification and δ(13)C determination of basic and acidic amino sugars in a single chromatogram due to the advantages of coupling an ion chromatograph to the isotope ratio mass spectrometer. Small adjustments of sample amount and injection volume are necessary to optimize precision and accuracy for individual soils.
Collapse
Affiliation(s)
- Michaela A Dippold
- Department of Agroecosystem Research, BayCEER, University of Bayreuth, Germany; Department of Soil Biochemistry, Institute of Agricultural and Nutritional Science, Martin-Luther University Halle-Wittenberg, Germany; Department of Agricultural Soil Science, University of Göttingen, Germany
| | | | | | | | | |
Collapse
|
37
|
Basler A, Dyckmans J. Compound-specific δ 13 C analysis of monosaccharides from soil extracts by high-performance liquid chromatography/isotope ratio mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2013; 27:2546-2550. [PMID: 24123643 DOI: 10.1002/rcm.6717] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2013] [Revised: 08/20/2013] [Accepted: 08/21/2013] [Indexed: 06/02/2023]
Abstract
RATIONALE Carbohydrates represent up to 25% of soil organic matter and derive from fresh plant input or organic matter transformation within the soil. Compound-specific isotope analysis (CSIA) of monosaccharides (sugars) extracted from soil provides a powerful tool to disentangle the dynamics of different carbohydrate pools of soils. The use of high-performance liquid chromatography/oxidation/isotope ratio mass spectrometry (HPLC/o/IRMS) allows isotope measurements without the need for derivatisation and thus increasing accuracy and precision of the isotopic measurement, compared with gas chromatography/combustion/isotope ratio mass spectrometry (GC/c/IRMS). METHODS The CSIA of soil carbohydrates was performed using a HPLC/o/IRMS system. The chromatographic and mass spectrometric subunits were coupled with a LC-Isolink interface. Soil sugars were extracted after mild hydrolysis using 4 M trifluoroacetic acid (TFA). Chromatographic separation of the sugars was achieved using a low strength 0.25 mM NaOH solution as mobile phase at a flow rate of 250 μL min-1 at 10 °C. RESULTS The chromatographic conditions allowed the baseline separation of the seven most abundant sugars in soil. Complete removal of TFA from the soil hydrolysate ensured chromatographic stability. The accuracy was better than 0.66 ‰ for amounts of >2.5 nM sugar on column. The sugars extracted from an agricultural soil appeared to be more enriched in 13 C than the soil organic carbon, and to have a similar isotopic signature to the soil microbial biomass. CONCLUSIONS The proposed method proved to be suitable for the analysis of the common sugars in soil extracts and represents a precise tool for the study of carbohydrate dynamics. Copyright © 2013 John Wiley & Sons, Ltd.
Collapse
Affiliation(s)
- A Basler
- Centre for Stable Isotope Research and Analysis, Büsgen Institute, University of Göttingen, Büsgenweg 2, 37077, Göttingen, Germany
| | | |
Collapse
|
38
|
Streit K, Rinne KT, Hagedorn F, Dawes MA, Saurer M, Hoch G, Werner RA, Buchmann N, Siegwolf RTW. Tracing fresh assimilates through Larix decidua exposed to elevated CO₂ and soil warming at the alpine treeline using compound-specific stable isotope analysis. THE NEW PHYTOLOGIST 2013; 197:838-849. [PMID: 23252478 DOI: 10.1111/nph.12074] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2012] [Accepted: 10/29/2012] [Indexed: 06/01/2023]
Abstract
How will carbon source-sink relations of 35-yr-old larch trees (Larix decidua) at the alpine treeline respond to changes in atmospheric CO(2) and climate? We evaluated the effects of previously elevated CO(2) concentrations (9 yr, 580 ppm, ended the previous season) and ongoing soil warming (4 yr, + 4°C). Larch branches were pulse labeled (50 at% (13)CO(2)) in July 2010 to trace fresh assimilates through tissues (buds, needles, bark and wood) and non-structural carbon compounds (NCC; starch, lipids, individual sugars) using compound-specific isotope analysis. Nine years of elevated CO(2) did not lead to increased NCC concentrations, nor did soil warming increase NCC transfer velocities. By contrast, we found slower transfer velocities and higher NCC concentrations than reported in the literature for lowland larch. As a result of low dilution with older carbon, sucrose and glucose showed the highest maximum (13)C labels, whereas labels were lower for starch, lipids and pinitol. Label residence times in needles were shorter for sucrose and starch (c. 2 d) than for glucose (c. 6 d). Although our treatments showed no persistent effect on larch carbon relations, low temperature at high altitudes clearly induced a limitation of sink activities (growth, respiration, root exudation), expressed in slower carbon transfer and higher NCC concentrations.
Collapse
Affiliation(s)
- Kathrin Streit
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232, Villigen, Switzerland
| | - Katja T Rinne
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232, Villigen, Switzerland
| | - Frank Hagedorn
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Zürcherstrasse 111, CH-8903, Birmensdorf, Switzerland
| | - Melissa A Dawes
- Mountain Ecosystems, WSL Institute for Snow and Avalanche Research (SLF), Flüelastrasse 11, CH-7260, Davos Dorf, Switzerland
| | - Matthias Saurer
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232, Villigen, Switzerland
| | - Günter Hoch
- Institute of Botany, University of Basel, Schönbeinstrasse 6, CH-4056, Basel, Switzerland
| | - Roland A Werner
- Institute of Agricultural Sciences, ETH Zurich, Universitätsstrasse 2, CH-8092, Zurich, Switzerland
| | - Nina Buchmann
- Institute of Agricultural Sciences, ETH Zurich, Universitätsstrasse 2, CH-8092, Zurich, Switzerland
| | - Rolf T W Siegwolf
- Laboratory of Atmospheric Chemistry, Paul Scherrer Institute (PSI), CH-5232, Villigen, Switzerland
| |
Collapse
|
39
|
Zech M, Saurer M, Tuthorn M, Rinne K, Werner RA, Siegwolf R, Glaser B, Juchelka D. A novel methodological approach for δ(18)O analysis of sugars using gas chromatography-pyrolysis-isotope ratio mass spectrometry. ISOTOPES IN ENVIRONMENTAL AND HEALTH STUDIES 2013; 49:492-502. [PMID: 24313371 DOI: 10.1080/10256016.2013.824875] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Although the instrumental coupling of gas chromatography-pyrolysis-isotope ratio mass spectrometry (GC-Py-IRMS) for compound-specific δ(18)O analysis has been commercially available for more than a decade, this method has been hardly applied so far. Here we present the first GC-Py-IRMS δ(18)O results for trimethylsilyl-derivatives of plant sap-relevant sugars and a polyalcohol (glucose, fructose, sucrose, raffinose and pinitol). Particularly, we focus on sucrose, which is assimilated in leaves and which is the most important transport sugar in plants and hence of utmost relevance in plant physiology and paleoclimate studies. Replication measurements of sucrose standards and concentration series indicate that the GC-Py-IRMS δ(18)O measurements are not stable over time and that they are amount (area) dependent. We, therefore, suggest running sample batch replication measurements in alternation with standard concentration series of reference material. This allows for carrying out (i) a drift correction, (ii) a calibration against reference material and (iii) an amount (area) correction. Tests with (18)O-enriched water do not provide any evidence for oxygen isotope exchange reactions affecting sucrose and raffinose. We present the first application of GC-Py-IRMS δ(18)O analysis for sucrose from needle extract (soluble carbohydrate) samples. The obtained δ(18)Osucrose/ Vienna Standard Mean Ocean Water (VSMOW) values are more positive and vary in a wider range (32.1-40.1 ‰) than the δ(18)Obulk/ VSMOW values (24.6-27.2 ‰). Furthermore, they are shown to depend on the climate parameters maximum day temperature, relative air humidity and cloud cover. These findings suggest that δ(18)Osucrose of the investigated needles very sensitively reflects the climatically controlled evaporative (18)O enrichment of leaf water and thus highlights the great potential of GC-Py-IRMS δ(18)Osucrose analysis for plant physiology and paleoclimate studies.
Collapse
Affiliation(s)
- Michael Zech
- a Department of Soil Physics and Chair of Geomorphology , University of Bayreuth , Bayreuth , Germany
| | | | | | | | | | | | | | | |
Collapse
|