Frequently asked questions about chlorophyll fluorescence, the sequel

High and unique carbonic anhydrase activity of Photosystem II from Pisum sativum: Measurements by a new and very sensitive fluorescence method

Carbonic anhydrase (CA) activity, associated with Photosystem II (PSII), has been shown to enhance water oxidation. However, CA activity was thought to be a side effect or even a "contamination" of other CAs because of the relatively low rates of CA reactions in PSII measured previously. Here, by using 8-hydroxy-pyrene-1,3,6-trisulfonate (pyranine), a fluorescent dye, as a pH indicator, we show that PSII preparations (∗∗BBYs) from Pisum sativum have a high CA activity (as measured by HCO3- dehydration), which is close to that of highly active CAs. This fluorescence method is new for BBYs giving at least ten times higher activity than the other methods used earlier, as well as being highly sensitive and, thus, more convenient to use for BBYs than any other approach. We show here that the pH range of 5.0-7.5 is optimum for the pyranine measuring system, in general, and this pH range is suitable not only for the CA in BBYs but also for other CAs. Further, the CA activity of BBYs has the following unique properties: (1) low sensitivity to some known, and otherwise, effective CA inhibitors; (2) an opposite pH profile of HCO3- dehydration than observed in other known CAs. These findings indicate that the high CA activity, we have observed, belongs to BBYs, i.e., free of other CAs. At pH 6.5, CA activity of BBYs is shown to be directly correlated with that of photosynthetic O2 evolution. We propose that the CA activity may accelerate the removal of H+s during water oxidation. # Celebrating 80th birthday of Alan James Stemler, a pioneer on the role of bicarbonate on the electron donor side of Photosystem II. S.G. Vaklinova & associates (1982), and A.J. Stemler (1986) were the first who have measured carbonic anhydrase activity in Photosystem II preparations. ∗∗ BBYs stand for Photosystem II samples made by the procedure of Berthold (B), Babcock (B) and Yocum (Y); see Berthold et al. (1981).

The Soil-Plant Continuity of Rare Earth Elements: Insights into an Enigmatic Class of Xenobiotics and Their Interactions with Plant Structures and Processes

Rare earth elements (REEs) are increasingly present in the environment owing to their extensive use in modern industries, yet their interactions with plants remain poorly understood. This review explores the soil-plant continuum of REEs, focusing on their geochemical behavior in soil, the mechanisms of plant uptake, and fractionation processes. While REEs are not essential for plant metabolism, they interact with plant structures and interfere with the normal functioning of biological macromolecules. Accordingly, the influence of REEs on the fundamental physiological functions of plants is reviewed, including calcium-mediated signalling and plant morphogenesis. Special attention is paid to the interaction of REEs with photosynthetic machinery and, particularly, the thylakoid membrane. By examining both the beneficial effects at low concentrations and toxicity at higher levels, this review provides some mechanistic insights into the hormetic action of REEs. It is recommended that future research should address knowledge gaps related to the bioavailability of REEs to plants, as well as the short- and long-range transport mechanisms responsible for REE fractionation. A better understanding of REE-plant interactions will be critical in regard to assessing their ecological impact and the potential risks in terms of agricultural and natural ecosystems, to ensure that the benefits of using REEs are not at the expense of environmental integrity or human health.

Physiological and biochemical response of mixed lupine and barley cultures under changing environmental conditions during spring

Mixed cultivation of grass-legume forage crops, such as lupine (Lupinus albus L.) and barley (Hordeum vulgare L.), offers significant advantages in terms of nitrogen utilization, stress resistance and a balanced diet for ruminants. This study explored the symbiotic effects of these crops on photosynthesis and stress tolerance via measuring key physiological and biochemical parameters. Measurements were performed on the photosynthetic activity, chlorophyll and carotenoid content, glycolate oxidase activity, antioxidant capacity, and total phenolic content. The varying temperatures during May, allowed the effects of mixed cultivation on the response to chilling to be analyzed. Notably, barley monoculture was the most affected by the decreased temperatures. In general, mixed culture showed mitigation of the effects from chilling, as compared with both lupine and barley monocultures alone. These results suggest an adaptive synergy between lupine and barley, highlighting the potential advantages of mixed cultivation for improving stress tolerance and overall crop performance.

The key molecular mechanisms of antagonism induced by combined exposure to erythromycin and roxithromycin in Chlorella pyrenoidosa

Emerging pollutants such as antibiotics have raised great concern in recent years, but the complex coexistence of multiple antibiotics in the environment poses a new challenge in the accurate assessment of the toxicity of antibiotics to aquatic organisms such as microalgae. In this study, the mechanism of action of a combination of erythromycin (ERY) and roxithromycin (ROX) on Chlorella pyrenoidosa was illustrated based on the physiological-biochemical response and transcriptomic analysis. The results revealed an inhibitory effect on the biomass of C. pyrenoidosa at 14 d in all treatment groups, whereas an antagonistic effect was observed in the coexposure groups. The photosystem was the main target despite the existence of multiple compensatory mechanisms, such as expanding the antenna size and initiating alternative electron carriers. The intercept of electrons on the donor side of PSI limited the production of energy, whereas the adjustment of the content and ratio of pigments strengthened microalgal adaptation. Enzymes and genes related to the degradation of exogenous compounds, including cytochrome P450 (P450), glutathione S-transferase (GST) and ABC transporters, mediated the detoxification of antibiotics. The upregulated expression of related genes induced by coexposure increased resistance and explained the antagonistic effects. The shift in energy allocation by increasing the proportion of lipids met the urgent requirements of microalgal physiological activities. This study reemphasizes the modes of interactions between multiple antibiotics and provides new insights into the mechanisms of antagonism induced by combinations of antibiotics.

Adaptive significance of age- and light-related variation in needle structure, photochemistry, and pigments in evergreen coniferous trees

Evergreen conifers thrive in challenging environments by maintaining multiple sets of needles, optimizing photosynthesis even under harsh conditions. This study aimed to investigate the relationships between needle structure, photosynthetic parameters, and age along the light gradient in the crowns of Abies alba, Taxus baccata, and Picea abies. We hypothesized that: (1) Needle structure, photochemical parameters, and photosynthetic pigment content correlate with needle age and light levels in tree crowns. (2) The photosynthetic capacity of ageing needles would decline and adjust to the increasing self-shading of branches. Our results revealed a non-linear increase in the leaf mass-to-area ratio. The maximum quantum yield of photosystem II photochemistry decreased linearly with needle age without reaching levels indicative of photoinhibition. Decreased maximum electron transport rates (ETRmax) were linked to declining values of saturating photosynthetic photon flux density and increasing non-photochemical quenching of fluorescence (NPQ), indicating energy losses as heat. The chlorophyll a to chlorophyll b ratio linearly decreased, suggesting older needles sustain high light capture efficiency. These findings offer new insights into the combined effects of needle ageing and self-shading on photochemistry and pigment content. This functional needle balance highlights the trade-off between the costs of long-term needle retention and the benefits of efficient resource utilization. In environments where air temperature is less of a constraint on photosynthesis due to climate warming, evergreen coniferous trees could sustain or enhance their photosynthetic capacity. They can achieve this by shortening needle lifespan and retaining fewer cohorts of needles with higher ETRmax and lower NPQ compared to older needles.

Evaluation of wheat drought resistance using hyperspectral and chlorophyll fluorescence imaging

Photosynthesis drives crop growth and production, and strongly affects grain yields; therefore, it is an ideal trait for wheat drought resistance breeding. However, studies of the negative effects of drought stress on wheat photosynthesis rates have lacked accurate evaluation methods, as well as high-throughput techniques. We investigated photosynthetic capacity under drought stress in wheat varieties with varying degrees of drought stress resistance using hyperspectral and chlorophyll fluorescence (ChlF) imaging data. We analyzed various morpho-physiological traits involved in wheat drought tolerance, including tiller number, leaf relative water content, and malondialdehyde content, to determine the relationships between drought resistance and hyperspectral and ChlF data. The results showed that the spectral first derivative ratio (FDR) between drought stress and control conditions in the 680-760 nm region was closely related to photosynthetic capacity and drought tolerance and that hyperspectral imaging can be used to monitor ChlF parameters, with bands sensitive to ChlF identified in two spectral regions (539-764 nm and 832-989 nm). The spectral first derivative at 989 nm had the strongest linear relationship with the minimal fluorescence (R2 = 0.49). An uninformative variable elimination algorithm indicated that FDRs in the green (504-609 nm), red (724-751 nm), and near-infrared (944-946 nm) light regions had great potential as indices of drought resistance. A support vector machine model based on the FDRs of these characteristic bands identified wheat drought resistance with 97.33% accuracy. These findings provide insight into the application of high-throughput technologies in studying drought resistance and photosynthesis in wheat.

Intermittent Supplementation with Far-Red Light Accelerates Leaf and Bud Development and Increases Yield in Lettuce

Supplementation with far-red light in controlled environment agriculture production can enhance yield by triggering the shade avoidance syndrome. However, the effectiveness of this yield enhancement can be further improved through intermittent far-red light supplementation. In this study, the effects are explored of varying far-red light photon intensities and intermittent exposure durations-specifically at 5, 15, 30, and 45 min intervals-on the growth and development of lettuce (Lactuca sativa) in plant factories, while maintaining a constant red light photon flux and daily light integral. The results showed that compared to constant far-red light, 30 min intermittent far-red light increased yield by 11.7% and the number of leaves and buds by 2.66. Furthermore, the various metrics demonstrated that intermittent far-red light supplementation enhanced the overall effectiveness of the far-red light treatment. This was validated by analyzing phytohormone content and the expression of genes related to hormone metabolism and transport at the tip of the lettuce stems. Transcriptome analysis revealed that the differences in gene expression between treatments were primarily concentrated in genes related to signaling, hormone metabolism, and transport. Weighted Gene Co-expression Network Analysis identified the co-expression modules associated with yield and quality. Additionally, dynamic expression analysis showed genes involved to far-red photoreception, response, and hormone metabolism and transport exhibited optimal rhythmic responses only under 30 min intermittent far-red light supplementation. This suggests that intermittent far-red light irradiation at 30 min intervals is the most effective for activating far-red light signaling influencing hormone metabolism and transport, thereby accelerating the growth of lettuce leaves and buds and ultimately increasing yield.

Dynamic in vivo monitoring of granum structural changes of Ctenanthe setosa (Roscoe) Eichler during drought stress and subsequent recovery

Investigating the effects of drought stress and subsequent recovery on the structure and function of chloroplasts is essential to understanding how plants adapt to environmental stressors. We investigated Ctenanthe setosa (Roscoe) Eichler, an ornamental plant that can tolerate prolonged drought periods (40 and 49 days of water withdrawal). Conventional biochemical, biophysical, physiological and (ultra)structural methods combined for the first time in a higher plant with in vivo small-angle neutron scattering (SANS) were used to characterize the alterations induced by drought stress and subsequent recovery. Upon drought stress, no significant changes occurred in the chloroplast ultrastructure, chlorophyll content, 77K fluorescence emission spectra and maximal quantum efficiency of PSII (Qy dark), but the actual quantum efficiency of PSII (Qy light) decreased, the amounts of PSI-LHCII complexes and PSII monomers declined, and that of PSII supercomplexes increased. Thickness of the leaf and of the adaxial hypodermis, chloroplast length and granum repeat distance (RD) values decreased upon drought stress, as shown by light microscopy and SANS, respectively. Because of the very slight (nm-range) changes in RD values, the large biological variability (significant differences in RD values among the leaves and studied leaf regions) and the invasive sampling required for this method, transmission electron microscopy (TEM) hardly showed significant differences. On the other side, in situ SANS analyses provided a unique insight in vivo into the fast structural recovery of the granum structure of drought-stressed leaves, which happened already 18 h after re-watering, while functional and biochemical recovery took place on a longer time scale.

Biochemical, photosynthetic and metabolomics insights of single and combined effects of salinity, heat, cold and drought in Arabidopsis

Ensuring food security is one of the main challenges related to a growing global population under climate change conditions. The increasing soil salinity levels, drought, heatwaves, and late chilling severely threaten crops and often co-occur in field conditions. This work aims to provide deeper insight into the impact of single vs. combined abiotic stresses at the growth, biochemical and photosynthetic levels in Arabidopsis thaliana (L.). Reduced QY max was recorded in salinity-stressed plants, NPQ increased in heat and salinity single and combined stresses, and qP decreased in combined stresses. MDA and H2O2 content were consistently altered under all stress conditions, but higher values were recorded under salinity alone and in combination. Salinity alone and in stress combinations (especially with cold) provided a stronger hierarchical effect. Despite glycine and GABA osmolytes not significantly changing, proline highlighted the hierarchically stronger impact of salinity, while glycine-betaine was decreased under drought combinations. Untargeted metabolomics pointed out distinct metabolic reprogramming triggered by the different stress conditions, alone or in combination. Pathway analysis revealed that abiotic stresses significantly affected hormones, amino acids and derivates, and secondary metabolites. Flavonoids accumulated under drought (alone and combined with heat and cold stresses), while N-containing compounds decreased under all combined stresses. Looking at the interactions across the parameters investigated, antagonistic, additive, or synergistic effects could be observed depending on the biochemical process considered. Notwithstanding, these results contribute to delving into the impact of various stress combinations, hierarchically highlighting the stress-specific effects and pointing out different combinations.

Photosynthetic response of Solidago gigantea Aition and Calamagrostis epigejos L. (Roth) to complex environmental stress on heavy metal contaminated sites

Studies of in situ plant response and adaptation to complex environmental stresses, are crucial for understanding the mechanisms of formation and functioning of ecosystems of anthropogenically transformed habitats. We study short- and long-term responses of photosynthetic apparatus (PSA) and anti-oxidant capacity to complex abiotic stresses of common plants Calamagrostis epigejos and Solidago gigantea in semi-natural (C) and heavy metal contaminated habitats (LZ). We found significant differences in leaf pigment content between both plant species growing on LZ plots and their respective C populations. The average values of leaf chlorophyll indexes were 27% lower in the LZ populations of both species and significantly lower in Sg plants in comparison to Ce ones. The average values of the anthocyanin index in CeLZ and SgLZ populations were significantly higher (by 18%) than in their respective controls. In both Ce and Sg plants occurring on LZ plots, the average leaf flavonol indexes were higher than on their controls by 31% and 15% and this index was significantly higher in SgLZ population than CeLZ and CeC plants (by 34% and 54%, respectively). Both Ce and Sg populations growing on LZ plots showed significantly lower photosynthetic rate (A), transpiration rate (E) and stomatal conductance (gs) in comparison to controls. On the other hand, a significantly higher photosynthetic rate was detected in SgLZ than in CeLZ populations. The catalase activities were significantly higher than recorded in Sg than in Ce tissues, irrespective of the plot type. They were also higher in LZ populations than those in controls for both species. Moreover, the H2O2 content in Sg tissues was significantly higher than those in Ce. Hydrogen peroxide content in CeLZ and SgLZ were respectively 39% (non-significant) and 57% higher, compared to their controls. The reverse pattern was found in the case of MDA, whose concentration was significantly higher in the leaves of Ce population compared to the control population. The average MDA concentration in CeLZ populations was 17% higher than in the CeC. In the case of Sg no significant differences were found. Mechanisms of plant species adaptation to industrial areas are crucial for species selection and planning effective reclamation of them. The analysis of chlorophyll fluorescence induction curves as well as well as the results of JIP test revealed the decreased of Fj value despite positive ΔK-band in SgLZ and CeLZ plants suggesting the increased rate of electron transfer from QA to QB at the acceptor side of PSII, thus a high quantity of P680+ and/or effective quenching by exogenous molecules. The increase in the I-P part of the induction curve typically attributed to the reduction of electron transporters (ferredoxin, intermediary acceptors, and NADP) of the PSI acceptor side was observed in both SgC and SgLZ but not in CeLZ populations. These changes demonstrate species-specific effects on electron transport during the light phase of photosynthesis under complex environmental stress. Our results show that Sg and Ce individuals developed a range of structural and functional adaptations to protect PSA against complex environmental stresses (possible combination of heavy metals, water deficiency, temperature, nutrient deficiency and salinity). Both species from LZ plots could tolerate high levels of Cd, Zn and Pb in leaf tissues. Therefore they can be potential candidates for use in phytoremediation of HM contaminated areas. However, further long-term field and experimental research on plant traits response and adaptation to complex environmental stresses on industrial habitats are needed.

Ectopic Expression of a Transmembrane Protein KaCyt b6 from a Red Seaweed Kappaphycus alvarezii in Transgenic Tobacco Augmented the Photosynthesis and Growth

Cytochrome b6f complex is a thylakoid membrane-localized protein and catalyses the transfer of electrons from plastoquinol to plastocyanin in photosynthetic electron transport chain. In the present study, Cytochrome b6 (KaCyt b6) gene from Kappaphycus alvarezii (a red seaweed) was overexpressed in tobacco. A 935 base pair (bp) long KaCyt b6 cDNA contained an open reading frame of 648 bp encoding a protein of 215 amino acids with an expected isoelectric point of 8.67 and a molecular mass of 24.37 kDa. The KaCyt b6 gene was overexpressed in tobacco under control of CaMV35S promoter. The transgenic tobacco had higher electron transfer rate and photosynthetic yield over wild-type and vector control tobacco. The KaCyt b6 tobacco also exhibited significantly higher photosynthetic gas exchange (PN) and improved water use efficiency. The transgenic plants had higher ratio of PN and intercellular CO2. The KaCyt b6 transgenic tobacco showed higher estimates of photosystem II quantum yield, higher activity of the water-splitting complex, PSII photochemistry, and photochemical quenching. The basal quantum yield of nonphotochemical processes in PSII was recorded lower in KaCyt b6 tobacco. Transgenic tobacco contained higher contents of carotenoids and total chlorophyll and also had better ratios of chlorophyll a and b, and carotenoids and total chlorophyll contents hence improved photosynthetic efficiency and production of sugar and starch. The KaCyt b6 transgenic plants performed superior under control and greenhouse conditions. To the best of our knowledge through literature survey, this is the first report on characterization of KaCyt b6 gene from K. alvarezii for enhanced photosynthetic efficiency and growth in tobacco.

Identification of key chlorophyll fluorescence parameters as biomarkers for dryland wheat under future climate conditions

Nowadays, climate change is the primary factor shaping the future of food and nutritional security. To investigate the interactive effects of various climate variables on photosynthetic efficiency, an experiment was conducted using 10 dryland wheat genotypes. These genotypes were exposed to different conditions: temperatures of 25 ± 3 °C and 34 ± 3 °C, carbon dioxide concentrations of 380 ± 50 ppm and 800 ± 50 ppm, and irrigation regimes of 50% field capacity and well-watered. Our results indicated that the wheat genotypes responded differently to both individual and combined climate stress factors. The traditional winter wheat genotype *Sardari*, along with the newly developed dryland wheat genotype *Ivan*, exhibited resilience to anticipated climate conditions. This resilience was reflected in enhancements in photochemical quantum efficiency parameters (Y(II), qP, and qL) under combined stress conditions. Resilient genotypes demonstrated superior regulation of the stomatal conductance (GS) and electron transport rate (ETR) under elevated temperature and CO2 levels. Principal component analysis (PCA) revealed significant correlations between chlorophyll fluorescence parameters and climate factors, such as NPQ with temperature, Y(NO) with CO2, qL in response to drought stress, and both qP and Y(II) with the interactions among temperature, CO2, and drought stress. Elevated CO2 reduced the ETR and GS across all genotypes. Our findings underscore the importance of assessing not only fundamental chlorophyll fluorescence parameters like Fm and Fo but also the efficiency of NPQ and Y(II) to understand climate change impacts on dryland wheat genotypes. We suggest that these parameters could serve as valuable biomarkers for breeding programs aimed at improving plant adaptation to future dryland climate conditions.

Induction and Characteristics of Callus Cultures of the Medicinal Plant Tussilago farfara L

Tussilago farfara L. is a traditional medicinal plant valued for its potentially health-promoting metabolites. Its herbal raw material has been recognized and used since ancient times and continues to be widely used in traditional medicine. Introducing this plant species to in vitro cultivation is a challenging task, but once the protocol is developed, such cultures can provide an abundant and inexhaustible source of plant material. In this study, we report the successful induction and growth of vigorous T. farfara callus in vitro. Callus induction was achieved on MS solid media with the combination of indole-3-acetic acid (3 mg/L) and benzyl aminopurine (2 mg/L) in darkness, whereas it appeared inefficient under light conditions and in suspension culture. We present a detailed description of callus growth kinetics, morphological analysis, photosynthetic activity, and biochemical parameters (including protein content and photosynthetic pigments) supported by histological studies. Furthermore, we observed the potential for organogenesis and somatic embryogenesis. This method for the in vitro propagation of T. farfara, along with callus culture maintenance, offers a wide range of applications in pharmacy for the production of valuable metabolites. Moreover, it could benefit the environment by reducing the depletion of natural populations of this species and may serve as an alternative strategy for species conservation in light of global warming.

Brassinosteroid improves light stress tolerance in tomato (Lycopersicon esculentum) by regulating redox status, photosynthesis and photosystem II

Plants often experience variations in light intensity, referred to as light stress, that negatively impact important aspects of plant growth and development, including photosynthesis and antioxidant system. The photosynthetic machinery is susceptible to these disturbances, especially photosystem II and its reaction centers. We aimed to evaluate the role of brassinosteriod in plants under both high and low light conditions by examining various physiological parameters such as photosynthetic efficiency, pigment levels, and enzymatic activity of various antioxidant enzymes in one month old tomato plants. We investigated various chlorophyll fluorescence parameters under low light (LL) and high light (HL) conditions and the associated gene expression related to photosynthesis, including plastocyanin, ferredoxin, and photosystem II oxygen-evolving enhancer protein 3 (PsbQ). Our results indicate that exogenous brassinosteroid application considerably increased tolerance to both high and low light stress in 4-week-old tomato as treated plants displayed enhanced photosynthesis, reduced oxidative damage, and increased antioxidant enzyme activity in comparison to control plants. Furthermore, brassinosteroid treatment enhanced the expression of genes associated with antioxidant pathways, which significantly contributed to the recovery of chlorophyll fluorescence parameters crucial for plant growth and development. Our results provide valuable insights into how brassinosteroid reduces light-induced stress in tomato plants.

Drought and heat stress interactions: Unveiling the molecular and physiological responses of Persian walnut

While numerous studies explored the response of walnut plants to drought stress (DS), there remains a significant gap in the knowledge regarding the impact of heat stress (HS) and the combined effects of DS and HS on the recovery capacity of walnut trees. This study aimed to investigate the mechanism of Persian walnut (cv. Chandler) response to the combined DS and HS, focusing on various aspects including photosynthesis, water relations, and osmotic regulation. The treatments involved subjecting plants to DS (through a withholding method for 24 d), HS (gradually up to 40 °C for 8 d), and a combined DS and HS, which were compared to a control group (no stress) during the stress and recovery phases. The results showed that DS had significantly more negative effects on chlorophyll content, relative water content (RWC), leaf water potential (WP), osmotic potential (OP) compared to HS. Involvement of osmoregulation mechanism was detected more in DS and HS plants through the accumulation of proline, glycine Betaine and total soluble carbohydrates. The functionality of photosynthesis was significantly impacted by both HS and DS, respectively. While the HS accelerated the change of the abovementioned physiological processes in drought-stressed seedlings. Consistently, more pronounced damage was found in leaves under the combined stress, alongside the decrease RWC, chlorophyll content and fluorescence ratios. Based on the analysis of the linear mixed-effect model, the effects of combined stress and HS on photosynthesis parameters were detected in the early stages of stress compared to DS. Within a range of stresses, the abovementioned physiological processes of individual and combined-stressed plants recovered to levels comparable to those of the control. Our results also showed a substantial reduction in the expression of the photosynthetic genes (Fd, Cyt b6f, and PsbB) in Persian walnut saplings under abiotic stress conditions indicating significant damage to their photosynthetic apparatus. This study highlights that, under scenarios of aggravating drought occurring with heat, walnut seedlings could face a high risk of damage to physiological structures in relation to the synergistically increased hydraulic and thermal impairments.

Heat stress tolerance in wheat seedling: Clustering genotypes and identifying key traits using multivariate analysis

Elevated atmospheric heat is considered as one of the bottlenecks for global wheat production. Screening potential wheat genotypes against heat stress and selecting some suitable indicators to assist in understanding thermotolerance could be crucial for sustaining wheat cultivation. Accordingly, 80 diverse bread wheat genotypes were evaluated in controlled lab condition by imposing a week-long heat stress (35/25 °C D/N) at the seedling stage. The response of heat stress was evaluated using multivariate analysis techniques on 20 morpho-physiological traits. Results showed significant variations in the studied traits due to the imposition of heat stress. Eleven seedling traits that contributed significantly to the genotypic variability were identified using principal component analysis (PCA). A substantial correlation between most of the selected seedling attributes was observed. Hierarchical cluster analysis identified three distinct clusters among the tested wheat genotypes. Cluster 1, consisting of 33 genotypes, exhibited the highest tolerance to heat stress, followed by Cluster 2 (18 genotypes) with moderate tolerance and Cluster 3 (29 genotypes) showing susceptibility. Linear discriminant analysis (LDA) approved that nearly 93 % of the wheat genotypes were appropriately ascribed to each cluster. The squared distance analysis confirmed the distinct nature of the clusters. Using multi-trait genotype-ideotype distance index (MGIDI), all 12 identified tolerant genotypes (BG-30, BD-468, BG-24, BD-9908, BG-32, BD-476, BD-594, BD-553, BD-488, BG-33, BD-495, and AS-10627) originated from Cluster 1. Selection gain in MGIDI analysis, broad-sense heritability, and multiple linear regression analysis together identified shoot and root dry and fresh weights, chlorophyll contents (a and total), shoot tissue water content, root-shoot dry weight ratio, and efficiency of photosystem II (PS II) as the most vital discriminatory factors explaining heat stress tolerance of 80 wheat genotypes. The identified genotypes with superior thermotolerance would offer resourceful genetic tools for breeders to improve wheat yield in warmer regions. The traits found to have greater contribution in explaining heat stress tolerance will be equally important in prioritizing future research endeavors.

Chlorophyll Fluorescence in Wheat Breeding for Heat and Drought Tolerance

The constantly growing need to increase the production of agricultural products in changing climatic conditions makes it necessary to accelerate the development of new cultivars that meet the modern demands of agronomists. Currently, the breeding process includes the stages of genotyping and phenotyping to optimize the selection of promising genotypes. One of the most popular phenotypic methods is the pulse-amplitude modulated (PAM) fluorometry, due to its non-invasiveness and high information content. In this review, we focused on the opportunities of using chlorophyll fluorescence (ChlF) parameters recorded using PAM fluorometry to assess the state of plants in drought and heat stress conditions and predict the economically significant traits of wheat, as one of the most important agricultural crops, and also analyzed the relationship between the ChlF parameters and genetic markers.

A local or a stranger? Comparison of autochthonous vs. allochthonous microalgae potential for bioremediation of coal mine drainage water

Coal mining endangers the environment by contaminating of soil, surface, and ground water with coal mine drainage water (CMW) polluted by heavy metals. Microalgal cultures, hyper-accumulators of heavy metals, represent a promising solution for CMW biotreatment. A bottleneck of this approach is the availability of microalgal strains that combine a large capacity for heavy metal biocapture with a high resilience to their toxic effects. Biotopes contaminated with heavy metals are frequently inhabited by microalgae evolved to be resilient to heavy metal toxicity. Therefore, the autochthonous (locally isolated) microalgal strains are a priori considered to be superior for biotreatment of heavy metal-polluted waste streams. Still, strains from biocollections combine a high pollutant resilience with other biotechnologically important traits such as high productivity, high CO2 sequestration rate etc. Moreover, the strains available "off-the-shelf" would enable rapid development of bioprocesses. Here, we compared the efficiency of CMW biotreatment with autochthonous (isolated from the coal mine drainage sump) and allochthonous microalgae (from a geographically distant phosphate-polluted site). Both autochthonous strains and allochthonous strains turned to be interchangeable under our experimental conditions. Still, the autochthonous strains showed a higher capacity for sequestration of iron, zinc, and manganese, the specific pollutants of the studied CMW. It can be important when the duration of unattended exploitation of the CMW treatment facility is a priority or spikes of the heavy metal concentration in CMW are expected. Therefore, the "off-the-shelf" strains can be a plausible solution for rapid development of CMW treatment technologies from scratch (although screening for acute toxicity of CMW is imperative). On the other hand, locally isolated strains can offer distinct advantages and should be always considered if sufficient time and other resources are available for the development of microalgae-based process for CMW treatment.

Silicon Modifies Photosynthesis Efficiency and hsp Gene Expression in European Beech (Fagus sylvatica) Seedlings Exposed to Drought Stress

Background: Climate change is leading to severe and long-term droughts in European forest ecosystems. can have profound effects on various physiological processes, including photosynthesis, gene expression patterns, and nutrient uptake at the developmental stage of young trees. Objectives: Our study aimed to test the hypothesis that the application of silica (SiO2) influences photosynthetic efficiency and gene expression in 1- to 2-year-old Fagus sylvatica (L.) seedlings. Additionally, we aimed to assess whether silicon application positively influences the structural properties of leaves and roots. To determine whether the plant physiological responses are genotype-specific, seedlings of four geographically different provenances were subjected to a one-year evaluation under greenhouse conditions. Methods: We used the Kruskal-Wallis test followed by Wilcoxon's test to evaluate the differences in silicon content and ANOVA followed by Tukey's test to evaluate the physiological responses of seedlings depending on treatment and provenance. Results: Our results showed a significantly higher Si content in the roots compared with the leaves, regardless of provenance and treatment. The most significant differences in photosynthetic performance were found in trees exposed to Si treatment, but the physiological responses were generally nuanced and provenance-dependent. Expression of hsp70 and hsp90 was also increased in leaf tissues of all provenances. These results provide practical insights that Si can improve the overall health and resilience of beech seedlings in nursery and forest ecosystems, with possible differences in the beneficial role of silicon application arising from the large differences in wild populations of forest tree species.

Rapid Reduction of Phytotoxicity in Green Waste for Use as Peat Substitute: Optimization of Ammonium Incubation Process

The rapid growth of the horticultural industry has increased demand for soilless cultivation substrates. Peat, valued for its physical and chemical properties, is widely used in soilless cultivation. However, peat is non-renewable, and over-extraction poses serious ecological risks. Therefore, sustainable alternatives are urgently needed. Ammonium incubation, a novel method to reduce phytotoxicity, offers the potential for green waste, a significant organic solid waste resource, to substitute peat. This study optimized the ammonium incubation process to reduce green waste phytotoxicity. It systematically examined different nitrogen salts (type and amount) and environmental conditions (temperature, aeration, duration) affecting detoxification efficiency. Results show a significant reduction in phytotoxicity with ammonium bicarbonate, carbonate, and sulfate, especially carbonate, at 1.5%. Optimal conditions were 30 °C for 5 days with regular aeration. Under these conditions, ammonium salt-treated green waste significantly reduced total phenolic content and stabilized germination index (GI) at a non-phytotoxic level (127%). Using treated green waste as a partial peat substitute in lettuce cultivation showed promising results. This low-cost, low-energy method effectively converts green waste into sustainable peat alternatives, promoting eco-friendly horticulture and environmental conservation.

Relationship between photosynthetic performance and yield loss in winter oilseed rape (Brassica napus L.) under frost conditions

Winter oilseed rape (Brassica napus L.), the principal oilseed crop in Europe, is notably vulnerable to spring frosts that can drastically reduce yields in ways that are challenging to predict with standard techniques. Our research focused on evaluating the efficacy of photosynthetic efficiency analysis in this crop and identifying specific chlorophyll fluorescence parameters severely impacted by frost, which could serve as noninvasive biomarkers for yield decline. The experiments were carried out in semi-controlled conditions with several treatments: a control, one day at -3°C, three days at -3°C, one day at -6°C, and three days at -6°C. We employed continuous-excitation and pulse-amplitude-modulation chlorophyll fluorescence measurements to assess plant sensitivity to frost. Also, plant gas exchange and chlorophyll content index measurements were performed. Certain parameters strongly correlated with final yield losses, thereby establishing a basis for developing new agricultural protocols to predict and mitigate frost damage in rapeseed crops accurately.

Photosynthetic Performance and Yield Losses of Winter Rapeseed (Brassica napus L. var. napus) Caused by Simulated Hail

Winter oilseed rape (Brassica napus L.), Europe's foremost oilseed crop, is significantly impacted by hailstorms, leading to substantial yield reductions that are difficult to predict and measure using conventional methods. This research aimed to assess the effectiveness of photosynthetic efficiency analysis for predicting yield loss in winter rapeseed subjected to hail exposure. The aim was to pinpoint the chlorophyll fluorescence parameters most affected by hail stress and identify those that could act as non-invasive biomarkers of yield loss. The study was conducted in partially controlled conditions (greenhouse). Stress was induced in the plants by firing plastic balls with a 6 mm diameter at them using a pneumatic device, which launched the projectiles at speeds of several tens of meters per second. Measurements of both continuous-excitation and pulse-modulated-amplitude chlorophyll fluorescence were engaged to highlight the sensitivity of the induction curve and related parameters to hail stress. Our research uncovered that some parameters such as Fs, Fm', ΦPSII, ETR, Fo, Fv/Fm, and Fv/Fo measured eight days after the application of stress had a strong correlation with final yield, thus laying the groundwork for the creation of new practical protocols in agriculture and the insurance industry to accurately forecast damage to rapeseed crops due to hail stress.

Plant responses to co-occurring heat and water deficit stress: A comparative study of tolerance mechanisms in old and modern wheat genotypes

Global climate change increases the likelihood of co-occurrence of hot and dry spells with increased intensity, frequency, and duration. Studying the impact of the two stresses provide a better understanding of tolerance mechanisms in wheat, and our study was focused on revealing plant stress responses to different severities of combined stress at two phenophases in old and modern wheat genotypes. During the stem elongation and anthesis stages, plants were exposed to four treatments: control, deficit irrigation, combined heat, and deficit irrigation at 31 °C (HD31) and 37 °C (HD37). The modern genotypes were less affected by deficit irrigation at stem elongation as they maintained higher photosynthesis, stomatal conductance, and leaf cooling than old genotypes. When the HD37 stress was imposed during anthesis, the modern genotypes exhibited superior performance compared to the old, which was due to their higher photosynthetic rates resulting from improved biochemical regulation and a higher chlorophyll content. The plant responses varied during two phenophases under the combined stress exposure. Genotypes subjected to HD37 stress during stem elongation, photosynthesis was mainly controlled by stomatal regulation, whereas at anthesis it was predominated by biochemical regulation. These findings contribute to a deeper comprehension of plant tolerance mechanisms in response to different intensities of co-occurring hot and dry weather conditions.

Modulation of physio-biochemical and photosynthesis parameters by overexpressing SbPIP2 gene improved abiotic stress tolerance of transgenic tobacco

The present study aims to explore the potential of a plasma-membrane localized PIP2-type aquaporin protein sourced from the halophyte Salicornia brachiata to alleviate salinity and water deficit stress tolerance in a model plant through transgenic intervention. Transgenic plants overexpressing SbPIP2 gene showed improved physio-biochemical parameters like increased osmolytes (proline, total sugar, and amino acids), antioxidants (polyphenols), pigments and membrane stability under salinity and drought stresses compared to control plants [wild type (WT) and vector control (VC) plants]. Multivariate statistical analysis showed that, under water and salinity stresses, osmolytes, antioxidants and pigments were correlated with SbPIP2-overexpressing (SbPIP2-OE) plants treated with salinity and water deficit stress, suggesting their involvement in stress tolerance. As aquaporins are also involved in CO2 transport, SbPIP2-OE plants showed enhanced photosynthesis performance than wild type upon salinity and drought stresses. Photosynthetic gas exchange (net CO2 assimilation rate, PSII efficiency, ETR, and non-photochemical quenching) were significantly higher in SbPIP2-OE plants compared to control plants (wild type and vector control plants) under both unstressed and stressed conditions. The higher quantum yield for reduction of end electron acceptors at the PSI acceptor side [Φ( R0 )] in SbPIP2-OE plants compared to control plants under abiotic stresses indicates a continued PSI functioning, leading to retained electron transport rate, higher carbon assimilation, and less ROS-mediated injuries. In conclusion, the SbPIP2 gene functionally validated in the present study could be a potential candidate for engineering abiotic stress resilience in important crops.

Ecotoxicological assessment of cigarette butts on morphology and photosynthetic potential of Azolla pinnata

Cigarette butts (CBs) have become the most ubiquitous form of anthropogenic litter globally. CBs contain various hazardous chemicals that persist in the environment for longer period. These substances are susceptible to leaching into the environment through waterways. The recent study was aimed to evaluate the effects of disposed CBs on the growth and development of Azolla pinnata, an aquatic plant. It was found that after a span of 6 days, the root length, surface area, number of fronds, and photosynthetic efficacy of plant were considerably diminished on the exposure of CBs (concentrations 0 to 40). The exposure of CBs led to a decrease in the FM, FV/F0, and φP0, in contrast, the φD0 increased in response to CBs concentration. Moreover, ABS/CSm, TR0/CSm, and ET0/CSm displayed a negative correlation with CB-induced chemical stress. The performance indices were also decreased (p-value ≤ 0.05) at the highest concentration of CBs. LD50 and LD90 represent the lethal dose, obtained value for LD50 is 20.30 CBs and LD90 is 35.26 CBs through probit analysis. Our results demonstrate that the CBs cause irreversible damage of photosynthetic machinery in plants and also reflect the efficacy of chlorophyll a fluorescence analysis and JIP test for assessing the toxicity of CBs in plants.

The application of laser‑induced fluorescence in oil spill detection

Over the past two decades, oil spills have been one of the most serious ecological disasters, causing massive damage to the aquatic and terrestrial ecosystems as well as the socio-economy. In view of this situation, several methods have been developed and utilized to analyze oil samples. Among these methods, laser-induced fluorescence (LIF) technology has been widely used in oil spill detection due to its classification method, which is based on the fluorescence characteristics of chemical material in oil. This review systematically summarized the LIF technology from the perspective of excitation wavelength selection and the application of traditional and novel machine learning algorithms to fluorescence spectrum processing, both of which are critical for qualitative and quantitative analysis of oil spills. It can be seen that an appropriate excitation wavelength is indispensable for spectral discrimination due to different kinds of polycyclic aromatic hydrocarbons' (PAHs) compounds in petroleum products. By summarizing some articles related to LIF technology, we discuss the influence of the excitation wavelength on the accuracy of the oil spill detection model and proposed several suggestions on the selection of excitation wavelength. In addition, we introduced some traditional and novel machine learning (ML) algorithms and discussed the strengths and weaknesses of these algorithms and their applicable scenarios. With an appropriate excitation wavelength and data processing algorithm, it is believed that laser-induced fluorescence technology will become an efficient technique for real-time detection and analysis of oil spills.

Quorum sensing regulation in Microcystis aeruginosa: Insights into AHL-mediated physiological processes and MC-LR production

Quorum sensing (QS) is a widespread regulatory mechanism in Gram-negative bacteria, primarily involving the secretion of N-acyl homoserine lactone (AHL) to facilitate population density sensing. However, the existence of QS in blue-green algae, a subset of photoautotrophic Gram-negative bacteria forming high-density communities in water blooms, remains elusive. This study delves into the unexplored realm of QS in Microcystis aeruginosa (M. aeruginosa) by investigating AHL-related regulatory mechanisms and their impact on various physiological processes. Utilizing high-performance liquid chromatography coupled with mass spectrometry (HPLC-MS) and biosensors, a hitherto unknown long-chain AHL exhibiting a mass-to-charge ratio of 318 was identified in sterile M. aeruginosa cultures. Our investigation focused on discerning correlations between AHL activity fluctuations and key parameters such as microcystin (MC-LR) production, algal density, photosynthesis, buoyancy, and aggregation. Furthermore, the AHL extract was introduced during the logarithmic stage of M. aeruginosa cultures to observe the response in physiological processes. The results revealed that AHL, functioning as an autoinducer (AI), positively influenced algal growth and photosynthesis, as evidenced by the upregulated photosynthetic conversion efficiency of PSI and chlorophyll synthesis gene (psbA). AI also played a crucial role in altering surface characteristics through the synthesis of polysaccharides and proteins in EPS, subsequently promoting cell aggregation. Concomitantly, AI upregulated mcyD, enhancing the synthesis of MC-LR. Notably, our investigation pinpointed the initiation of QS in Microcystis at a density of approximately 1.22 × 10^7 cells/mL. This groundbreaking evidence underscores the regulatory role of AI in governing the physiological processes of growth, aggregation, buoyancy, and MC-LR production by activating pertinent gene expressions. This study significantly expands the understanding of QS in AHL, providing crucial insights into the regulatory networks operating in blue-green algae.

Hormesis, the Individual and Combined Phytotoxicity of the Components of Glyphosate-Based Formulations on Algal Growth and Photosynthetic Activity

The occurrence of the market-leading glyphosate active ingredient in surface waters is a globally observed phenomenon. Although co-formulants in pesticide formulations were considered inactive components from the aspects of the required main biological effect of the pesticide, several studies have proven the high individual toxicity of formulating agents, as well as the enhanced combined toxicity of the active ingredients and other components. Since the majority of active ingredients are present in the form of chemical mixtures in our environment, the possible combined toxicity between active ingredients and co-formulants is particularly important. To assess the individual and combined phytotoxicity of the components, glyphosate was tested in the form of pure active ingredient (glyphosate isopropylammonium salt) and herbicide formulations (Roundup Classic and Medallon Premium) formulated with a mixture of polyethoxylated tallow amines (POEA) or alkyl polyglucosides (APG), respectively. The order of acute toxicity was as follows for Roundup Classic: glyphosate < herbicide formulation < POEA. However, the following order was demonstrated for Medallon Premium: herbicide formulation < glyphosate < APG. Increased photosynthetic activity was detected after the exposure to the formulation (1.5-5.8 mg glyphosate/L and 0.5-2.2 mg POEA/L) and its components individually (glyphosate: 13-27.2 mg/L, POEA: 0.6-4.8 mg/L), which indicates hormetic effects. However, decreased photosynthetic activity was detected at higher concentrations of POEA (19.2 mg/L) and Roundup Classic (11.6-50.6 mg glyphosate/L). Differences were demonstrated in the sensitivity of the selected algae species and, in addition to the individual and combined toxicity of the components presented in the glyphosate-based herbicides. Both of the observed inhibitory and stimulating effects can adversely affect the aquatic ecosystems and water quality of surface waters.

Feeling the Strain: Quantifying Ligand Deformation in Photosynthesis

Structural distortion of protein-bound ligands can play a critical role in enzyme function by tuning the electronic and chemical properties of the ligand molecule. However, quantifying these effects is difficult due to the limited resolution of protein structures and the difficulty of generating accurate structural restraints for nonprotein ligands. Here, we seek to quantify these effects through a statistical analysis of ligand distortion in chlorophyll proteins (CP), where ring deformation is thought to play a role in energy and electron transfer. To assess the accuracy of ring-deformation estimates from available structural data, we take advantage of the C2 symmetry of photosystem II (PSII), comparing ring-deformation estimates for equivalent sites both within and between 113 distinct X-ray and cryogenic electron microscopy PSII structures. Significantly, we find that several deformation modes exhibit considerable variability in predictions, even for equivalent monomers, down to a 2 Å resolution, to an extent that probably prevents their utilization in optical calculations. We further find that refinement restraints play a critical role in determining deformation values to resolution as low as 2 Å. However, for those modes that are well-resolved in the structural data, ring deformation in PSII is strongly conserved across all species tested from cyanobacteria to algae. These results highlight both the opportunities and limitations inherent in structure-based analyses of the bioenergetic and optical properties of CPs and other protein-ligand complexes.

A glutathione-independent DJ-1/Pfp1 domain containing glyoxalase III, OsDJ-1C, functions in abiotic stress adaptation in rice

MAIN CONCLUSION

Overexpression of OsDJ-1C in rice improves root architecture, photosynthesis, yield and abiotic stress tolerance through modulating methylglyoxal levels, antioxidant defense, and redox homeostasis. Exposure to abiotic stresses leads to elevated methylglyoxal (MG) levels in plants, impacting seed germination and root growth. In response, the activation of NADPH-dependent aldo-keto reductase and glutathione (GSH)-dependent glyoxalase enzymes helps to regulate MG levels and reduce its toxic effects. However, detoxification may not be carried out effectively due to the limitation of GSH and NADPH in plants under stress. Recently, a novel enzyme called glyoxalase III (GLY III) has been discovered which can detoxify MG in a single step without needing GSH. To understand the physiological importance of this pathway in rice, we overexpressed the gene encoding GLYIII enzyme (OsDJ-1C) in rice. It was observed that OsDJ-1C overexpression in rice regulated MG levels under stress conditions thus, linked well with plants' abiotic stress tolerance potential. The OsDJ-1C overexpression lines displayed better root architecture, improved photosynthesis, and reduced yield penalty compared to the WT plants under salinity, and drought stress conditions. These plants demonstrated an improved GSH/GSSG ratio, reduced level of reactive oxygen species, increased antioxidant capacity, and higher anti-glycation activity thereby indicating that the GLYIII mediated MG detoxification plays a significant role in plants' ability to reduce the impact of abiotic stress. Furthermore, these findings imply the potential of OsDJ-1C in crop improvement programs.

Metabolomics combined with physiology and transcriptomics reveal how Nicotiana tabacum leaves respond to cold stress

Low temperature-induced cold stress is a major threat to plant growth, development and distribution. Unraveling the responses of temperature-sensitive crops to cold stress and the mechanisms of cold acclimation are critical for food demand. In this study, combined physiological, transcriptomic, and metabolomic analyses were conducted on Nicotiana tabacum suffering short-term 4 °C cold stress. Our results showed that cold stress destroyed cellular membrane stability, decreased the chlorophyll (Chl) and carotenoid contents, and closed stomata, resulting in lipid peroxidation and photosynthesis restriction. Chl fluorescence measurements revealed that primary photochemistry, photoelectrochemical quenching and photosynthetic electron transport in Nicotiana tabacum leaves were seriously suppressed upon exposer to cold stress. Enzymatic and nonenzymatic antioxidants, including superoxide dismutase, catalase, peroxidase, reduced glutathione, proline, and soluble sugar, were all profoundly increased to trigger the cold acclimation defense against oxidative damage. A total of 178 metabolites and 16,204 genes were differentially expressed in cold-stressed Nicotiana tabacum leaves. MEturquoise and MEblue modules identified by WGCNA were highly correlated with physiological indices, and the corresponding hub genes were significantly enriched in pathways related to photosynthesis - antenna proteins and flavonoid biosynthesis. Untargeted metabolomic analysis identified specific metabolites, including sucrose, phenylalanine, glutamine, glutamate, and proline, that enhance plant cold acclimation. Combined transcriptomics and metabolomic analysis highlight the vital roles of carbohydrate and amino acid metabolism in enhancing the cold tolerance of Nicotiana tabacum. Our comprehensive investigation provides novel insights for efforts to alleviate low temperature-induced oxidative damage to Nicotiana tabacum plants and proposes a breeding target for cold stress-tolerant cultivars.

Using chlorophyll fluorescence parameters and antioxidant enzyme activity to assess drought tolerance of spring wheat

The improvement of phenotyping methods is necessary for large-scale screening studies of wheat (Triticum aestivum L.) drought tolerance. The objective of our research was to find out whether it is possible to use chlorophyll (Chl) fluorescence parameters instead of biochemical indicators of drought tolerance when screening wheat. We measured shoot biomass, gas exchange, as well as biochemical and Chl fluorescence indicators in 11 wheat genotypes grown under contrasting water supplies and differing in drought tolerance. The effect of drought on the traits was evaluated using the effect of size index. We made two independent rankings: one based on biochemical indicators and the other on Chl fluorescence parameters. The positions of the three genotypes with the highest comprehensive drought tolerance index in the two independent rankings coincided completely. It is concluded that Chl fluorescence methods are suitable for identifying soft wheat genotypes that differ significantly in their ability to activate cellular defense mechanisms.

Three-state mathematical model for the assessment of DCMU-treated photosystem II heterogeneity

Photosystem II (PSII) is one of the main pigment-protein complexes of photosynthesis which is highly sensitive to unfavorable environmental factors. The heterogeneity of PSII properties is essential for the resistance of autotrophic organisms to stress factors. Assessment of the PSII heterogeneity may be used in environmental monitoring for on-line detection of contamination of the environment. We propose an approach to assess PSII oxygen-evolving complex and light-harvesting antenna heterogeneity that is based on mathematical modeling of the shape of chlorophyll a fluorescence rise of 3-(3,4-dichlorophenyl)-1,1-dimethylurea-treated samples. The hierarchy of characteristic times of the processes considered in the model makes it possible to reduce the model to a system of three ordinary differential equations. The analytic solution of the reduced three-state model is expressed as a sum of two exponential functions, and it exactly reproduces the solution of the complete system within the time range from microseconds to hundreds of milliseconds. The combination of several such models for reaction centers with different properties made it possible to use it as an instrument to study PSII heterogeneity. PSII heterogeneity was studied for Chlamydomonas at different intensities of actinic light, for Scenedesmus under short-term heating, and for Chlorella grown in nitrate-enriched and nitrate-depleted media.

ChloroSpec: A new in vivo chlorophyll fluorescence spectrometer for simultaneous wavelength- and time-resolved detection

Chlorophyll fluorescence is a ubiquitous tool in basic and applied plant science research. Various standard commercial instruments are available for characterization of photosynthetic material like leaves or microalgae, most of which integrate the overall fluorescence signals above a certain cut-off wavelength. However, wavelength-resolved (fluorescence signals appearing at different wavelengths having different time dependent decay) signals contain vast information required to decompose complex signals and processes into their underlying components that can untangle the photo-physiological process of photosynthesis. Hence, to address this we describe an advanced chlorophyll fluorescence spectrometer - ChloroSpec - allowing three-dimensional simultaneous detection of fluorescence intensities at different wavelengths in a time-resolved manner. We demonstrate for a variety of typical examples that most of the generally used fluorescence parameters are strongly wavelength dependent. This indicates a pronounced heterogeneity and a highly dynamic nature of the thylakoid and the photosynthetic apparatus under actinic illumination. Furthermore, we provide examples of advanced global analysis procedures integrating this three-dimensional signal and relevant information extracted from them that relate to the physiological properties of the organism. This conveniently obtained broad range of data can make ChloroSpec a new standard tool in photosynthesis research.

The Fitting of the OJ Phase of Chlorophyll Fluorescence Induction Based on an Analytical Solution and Its Application in Urban Heat Island Research

Chlorophyll (Chl) fluorescence induction (FI) upon a dark-light transition has been widely analyzed to derive information on initial events of energy conversion and electron transfer in photosystem II (PSII). However, currently, there is no analytical solution to the differential equation of QA reduction kinetics, raising a doubt about the fitting of FI by numerical iteration solution. We derived an analytical solution to fit the OJ phase of FI, thereby yielding estimates of three parameters: the functional absorption cross-section of PSII (σPSII), a probability parameter that describes the connectivity among PSII complexes (p), and the rate coefficient for QA- oxidation (kox). We found that σPSII, p, and kox exhibited dynamic changes during the transition from O to J. We postulated that in high excitation light, some other energy dissipation pathways may vastly outcompete against excitation energy transfer from a closed PSII trap to an open PSII, thereby giving the impression that connectivity seemingly does not exist. We also conducted a case study on the urban heat island effect on the heat stability of PSII using our method and showed that higher-temperature-acclimated leaves had a greater σPSII, lower kox, and a tendency of lower p towards more shade-type characteristics.

Prediction of biomass accumulation and tolerance of wheat seedlings to drought and elevated temperatures using hyperspectral imaging

Early prediction of important agricultural traits in wheat opens up broad prospects for the development of approaches to accelerate the selection of genotypes for further breeding trials. This study is devoted to the search for predictors of biomass accumulation and tolerance of wheat to abiotic stressors. Hyperspectral (HS) and chlorophyll fluorescence (ChlF) parameters were analyzed as predictors under laboratory conditions. The predictive ability of reflectance and normalized difference indices (NDIs), as well as their relationship with parameters of photosynthetic activity, which is a key process influencing organic matter production and crop yields, were analyzed. HS parameters calculated using the wavelengths in Red (R) band and the spectral range next to the red edge (FR-NIR) were found to be correlated with biomass accumulation. The same ranges showed potential for predicting wheat tolerance to elevated temperatures. The relationship of HS predictors with biomass accumulation and heat tolerance were of opposite sign. A number of ChlF parameters also showed statistically significant correlation with biomass accumulation and heat tolerance. A correlation between HS and ChlF parameters, that demonstrated potential for predicting biomass accumulation and tolerance, has been shown. No predictors of drought tolerance were found among the HS and ChlF parameters analyzed.

A plant's perception of growth-promoting bacteria and their metabolites

Many recent studies have highlighted the importance of plant growth-promoting (rhizo)bacteria (PGPR) in supporting plant's development, particularly under biotic and abiotic stress. Most focus on the plant growth-promoting traits of selected strains and the latter's effect on plant biomass, root architecture, leaf area, and specific metabolite accumulation. Regarding energy balance, plant growth is the outcome of an input (photosynthesis) and several outputs (i.e., respiration, exudation, shedding, and herbivory), frequently neglected in classical studies on PGPR-plant interaction. Here, we discuss the primary evidence underlying the modifications triggered by PGPR and their metabolites on the plant ecophysiology. We propose to detect PGPR-induced variations in the photosynthetic activity using leaf gas exchange and recommend setting up the correct timing for monitoring plant responses according to the specific objectives of the experiment. This research identifies the challenges and tries to provide future directions to scientists working on PGPR-plant interactions to exploit the potential of microorganisms' application in improving plant value.

Measurement of the Kinetics of Chlorophyll a Fluorescence by an LED-Light Source Fluorimeter, Handy PEA

The chlorophyll a fluorescence measurement method is used to determine the efficiency of the photosynthetic apparatus and to assess the physiological state of photosynthetic organisms. The measurement is simple, fast, and noninvasive. It is a precise tool to study photosynthesis response under stress conditions or to assess the impact of specific environmental factors on plants. Here we describe the usage of this method in environmental-controlled plant production systems differing in temperature or light source on the growth and development of common buckwheat.

Genotoxic and morpho-physiological responses of ZnO macro- and nano-forms in plants

In the current study, two plants, viz., Pisum sativum L. and Hordeum vulgare L., were exposed to nano- and macro-dispersed ZnO at 1, 10, and 30 times of maximal permissible concentration (MPC). The main objective of the study is to depict and compare the genotoxicity in terms of chromosomal anomalies, cytotoxicity (i.e., mitotic index), and phytotoxicity (viz., germination, morphometry, maximal quantum yield, and chlorophyll fluorescence imaging) of macro- and nano-forms of ZnO along with their accumulation and translocation. In the case of genotoxic and cytotoxic responses, the maximal effect was observed at 30 MPC, regardless of the macro- or nano-forms of ZnO. The phytotoxic observations revealed that the treatment with macro- and nano-forms of ZnO significantly affected the germination rate, germination energy, and length of roots and shoots of H. vulgare in a dose-dependent manner. The factor toxicity index of treated soil demonstrated that toxicity soared as concentrations increased and that at 30 MPC, toxicity was average and high in macro- and nano-dispersed ZnO, respectively. Furthermore, the photosynthetic parameters were observed to be negatively affected in both treatments, but the maximal effect was observed in the case of nano-dispersed form. It was noted that the mobility of nano-dispersed ZnO in the soil was higher than macro-dispersed. The increased mobility of nano-dispersed ZnO might have boosted their accumulation and translocation that subsequently led to the oxidative stress due to the accelerated production of reactive oxygen species, thus strengthen toxicity implications in plants.

Integrating Chlorophyll a Fluorescence and Enzymatic Profiling to Reveal the Wheat Responses to Nano-ZnO Stress

It has been shown that increased concentrations of zinc oxide nanoparticles (nano-ZnO) in the soil are harmful to plant growth. However, the sensitivity of different wheat cultivars to nano-ZnO stress is still unclear. To detect the physiological response process of wheat varieties with different tolerance to nano-ZnO stress, four wheat cultivars (viz., cv. TS1, ZM18, JM22, and LM6) with different responses to nano-ZnO stress were selected, depending on previous nano-ZnO stress trials with 120 wheat cultivars in China. The results found that nano-ZnO exposure reduced chlorophyll concentrations and photosynthetic electron transport efficiency, along with the depressed carbohydrate metabolism enzyme activities, and limited plant growth. Meanwhile, the genotypic variation in photosynthetic carbon assimilation under nano-ZnO stress was found in wheat plants. Wheat cv. JM22 and LM6 possessed relatively lower Zn concentrations and higher leaf nitrogen per area, less reductions in their net photosynthetic rate, a maximum quantum yield of the PS II (Fv/Fm), electron transport flux per cross-section (ETo/CSm), trapped energy flux per cross-section (TRo/CSm), and total soluble sugar and sucrose concentrations under nano-ZnO stress, showing a better tolerance to nano-ZnO stress than wheat cv. TS1 and ZM18. In addition, the chlorophyll a fluorescence parameters Fv/Fm, ETo/CSm, and TRo/CSm could be used to rapidly screen wheat varieties resistant to nano-ZnO stress. The results here provide a new approach for solving the issues of crop yield decline in regions polluted by heavy metal nanoparticles and promoting the sustainable utilization of farmland with heavy metal pollution.

Etioplasts are more susceptible to salinity stress than chloroplasts and photosynthetically active etio-chloroplasts of wheat (Triticum aestivum L.)

High soil salinity is a global problem in agriculture that directly affects seed germination and the development of the seedlings sown deep in the soil. To study how salinity affected plastid ultrastructure, leaf segments of 11-day-old light- and dark-grown (etiolated) wheat (Triticum aestivum L. cv. Mv Béres) seedlings were floated on Hoagland solution, 600 mM KCl:NaCl (1:1) salt or isosmotic polyethylene glycol solution for 4 h in the dark. Light-grown seedlings were also treated in the light. The same treatments were also performed on etio-chloroplasts of etiolated seedlings greened for different time periods. Salt stress induced slight to strong changes in the relative chlorophyll content, photosynthetic activity, and organization of thylakoid complexes. Measurements of malondialdehyde contents and high-temperature thermoluminescence indicated significantly increased oxidative stress and lipid peroxidation under salt treatment, except for light-grown leaves treated in the dark. In chloroplasts of leaf segments treated in the light, slight shrinkage of grana (determined by transmission electron microscopy and small-angle neutron scattering) was observed, while a swelling of the (pro)thylakoid lumen was observed in etioplasts. Salt-induced swelling disappeared after the onset of photosynthesis after 4 h of greening. Osmotic stress caused no significant alterations in plastid structure and only mild changes in their activities, indicating that the swelling of the (pro)thylakoid lumen and the physiological effects of salinity are rather associated with the ionic component of salt stress. Our data indicate that etioplasts of dark-germinated wheat seedlings are the most sensitive to salt stress, especially at the early stages of their greening.

Genotype-dependent Strategies to "Overcome" Excessive Light: Insights into Non-Photochemical Quenching under High Light Intensity

High light (HL) intensities have a significant impact on energy flux and distribution within photosynthetic apparatus. To understand the effect of high light intensity (HL) on the HL tolerance mechanisms in tomatoes, we examined the response of the photosynthesis apparatus of 12 tomato genotypes to HL. A reduced electron transfer per reaction center (ET0 /RC), an increased energy dissipation (DI0 /RC) and non-photochemical quenching (NPQ), along with a reduced maximum quantum yield of photosystem II (FV /FM ), and performance index per absorbed photon (PIABS ) were common HL-induced responses among genotypes; however, the magnitude of those responses was highly genotype-dependent. Tolerant and sensitive genotypes were distinguished based on chlorophyll fluorescence and energy-quenching responses to HL. Tolerant genotypes alleviated excess light through energy-dependent quenching (qE ), resulting in smaller photoinhibitory quenching (qI ) compared to sensitive genotypes. Quantum yield components also shifted under HL, favoring the quantum yield of NPQ (ՓNPQ ) and the quantum yield of basal energy loss (ՓN0 ), while reducing the efficient quantum yield of PSII (ՓPSII ). The impact of HL on tolerant genotypes was less pronounced. While the energy partitioning ratio did not differ significantly between sensitive and tolerant genotypes, the ratio of NPQ components, especially qI , affected plant resilience against HL. These findings provide insights into different patterns of HL-induced NPQ components in tolerant and sensitive genotypes, aiding the development of resilient crops for heterogeneous light conditions.

Analysis of Microcystis aeruginosa physiology by spectral flow cytometry: Impact of chemical and light exposure

M. aeruginosa fluorescent changes were observed using a Cytek Aurora spectral flow cytometer that contains 5 lasers and 64 narrow band detectors located between 365 and 829 nm. Cyanobacteria were treated with different concentrations of H2O2 and then monitored after exposure between 1 and 8 days. The red fluorescence emission derived from the excitation of cyanobacteria with a yellow green laser (550 nm) was measured in the 652-669 nm detector while green fluorescence from excitation with a violet laser (405 nm) was measured in the 532-550 nm detector. The changes in these parameters were measured after the addition of H2O2. There was an initial increase in red fluorescence intensity at 24 hours. This was followed by a daily decrease in red fluorescence intensity. In contrast, green fluorescence increased at 24 hours and remained higher than the control for the duration of the 8-day study. A similar fluorescence intensity effect as H2O2 on M. aeruginosa fluorescence emissions was observed after exposure to acetylacetone, diuron (DCMU), peracetic acid, and tryptoline. Minimal growth was also observed in H2O2 treated cyanobacteria during exposure of H2O2 for 24 days. In another experiment, H2O2-treated cyanobacteria were exposed to high-intensity blue (14 mW) and UV (1 mW) lights to assess the effects of light stress on fluorescence emissions. The combination of blue and UV light with H2O2 had a synergistic effect on M. aeruginosa that induced greater fluorescent differences between control and treated samples than exposure to either stimulus individually. These experiments suggest that the early increase in red and green fluorescence may be due to an inhibition in the ability of photosynthesis to process photons. Further research into the mechanisms driving these increases in fluorescence is necessary.

Ionic, not the osmotic component, is responsible for the salinity-induced inhibition of greening in etiolated wheat (Triticum aestivum L. cv. Mv Béres) leaves: a comparative study

MAIN CONCLUSION

Greening was partially (in 300 mM NaCl, CaCl2, 600 mM KNO3 or KCl) or fully inhibited (in 600 mM NaCl, NaNO3 or NaCl:KCl) by the ionic and not the osmotic component of salinity. Although high soil salinity is an increasing global problem, not much is known about how direct exposure to salinity affects etiolated leaves of seedlings germinating in the soil and then reaching the surface. We investigated the effect of various salt treatments on the greening process of leaves in 8- to 11-day-old etiolated wheat (Triticum aestivum L. Mv. Béres) seedlings. Etiolated leaf segments pre-treated on different salt (600 mM NaCl:KCl 1:1, 600 mM NaCl, 600 mM KCl, 600 mM NaNO3, 600 mM KNO3, 300 mM KCl, 300 mM NaCl or 300 mM CaCl2) or isosmotic polyethylene glycol 6000 (PEG) solutions for 1.5 h in the dark and then greened for 16 h on the same solutions were studied. Leaf segments greened on PEG (osmotic stress) or on 300 mM KCl had similar chloroplasts compared to control samples greened on Hoagland solution. Slightly slower development of chloroplast structure and function (photosynthetic activity) was observed in segments greened on 300 mM NaCl or CaCl2, 600 mM KNO3 or KCl. However, etioplast-to-chloroplast transformation and chlorophyll accumulation were fully inhibited and peculiar prothylakoid swelling occurred in segments greened on 600 mM NaCl, NaNO3 or NaCl:KCl (1:1) solutions. The data indicate that not the high osmolarity of the used salt solution, but its ions, especially Na+, had the strongest negative impact on these processes.

Timely estimation of leaf chlorophyll fluorescence parameters under varying light regimes by coupling light drivers to leaf traits

Unveiling informative chlorophyll a fluorescence (ChlF) parameters and leaf morphological/biochemical traits under varying light conditions is important in ecological studies but has less been investigated. In this study, the trait-ChlF relationship and regressive estimation of ChlF parameters from leaf traits under varying light conditions were investigated using a dataset of synchronous measurements of ChlF parameters and leaf morphological/biochemical traits in Mangifera indica L. The results showed that the relationships between ChlF parameters and leaf traits varied across light intensities, as indicated by different slopes and intercepts, highlighting the limitations of using leaf traits alone to capture the dynamics of ChlF parameters. Light drivers, on the other hand, showed a better predictive ability for light-dependent ChlF parameters compared to leaf traits, with light intensity having a large effect on light-dependent ChlF parameters. Furthermore, the responses of ФF and NPQ to light drivers differed between leaf types, with light intensity having an effect on ФF in shaded leaves, whereas it had a primary effect on NPQ in sunlit leaves. These results facilitate and deepen our understanding of how the light environment affects leaf structure and function and, therefore, provide the theoretical basis for understanding plant ecological strategies in response to the light environment.

Derivative-based time-adjusted analysis of diurnal and within-tree variation in the OJIP fluorescence transient of silver birch

The JIP test, based on fast chlorophyll fluorescence (ChlF) kinetics and derived parameters, is a dependable tool for studying photosynthetic efficiency under varying environmental conditions. We extracted additional information from the whole OJIP and the normalized variable fluorescence (Vt) transient curve using first and second-order derivatives to visualize and localize points of landmark events. To account for light-induced variations in the fluorescence transient, we present a time-adjusted JIP test approach in which the derivatives of the transient curve are used to determine the exact timing of the J and I steps instead of fixed time points. We compared the traditional JIP test method with the time-adjusted method in analyzing fast ChlF measurements of silver birch (Betula pendula) in field conditions studying diurnal and within-crown variation. The time-adjusted JIP test method showed potential for studying ChlF dynamics, as it takes into account potential time shifts in the occurrence of J and I steps. The exact occurrence times of J and I steps and other landmark events coincided with the times of significant differences in fluorescence intensity. Chlorophyll fluorescence parameters were linearly related to photosynthetic photon flux density (PPFD) at different times of day, and the values obtained by the time-adjusted JIP test showed a stronger linear regression than the traditional JIP test. For fluorescence parameters having significant differences among different times of day and crown layers, the time-adjusted JIP test resulted in more clear differences than the traditional JIP test. Diurnal ChlF intensity data indicated that differences between the southern and northern provenance were only evident under low light conditions. Taken together, our results emphasize the potential relevance of considering the time domain in the analysis of the fast ChlF induction.

Artificial neural network (ANN)-based algorithms for high light stress phenotyping of tomato genotypes using chlorophyll fluorescence features

High light (HL) is a common environmental stress directly imposes photoinhibition on the photosynthesis apparatus. Breeding plants for tolerance against HL is therefore highly demanded. Chlorophyll fluorescence (ChlF) is a sensitive indicator of stress in plants and can be evaluated using OJIP transients. In this study, we compared the ChlF features of plants exposed to HL (1200 μmol m-2 s-1) with that of control plants (300 μmol m-2 s-1). To extract the most reliable ChlF features for discrimination between HL-stressed and non-stressed plants, we applied three artificial neural network (ANN)-based algorithms, namely, Boruta, Support Vector Machine (SVM), and Recursive Feature Elimination (RFE). Feature selection algorithms identified multiple features but only two features, namely the maximal quantum yield of PSII photochemistry (FV/FM) and quantum yield of energy dissipation (ɸD0), remained consistent across all genotypes in control conditions, while exhibited variation in HL. Therefore, considered reliable features for HL stress screening. The selected features were then used for screening 14 tomato genotypes for HL. Genotypes were categorized into three groups, tolerant, semi-tolerant, and sensitive genotypes. Foliar hydrogen peroxide (H2O2) and malondialdehyde (MDA) contents were measured as independent proxies for benchmarking selected features. Tolerant genotypes were attributed with the lowest change in H2O2 and MDA contents, while the sensitive genotypes displayed the highest magnitude of increase in H2O2 and MDA by HL treatment compared to the control. Finally, a FV/FM higher than 0.77 and ɸD0 lower than 0.24 indicates a healthy electron transfer chain (ETC) when tomato plants are exposed to HL.

Impact of mercury on photosynthetic performance of Lemna minor: a chlorophyll fluorescence analysis

The purpose of this study was to evaluate the effectiveness of chlorophyll fluorescence analysis in detecting the effects of mercury (Hg) treatment in duckweed species Lemna minor. The results showed that Hg treatment (ranging from 0.0 to 0.4 µM) significantly impacted the plant's photosynthetic ability, with a decrease in variable chlorophyll fluorescence, energy fluxes, density of reaction centers, and performance index. Complete inhibition of electron transport was observed in plants treated with high Hg concentrations, and the quantum yield of primary photochemistry and the ratio of dissipated energy to absorption both decreased with increasing Hg concentrations. Performance Index (PI) was significantly affected by the Hg concentrations, reaching zero in plants treated with the highest Hg concentration. Overall, JIP analysis was found to be an effective tool for detecting deleterious effects of Hg in plants.

Hormetic Effect of Glyphosate on the Morphology, Physiology and Metabolism of Coffee Plants

Glyphosate is a nonselective herbicide of systemic action that inhibits the enzyme 5-enolpyruvylshikimate-3-phosphate synthase, thus compromising amino acid production and consequently the growth and development of susceptible plants. The objective of this study was to evaluate the hormetic effect of glyphosate on the morphology, physiology, and biochemistry of coffee plants. Coffee seedlings (Coffea arabica cv Catuaí Vermelho IAC-144) were transplanted into pots filled with a mixture of soil and substrate and subjected to ten doses of glyphosate: 0, 11.25, 22.5, 45, 90, 180, 360, 720, 1440, and 2880 g acid equivalent (ae) ha^-1. Evaluations were performed using the morphological, physiological, and biochemical variables. Data analysis for the confirmation of hormesis occurred with the application of mathematical models. The hormetic effect of glyphosate on coffee plant morphology was determined by the variables plant height, number of leaves, leaf area, and leaf, stem, and total dry mass. Doses from 14.5 to 30 g ae ha^-1 caused the highest stimulation. In the physiological analyses, the highest stimulation was observed upon CO₂ assimilation, transpiration, stomatal conductance, carboxylation efficiency, intrinsic water use efficiency, electron transport rate, and photochemical efficiency of photosystem II at doses ranging from 4.4 to 55 g ae ha^-1. The biochemical analyses revealed significant increases in the concentrations of quinic acid, salicylic acid, caffeic acid, and coumaric acid, with maximum stimulation at doses between 3 and 140 g ae ha^-1. Thus, the application of low doses of glyphosate has positive effects on the morphology, physiology, and biochemistry of coffee plants.

PCA-based detection of phosphorous deficiency in wheat plants using prompt fluorescence and 820 nm modulated reflection signals

Phosphorus deficiency induces biochemical and morphological changes which affect crop yield and production. Prompt fluorescence signal characterizes the PSII activity and electron transport from PSII to PSI, while the modulated light reflection at 820 (MR 820) nm investigates the redox state of photosystem I (PSI) and plastocyanin (PC). Therefore, combining information from modulated reflection at 820 nm with chlorophyll a fluorescence can potentially provide a more complete understanding of the photosynthetic process and integrating other plant physiological measurements may help to increase the accuracy of detecting the phosphorus deficiency in wheat leaves. In our study, we combined the chlorophyll a fluorescence and MR 820 signals to study the response of wheat plants to phosphorus deficiency as indirect tools for phosphorus plant status characterization. In addition, we studied the changes in chlorophyll content index, stomatal conductance (gs), root morphology, and biomass of wheat plants. The results showed an alteration in the electron transport chain as a specific response to P deficiency in the I-P phase during the reduction of the acceptor side of PSI. Furthermore, P deficiency increased parameters related to the energy fluxes per reaction centers, namely ETo/RC, REo/RC, ABS/RC, and DIo/RC. P deficiency increased the values of MRmin and MRmax and decreased νred, which implies that the reduction of PSI and PC became slower as the phosphorus decreased. The principal component analysis of the modulated reflection and chlorophyll a fluorescence parameters, with the integration of the growth parameters as supplementary variables, accounted for over 71% of the total variance in our phosphorus data using two components and provided a reliable information on PSII and PSI photochemistry under P deficiency.