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For: del Pozo JC, Ramirez-Parra E. Whole genome duplications in plants: an overview from Arabidopsis. J Exp Bot 2015;66:6991-7003. [PMID: 26417017 DOI: 10.1093/jxb/erv432] [Citation(s) in RCA: 96] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Number Cited by Other Article(s)
1
Montes C, Zhang J, Nolan TM, Walley JW. Single-cell proteomics differentiates Arabidopsis root cell types. THE NEW PHYTOLOGIST 2024. [PMID: 38923440 DOI: 10.1111/nph.19923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Accepted: 06/09/2024] [Indexed: 06/28/2024]
2
Laosuntisuk K, Vennapusa A, Somayanda IM, Leman AR, Jagadish SK, Doherty CJ. A normalization method that controls for total RNA abundance affects the identification of differentially expressed genes, revealing bias toward morning-expressed responses. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024;118:1241-1257. [PMID: 38289828 DOI: 10.1111/tpj.16654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 01/12/2024] [Accepted: 01/18/2024] [Indexed: 02/01/2024]
3
Wan JN, Wang SW, Leitch AR, Leitch IJ, Jian JB, Wu ZY, Xin HP, Rakotoarinivo M, Onjalalaina GE, Gituru RW, Dai C, Mwachala G, Bai MZ, Zhao CX, Wang HQ, Du SL, Wei N, Hu GW, Chen SC, Chen XY, Wan T, Wang QF. The rise of baobab trees in Madagascar. Nature 2024;629:1091-1099. [PMID: 38750363 PMCID: PMC11136661 DOI: 10.1038/s41586-024-07447-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2023] [Accepted: 04/19/2024] [Indexed: 05/30/2024]
4
Hou Q, Yu R, Shang C, Deng H, Wen Z, Qiu Z, Qiao G. Molecular characterization and evolutionary relationships of DOFs in four cherry species and functional analysis in sweet cherry. Int J Biol Macromol 2024;263:130346. [PMID: 38403208 DOI: 10.1016/j.ijbiomac.2024.130346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 02/17/2024] [Accepted: 02/19/2024] [Indexed: 02/27/2024]
5
López-Jurado J, Picazo-Aragonés J, Alonso C, Balao F, Mateos-Naranjo E. Physiology, gene expression, and epiphenotype of two Dianthus broteri polyploid cytotypes under temperature stress. JOURNAL OF EXPERIMENTAL BOTANY 2024;75:1601-1614. [PMID: 37988617 PMCID: PMC10901207 DOI: 10.1093/jxb/erad462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 11/21/2023] [Indexed: 11/23/2023]
6
Berthelier TH, Cabanac SC, Callot C, Bellec A, Mathé C, Jamet E, Dunand C. Evolutionary Analysis of Six Gene Families Part of the Reactive Oxygen Species (ROS) Gene Network in Three Brassicaceae Species. Int J Mol Sci 2024;25:1938. [PMID: 38339216 PMCID: PMC10856686 DOI: 10.3390/ijms25031938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 01/30/2024] [Accepted: 02/01/2024] [Indexed: 02/12/2024]  Open
7
Zhang H, Zhang H, Wang Y, Wang M, Guo H, Chan Y, Cong R, Zhao S, Xie J. High-quality maple genome reveals duplication-facilitated leaf color diversity. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2024;338:111917. [PMID: 37944703 DOI: 10.1016/j.plantsci.2023.111917] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 10/05/2023] [Accepted: 11/04/2023] [Indexed: 11/12/2023]
8
Zhang Z, Huo W, Wang X, Ren Z, Zhao J, Liu Y, He K, Zhang F, Li W, Jin S, Yang D. Origin, evolution, and diversification of the wall-associated kinase gene family in plants. PLANT CELL REPORTS 2023;42:1891-1906. [PMID: 37743376 DOI: 10.1007/s00299-023-03068-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Accepted: 09/08/2023] [Indexed: 09/26/2023]
9
Huang Y, Zhao X, Zheng Q, He X, Zhang MM, Ke S, Li Y, Zhang C, Ahmad S, Lan S, Liu ZJ. Genome-Wide Identification of TCP Gene Family in Dendrobium and Their Expression Patterns in Dendrobium chrysotoxum. Int J Mol Sci 2023;24:14320. [PMID: 37762622 PMCID: PMC10531990 DOI: 10.3390/ijms241814320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 09/15/2023] [Accepted: 09/18/2023] [Indexed: 09/29/2023]  Open
10
Jin Y, Luo J, Yang Y, Jia J, Sun M, Wang X, Khan I, Huang D, Huang L. The evolution and expansion of RWP-RK gene family improve the heat adaptability of elephant grass (Pennisetum purpureum Schum.). BMC Genomics 2023;24:510. [PMID: 37653366 PMCID: PMC10472707 DOI: 10.1186/s12864-023-09550-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2023] [Accepted: 08/02/2023] [Indexed: 09/02/2023]  Open
11
Farhat S, Modica MV, Puillandre N. Whole Genome Duplication and Gene Evolution in the Hyperdiverse Venomous Gastropods. Mol Biol Evol 2023;40:msad171. [PMID: 37494290 PMCID: PMC10401626 DOI: 10.1093/molbev/msad171] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 06/20/2023] [Accepted: 07/17/2023] [Indexed: 07/28/2023]  Open
12
Yuan J, Song Q. Polyploidy and diploidization in soybean. MOLECULAR BREEDING : NEW STRATEGIES IN PLANT IMPROVEMENT 2023;43:51. [PMID: 37313224 PMCID: PMC10244302 DOI: 10.1007/s11032-023-01396-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2023] [Accepted: 05/22/2023] [Indexed: 06/15/2023]
13
Du Q, Wu Z, Liu P, Qing J, He F, Du L, Sun Z, Zhu L, Zheng H, Sun Z, Yang L, Wang L, Du H. The chromosome-level genome of Eucommia ulmoides provides insights into sex differentiation and α-linolenic acid biosynthesis. FRONTIERS IN PLANT SCIENCE 2023;14:1118363. [PMID: 37063180 PMCID: PMC10102601 DOI: 10.3389/fpls.2023.1118363] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 03/20/2023] [Indexed: 06/19/2023]
14
Pacheco DDR, Santana BCG, Pirovani CP, de Almeida AAF. Zinc/iron-regulated transporter-like protein gene family in Theobroma cacao L: Characteristics, evolution, function and 3D structure analysis. FRONTIERS IN PLANT SCIENCE 2023;14:1098401. [PMID: 36925749 PMCID: PMC10012423 DOI: 10.3389/fpls.2023.1098401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 02/06/2023] [Indexed: 06/18/2023]
15
Castro H, Dias MC, Castro M, Loureiro J, Castro S. Impact of genome duplications in drought tolerance and distribution of the diploid-tetraploid Jasione maritima. FRONTIERS IN PLANT SCIENCE 2023;14:1144678. [PMID: 36909429 PMCID: PMC9995889 DOI: 10.3389/fpls.2023.1144678] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/14/2023] [Accepted: 02/10/2023] [Indexed: 06/18/2023]
16
Wei Y, Chong Z, Lu C, Li K, Liang C, Meng Z, Wang Y, Guo S, He L, Zhang R. Genome-wide identification and expression analysis of the cotton patatin-related phospholipase A genes and response to stress tolerance. PLANTA 2023;257:49. [PMID: 36752875 DOI: 10.1007/s00425-023-04081-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Accepted: 01/19/2023] [Indexed: 06/18/2023]
17
Mattingly KZ, Hovick SM. Autopolyploids of Arabidopsis thaliana are more phenotypically plastic than their diploid progenitors. ANNALS OF BOTANY 2023;131:45-58. [PMID: 34175922 PMCID: PMC9904351 DOI: 10.1093/aob/mcab081] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Accepted: 06/25/2021] [Indexed: 05/25/2023]
18
Liu C, Wang YG. Does one subgenome become dominant in the formation and evolution of a polyploid? ANNALS OF BOTANY 2023;131:11-16. [PMID: 35291007 PMCID: PMC9904339 DOI: 10.1093/aob/mcac024] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Accepted: 03/15/2022] [Indexed: 06/02/2023]
19
Cavé-Radet A, Salmon A, Tran Van Canh L, Moyle RL, Pretorius LS, Lima O, Ainouche ML, El Amrani A. Recent allopolyploidy alters Spartina microRNA expression in response to xenobiotic-induced stress. PLANT MOLECULAR BIOLOGY 2023;111:309-328. [PMID: 36581792 DOI: 10.1007/s11103-022-01328-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Accepted: 11/30/2022] [Indexed: 06/17/2023]
20
Koo H, Lee YS, Nguyen VB, Giang VNL, Koo HJ, Park HS, Mohanan P, Song YH, Ryu B, Kang KB, Sung SH, Yang TJ. Comparative transcriptome and metabolome analyses of four Panax species explore the dynamics of metabolite biosynthesis. J Ginseng Res 2023;47:44-53. [PMID: 36644396 PMCID: PMC9834023 DOI: 10.1016/j.jgr.2022.07.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 01/31/2022] [Accepted: 07/11/2022] [Indexed: 01/18/2023]  Open
21
Khan A, Ali S, Khan M, Hamayun M, Moon YS. Parthenium hysterophorus's Endophytes: The Second Layer of Defense against Biotic and Abiotic Stresses. Microorganisms 2022;10:2217. [PMID: 36363809 PMCID: PMC9696505 DOI: 10.3390/microorganisms10112217] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 11/07/2022] [Accepted: 11/08/2022] [Indexed: 09/10/2023]  Open
22
Alves S, Braga Â, Parreira D, Alhinho AT, Silva H, Ramos MJN, Costa MMR, Morais‐Cecílio L. Genome-wide identification, phylogeny, and gene duplication of the epigenetic regulators in Fagaceae. PHYSIOLOGIA PLANTARUM 2022;174:e13788. [PMID: 36169620 PMCID: PMC9828519 DOI: 10.1111/ppl.13788] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Revised: 09/16/2022] [Accepted: 09/21/2022] [Indexed: 05/04/2023]
23
Pacey EK, Maherali H, Husband BC. Polyploidy increases storage but decreases structural stability in Arabidopsis thaliana. Curr Biol 2022;32:4057-4063.e3. [PMID: 35944542 DOI: 10.1016/j.cub.2022.07.019] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Revised: 05/05/2022] [Accepted: 07/08/2022] [Indexed: 11/26/2022]
24
Yu Z, Tian C, Guan Y, He J, Wang Z, Wang L, Lin S, Guan Z, Fang W, Chen S, Zhang F, Jiang J, Chen F, Wang H. Expression Analysis of TCP Transcription Factor Family in Autopolyploids of Chrysanthemum nankingense. FRONTIERS IN PLANT SCIENCE 2022;13:860956. [PMID: 35720599 PMCID: PMC9201386 DOI: 10.3389/fpls.2022.860956] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Accepted: 05/06/2022] [Indexed: 06/15/2023]
25
de Pedro M, Mayol M, González-Martínez SC, Regalado I, Riba M. Environmental patterns of adaptation after range expansion in Leontodon longirostris: The effect of phenological events on fitness-related traits. AMERICAN JOURNAL OF BOTANY 2022;109:602-615. [PMID: 35067917 DOI: 10.1002/ajb2.1815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 12/27/2021] [Accepted: 12/27/2021] [Indexed: 06/14/2023]
26
Borowska-Zuchowska N, Senderowicz M, Trunova D, Kolano B. Tracing the Evolution of the Angiosperm Genome from the Cytogenetic Point of View. PLANTS (BASEL, SWITZERLAND) 2022;11:plants11060784. [PMID: 35336666 PMCID: PMC8953110 DOI: 10.3390/plants11060784] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2022] [Revised: 03/14/2022] [Accepted: 03/14/2022] [Indexed: 05/05/2023]
27
Cheng J, Zhang G, Xu L, Liu C, Jiang H. Altered H3K27 trimethylation contributes to flowering time variations in polyploid Arabidopsis thaliana ecotypes. JOURNAL OF EXPERIMENTAL BOTANY 2022;73:1402-1414. [PMID: 34698830 DOI: 10.1093/jxb/erab470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Accepted: 10/22/2021] [Indexed: 06/13/2023]
28
Williams AM, Carter OG, Forsythe ES, Mendoza HK, Sloan DB. Gene duplication and rate variation in the evolution of plastid ACCase and Clp genes in angiosperms. Mol Phylogenet Evol 2022;168:107395. [PMID: 35033670 PMCID: PMC9673162 DOI: 10.1016/j.ympev.2022.107395] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 11/16/2021] [Accepted: 12/13/2021] [Indexed: 11/19/2022]
29
Fu H, Zhao J, Ren Z, Yang K, Wang C, Zhang X, Elesawi IE, Zhang X, Xia J, Chen C, Lu P, Chen Y, Liu H, Yu G, Liu B. Interfered chromosome pairing at high temperature promotes meiotic instability in autotetraploid Arabidopsis. PLANT PHYSIOLOGY 2022;188:1210-1228. [PMID: 34927688 PMCID: PMC8825311 DOI: 10.1093/plphys/kiab563] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Accepted: 11/04/2021] [Indexed: 05/03/2023]
30
Tossi VE, Martínez Tosar LJ, Laino LE, Iannicelli J, Regalado JJ, Escandón AS, Baroli I, Causin HF, Pitta-Álvarez SI. Impact of polyploidy on plant tolerance to abiotic and biotic stresses. FRONTIERS IN PLANT SCIENCE 2022;13:869423. [PMID: 36072313 PMCID: PMC9441891 DOI: 10.3389/fpls.2022.869423] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Accepted: 07/25/2022] [Indexed: 05/04/2023]
31
Rempfer C, Wiedemann G, Schween G, Kerres KL, Lucht JM, Horres R, Decker EL, Reski R. Autopolyploidization affects transcript patterns and gene targeting frequencies in Physcomitrella. PLANT CELL REPORTS 2022;41:153-173. [PMID: 34636965 PMCID: PMC8803787 DOI: 10.1007/s00299-021-02794-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 09/23/2021] [Indexed: 06/13/2023]
32
Three topological features of regulatory networks control life-essential and specialized subsystems. Sci Rep 2021;11:24209. [PMID: 34930908 PMCID: PMC8688434 DOI: 10.1038/s41598-021-03625-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Accepted: 12/07/2021] [Indexed: 11/08/2022]  Open
33
Genome evolution of the psammophyte Pugionium for desert adaptation and further speciation. Proc Natl Acad Sci U S A 2021;118:2025711118. [PMID: 34649989 PMCID: PMC8545485 DOI: 10.1073/pnas.2025711118] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/22/2021] [Indexed: 12/01/2022]  Open
34
Harms NE, Cronin JT, Gaskin JF. Increased ploidy of Butomus umbellatus in introduced populations is not associated with higher phenotypic plasticity to N and P. AOB PLANTS 2021;13:plab045. [PMID: 34394906 PMCID: PMC8356175 DOI: 10.1093/aobpla/plab045] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Accepted: 07/19/2021] [Indexed: 06/13/2023]
35
Seeing the Forest through the (Phylogenetic) Trees: Functional Characterisation of Grapevine Terpene Synthase (VviTPS) Paralogues and Orthologues. PLANTS 2021;10:plants10081520. [PMID: 34451565 PMCID: PMC8401418 DOI: 10.3390/plants10081520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 07/09/2021] [Accepted: 07/10/2021] [Indexed: 11/17/2022]
36
Gieroń Ż, Sitko K, Małkowski E. The Different Faces of Arabidopsis arenosa-A Plant Species for a Special Purpose. PLANTS (BASEL, SWITZERLAND) 2021;10:1342. [PMID: 34209450 PMCID: PMC8309363 DOI: 10.3390/plants10071342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 06/24/2021] [Accepted: 06/28/2021] [Indexed: 12/01/2022]
37
Wang C, Wang T, Yin M, Eller F, Liu L, Brix H, Guo W. Transcriptome Analysis of Tetraploid and Octoploid Common Reed (Phragmites australis). FRONTIERS IN PLANT SCIENCE 2021;12:653183. [PMID: 34025698 PMCID: PMC8132968 DOI: 10.3389/fpls.2021.653183] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 04/06/2021] [Indexed: 06/12/2023]
38
Garcia-Lozano M, Natarajan P, Levi A, Katam R, Lopez-Ortiz C, Nimmakayala P, Reddy UK. Altered chromatin conformation and transcriptional regulation in watermelon following genome doubling. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021;106:588-600. [PMID: 33788333 DOI: 10.1111/tpj.15256] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2020] [Accepted: 03/26/2021] [Indexed: 06/12/2023]
39
Heineike BM, El-Samad H. Paralogs in the PKA Regulon Traveled Different Evolutionary Routes to Divergent Expression in Budding Yeast. FRONTIERS IN FUNGAL BIOLOGY 2021;2:642336. [PMID: 37744115 PMCID: PMC10512328 DOI: 10.3389/ffunb.2021.642336] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Accepted: 03/24/2021] [Indexed: 09/26/2023]
40
Liu B, Jin C, De Storme N, Schotte S, Schindfessel C, De Meyer T, Geelen D. A Hypomorphic Mutant of PHD Domain Protein Male Meiocytes Death 1. Genes (Basel) 2021;12:516. [PMID: 33916197 PMCID: PMC8066392 DOI: 10.3390/genes12040516] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Revised: 03/24/2021] [Accepted: 03/26/2021] [Indexed: 01/04/2023]  Open
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Gómez-Martínez H, Gil-Muñoz F, Bermejo A, Zuriaga E, Badenes ML. Insights of Phenolic Pathway in Fruits: Transcriptional and Metabolic Profiling in Apricot (Prunus armeniaca). Int J Mol Sci 2021;22:ijms22073411. [PMID: 33810284 PMCID: PMC8037730 DOI: 10.3390/ijms22073411] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Revised: 03/17/2021] [Accepted: 03/24/2021] [Indexed: 11/16/2022]  Open
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Glazier DS. Genome Size Covaries More Positively with Propagule Size than Adult Size: New Insights into an Old Problem. BIOLOGY 2021;10:270. [PMID: 33810583 PMCID: PMC8067107 DOI: 10.3390/biology10040270] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Revised: 03/18/2021] [Accepted: 03/23/2021] [Indexed: 12/17/2022]
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Ye X, Hu H, Zhou H, Jiang Y, Gao S, Yuan Z, Stiller J, Li C, Chen G, Liu Y, Wei Y, Zheng YL, Wang YG, Liu C. Differences between diploid donors are the main contributing factor for subgenome asymmetry measured in either gene ratio or relative diversity in allopolyploids. Genome 2021;64:847-856. [PMID: 33661713 DOI: 10.1139/gen-2020-0024] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Hua Z. Diverse Evolution in 111 Plant Genomes Reveals Purifying and Dosage Balancing Selection Models for F-Box Genes. Int J Mol Sci 2021;22:E871. [PMID: 33467195 PMCID: PMC7829749 DOI: 10.3390/ijms22020871] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Revised: 01/13/2021] [Accepted: 01/13/2021] [Indexed: 12/14/2022]  Open
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Jin R, Zhang A, Sun J, Chen X, Liu M, Zhao P, Jiang W, Tang Z. Identification of Shaker K+ channel family members in sweetpotato and functional exploration of IbAKT1. Gene 2020;768:145311. [PMID: 33220344 DOI: 10.1016/j.gene.2020.145311] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Revised: 10/10/2020] [Accepted: 11/13/2020] [Indexed: 01/27/2023]
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Isolation of Lineage Specific Nuclei Based on Distinct Endoreduplication Levels and Tissue-Specific Markers to Study Chromatin Accessibility Landscapes. PLANTS 2020;9:plants9111478. [PMID: 33153046 PMCID: PMC7692515 DOI: 10.3390/plants9111478] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 10/31/2020] [Accepted: 11/01/2020] [Indexed: 12/31/2022]
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Scarrow M, Wang Y, Sun G. Molecular regulatory mechanisms underlying the adaptability of polyploid plants. Biol Rev Camb Philos Soc 2020;96:394-407. [PMID: 33098261 DOI: 10.1111/brv.12661] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 10/13/2020] [Accepted: 10/15/2020] [Indexed: 12/11/2022]
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Liu L, Qin L, Zhou Z, Hendriks WGHM, Liu S, Wei Y. Refining the Life Cycle of Plasmodiophora brassicae. PHYTOPATHOLOGY 2020;110:1704-1712. [PMID: 32407251 DOI: 10.1094/phyto-02-20-0029-r] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
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Naranjo‐Ortiz MA, Gabaldón T. Fungal evolution: cellular, genomic and metabolic complexity. Biol Rev Camb Philos Soc 2020;95:1198-1232. [PMID: 32301582 PMCID: PMC7539958 DOI: 10.1111/brv.12605] [Citation(s) in RCA: 53] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 03/31/2020] [Accepted: 04/02/2020] [Indexed: 12/13/2022]
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Inoue K, Takahagi K, Kouzai Y, Koda S, Shimizu M, Uehara-Yamaguchi Y, Nakayama R, Kita T, Onda Y, Nomura T, Matsui H, Nagaki K, Nishii R, Mochida K. Parental legacy and regulatory novelty in Brachypodium diurnal transcriptomes accompanying their polyploidy. NAR Genom Bioinform 2020;2:lqaa067. [PMID: 33575616 PMCID: PMC7671347 DOI: 10.1093/nargab/lqaa067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Revised: 08/15/2020] [Accepted: 08/31/2020] [Indexed: 11/22/2022]  Open
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