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Ahsan N, Kataya ARA, Rao RSP, Swatek KN, Wilson RS, Meyer LJ, Tovar-Mendez A, Stevenson S, Maszkowska J, Dobrowolska G, Yao Q, Xu D, Thelen JJ. Decoding Arabidopsis thaliana CPK/SnRK Superfamily Kinase Client Signaling Networks Using Peptide Library and Mass Spectrometry. PLANTS (BASEL, SWITZERLAND) 2024; 13:1481. [PMID: 38891291 PMCID: PMC11174488 DOI: 10.3390/plants13111481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 05/08/2024] [Accepted: 05/17/2024] [Indexed: 06/21/2024]
Abstract
Members of the calcium-dependent protein kinase (CDPK/CPK) and SNF-related protein kinase (SnRK) superfamilies are commonly found in plants and some protists. Our knowledge of client specificity of the members of this superfamily is fragmentary. As this family is represented by over 30 members in Arabidopsis thaliana, the identification of kinase-specific and overlapping client relationships is crucial to our understanding the nuances of this large family of kinases as directed towards signal transduction pathways. Herein, we used the kinase client (KiC) assay-a relative, quantitative, high-throughput mass spectrometry-based in vitro phosphorylation assay-to identify and characterize potential CPK/SnRK targets of Arabidopsis. Eight CPKs (1, 3, 6, 8, 17, 24, 28, and 32), four SnRKs (subclass 1 and 2), and PPCK1 and PPCK2 were screened against a synthetic peptide library that contains 2095 peptides and 2661 known phosphorylation sites. A total of 625 in vitro phosphorylation sites corresponding to 203 non-redundant proteins were identified. The most promiscuous kinase, CPK17, had 105 candidate target proteins, many of which had already been discovered. Sequence analysis of the identified phosphopeptides revealed four motifs: LxRxxS, RxxSxxR, RxxS, and LxxxxS, that were significantly enriched among CPK/SnRK clients. The results provide insight into both CPK- and SnRK-specific and overlapping signaling network architectures and recapitulate many known in vivo relationships validating this large-scale approach towards discovering kinase targets.
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Affiliation(s)
- Nagib Ahsan
- Division of Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
- Department of Chemistry and Biochemistry, Mass Spectrometry, Proteomics and Metabolomics Core Facility, Stephenson Life Sciences Research Center, The University of Oklahoma, Norman, OK 73019, USA
| | - Amr R. A. Kataya
- Division of Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - R. Shyama Prasad Rao
- Division of Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
- Center for Bioinformatics, NITTE Deemed to be University, Mangaluru 575018, India
| | - Kirby N. Swatek
- Division of Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
- Medical Research Council Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee DD1 5EH, UK
| | - Rashaun S. Wilson
- Division of Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
- Arvinas, Inc., New Haven, CT 06511, USA
| | - Louis J. Meyer
- Division of Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
- Bayer Crop Science, St. Louis, MO 63141, USA
| | - Alejandro Tovar-Mendez
- Division of Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
- Elemental Enzymes, St. Louis, MO 63132, USA
| | - Severin Stevenson
- Division of Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - Justyna Maszkowska
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, ul. Pawińskiego 5a, 02-106 Warsaw, Poland (G.D.)
| | - Grazyna Dobrowolska
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, ul. Pawińskiego 5a, 02-106 Warsaw, Poland (G.D.)
| | - Qiuming Yao
- Department of Electrical Engineering & Computer Science, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - Dong Xu
- Department of Electrical Engineering & Computer Science, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - Jay J. Thelen
- Division of Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
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Hussain M, Javed MM, Sami A, Shafiq M, Ali Q, Mazhar HSUD, Tabassum J, Javed MA, Haider MZ, Hussain M, Sabir IA, Ali D. Genome-wide analysis of plant specific YABBY transcription factor gene family in carrot (Dacus carota) and its comparison with Arabidopsis. BMC Genom Data 2024; 25:26. [PMID: 38443818 PMCID: PMC10916311 DOI: 10.1186/s12863-024-01210-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2023] [Accepted: 02/19/2024] [Indexed: 03/07/2024] Open
Abstract
YABBY gene family is a plant-specific transcription factor with DNA binding domain involved in various functions i.e. regulation of style, length of flowers, and polarity development of lateral organs in flowering plants. Computational methods were utilized to identify members of the YABBY gene family, with Carrot (Daucus carota) 's genome as a foundational reference. The structure of genes, location of the chromosomes, protein motifs and phylogenetic investigation, syntony and transcriptomic analysis, and miRNA targets were analyzed to unmask the hidden structural and functional characteristics YABBY gene family in Carrots. In the following research, it has been concluded that 11 specific YABBY genes irregularly dispersed on all 9 chromosomes and proteins assembled into five subgroups i.e. AtINO, AtCRC, AtYAB5, AtAFO, and AtYAB2, which were created on the well-known classification of Arabidopsis. The wide ranges of YABBY genes in carrots were dispersed due to segmental duplication, which was detected as prevalent when equated to tandem duplication. Transcriptomic analysis showed that one of the DcYABBY genes was highly expressed during anthocyanin pigmentation in carrot taproots. The cis-regulatory elements (CREs) analysis unveiled elements that particularly respond to light, cell cycle regulation, drought induce ability, ABA hormone, seed, and meristem expression. Furthermore, a relative study among Carrot and Arabidopsis genes of the YABBY family indicated 5 sub-families sharing common characteristics. The comprehensive evaluation of YABBY genes in the genome provides a direction for the cloning and understanding of their functional properties in carrots. Our investigations revealed genome-wide distribution and role of YABBY genes in the carrots with best-fit comparison to Arabidopsis thaliana.
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Affiliation(s)
- Mujahid Hussain
- Department of Horticulture, Faculty of Agriculture Sciences, University of the Punjab, Lahore P. O BOX, Lahore, 54590, Pakistan
| | - Muhammad Mubashar Javed
- Department of Plant Breeding & Genetics, Faculty of Agriculture Sciences, University of the Punjab, P.O BOX, Lahore, 54590, Pakistan
| | - Adnan Sami
- Department of Plant Breeding & Genetics, Faculty of Agriculture Sciences, University of the Punjab, P.O BOX, Lahore, 54590, Pakistan
| | - Muhammad Shafiq
- Department of Horticulture, Faculty of Agriculture Sciences, University of the Punjab, Lahore P. O BOX, Lahore, 54590, Pakistan
| | - Qurban Ali
- Department of Plant Breeding & Genetics, Faculty of Agriculture Sciences, University of the Punjab, P.O BOX, Lahore, 54590, Pakistan.
| | - Hafiz Sabah-Ud-Din Mazhar
- Department of Plant Breeding & Genetics, Faculty of Agriculture Sciences, University of the Punjab, P.O BOX, Lahore, 54590, Pakistan
| | - Javaria Tabassum
- Department of Plant Breeding & Genetics, Faculty of Agriculture Sciences, University of the Punjab, P.O BOX, Lahore, 54590, Pakistan
| | - Muhammad Arshad Javed
- Department of Plant Breeding & Genetics, Faculty of Agriculture Sciences, University of the Punjab, P.O BOX, Lahore, 54590, Pakistan
| | - Muhammad Zeeshan Haider
- Department of Plant Breeding & Genetics, Faculty of Agriculture Sciences, University of the Punjab, P.O BOX, Lahore, 54590, Pakistan
| | - Muhammad Hussain
- Department of Horticulture, Faculty of Agriculture Sciences, University of the Punjab, Lahore P. O BOX, Lahore, 54590, Pakistan
| | - Irfan Ali Sabir
- College of Horticulture, South China Agricultural University, Guangzhou, 510642, China
| | - Daoud Ali
- Department of Zoology, College of Science, King Saud University, PO Box 2455, Riyadh, 11451, Saudi Arabia
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Chandran AEJ, Finkler A, Hait TA, Kiere Y, David S, Pasmanik-Chor M, Shkolnik D. Calcium regulation of the Arabidopsis Na+/K+ transporter HKT1;1 improves seed germination under salt stress. PLANT PHYSIOLOGY 2024; 194:1834-1852. [PMID: 38057162 PMCID: PMC10904324 DOI: 10.1093/plphys/kiad651] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 11/02/2023] [Accepted: 11/09/2023] [Indexed: 12/08/2023]
Abstract
Calcium is known to improve seed-germination rates under salt stress. We investigated the involvement of calcium ions (Ca2+) in regulating HIGH-AFFINITY K+ TRANSPORTER 1 (HKT1; 1), which encodes a Na+/K+ transporter, and its post-translational regulator TYPE 2C PROTEIN PHOSPHATASE 49 (PP2C49), in germinating Arabidopsis (Arabidopsis thaliana) seedlings. Germination rates of hkt1 mutant seeds under salt stress remained unchanged by CaCl2 treatment in wild-type Arabidopsis, whereas pp2c49 mutant seeds displayed improved salt-stress tolerance in the absence of CaCl2 supplementation. Analysis of HKT1;1 and PP2C49 promoter activity revealed that CaCl2 treatment results in radicle-focused expression of HKT1;1 and reduction of the native radicle-exclusive expression of PP2C49. Ion-content analysis indicated that CaCl2 treatment improves K+ retention in germinating wild-type seedlings under salt stress, but not in hkt1 seedlings. Transgenic seedlings designed to exclusively express HKT1;1 in the radicle during germination displayed higher germination rates under salt stress than the wild type in the absence of CaCl2 treatment. Transcriptome analysis of germinating seedlings treated with CaCl2, NaCl, or both revealed 118 upregulated and 94 downregulated genes as responsive to the combined treatment. Bioinformatics analysis of the upstream sequences of CaCl2-NaCl-treatment-responsive upregulated genes revealed the abscisic acid response element CACGTGTC, a potential CaM-binding transcription activator-binding motif, as most prominent. Our findings suggest a key role for Ca2+ in mediating salt-stress responses during germination by regulating genes that function to maintain Na+ and K+ homeostasis, which is vital for seed germination under salt stress.
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Affiliation(s)
- Ancy E J Chandran
- Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Faculty of Agriculture, Food and Environment, Hebrew University of Jerusalem, Rehovot 7610001, Israel
| | - Aliza Finkler
- School of Plant Sciences and Food Security, Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Tom Aharon Hait
- The Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv 69978, Israel
- Department of Human Molecular Genetics and Biochemistry, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel
| | - Yvonne Kiere
- Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Faculty of Agriculture, Food and Environment, Hebrew University of Jerusalem, Rehovot 7610001, Israel
| | - Sivan David
- Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Faculty of Agriculture, Food and Environment, Hebrew University of Jerusalem, Rehovot 7610001, Israel
| | - Metsada Pasmanik-Chor
- School of Plant Sciences and Food Security, Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Doron Shkolnik
- Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Faculty of Agriculture, Food and Environment, Hebrew University of Jerusalem, Rehovot 7610001, Israel
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Naresh R, Srivastava R, Gunapati S, Sane AP, Sane VA. Functional characterization of GhNAC2 promoter conferring hormone- and stress-induced expression: a potential tool to improve growth and stress tolerance in cotton. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2024; 30:17-32. [PMID: 38435854 PMCID: PMC10901759 DOI: 10.1007/s12298-024-01411-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 11/14/2023] [Accepted: 01/10/2024] [Indexed: 03/05/2024]
Abstract
The GhNAC2 transcription factor identified from G. herbaceum improves root growth and drought tolerance through transcriptional reprogramming of phytohormone signaling. The promoter of such a versatile gene could serve as an important genetic engineering tool for biotechnological application. In this study, we identified and characterized the promoter of GhNAC2 to understand its regulatory mechanism. GhNAC2 transcription factor increased in root tissues in response to GA, ethylene, auxin, ABA, mannitol, and NaCl. In silico analysis revealed an overrepresentation of cis-regulatory elements associated with hormone signaling, stress responses and root-, pollen-, and seed-specific promoter activity. To validate their role in GhNAC2 function/regulation, an 870-bp upstream regulatory sequence was fused with the GUS reporter gene (uidA) and expressed in Arabidopsis and cotton hairy roots for in planta characterization. Histochemical GUS staining indicated localized expression in root tips, root elongation zone, root primordia, and reproductive tissues under optimal growth conditions. Mannitol, NaCl, auxin, GA, and ABA, induced the promoter-driven GUS expression in all tissues while ethylene suppressed the promoter activity. The results show that the 870 nt fragment of the GhNAC2 promoter drives root-preferential expression and responds to phytohormonal and stress signals. In corroboration with promoter regulation, GA and ethylene pathways differentially regulated root growth in GhNAC2-expressing Arabidopsis. The findings suggest that differential promoter activity governs the expression of GhNAC2 in root growth and stress-related functions independently through specific promoter elements. This multifarious promoter can be utilized to develop yield and climate resilience in cotton by expanding the options to control gene regulation. Supplementary Information The online version contains supplementary material available at 10.1007/s12298-024-01411-2.
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Affiliation(s)
- Ram Naresh
- Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001 India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002 India
| | - Richa Srivastava
- Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001 India
| | - Samatha Gunapati
- Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001 India
- Present Address: Department of Agronomy and Plant Genetics, University of Minnesota, Saint Paul, MN 55108 USA
| | - Aniruddha P. Sane
- Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001 India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002 India
| | - Vidhu A. Sane
- Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001 India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002 India
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Saputro TB, Jakada BH, Chutimanukul P, Comai L, Buaboocha T, Chadchawan S. OsBTBZ1 Confers Salt Stress Tolerance in Arabidopsis thaliana. Int J Mol Sci 2023; 24:14483. [PMID: 37833931 PMCID: PMC10572369 DOI: 10.3390/ijms241914483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 09/11/2023] [Accepted: 09/15/2023] [Indexed: 10/15/2023] Open
Abstract
Rice (Oryza sativa L.), one of the most important commodities and a primary food source worldwide, can be affected by adverse environmental factors. The chromosome segment substitution line 16 (CSSL16) of rice is considered salt-tolerant. A comparison of the transcriptomic data of the CSSL16 line under normal and salt stress conditions revealed 511 differentially expressed sequence (DEseq) genes at the seedling stage, 520 DEseq genes in the secondary leaves, and 584 DEseq genes in the flag leaves at the booting stage. Four BTB genes, OsBTBZ1, OsBTBZ2, OsBTBN3, and OsBTBN7, were differentially expressed under salt stress. Interestingly, only OsBTBZ1 was differentially expressed at the seedling stage, whereas the other genes were differentially expressed at the booting stage. Based on the STRING database, OsBTBZ1 was more closely associated with other abiotic stress-related proteins than other BTB genes. The highest expression of OsBTBZ1 was observed in the sheaths of young leaves. The OsBTBZ1-GFP fusion protein was localized to the nucleus, supporting the hypothesis of a transcriptionally regulatory role for this protein. The bt3 Arabidopsis mutant line exhibited susceptibility to NaCl and abscisic acid (ABA) but not to mannitol. NaCl and ABA decreased the germination rate and growth of the mutant lines. Moreover, the ectopic expression of OsBTBZ1 rescued the phenotypes of the bt3 mutant line and enhanced the growth of wild-type Arabidopsis under stress conditions. These results suggest that OsBTBZ1 is a salt-tolerant gene functioning in ABA-dependent pathways.
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Affiliation(s)
- Triono B. Saputro
- Center of Excellence in Environment and Plant Physiology, Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; (T.B.S.); (B.H.J.)
- Program in Biotechnology, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Bello H. Jakada
- Center of Excellence in Environment and Plant Physiology, Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; (T.B.S.); (B.H.J.)
| | - Panita Chutimanukul
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Khlong Luang, Pathumthani, Bangkok 12120, Thailand;
| | - Luca Comai
- Genome Center and Department of Plant Biology, UC Davis, Davis, CA 95616, USA;
| | - Teerapong Buaboocha
- Center of Excellence in Molecular Crop, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand;
- Omics Science and Bioinformatics Center, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Supachitra Chadchawan
- Center of Excellence in Environment and Plant Physiology, Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; (T.B.S.); (B.H.J.)
- Omics Science and Bioinformatics Center, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand
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Li Z, Zhang Z, Liu Y, Ma Y, Lv X, Zhang D, Gu Q, Ke H, Wu L, Zhang G, Ma Z, Wang X, Sun Z. Identification and Expression Analysis of EPSPS and BAR Families in Cotton. PLANTS (BASEL, SWITZERLAND) 2023; 12:3366. [PMID: 37836107 PMCID: PMC10574212 DOI: 10.3390/plants12193366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 09/18/2023] [Accepted: 09/19/2023] [Indexed: 10/15/2023]
Abstract
Weeds seriously affect the yield and quality of crops. Because manual weeding is time-consuming and laborious, the use of herbicides becomes an effective way to solve the harm caused by weeds in fields. Both 5-enolpyruvyl shikimate-3-phosphate synthetase (EPSPS) and acetyltransferase genes (bialaphos resistance, BAR) are widely used to improve crop resistance to herbicides. However, cotton, as the most important natural fiber crop, is not tolerant to herbicides in China, and the EPSPS and BAR family genes have not yet been characterized in cotton. Therefore, we explore the genes of these two families to provide candidate genes for the study of herbicide resistance mechanisms. In this study, 8, 8, 4, and 5 EPSPS genes and 6, 6, 5, and 5 BAR genes were identified in allotetraploid Gossypium hirsutum and Gossypium barbadense, diploid Gossypium arboreum and Gossypium raimondii, respectively. Members of the EPSPS and BAR families were classified into three subgroups based on the distribution of phylogenetic trees, conserved motifs, and gene structures. In addition, the promoter sequences of EPSPS and BAR family members included growth and development, stress, and hormone-related cis-elements. Based on the expression analysis, the family members showed tissue-specific expression and differed significantly in response to abiotic stresses. Finally, qRT-PCR analysis revealed that the expression levels of GhEPSPS3, GhEPSPS4, and GhBAR1 were significantly upregulated after exogenous spraying of herbicides. Overall, we characterized the EPSPS and BAR gene families of cotton at the genome-wide level, which will provide a basis for further studying the functions of EPSPS and BAR genes during growth and development and herbicide stress.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | - Xingfen Wang
- State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory for Crop Germplasm Resources of Hebei, College of Agronomy, Hebei Agricultural University, Baoding 071000, China; (Z.L.); (Z.Z.); (Y.L.); (Y.M.); (X.L.); (D.Z.); (Q.G.); (H.K.); (L.W.); (G.Z.); (Z.M.)
| | - Zhengwen Sun
- State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory for Crop Germplasm Resources of Hebei, College of Agronomy, Hebei Agricultural University, Baoding 071000, China; (Z.L.); (Z.Z.); (Y.L.); (Y.M.); (X.L.); (D.Z.); (Q.G.); (H.K.); (L.W.); (G.Z.); (Z.M.)
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7
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Nguyen TT, Pham DT, Nguyen NH, Do PT, To HTM. The Germin-like protein gene OsGER4 is involved in heat stress response in rice root development. Funct Integr Genomics 2023; 23:271. [PMID: 37561192 DOI: 10.1007/s10142-023-01201-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Revised: 08/02/2023] [Accepted: 08/02/2023] [Indexed: 08/11/2023]
Abstract
Rice (Oryza sativa L.) is one of the most important dietary carbohydrate sources for half of the world's population. However, it is not well adapted to environmental stress conditions, necessitating to create new and improved varieties to help ensure sufficient rice production in the face of rising populations and shrinking arable land. Recently, the development of the CRISPR/Cas9 gene editing system has allowed researchers to study functional genomics and engineer new rice varieties with great efficiency compared to conventional methods. In this study, we investigate the involvement of OsGER4, a germin-like protein identified by a genome-wide association study that is associated with rice root development under a stress hormone jasmonic acids treatment. Analysis of the OsGER4 promoter region revealed a series of regulatory elements that connect this gene to ABA signaling and water stress response. Under heat stress, osger4 mutant lines produce a significantly lower crown root than wild-type Kitaake rice. The loss of OsGER4 also led to the reduction of lateral root development. Using the GUS promoter line, OsGER4 expression was detected in the epidermis of the crown root primordial, in the stele of the crown root, and subsequently in the primordial of the lateral root. Taken together, these results illustrated the involvement of OsGER4 in root development under heat stress by regulating auxin transport through plasmodesmata, under control by both ABA and auxin signaling.
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Affiliation(s)
- Trang Thi Nguyen
- University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology. 100000, Hanoi, Vietnam
| | - Dan The Pham
- University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology. 100000, Hanoi, Vietnam
| | - Nhung Hong Nguyen
- University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology. 100000, Hanoi, Vietnam
- Institute of Biotechnology, Vietnam Academy of Science and Technology. 100000, Hanoi, Vietnam
| | - Phat Tien Do
- Institute of Biotechnology, Vietnam Academy of Science and Technology. 100000, Hanoi, Vietnam
| | - Huong Thi Mai To
- University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology. 100000, Hanoi, Vietnam.
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8
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Li Z, Li X, He F. Non-structural carbohydrates contributed to cold tolerance and regeneration of Medicago sativa L. PLANTA 2023; 257:116. [PMID: 37171508 DOI: 10.1007/s00425-023-04154-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Accepted: 05/05/2023] [Indexed: 05/13/2023]
Abstract
MAIN CONCLUSION Soil water content only affected regeneration time, whereas the NSC content was related to the success of alfalfa regeneration. Non-structural carbohydrates (NSCs) are important factors influencing the overwintering and regeneration of alfalfa. In this study, we analyzed eight in-situ samplings at three depths of coarse roots (crown, 20 and 40 cm depths) during the overwintering period and assessed the dynamic change and allocation of root NSCs under three irrigation frequencies (irrigation once every second day/4 days/8 days). Primary results showed that: (i) before cold acclimation, irrigation once every second day was beneficial to the accumulation of soluble sugars and starch in crown tissues, which would be maintained until the following spring and accelerate the regeneration time of alfalfa; (ii) during the overwintering process, the soluble sugars and starch contents in the crown were significantly higher than those in deeper roots, and there was an asynchronous effect caused by the change in soluble sugars and starch among roots at three depths; and (iii) the change trend of soluble sugar and starch contents was consistent with that of semi-lethal temperature, and there was a significant negative correlation between the content of soluble sugar (R2 = 0.8046) and starch (R2 = 0.6332) and the semi-lethal temperature. This study demonstrated that NSCs are the key driver of cold tolerance and regeneration under the three irrigation frequencies evaluated. Our results provide further insight into the allocation of NSCs in winter. This improved understanding of the mechanism of overwintering will allow for improved water management of alfalfa in high latitude areas.
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Affiliation(s)
- Zhensong Li
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, No.2, Yuanmingyuan West Road, Haidian District, Beijing, 100193, China
| | - Xianglin Li
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, No.2, Yuanmingyuan West Road, Haidian District, Beijing, 100193, China
| | - Feng He
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, No.2, Yuanmingyuan West Road, Haidian District, Beijing, 100193, China.
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Lepri A, Longo C, Messore A, Kazmi H, Madia VN, Di Santo R, Costi R, Vittorioso P. Plants and Small Molecules: An Up-and-Coming Synergy. PLANTS (BASEL, SWITZERLAND) 2023; 12:1729. [PMID: 37111951 PMCID: PMC10145415 DOI: 10.3390/plants12081729] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 04/16/2023] [Accepted: 04/18/2023] [Indexed: 06/19/2023]
Abstract
The emergence of Arabidopsis thaliana as a model system has led to a rapid and wide improvement in molecular genetics techniques for studying gene function and regulation. However, there are still several drawbacks that cannot be easily solved with molecular genetic approaches, such as the study of unfriendly species, which are of increasing agronomic interest but are not easily transformed, thus are not prone to many molecular techniques. Chemical genetics represents a methodology able to fill this gap. Chemical genetics lies between chemistry and biology and relies on small molecules to phenocopy genetic mutations addressing specific targets. Advances in recent decades have greatly improved both target specificity and activity, expanding the application of this approach to any biological process. As for classical genetics, chemical genetics also proceeds with a forward or reverse approach depending on the nature of the study. In this review, we addressed this topic in the study of plant photomorphogenesis, stress responses and epigenetic processes. We have dealt with some cases of repurposing compounds whose activity has been previously proven in human cells and, conversely, studies where plants have been a tool for the characterization of small molecules. In addition, we delved into the chemical synthesis and improvement of some of the compounds described.
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Affiliation(s)
- A. Lepri
- Department of Biology and Biotechnology “Charles Darwin”, Sapienza University of Rome, 00185 Rome, Italy; (A.L.); (C.L.); (H.K.)
| | - C. Longo
- Department of Biology and Biotechnology “Charles Darwin”, Sapienza University of Rome, 00185 Rome, Italy; (A.L.); (C.L.); (H.K.)
| | - A. Messore
- Department of Chemistry and Technology of Drug, Istituto Pasteur Italia—Fondazione Cenci Bolognetti, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy; (A.M.); (V.N.M.); (R.D.S.); (R.C.)
| | - H. Kazmi
- Department of Biology and Biotechnology “Charles Darwin”, Sapienza University of Rome, 00185 Rome, Italy; (A.L.); (C.L.); (H.K.)
| | - V. N. Madia
- Department of Chemistry and Technology of Drug, Istituto Pasteur Italia—Fondazione Cenci Bolognetti, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy; (A.M.); (V.N.M.); (R.D.S.); (R.C.)
| | - R. Di Santo
- Department of Chemistry and Technology of Drug, Istituto Pasteur Italia—Fondazione Cenci Bolognetti, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy; (A.M.); (V.N.M.); (R.D.S.); (R.C.)
| | - R. Costi
- Department of Chemistry and Technology of Drug, Istituto Pasteur Italia—Fondazione Cenci Bolognetti, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy; (A.M.); (V.N.M.); (R.D.S.); (R.C.)
| | - P. Vittorioso
- Department of Biology and Biotechnology “Charles Darwin”, Sapienza University of Rome, 00185 Rome, Italy; (A.L.); (C.L.); (H.K.)
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10
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Podia V, Chatzopoulos D, Milioni D, Stravopodis DJ, Dervisi I, Roussis A, Roubelakis-Angelakis KA, Haralampidis K. GUS Reporter-Aided Promoter Deletion Analysis of A. thaliana POLYAMINE OXIDASE 3. Int J Mol Sci 2023; 24:ijms24032317. [PMID: 36768644 PMCID: PMC9916862 DOI: 10.3390/ijms24032317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2022] [Revised: 01/18/2023] [Accepted: 01/19/2023] [Indexed: 01/26/2023] Open
Abstract
Polyamine oxidases (PAOs) have been correlated with numerous physiological and developmental processes, as well as responses to biotic and abiotic stress conditions. Their transcriptional regulation is driven by signals generated by various developmental and environmental cues, including phytohormones. However, the inductive mechanism(s) of the corresponding genes remains elusive. Out of the five previously characterized Arabidopsis PAO genes, none of their regulatory sequences have been analyzed to date. In this study, a GUS reporter-aided promoter deletion approach was used to investigate the transcriptional regulation of AtPAO3 during normal growth and development as well as under various inductive environments. AtPAO3 contains an upstream open reading frame (uORF) and a short inter-cistronic sequence, while the integrity of both appears to be crucial for the proper regulation of gene expression. The full-length promoter contains several cis-acting elements that regulate the tissue-specific expression of AtPAO3 during normal growth and development. Furthermore, a number of TFBS that are involved in gene induction under various abiotic stress conditions display an additive effect on gene expression. Taken together, our data indicate that the transcription of AtPAO3 is regulated by multiple environmental factors, which probably work alongside hormonal signals and shed light on the fine-tuning mechanisms of PAO regulation.
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Affiliation(s)
- Varvara Podia
- Section of Botany, Biology Department, National and Kapodistrian University of Athens, 15784 Athens, Greece
| | - Dimitris Chatzopoulos
- Section of Cell Biology and Biophysics, Biology Department, National and Kapodistrian University of Athens, 15784 Athens, Greece
| | - Dimitra Milioni
- Biotechnology Department, Agricultural University of Athens, 11855 Athens, Greece
| | - Dimitrios J. Stravopodis
- Section of Cell Biology and Biophysics, Biology Department, National and Kapodistrian University of Athens, 15784 Athens, Greece
| | - Irene Dervisi
- Section of Botany, Biology Department, National and Kapodistrian University of Athens, 15784 Athens, Greece
| | - Andreas Roussis
- Section of Botany, Biology Department, National and Kapodistrian University of Athens, 15784 Athens, Greece
| | | | - Kosmas Haralampidis
- Section of Botany, Biology Department, National and Kapodistrian University of Athens, 15784 Athens, Greece
- Correspondence: ; Tel.: +0030-2107274131
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11
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Li X, Deng D, Cataltepe G, Román Á, Buckley CR, Cassano Monte‐Bello C, Skirycz A, Caldana C, Haydon MJ. A reactive oxygen species Ca 2+ signalling pathway identified from a chemical screen for modifiers of sugar-activated circadian gene expression. THE NEW PHYTOLOGIST 2022; 236:1027-1041. [PMID: 35842791 PMCID: PMC9804775 DOI: 10.1111/nph.18380] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Accepted: 07/13/2022] [Indexed: 06/10/2023]
Abstract
Sugars are essential metabolites for energy and anabolism that can also act as signals to regulate plant physiology and development. Experimental tools to disrupt major sugar signalling pathways are limited. We performed a chemical screen for modifiers of activation of circadian gene expression by sugars to discover pharmacological tools to investigate and manipulate plant sugar signalling. Using a library of commercially available bioactive compounds, we identified 75 confident hits that modified the response of a circadian luciferase reporter to sucrose in dark-adapted Arabidopsis thaliana seedlings. We validated the transcriptional effect on a subset of the hits and measured their effects on a range of sugar-dependent phenotypes for 13 of these chemicals. Chemicals were identified that appear to influence known and unknown sugar signalling pathways. Pentamidine isethionate was identified as a modifier of a sugar-activated Ca2+ signal that acts as a calmodulin inhibitor downstream of superoxide in a metabolic signalling pathway affecting circadian rhythms, primary metabolism and plant growth. Our data provide a resource of new experimental tools to manipulate plant sugar signalling and identify novel components of these pathways.
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Affiliation(s)
- Xiang Li
- School of BioSciencesUniversity of MelbourneParkvilleVic.3010Australia
| | - Dongjing Deng
- School of BioSciencesUniversity of MelbourneParkvilleVic.3010Australia
| | - Gizem Cataltepe
- School of BioSciencesUniversity of MelbourneParkvilleVic.3010Australia
- Max Planck Institute of Molecular Plant Physiology14476PotsdamGermany
| | - Ángela Román
- School of BioSciencesUniversity of MelbourneParkvilleVic.3010Australia
| | | | | | | | - Camila Caldana
- Max Planck Institute of Molecular Plant Physiology14476PotsdamGermany
| | - Michael J. Haydon
- School of BioSciencesUniversity of MelbourneParkvilleVic.3010Australia
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12
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To HTM, Pham DT, Le Thi VA, Nguyen TT, Tran TA, Ta AS, Chu HH, Do PT. The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 112:860-874. [PMID: 36134434 DOI: 10.1111/tpj.15987] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Revised: 09/13/2022] [Accepted: 09/15/2022] [Indexed: 06/16/2023]
Abstract
In rice (Oryza sativa L.), crown roots (CRs) have many important roles in processes such as root system expansion, water and mineral uptake, and adaptation to environmental stresses. Phytohormones such as auxin, cytokinin, and ethylene are known to control CR initiation and development in rice. However, the role of jasmonic acid (JA) in CR development remained elusive. Here, we report that JA promotes CR development by regulating OsGER4, a rice Germin-like protein. Root phenotyping analysis revealed that exogenous JA treatment induced an increase in CR number in a concentration-dependent manner. A subsequent genome-wide association study and gene expression analyses pinpointed a strong association between the Germin-like protein OsGER4 and the increase in CR number under exogenous JA treatment. The ProGER4::GUS reporter line showed that OsGER4 is a hormone-responsive gene involved in various stress responses, mainly confined to epidermal and vascular tissues during CR primordia development and to vascular bundles of mature crown and lateral roots. Notable changes in OsGER4 expression patterns caused by the polar auxin transport inhibitor NPA support its connection to auxin signaling. Phenotyping experiments with OsGER4 knockout mutants confirmed that this gene is required for CR development under exogenous JA treatment. Overall, our results provide important insights into JA-mediated regulation of CR development in rice.
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Affiliation(s)
- Huong Thi Mai To
- University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, 100000, Vietnam
| | - Dan The Pham
- University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, 100000, Vietnam
| | - Van Anh Le Thi
- University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, 100000, Vietnam
| | - Trang Thi Nguyen
- University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, 100000, Vietnam
| | - Tuan Anh Tran
- University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, 100000, Vietnam
| | - Anh Son Ta
- School of Applied Mathematics and Informatics, University of Science and Technology of Hanoi, 1 Dai Co Viet, Hai Ba Trung, Hanoi, Vietnam
| | - Ha Hoang Chu
- Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, 100000, Vietnam
- Graduate University of Science and Technology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, 100000, Vietnam
| | - Phat Tien Do
- Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, 100000, Vietnam
- Graduate University of Science and Technology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, 100000, Vietnam
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13
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Michailidis M, Titeli VS, Karagiannis E, Feidaki K, Ganopoulos I, Tanou G, Argiriou A, Molassiotis A. Tissue-specific transcriptional analysis outlines calcium-induced core metabolic changes in sweet cherry fruit. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 189:139-152. [PMID: 36087439 DOI: 10.1016/j.plaphy.2022.08.022] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Revised: 08/15/2022] [Accepted: 08/25/2022] [Indexed: 06/15/2023]
Abstract
The role of calcium in fruit ripening has been established, however knowledge regarding the molecular analysis at fruit tissue-level is still lacking. To address this, we examined the impact of foliar-applied calcium (0.5% CaCl2) in the ripening metabolism in skin and flesh tissues of the sweet cherry 'Tragana Edessis' fruit at the harvest stage. Exogenously applied calcium increased endogenous calcium level in flesh tissue and reduced fruit respiration rate and cracking traits. Fruit metabolomic along with transcriptomic analysis unraveled common and tissue-specific metabolic pathways associated with calcium feeding. Treatment with calcium diminished several alcohols (arabitol, sorbitol), sugars (fructose, maltose), acids (glyceric acid, threonic acid) and increased ribose and proline in both fruit tissues. Moreover, numerous primary metabolites, such as proline and galacturonic acid, were differentially accumulated in calcium-exposed tissues. Calcium-affected genes that involved in ubiquitin/ubl conjugation and cell wall biogenesis/degradation were differentially expressed between skin and flesh samples. Notably, skin and flesh tissues shared common calcium-responsive genes and exhibited substantial similarity in their expression patterns. In both tissues, calcium activated gene expression, most strongly those involved in plant-pathogen interaction, plant hormone signaling and MAPK signaling pathway, thus affecting related metabolic processes. By contrast, calcium depressed the expression of genes related to TCA cycle, oxidative phosphorylation, and starch/sucrose metabolism in both tissues. This work established both calcium-driven common and specialized metabolic suites in skin and flesh cherry tissues, demonstrating the utility of this approach to characterize fundamental aspects of calcium in fruit physiology.
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Affiliation(s)
- Michail Michailidis
- Laboratory of Pomology, Department of Horticulture, Aristotle University of Thessaloniki, Thessaloniki, Thermi, 57001, Greece
| | - Vaia Styliani Titeli
- Laboratory of Pomology, Department of Horticulture, Aristotle University of Thessaloniki, Thessaloniki, Thermi, 57001, Greece
| | - Evangelos Karagiannis
- Laboratory of Pomology, Department of Horticulture, Aristotle University of Thessaloniki, Thessaloniki, Thermi, 57001, Greece
| | - Kyriaki Feidaki
- Center for Research and Technology Hellas, Institute of Applied Biosciences, P.O. Box 60361, Thessaloniki, GR, 57001, Greece
| | - Ioannis Ganopoulos
- Institute of Plant Breeding and Genetic Resources, ELGO-DEMETER, Thessaloniki, Thermi, 57001, Greece; Joint Laboratory of Horticulture, ELGO-DEMETER, Thessaloniki, Thermi, 57001, Greece
| | - Georgia Tanou
- Joint Laboratory of Horticulture, ELGO-DEMETER, Thessaloniki, Thermi, 57001, Greece; Institute of Soil and Water Resources, ELGO-DEMETER, Thessaloniki, Thermi, 57001, Greece
| | - Anagnostis Argiriou
- Center for Research and Technology Hellas, Institute of Applied Biosciences, P.O. Box 60361, Thessaloniki, GR, 57001, Greece
| | - Athanassios Molassiotis
- Laboratory of Pomology, Department of Horticulture, Aristotle University of Thessaloniki, Thessaloniki, Thermi, 57001, Greece.
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14
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Li B, He S, Zheng Y, Wang Y, Lang X, Wang H, Fan K, Hu J, Ding Z, Qian W. Genome-wide identification and expression analysis of the calmodulin-binding transcription activator (CAMTA) family genes in tea plant. BMC Genomics 2022; 23:667. [PMID: 36138347 PMCID: PMC9502961 DOI: 10.1186/s12864-022-08894-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Accepted: 09/16/2022] [Indexed: 11/12/2022] Open
Abstract
Background As a type of calmodulin binding protein, CAMTAs are widely involved in vegetative and reproductive processes as well as various hormonal and stress responses in plants. To study the functions of CAMTA genes in tea plants, we investigated bioinformatics analysis and performed qRT-PCR analysis of the CAMTA gene family by using the genomes of ‘ShuChaZao’ tea plant cultivar. Results In this study, 6 CsCAMTAs were identified from tea plant genome. Bioinformatics analysis results showed that all CsCAMTAs contained six highly conserved functional domains. Tissue-specific analysis results found that CsCAMTAs played great roles in mediating tea plant aging and flowering periods. Under hormone and abiotic stress conditions, most CsCAMTAs were upregulated at different time points under different treatment conditions. In addition, the expression levels of CsCAMTA1/3/4/6 were higher in cold-resistant cultivar ‘LongJing43’ than in the cold-susceptible cultivar ‘DaMianBai’ at cold acclimation stage, while CsCAMTA2/5 showed higher expression levels in ‘DaMianBai’ than in ‘LongJing43’ during entire cold acclimation periods. Conclusions In brief, the present results revealed that CsCAMTAs played great roles in tea plant growth, development and stress responses, which laid the foundation for deeply exploring their molecular regulation mechanisms. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-022-08894-x.
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Affiliation(s)
- Bo Li
- College of Horticulture, Qingdao Agricultural University, Qingdao, 266109, China.,Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao, 266109, China
| | - Shan He
- College of Horticulture, Qingdao Agricultural University, Qingdao, 266109, China.,Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao, 266109, China
| | - Yiqian Zheng
- College of Horticulture, Qingdao Agricultural University, Qingdao, 266109, China.,Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao, 266109, China
| | - Yu Wang
- College of Horticulture, Qingdao Agricultural University, Qingdao, 266109, China.,Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao, 266109, China
| | - Xuxu Lang
- College of Horticulture, Qingdao Agricultural University, Qingdao, 266109, China.,Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao, 266109, China
| | - Huan Wang
- College of Horticulture, Qingdao Agricultural University, Qingdao, 266109, China.,Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao, 266109, China
| | - Kai Fan
- College of Horticulture, Qingdao Agricultural University, Qingdao, 266109, China.,Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao, 266109, China
| | - Jianhui Hu
- College of Horticulture, Qingdao Agricultural University, Qingdao, 266109, China.,Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao, 266109, China
| | - Zhaotang Ding
- College of Horticulture, Qingdao Agricultural University, Qingdao, 266109, China.,Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao, 266109, China
| | - Wenjun Qian
- College of Horticulture, Qingdao Agricultural University, Qingdao, 266109, China. .,Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao, 266109, China.
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15
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Numan M, Guo W, Choi S, Wang X, Du B, Jin W, Bhandari RK, Ligaba‐Osena A. Analysis of miRNAs responsive to long-term calcium deficiency in tef ( Eragrostis tef (Zucc.) Trotter). PLANT DIRECT 2022; 6:e400. [PMID: 35582629 PMCID: PMC9090557 DOI: 10.1002/pld3.400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/26/2021] [Revised: 03/23/2022] [Accepted: 04/07/2022] [Indexed: 06/15/2023]
Abstract
MicroRNAs (miRNAs) play an important role in growth, development, stress resilience, and epigenetic modifications of plants. However, the effect of calcium (Ca2+) deficiency on miRNA expression in the orphan crop tef (Eragrostis tef) remains unknown. In this study, we analyzed expression of miRNAs in roots and shoots of tef in response to Ca2+ treatment. miRNA-seq followed by bioinformatic analysis allowed us to identify a large number of small RNAs (sRNAs) ranging from 17 to 35 nt in length. A total of 1380 miRNAs were identified in tef experiencing long-term Ca2+ deficiency while 1495 miRNAs were detected in control plants. Among the miRNAs identified in this study, 161 miRNAs were similar with those previously characterized in other plant species and 348 miRNAs were novel, while the remaining miRNAs were uncharacterized. Putative target genes and their functions were predicted for all the known and novel miRNAs that we identified. Based on gene ontology (GO) analysis, the predicted target genes are known to have various biological and molecular functions including calcium uptake and transport. Pairwise comparison of differentially expressed miRNAs revealed that some miRNAs were specifically enriched in roots or shoots of low Ca2+-treated plants. Further characterization of the miRNAs and their targets identified in this study may help in understanding Ca2+ deficiency responses in tef and related orphan crops.
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Affiliation(s)
- Muhammad Numan
- Present address:
Laboratory of Plant Molecular Biology and Biotechnology, Department of BiologyUniversity of North Carolina GreensboroGreensboroNorth CarolinaUSA
| | - Wanli Guo
- Present address:
Laboratory of Plant Molecular Biology and Biotechnology, Department of BiologyUniversity of North Carolina GreensboroGreensboroNorth CarolinaUSA
- Present address:
Department of Biotechnology, College of Life Sciences and MedicineZhejiang Sci‐Tech UniversityHangzhouChina
| | - Sang‐Chul Choi
- Present address:
Laboratory of Plant Molecular Biology and Biotechnology, Department of BiologyUniversity of North Carolina GreensboroGreensboroNorth CarolinaUSA
| | - Xuegeng Wang
- Laboratory of Environmental Epigenetics, Department of BiologyUniversity of North Carolina GreensboroGreensboroNorth CarolinaUSA
- Institute of Modern Aquaculture Science and Engineering, College of Life SciencesSouth China Normal UniversityGuangzhouP. R. China
| | - Boxuan Du
- Present address:
Department of Biotechnology, College of Life Sciences and MedicineZhejiang Sci‐Tech UniversityHangzhouChina
| | - Weibo Jin
- Present address:
Department of Biotechnology, College of Life Sciences and MedicineZhejiang Sci‐Tech UniversityHangzhouChina
| | - Ramji Kumar Bhandari
- Laboratory of Environmental Epigenetics, Department of BiologyUniversity of North Carolina GreensboroGreensboroNorth CarolinaUSA
| | - Ayalew Ligaba‐Osena
- Present address:
Laboratory of Plant Molecular Biology and Biotechnology, Department of BiologyUniversity of North Carolina GreensboroGreensboroNorth CarolinaUSA
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16
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Sukiran NA, Pollastri S, Steel PG, Knight MR. Plant growth promotion by the interaction of a novel synthetic small molecule with GA-DELLA function. PLANT DIRECT 2022; 6:e398. [PMID: 35492684 PMCID: PMC9039627 DOI: 10.1002/pld3.398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 01/23/2022] [Accepted: 03/16/2022] [Indexed: 05/14/2023]
Abstract
Synthesized small molecules are useful as tools to investigate hormonal signaling involved in plant growth and development. They are also important as agrochemicals to promote beneficial properties of crops in the field. We describe here the synthesis and mode of action of a novel growth-promoting chemical, A1. A1 stimulates enhanced growth in both shoot and root tissues of plants, acting by increasing both dry and fresh weight. This suggests that A1 not only promotes uptake of water but also increases production of cellular material. A1 treatment of Arabidopsisleads to the degradation of DELLA growth-inhibitory proteins suggesting that A1-mediated growth promotion is dependent upon this mechanism. We performed genetic analysis to confirm this and further dissect the mechanism of A1 action upon growth in Arabidopsis. A quintuple dellamutant was insensitive to A1, confirming that the mode of action was indeed via a DELLA-dependent mechanism. The ga1-5gibberellin synthesis mutant was similarly insensitive, suggesting that to promote growth in ArabidopsisA1 requires the presence of endogenous gibberellins. This was further suggested by the observation that double mutants of GID1 gibberellin receptor genes were insensitive to A1. Taken together, our data suggest that A1 acts to enhance sensitivity to endogenous gibberellins thus leading to observed enhanced growth via DELLA degradation. A1 and related compounds will be useful to identify novel signaling components involved in plant growth and development, and as agrochemicals suitable for a wide range of crop species.
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Affiliation(s)
- Nur Afiqah Sukiran
- Department of BiosciencesDurham UniversityDurhamUK
- Department of ChemistryDurham UniversityDurhamUK
| | - Susanna Pollastri
- Institute for Sustainable Plant ProtectionNational Research Council of ItalyFlorenceItaly
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17
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Soudani S, Poza-Carrión C, De la Cruz Gómez N, González-Coloma A, Andrés MF, Berrocal-Lobo M. Essential Oils Prime Epigenetic and Metabolomic Changes in Tomato Defense Against Fusarium oxysporum. FRONTIERS IN PLANT SCIENCE 2022; 13:804104. [PMID: 35422834 PMCID: PMC9002333 DOI: 10.3389/fpls.2022.804104] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Accepted: 02/07/2022] [Indexed: 05/10/2023]
Abstract
In this work, we studied the direct and indirect plant protection effects of an Artemisia absinthium essential oil (AEO) on tomato seedlings against Fusarium oxysporum sp. oxysporum radicis lycopersici (Fol). AEO exhibited a toxic effect in vitro against Fol. Additionally, tomato seedlings germinated from seeds pretreated with AEO and grown hydroponically were protected against Fol. Plant disease symptoms, including, water and fresh weight loss, tissue necrosis, and chlorosis were less pronounced in AEO-treated seedlings. AEO also contributed to plant defenses by increasing callose deposition and the production of reactive oxygen species (ROS) on seed surfaces without affecting seed germination or plant development. The essential oil seed coating also primed a durable tomato seedling defense against the fungus at later stages of plant development. RNA-seq and metabolomic analysis performed on seedlings after 12 days showed that the AEO treatment on seeds induced transcriptomic and metabolic changes. The metabolomic analysis showed an induction of vanillic acid, coumarin, lycopene, oleamide, and an unknown metabolite of m/z 529 in the presence of Fol. The StNRPD2 gene, the second largest component of RNA polymerases IV and V directly involved in de novo cytosine methylation by RNA-directed DNA methylation (RdDM), was highly induced in the presence of AEO. The host methionine cycle (MTC) controlling trans-methylation reactions, was also altered by AEO through the high induction of S-adenosyl methionine transferases (SAMts). Our results suggest that AEO treatment could induce de novo epigenetic changes in tomato, modulating the speed and extent of its immune response to Fol. The EO-seed coating could be a new strategy to prime durable tomato resistance, compatible with other environmentally friendly biopesticides.
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Affiliation(s)
- Serine Soudani
- Department of Systems and Natural Resources, School of Forestry Engineering and Natural Environment, Polytechnical University of Madrid, Madrid, Spain
| | - César Poza-Carrión
- Department of Systems and Natural Resources, School of Forestry Engineering and Natural Environment, Polytechnical University of Madrid, Madrid, Spain
| | - Noelia De la Cruz Gómez
- Department of Systems and Natural Resources, School of Forestry Engineering and Natural Environment, Polytechnical University of Madrid, Madrid, Spain
| | - Azucena González-Coloma
- Instituto de Ciencias Agrarias, Consejo Superior de Investigaciones Científicas, Madrid, Spain
| | - María Fé Andrés
- Instituto de Ciencias Agrarias, Consejo Superior de Investigaciones Científicas, Madrid, Spain
| | - Marta Berrocal-Lobo
- Department of Systems and Natural Resources, School of Forestry Engineering and Natural Environment, Polytechnical University of Madrid, Madrid, Spain
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18
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Wang D, Huang F, Yan P, Nie Y, Chen L, Luo J, Zhao H, Wang Y, Han S. Cytosolic and Nucleosolic Calcium-Regulated Molecular Networks in Response to Long-Term Treatment with Abscisic Acid and Methyl Jasmonate in Arabidopsis thaliana. Genes (Basel) 2022; 13:genes13030524. [PMID: 35328077 PMCID: PMC8950999 DOI: 10.3390/genes13030524] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Revised: 03/10/2022] [Accepted: 03/14/2022] [Indexed: 12/02/2022] Open
Abstract
Calcium acts as a universal secondary messenger that transfers developmental cues and stress signals for gene expression and adaptive growth. A prior study showed that abiotic stresses induce mutually independent cytosolic Ca2+ ([Ca2+]cyt) and nucleosolic Ca2+ ([Ca2+]nuc) increases in Arabidopsis thaliana root cells. However, gene expression networks deciphering [Ca2+]cyt and [Ca2+]nuc signalling pathways remain elusive. Here, using transgenic A. thaliana to selectively impair abscisic acid (ABA)- or methyl jasmonate (MeJA)-induced [Ca2+]cyt and [Ca2+]nuc increases, we identified [Ca2+]cyt- and [Ca2+]nuc-regulated ABA- or MeJA-responsive genes with a genome oligo-array. Gene co-expression network analysis revealed four Ca2+ signal-decoding genes, CAM1, CIPK8, GAD1, and CPN20, as hub genes co-expressed with Ca2+-regulated hormone-responsive genes and hormone signalling genes. Luciferase complementation imaging assays showed interactions among CAM1, CIPK8, and GAD1; they also showed interactions with several proteins encoded by Ca2+-regulated hormone-responsive genes. Furthermore, CAM1 and CIPK8 were required for MeJA-induced stomatal closure; they were associated with ABA-inhibited seed germination. Quantitative reverse transcription polymerase chain reaction analysis showed the unique expression pattern of [Ca2+]-regulated hormone-responsive genes in cam1, cipk8, and gad1. This comprehensive understanding of distinct Ca2+ and hormonal signalling will allow the application of approaches to uncover novel molecular foundations for responses to developmental and stress signals in plants.
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Affiliation(s)
- Doudou Wang
- Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing 100875, China; (D.W.); (F.H.); (Y.N.); (L.C.); (J.L.); (H.Z.); (Y.W.)
| | - Feifei Huang
- Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing 100875, China; (D.W.); (F.H.); (Y.N.); (L.C.); (J.L.); (H.Z.); (Y.W.)
| | - Pengcheng Yan
- Department of Computational Biology, Beijing Computing Center, Beijing 100094, China;
| | - Yanli Nie
- Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing 100875, China; (D.W.); (F.H.); (Y.N.); (L.C.); (J.L.); (H.Z.); (Y.W.)
| | - Lvli Chen
- Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing 100875, China; (D.W.); (F.H.); (Y.N.); (L.C.); (J.L.); (H.Z.); (Y.W.)
| | - Jin Luo
- Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing 100875, China; (D.W.); (F.H.); (Y.N.); (L.C.); (J.L.); (H.Z.); (Y.W.)
| | - Heping Zhao
- Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing 100875, China; (D.W.); (F.H.); (Y.N.); (L.C.); (J.L.); (H.Z.); (Y.W.)
| | - Yingdian Wang
- Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing 100875, China; (D.W.); (F.H.); (Y.N.); (L.C.); (J.L.); (H.Z.); (Y.W.)
| | - Shengcheng Han
- Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing 100875, China; (D.W.); (F.H.); (Y.N.); (L.C.); (J.L.); (H.Z.); (Y.W.)
- Correspondence:
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Basu D, South PF. Design and Analysis of Native Photorespiration Gene Motifs of Promoter Untranslated Region Combinations Under Short Term Abiotic Stress Conditions. FRONTIERS IN PLANT SCIENCE 2022; 13:828729. [PMID: 35251099 PMCID: PMC8888687 DOI: 10.3389/fpls.2022.828729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 01/18/2022] [Indexed: 05/09/2023]
Abstract
Quantitative traits are rarely controlled by a single gene, thereby making multi-gene transformation an indispensable component of modern synthetic biology approaches. However, the shortage of unique gene regulatory elements (GREs) for the robust simultaneous expression of multiple nuclear transgenes is a major bottleneck that impedes the engineering of complex pathways in plants. In this study, we compared the transcriptional efficacies of a comprehensive list of well-documented promoter and untranslated region (UTR) sequences side by side. The strength of GREs was examined by a dual-luciferase assay in conjunction with transient expression in tobacco. In addition, we created suites of new GREs with higher transcriptional efficacies by combining the best performing promoter-UTR sequences. We also tested the impact of elevated temperature and high irradiance on the effectiveness of these GREs. While constitutive promoters ensure robust expression of transgenes, they lack spatiotemporal regulations exhibited by native promoters. Here, we present a proof-of-principle study on the characterization of synthetic promoters based on cis-regulatory elements of three key photorespiratory genes. This conserved biochemical process normally increases under elevated temperature, low CO2, and high irradiance stress conditions and results in ∼25% loss in fixed CO2. To select stress-responsive cis-regulatory elements involved in photorespiration, we analyzed promoters of two chloroplast transporters (AtPLGG1 and AtBASS6) and a key plastidial enzyme, AtPGLP using PlantPAN3.0 and AthaMap. Our results suggest that these motifs play a critical role for PLGG1, BASS6, and PGLP in mediating response to elevated temperature and high-intensity light stress. These findings will not only enable the advancement of metabolic and genetic engineering of photorespiration but will also be instrumental in related synthetic biology approaches.
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Affiliation(s)
| | - Paul F. South
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, United States
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Tang W, Wang X, Kou M, Yan H, Gao R, Li C, Song W, Zhang Y, Wang X, Liu Y, Li Z, Li Q. The sweetpotato GIGANTEA gene promoter is co-regulated by phytohormones and abiotic stresses in Arabidopsis thaliana. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 168:143-154. [PMID: 34628175 DOI: 10.1016/j.plaphy.2021.08.047] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Revised: 08/19/2021] [Accepted: 08/29/2021] [Indexed: 06/13/2023]
Abstract
GIGANTEA (GI) is known to play significant roles in various molecular pathways. Nevertheless, the underlying mechanism of the transcriptional regulation of GI remains obscure in sweetpotato. In the present study, a 1518-bp promoter sequence was obtained from the Ipomoea batatas GIGANTEA (IbGI) gene, and several potential cis-elements responsive to light, phytohormones and abiotic stresses were identified by in silico analysis. In order to functionally validate the IbGI promoter, the 5' deletion analysis of the promoter was performed by cloning the full-length promoter (D0) and its four deletion fragments, D1 (1235 bp), D2 (896 bp), D3 (549 bp) and D4 (286 bp), upstream of the β-glucuronidase (GUS) reporter gene. Then, these were stably transformed in Arabidopsis plants. All transgenic seedlings exhibited stable GUS activity in the condition of control, but with decreased activity in the condition of most treatments. Interestingly, merely D1 seedlings that contained an abscisic acid responsive cis-element (ABRE-element) had an extremely powerful GUS activity under the treatment of ABA, which implies that fragment spanning nucleotides of -1235 to -896 bp might be a crucial component for the responses of ABA. Eight different types of potential transcriptional regulators of IbGI were isolated by Y1H, including TGA2.2, SPLT1 and GADPH, suggesting the complex interaction mode of protein-DNA on the IbGI promoter. Taken together, these present results help to better understand the transcriptional regulation mechanism of the IbGI gene, and provides an insight into the IbGI promoter, which can be considered as an alternation for breeding transgenic plants.
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Affiliation(s)
- Wei Tang
- Institute of Integrative Plant Biology, Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal University, Xuzhou, 221116, PR China; Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, 221131, PR China
| | - Xiaoxiao Wang
- Institute of Integrative Plant Biology, Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal University, Xuzhou, 221116, PR China; Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, 221131, PR China
| | - Meng Kou
- Institute of Integrative Plant Biology, Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal University, Xuzhou, 221116, PR China; Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, 221131, PR China
| | - Hui Yan
- Institute of Integrative Plant Biology, Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal University, Xuzhou, 221116, PR China; Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, 221131, PR China
| | - Runfei Gao
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, 221131, PR China
| | - Chen Li
- Institute of Integrative Plant Biology, Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal University, Xuzhou, 221116, PR China; Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, 221131, PR China
| | - Weihan Song
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, 221131, PR China
| | - Yungang Zhang
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, 221131, PR China
| | - Xin Wang
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, 221131, PR China
| | - Yaju Liu
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, 221131, PR China
| | - Zongyun Li
- Institute of Integrative Plant Biology, Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal University, Xuzhou, 221116, PR China.
| | - Qiang Li
- Institute of Integrative Plant Biology, Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal University, Xuzhou, 221116, PR China; Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, 221131, PR China.
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Kansal S, Panwar V, Mutum RD, Raghuvanshi S. Investigations on Regulation of MicroRNAs in Rice Reveal [Ca 2+] cyt Signal Transduction Regulated MicroRNAs. FRONTIERS IN PLANT SCIENCE 2021; 12:720009. [PMID: 34733300 PMCID: PMC8558223 DOI: 10.3389/fpls.2021.720009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Accepted: 09/15/2021] [Indexed: 06/13/2023]
Abstract
MicroRNAs (miRNAs) are critical components of the multidimensional regulatory networks in eukaryotic systems. Given their diverse spectrum of function, it is apparent that the transcription, processing, and activity of the miRNAs themselves, is very dynamically regulated. One of the most important and universally implicated signaling molecules is [Ca2+]cyt. It is known to regulate a plethora of developmental and metabolic processes in both plants and animals; however, its impact on the regulation of miRNA expression is relatively less explored. The current study employed a combination of internal and external calcium channel inhibitors to establishing that [Ca2+]cyt signatures actively regulate miRNA expression in rice. Involvement of [Ca2+]cyt in the regulation of miRNA expression was further confirmed by treatment with calcimycin, the calcium ionophore. Modulation of the cytosolic calcium levels was also found to regulate the drought-responsive expression as well as ABA-mediated response of miRNA genes in rice seedlings. The study further establishes the role of calmodulins and Calmodulin-binding Transcription Activators (CAMTAs) as important components of the signal transduction schema that regulates miRNA expression. Yeast one-hybrid assay established that OsCAMTA4 & 6 are involved in the transcriptional regulation of miR156a and miR167h. Thus, the study was able to establish that [Ca2+]cyt is actively involved in regulating the expression of miRNA genes both under control and stress conditions.
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He J, Halitschke R, Schuman MC, Baldwin IT. Light dominates the diurnal emissions of herbivore-induced volatiles in wild tobacco. BMC PLANT BIOLOGY 2021; 21:401. [PMID: 34461825 PMCID: PMC8404343 DOI: 10.1186/s12870-021-03179-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Accepted: 08/09/2021] [Indexed: 05/23/2023]
Abstract
BACKGROUND Timing is everything when it comes to the fitness outcome of a plant's ecological interactions, and accurate timing is particularly relevant for interactions with herbivores or mutualists that are based on ephemeral emissions of volatile organic compounds. Previous studies of the wild tobacco N. attenuata have found associations between the diurnal timing of volatile emissions, and daytime predation of herbivores by their natural enemies. RESULTS Here, we investigated the role of light in regulating two biosynthetic groups of volatiles, terpenoids and green leaf volatiles (GLVs), which dominate the herbivore-induced bouquet of N. attenuata. Light deprivation strongly suppressed terpenoid emissions while enhancing GLV emissions, albeit with a time lag. Silencing the expression of photoreceptor genes did not alter terpenoid emission rhythms, but silencing expression of the phytochrome gene, NaPhyB1, disordered the emission of the GLV (Z)-3-hexenyl acetate. External abscisic acid (ABA) treatments increased stomatal resistance, but did not truncate the emission of terpenoid volatiles (recovered in the headspace). However, ABA treatment enhanced GLV emissions and leaf internal pools (recovered from tissue), and reduced internal linalool pools. In contrast to the pattern of diurnal terpenoid emissions and nocturnal GLV emissions, transcripts of herbivore-induced plant volatile (HIPV) biosynthetic genes peaked during the day. The promotor regions of these genes were populated with various cis-acting regulatory elements involved in light-, stress-, phytohormone- and circadian regulation. CONCLUSIONS This research provides insights into the complexity of the mechanisms involved in the regulation of HIPV bouquets, a mechanistic complexity which rivals the functional complexity of HIPVs, which includes repelling herbivores, calling for body guards, and attracting pollinators.
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Affiliation(s)
- Jun He
- National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Xiema Street, Beibei, Chongqing, 400712, People's Republic of China.
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745, Jena, Germany.
| | - Rayko Halitschke
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745, Jena, Germany
| | - Meredith C Schuman
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745, Jena, Germany
- Current address: Departments of Geography and Chemistry, University of Zurich, 8057, Zürich, Switzerland
| | - Ian T Baldwin
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745, Jena, Germany.
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23
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Wang Y, Du F, Wang J, Li Y, Zhang Y, Zhao X, Zheng T, Li Z, Xu J, Wang W, Fu B. Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice. Int J Mol Sci 2021; 22:ijms22179107. [PMID: 34502018 PMCID: PMC8430958 DOI: 10.3390/ijms22179107] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Revised: 08/18/2021] [Accepted: 08/20/2021] [Indexed: 11/23/2022] Open
Abstract
Gibberellin 2-oxidase (GA2ox) plays an important role in the GA catabolic pathway and the molecular function of the OsGA2ox genes in plant abiotic stress tolerance remains largely unknown. In this study, we functionally characterized the rice gibberellin 2-oxidase 8 (OsGA2ox8) gene. The OsGA2ox8 protein was localized in the nucleus, cell membrane, and cytoplasm, and was induced in response to various abiotic stresses and phytohormones. The overexpression of OsGA2ox8 significantly enhanced the osmotic stress tolerance of transgenic rice plants by increasing the number of osmotic regulators and antioxidants. OsGA2ox8 was differentially expressed in the shoots and roots to cope with osmotic stress. The plants overexpressing OsGA2ox8 showed reduced lengths of shoots and roots at the seedling stage, but no difference in plant height at the heading stage was observed, which may be due to the interaction of OsGA2ox8 and OsGA20ox1, implying a complex feedback regulation between GA biosynthesis and metabolism in rice. Importantly, OsGA2ox8 was able to indirectly regulate several genes associated with the anthocyanin and flavonoid biosynthetic pathway and the jasmonic acid (JA) and abscisic acid (ABA) biosynthetic pathway, and overexpression of OsGA2ox8 activated JA signal transduction by inhibiting the expression of jasmonate ZIM domain-containing proteins. These results provide a basis for a future understanding of the networks and respective phenotypic effects associated with OsGA2ox8.
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Affiliation(s)
- Yinxiao Wang
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, South Zhong-Guan-Cun Street 12, Beijing 100081, China; (Y.W.); (F.D.); (J.W.); (Y.L.); (Y.Z.); (X.Z.); (T.Z.); (Z.L.); (J.X.)
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, South Zhong-Guan-Cun Street 12, Beijing 100081, China
| | - Fengping Du
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, South Zhong-Guan-Cun Street 12, Beijing 100081, China; (Y.W.); (F.D.); (J.W.); (Y.L.); (Y.Z.); (X.Z.); (T.Z.); (Z.L.); (J.X.)
- College of Life Sciences, Northwest A&F University, Xianyang 712100, China
| | - Juan Wang
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, South Zhong-Guan-Cun Street 12, Beijing 100081, China; (Y.W.); (F.D.); (J.W.); (Y.L.); (Y.Z.); (X.Z.); (T.Z.); (Z.L.); (J.X.)
| | - Yingbo Li
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, South Zhong-Guan-Cun Street 12, Beijing 100081, China; (Y.W.); (F.D.); (J.W.); (Y.L.); (Y.Z.); (X.Z.); (T.Z.); (Z.L.); (J.X.)
| | - Yue Zhang
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, South Zhong-Guan-Cun Street 12, Beijing 100081, China; (Y.W.); (F.D.); (J.W.); (Y.L.); (Y.Z.); (X.Z.); (T.Z.); (Z.L.); (J.X.)
| | - Xiuqin Zhao
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, South Zhong-Guan-Cun Street 12, Beijing 100081, China; (Y.W.); (F.D.); (J.W.); (Y.L.); (Y.Z.); (X.Z.); (T.Z.); (Z.L.); (J.X.)
| | - Tianqing Zheng
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, South Zhong-Guan-Cun Street 12, Beijing 100081, China; (Y.W.); (F.D.); (J.W.); (Y.L.); (Y.Z.); (X.Z.); (T.Z.); (Z.L.); (J.X.)
| | - Zhikang Li
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, South Zhong-Guan-Cun Street 12, Beijing 100081, China; (Y.W.); (F.D.); (J.W.); (Y.L.); (Y.Z.); (X.Z.); (T.Z.); (Z.L.); (J.X.)
- College of Agronomy, Anhui Agricultural University, Hefei 230036, China
| | - Jianlong Xu
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, South Zhong-Guan-Cun Street 12, Beijing 100081, China; (Y.W.); (F.D.); (J.W.); (Y.L.); (Y.Z.); (X.Z.); (T.Z.); (Z.L.); (J.X.)
| | - Wensheng Wang
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, South Zhong-Guan-Cun Street 12, Beijing 100081, China; (Y.W.); (F.D.); (J.W.); (Y.L.); (Y.Z.); (X.Z.); (T.Z.); (Z.L.); (J.X.)
- College of Agronomy, Anhui Agricultural University, Hefei 230036, China
- Correspondence: (W.W.); (B.F.); Tel.: +86-10-82106698 (W.W. & B.F.); Fax: +86-10-68918559 (W.W. & B.F.)
| | - Binying Fu
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, South Zhong-Guan-Cun Street 12, Beijing 100081, China; (Y.W.); (F.D.); (J.W.); (Y.L.); (Y.Z.); (X.Z.); (T.Z.); (Z.L.); (J.X.)
- Correspondence: (W.W.); (B.F.); Tel.: +86-10-82106698 (W.W. & B.F.); Fax: +86-10-68918559 (W.W. & B.F.)
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Cheng J, Wei F, Zhang M, Li N, Song T, Wang Y, Chen D, Xiang J, Zhang X. Identification of a 193 bp promoter region of TaNRX1-D gene from common wheat that contributes to osmotic or ABA stress inducibility in transgenic Arabidopsis. Genes Genomics 2021; 43:1035-1048. [PMID: 34143419 DOI: 10.1007/s13258-021-01115-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Accepted: 05/18/2021] [Indexed: 01/12/2023]
Abstract
BACKGROUND Cloning and characterizing the drought-inducible promoters is essential for their use in crop resistance's genetic improvement. Previous studies have shown that the TaNRX1-D gene participates in regulating the response of wheat to drought stress. However, its promoter has not yet been identified. OBJECTIVE In this study, we aimed to characterize the promoter of the TaNRX1-D gene. METHODS The promoter of TaNRX1-D (named P0, 2081 bp) was isolated from common wheat with several cis-acting elements that regulate in response to abiotic stresses and some core cis-acting elements. Functional verification of the promoter, eight 5'-deletion fragments of TaNRX1-D promoter, was fused to the β-glucuronidase (GUS) gene P0::GUS ~ P7::GUS and transformed into Arabidopsis, respectively. Agrobacterium-mediated GUS transient assay the P6a and P6b promoter regions in tobacco leaves under normal, osmotic or ABA stress. RESULTS Activity analysis of the full-length promoter (P0) showed that the intensity of stronger β-glucuronidase (GUS) staining in the roots and leaves was obtained during the growth of transgenic Arabidopsis. P0::GUS displayed the GUS activity was much higher in the roots and leaves than in other parts of the transgenic plant under normal conditions, which was similarly within wheat. Analysis of the 5'-deletion fragments revealed that P0::GUS ~ P6::GUS responded well upon exposure to osmotic (polyethylene glycol-6000, PEG6000) and abscisic acid (ABA) stress treatments and expressed significantly higher GUS activity than the CaMV35S promoter (35S::GUS), while P7::GUS did not. GUS transient assay in tobacco leaves showed that the GUS activities of P6a and P6b were lower than P6 in the PEG6000 and ABA stresses. CONCLUSION The 193 bp (P6) segment was considered the core region of TaNRX1-D responding to PEG6000 or ABA treatment. GUS activity assay in transgenic Arabidopsis showed that this segment was sufficient for the PEG6000 or ABA stress response. The identified 193 bp promoter of TaNRX1-D in this study will help breed osmotic or ABA tolerant crops. The 36 bp segment between P6 and P6b (-193 to -157 bp) was considered the critical sequence for the TaNRX1-D gene responding to PEG6000 or ABA treatment.
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Affiliation(s)
- Jie Cheng
- College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Fan Wei
- College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Mingfei Zhang
- Academy of Agricultural Sciences/Key Laboratory of Agro-Ecological Protection & Exploitation and Utilization of Animal and Plant Resources in Eastern Inner Mongolia, Chi Feng University, Chifeng, China
| | - Nan Li
- Academy of Agricultural Sciences/Key Laboratory of Agro-Ecological Protection & Exploitation and Utilization of Animal and Plant Resources in Eastern Inner Mongolia, Chi Feng University, Chifeng, China
| | - Tianqi Song
- College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Yong Wang
- College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Dongsheng Chen
- The Crop Research Institute, Ningxia Academy of Agriculture and Forestry Science, Yinchuan, 750002, Ningxia, China
| | - Jishan Xiang
- Academy of Agricultural Sciences/Key Laboratory of Agro-Ecological Protection & Exploitation and Utilization of Animal and Plant Resources in Eastern Inner Mongolia, Chi Feng University, Chifeng, China.
| | - Xiaoke Zhang
- College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
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Yuan J, Shen C, Chen B, Shen A, Li X. Genome-Wide Characterization and Expression Analysis of CAMTA Gene Family Under Salt Stress in Cucurbita moschata and Cucurbita maxima. Front Genet 2021; 12:647339. [PMID: 34220934 PMCID: PMC8249228 DOI: 10.3389/fgene.2021.647339] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Accepted: 05/17/2021] [Indexed: 11/17/2022] Open
Abstract
Cucurbita Linn. vegetables have a long history of cultivation and have been cultivated all over the world. With the increasing area of saline–alkali soil, Cucurbita Linn. is affected by salt stress, and calmodulin-binding transcription activator (CAMTA) is known for its important biological functions. Although the CAMTA gene family has been identified in several species, there is no comprehensive analysis on Cucurbita species. In this study, we analyzed the genome of Cucurbita maxima and Cucurbita moschata. Five C. moschata calmodulin-binding transcription activators (CmoCAMTAs) and six C. maxima calmodulin-binding transcription activators (CmaCAMTAs) were identified, and they were divided into three subfamilies (Subfamilies I, II, and III) based on the sequence identity of amino acids. CAMTAs from the same subfamily usually have similar exon–intron distribution and conserved domains (CG-1, TIG, IQ, and Ank_2). Chromosome localization analysis showed that CmoCAMTAs and CmaCAMTAs were unevenly distributed across four and five out of 21 chromosomes, respectively. There were a total of three duplicate gene pairs, and all of which had experienced segmental duplication events. The transcriptional profiles of CmoCAMTAs and CmaCAMTAs in roots, stems, leaves, and fruits showed that these CAMTAs have tissue specificity. Cis-acting elements analysis showed that most of CmoCAMTAs and CmaCAMTAs responded to salt stress. By analyzing the transcriptional profiles of CmoCAMTAs and CmaCAMTAs under salt stress, it was shown that both C. moschata and C. maxima shared similarities against salt tolerance and that it is likely to contribute to the development of these species. Finally, quantitative real-time polymerase chain reaction (qRT-PCR) further demonstrated the key role of CmoCAMTAs and CmaCAMTAs under salt stress. This study provided a theoretical basis for studying the function and mechanism of CAMTAs in Cucurbita Linn.
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Affiliation(s)
- Jingping Yuan
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China.,Henan Engineering Research Center of the Development and Utilization of Characteristic Horticultural Plants, Xinxiang, China
| | - Changwei Shen
- School of Resources and Environmental Sciences, Henan Institute of Science and Technology, Xinxiang, China
| | - Bihua Chen
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China.,Henan Engineering Research Center of the Development and Utilization of Characteristic Horticultural Plants, Xinxiang, China
| | - Aimin Shen
- Zhengzhou Vegetable Research Institute (ZVRI), Zhengzhou, China
| | - Xinzheng Li
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China.,Henan Engineering Research Center of the Development and Utilization of Characteristic Horticultural Plants, Xinxiang, China
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26
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Raina M, Kumar A, Yadav N, Kumari S, Yusuf MA, Mustafiz A, Kumar D. StCaM2, a calcium binding protein, alleviates negative effects of salinity and drought stress in tobacco. PLANT MOLECULAR BIOLOGY 2021; 106:85-108. [PMID: 33629224 DOI: 10.1007/s11103-021-01131-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 02/09/2021] [Indexed: 05/20/2023]
Abstract
KEY MESSAGE Overexpression of StCaM2 in tobacco promotes plant growth and confers increased salinity and drought tolerance by enhancing the photosynthetic efficiency, ROS scavenging, and recovery from membrane injury. Calmodulins (CaMs) are important Ca2+ sensors that interact with effector proteins and drive a network of signal transduction pathways involved in regulating the growth and developmental pattern of plants under stress. Herein, using in silico analysis, we identified 17 CaM isoforms (StCaM) in potato. Expression profiling revealed different temporal and spatial expression patterns of these genes, which were modulated under abiotic stress. Among the identified StCaM genes, StCaM2 was found to have the largest number of abiotic stress responsive promoter elements. In addition, StCaM2 was upregulated in response to some of the selected abiotic stress in potato tissues. Overexpression of StCaM2 in transgenic tobacco plants enhanced their tolerance to salinity and drought stress. Accumulation of reactive oxygen species was remarkably decreased in transgenic lines compared to that in wild type plants. Chlorophyll a fluorescence analysis suggested better performance of photosystem II in transgenic plants under stress compared to that in wild type plants. The increase in salinity stress tolerance in StCaM2-overexpressing plants was also associated with a favorable K+/Na+ ratio. The enhanced tolerance to abiotic stresses correlated with the increase in the activities of anti-oxidative enzymes in transgenic tobacco plants. Overall, our results suggest that StCaM2 can be a novel candidate for conferring salt and drought tolerance in plants.
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Affiliation(s)
- Meenakshi Raina
- Department of Botany, Central University of Jammu, Rahya-Suchani (Bagla), Dist- Samba, Jammu and Kashmir, 181143, India
| | - Ashish Kumar
- Plant Molecular Biology Laboratory, Faculty of Life Sciences and Biotechnology, South Asian University, Akbar Bhawan, Chanakyapuri, New Delhi, 110021, India
| | - Nikita Yadav
- Plant Molecular Biology Laboratory, Faculty of Life Sciences and Biotechnology, South Asian University, Akbar Bhawan, Chanakyapuri, New Delhi, 110021, India
| | - Sumita Kumari
- Sher-e-Kashmir University of Agricultural Sciences and Technology of Jammu, Jammu and Kashmir, India
| | - Mohd Aslam Yusuf
- Department of Bioengineering, Integral University, Dasauli, Kursi Road, Lucknow, 226026, India
| | - Ananda Mustafiz
- Plant Molecular Biology Laboratory, Faculty of Life Sciences and Biotechnology, South Asian University, Akbar Bhawan, Chanakyapuri, New Delhi, 110021, India.
| | - Deepak Kumar
- Department of Botany, Central University of Jammu, Rahya-Suchani (Bagla), Dist- Samba, Jammu and Kashmir, 181143, India.
- Department of Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India.
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Barajas-Lopez JDD, Tiwari A, Zarza X, Shaw MW, Pascual JS, Punkkinen M, Bakowska JC, Munnik T, Fujii H. EARLY RESPONSE TO DEHYDRATION 7 Remodels Cell Membrane Lipid Composition during Cold Stress in Arabidopsis. PLANT & CELL PHYSIOLOGY 2021; 62:80-91. [PMID: 33165601 DOI: 10.1093/pcp/pcaa139] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2019] [Accepted: 10/24/2020] [Indexed: 05/12/2023]
Abstract
Plants adjust to unfavorable conditions by altering physiological activities, such as gene expression. Although previous studies have identified multiple stress-induced genes, the function of many genes during the stress responses remains unclear. Expression of ERD7 (EARLY RESPONSE TO DEHYDRATION 7) is induced in response to dehydration. Here, we show that ERD7 plays essential roles in both plant stress responses and development. In Arabidopsis, ERD7 protein accumulated under various stress conditions, including exposure to low temperature. A triple mutant of Arabidopsis lacking ERD7 and two closely related homologs had an embryonic lethal phenotype, whereas a mutant lacking the two homologs and one ERD7 allele had relatively round leaves, indicating that the ERD7 gene family has essential roles in development. Moreover, the importance of the ERD7 family in stress responses was evidenced by the susceptibility of the mutant lines to cold stress. ERD7 protein was found to bind to several, but not all, negatively charged phospholipids and was associated with membranes. Lipid components and cold-induced reduction in PIP2 in the mutant line were altered relative to wild type. Furthermore, membranes from the mutant line had reduced fluidity. Taken together, ERD7 and its homologs are important for plant stress responses and development and associated with the modification in membrane lipid composition.
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Affiliation(s)
| | - Arjun Tiwari
- Molecular Plant Biology Unit, Department of Biochemistry, University of Turku, Turku 20014, Finland
| | - Xavier Zarza
- Section Plant Cell Biology, Swammerdam Institute for Life Sciences (SILS), University of Amsterdam, Science Park 904, Amsterdam, XH 1098, Netherlands
| | - Molly W Shaw
- Department of Hematology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA
| | - Jes S Pascual
- Molecular Plant Biology Unit, Department of Biochemistry, University of Turku, Turku 20014, Finland
| | - Matleena Punkkinen
- Molecular Plant Biology Unit, Department of Biochemistry, University of Turku, Turku 20014, Finland
| | - Joanna C Bakowska
- Department of Molecular Pharmacology and Therapeutics, Stritch School of Medicine, Loyola University Chicago, Maywod, IL 60153, USA
| | - Teun Munnik
- Section Plant Cell Biology, Swammerdam Institute for Life Sciences (SILS), University of Amsterdam, Science Park 904, Amsterdam, XH 1098, Netherlands
| | - Hiroaki Fujii
- Molecular Plant Biology Unit, Department of Biochemistry, University of Turku, Turku 20014, Finland
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Xiong T, Tan Q, Li S, Mazars C, Galaud JP, Zhu X. Interactions between calcium and ABA signaling pathways in the regulation of fruit ripening. JOURNAL OF PLANT PHYSIOLOGY 2021; 256:153309. [PMID: 33197829 DOI: 10.1016/j.jplph.2020.153309] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 10/21/2020] [Accepted: 10/23/2020] [Indexed: 05/18/2023]
Abstract
Fruit ripening and senescence are finely controlled by plant hormones such as ethylene and abscisic acid (ABA) but also by calcium ions and by calcium-dependent signaling pathways. Although there are extensive data supporting an interaction between ethylene and calcium in fruit ripening, the regulatory mechanisms resulting from the interaction between ABA and calcium have not yet been fully clarified. In this article, we have reviewed the full roles of calcium and its sensors (CaM, CMLs, CDPKs, CBLs) as well as ABA and the interactions between the two signaling pathways in the regulation of stress responses and in fruit ripening. To illustrate the possible interaction between calcium sensors and ABA signaling components in the control of fruit ripening, we propose an interaction model between the calcium and ABA signaling pathways.
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Affiliation(s)
- Tiantian Xiong
- Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Science, South China Normal University, Guangzhou 510631, China
| | - Qinqin Tan
- Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables/Engineering Research Center for Postharvest Technology of Horticultural Crops in South China, Ministry of Education, College of Horticulture, South China Agricultural University, Guangzhou 510642, China
| | - Shaoshan Li
- Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Science, South China Normal University, Guangzhou 510631, China
| | - Chiristian Mazars
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24, chemin de Borde-Rouge, Auzeville, 31320, Castanet-Tolosan, France
| | - Jean-Philippe Galaud
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24, chemin de Borde-Rouge, Auzeville, 31320, Castanet-Tolosan, France.
| | - Xiaoyang Zhu
- Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables/Engineering Research Center for Postharvest Technology of Horticultural Crops in South China, Ministry of Education, College of Horticulture, South China Agricultural University, Guangzhou 510642, China.
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Jiang W, Zhou S, Huang H, Song H, Zhang Q, Zhao Y. MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice. PLANT MOLECULAR BIOLOGY 2020; 104:499-511. [PMID: 32918256 DOI: 10.1007/s11103-020-01053-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2020] [Accepted: 08/13/2020] [Indexed: 06/11/2023]
Abstract
Rice MERISTEM ACTIVITYLESS (MAL), a RING-H2 finger domain (RFD)-containing gene, regulates meristem cell viability after the initiation of root primordia mediated by cytokinin signaling. Genes in the RING-H2 finger domain (RFD) family play various roles during plant development and in biotic/abiotic stress responses. Rice gene MERISTEM ACTIVITYLESS (MAL), being contained in the RING-H2 finger domain (RFD), is characterized by a transmembrane domain at the N-terminal and a C3H2C3 zinc finger domain at the C-terminal. To elucidate the physiological and molecular functions of MAL, we generated MAL knockdown transgenic plants by RNA interference. MAL RNA-interfered (MRi) transgenic plants exhibited a phenotype with shorter crown root length and lower crown root number, accompanied by a lower cell division rate. The low division rate was observed in the root meristem exactly where MAL was expressed. Furthermore, transcriptome data revealed that cell wall macromolecule metabolism-related genes and redox-related genes were enriched in MAL RNAi lines. Most of these differentially expressed genes (DEGs) were induced by exogenous cytokinin. Hence, we conclude that MAL, as a novel regulatory factor, plays a major role in maintaining cell viability in the meristem after the initiation of root primordial formation, mediated by cytokinin signaling and reactive oxygen species (ROS).
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Affiliation(s)
- Wei Jiang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Shaoli Zhou
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Honglin Huang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Huazhi Song
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Qinglu Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yu Zhao
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.
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Bárzana G, Carvajal M. Genetic regulation of water and nutrient transport in water stress tolerance in roots. J Biotechnol 2020; 324:134-142. [PMID: 33038476 DOI: 10.1016/j.jbiotec.2020.10.003] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Revised: 07/29/2020] [Accepted: 10/05/2020] [Indexed: 01/11/2023]
Abstract
Drought stress is one of the major abiotic factors affecting the growth and development of crops. The primary effect of drought is the alteration of water and nutrient uptake and transport by roots, related essentially with aquaporins and ion transporters of the plasma membrane. Therefore, the efficiency of water and nutrient transport across cell layers is a main factor in tolerance mechanisms. The regulation of this transport under water stress - in relation to the differing degrees of tolerance of crops and the effect of arbuscular mycorrhizae, together with signaling mechanisms - is reviewed here. Three different phases in the response to stress (immediate, short-term and long-term), involving different signals and levels of gene regulation, are highlighted.
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Affiliation(s)
- Gloria Bárzana
- Aquaporins Group, Centro de Edafologia y Biologia Aplicada del Segura, CEBAS-CSIC, Campus Universitario de Espinardo - 25, E-30100, Murcia, Spain
| | - Micaela Carvajal
- Aquaporins Group, Centro de Edafologia y Biologia Aplicada del Segura, CEBAS-CSIC, Campus Universitario de Espinardo - 25, E-30100, Murcia, Spain.
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Yang F, Dong FS, Hu FH, Liu YW, Chai JF, Zhao H, Lv MY, Zhou S. Genome-wide identification and expression analysis of the calmodulin-binding transcription activator (CAMTA) gene family in wheat (Triticum aestivum L.). BMC Genet 2020; 21:105. [PMID: 32928120 PMCID: PMC7491182 DOI: 10.1186/s12863-020-00916-5] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Accepted: 09/06/2020] [Indexed: 12/21/2022] Open
Abstract
Background Plant calmodulin-binding transcription activator (CAMTA) proteins play important roles in hormone signal transduction, developmental regulation, and environmental stress tolerance. However, in wheat, the CAMTA gene family has not been systematically characterized. Results In this work, 15 wheat CAMTA genes were identified using a genome-wide search method. Their chromosome location, physicochemical properties, subcellular localization, gene structure, protein domain, and promoter cis-elements were systematically analyzed. Phylogenetic analysis classified the TaCAMTA genes into three groups (groups A, B, and C), numbered 7, 6, and 2, respectively. The results showed that most TaCAMTA genes contained stress-related cis-elements. Finally, to obtain tissue-specific and stress-responsive candidates, the expression profiles of the TaCAMTAs in various tissues and under biotic and abiotic stresses were investigated. Tissue-specific expression analysis showed that all of the 15 TaCAMTA genes were expressed in multiple tissues with different expression levels, as well as under abiotic stress, the expressions of each TaCAMTA gene could respond to at least one abiotic stress. It also found that 584 genes in wheat genome were predicted to be potential target genes by CAMTA, demonstrating that CAMTA can be widely involved in plant development and growth, as well as coping with stresses. Conclusions This work systematically identified the CAMTA gene family in wheat at the whole-genome-wide level, providing important candidates for further functional analysis in developmental regulation and the stress response in wheat.
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Affiliation(s)
- Fan Yang
- Institute of Genetics and Physiology, Hebei Academy of Agriculture and Forestry Sciences/Plant Genetic Engineering Center of Hebei Province, Shijiazhuang, 050051, People's Republic of China
| | - Fu-Shuang Dong
- Institute of Genetics and Physiology, Hebei Academy of Agriculture and Forestry Sciences/Plant Genetic Engineering Center of Hebei Province, Shijiazhuang, 050051, People's Republic of China
| | - Fang-Hui Hu
- Agriculture and Rural Bureau of Nanhe County, Xingtai, 054400, People's Republic of China
| | - Yong-Wei Liu
- Institute of Genetics and Physiology, Hebei Academy of Agriculture and Forestry Sciences/Plant Genetic Engineering Center of Hebei Province, Shijiazhuang, 050051, People's Republic of China
| | - Jian-Fang Chai
- Institute of Genetics and Physiology, Hebei Academy of Agriculture and Forestry Sciences/Plant Genetic Engineering Center of Hebei Province, Shijiazhuang, 050051, People's Republic of China
| | - He Zhao
- Institute of Genetics and Physiology, Hebei Academy of Agriculture and Forestry Sciences/Plant Genetic Engineering Center of Hebei Province, Shijiazhuang, 050051, People's Republic of China
| | - Meng-Yu Lv
- Institute of Genetics and Physiology, Hebei Academy of Agriculture and Forestry Sciences/Plant Genetic Engineering Center of Hebei Province, Shijiazhuang, 050051, People's Republic of China
| | - Shuo Zhou
- Institute of Genetics and Physiology, Hebei Academy of Agriculture and Forestry Sciences/Plant Genetic Engineering Center of Hebei Province, Shijiazhuang, 050051, People's Republic of China.
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de Vries J, de Vries S, Curtis BA, Zhou H, Penny S, Feussner K, Pinto DM, Steinert M, Cohen AM, von Schwartzenberg K, Archibald JM. Heat stress response in the closest algal relatives of land plants reveals conserved stress signaling circuits. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 103:1025-1048. [PMID: 32333477 DOI: 10.1111/tpj.14782] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 03/28/2020] [Accepted: 04/08/2020] [Indexed: 05/20/2023]
Abstract
All land plants (embryophytes) share a common ancestor that likely evolved from a filamentous freshwater alga. Elucidating the transition from algae to embryophytes - and the eventual conquering of Earth's surface - is one of the most fundamental questions in plant evolutionary biology. Here, we investigated one of the organismal properties that might have enabled this transition: resistance to drastic temperature shifts. We explored the effect of heat stress in Mougeotia and Spirogyra, two representatives of Zygnematophyceae - the closest known algal sister lineage to land plants. Heat stress induced pronounced phenotypic alterations in their plastids, and high-performance liquid chromatography-tandem mass spectroscopy-based profiling of 565 transitions for the analysis of main central metabolites revealed significant shifts in 43 compounds. We also analyzed the global differential gene expression responses triggered by heat, generating 92.8 Gbp of sequence data and assembling a combined set of 8905 well-expressed genes. Each organism had its own distinct gene expression profile; less than one-half of their shared genes showed concordant gene expression trends. We nevertheless detected common signature responses to heat such as elevated transcript levels for molecular chaperones, thylakoid components, and - corroborating our metabolomic data - amino acid metabolism. We also uncovered the heat-stress responsiveness of genes for phosphorelay-based signal transduction that links environmental cues, calcium signatures and plastid biology. Our data allow us to infer the molecular heat stress response that the earliest land plants might have used when facing the rapidly shifting temperature conditions of the terrestrial habitat.
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Affiliation(s)
- Jan de Vries
- Department of Biochemistry and Molecular Biology, Dalhousie University, Sir Charles Tupper Medical Building, 5850 College Street, Halifax, NS, B3H 4R2, Canada
- Institute of Microbiology, Technische Universität Braunschweig, Spielmannstr. 7, 38106, Braunschweig, Germany
- Department of Applied Bioinformatics, Institute for Microbiology and Genetics, University of Goettingen, Goldschmidtstr. 1, 37077, Goettingen, Germany
- Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, 37077, Goettingen, Germany
| | - Sophie de Vries
- Department of Biochemistry and Molecular Biology, Dalhousie University, Sir Charles Tupper Medical Building, 5850 College Street, Halifax, NS, B3H 4R2, Canada
- Institute of Population Genetics, Heinrich-Heine University Duesseldorf, Universitätsstr. 1, 40225, Duesseldorf, Germany
| | - Bruce A Curtis
- Department of Biochemistry and Molecular Biology, Dalhousie University, Sir Charles Tupper Medical Building, 5850 College Street, Halifax, NS, B3H 4R2, Canada
| | - Hong Zhou
- Microalgae and Zygnematophyceae Collection Hamburg (MZCH) and Aquatic Ecophysiology and Phycology, Institute of Plant Science and Microbiology, Universität Hamburg, 22609, Hamburg, Germany
| | - Susanne Penny
- National Research Council, Human Health Therapeutics, 1411 Oxford Street, Halifax, NS, B3H 3Z1, Canada
| | - Kirstin Feussner
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, Justus-von-Liebig-Weg 11, 37077, Goettingen, Germany
- Service Unit for Metabolomics and Lipidomics, Goettingen Center for Molecular Biosciences (GZMB), 37077, Goettingen, Germany
| | - Devanand M Pinto
- National Research Council, Human Health Therapeutics, 1411 Oxford Street, Halifax, NS, B3H 3Z1, Canada
- Department of Chemistry, Dalhousie University, 6274 Coburg Rd, Halifax, NS, B3H 4R2, Canada
| | - Michael Steinert
- Institute of Microbiology, Technische Universität Braunschweig, Spielmannstr. 7, 38106, Braunschweig, Germany
| | - Alejandro M Cohen
- Biological Spectrometry Core Facility, Life Sciences Research Institute, Dalhousie University, Halifax, NS, B3H 4R2, Canada
| | - Klaus von Schwartzenberg
- Microalgae and Zygnematophyceae Collection Hamburg (MZCH) and Aquatic Ecophysiology and Phycology, Institute of Plant Science and Microbiology, Universität Hamburg, 22609, Hamburg, Germany
| | - John M Archibald
- Department of Biochemistry and Molecular Biology, Dalhousie University, Sir Charles Tupper Medical Building, 5850 College Street, Halifax, NS, B3H 4R2, Canada
- Canadian Institute for Advanced Research, 661 University Ave, Suite 505, Toronto, ON, M5G 1M1, Canada
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Xiong J, Liu L, Ma X, Li F, Tang C, Li Z, Lü B, Zhou T, Lian X, Chang Y, Tang M, Xie S, Lu X. Characterization of PtAOS1 Promoter and Three Novel Interacting Proteins Responding to Drought in Poncirus trifoliata. Int J Mol Sci 2020; 21:ijms21134705. [PMID: 32630273 PMCID: PMC7370134 DOI: 10.3390/ijms21134705] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 06/27/2020] [Accepted: 06/29/2020] [Indexed: 11/16/2022] Open
Abstract
Jasmonic acid (JA) plays a crucial role in various biological processes including development, signal transduction and stress response. Allene oxide synthase (AOS) catalyzing (13S)-hydroperoxyoctadecatrienoic acid (13-HPOT) to an unstable allene oxide is involved in the first step of JA biosynthesis. Here, we isolated the PtAOS1 gene and its promoter from trifoliate orange (Poncirus trifoliata). PtAOS1 contains a putative chloroplast targeting sequence in N-terminal and shows relative to pistachio (Pistacia vera) AOS. A number of stress-, light- and hormone-related cis-elements were found in the PtAOS1 promoter which may be responsible for the up-regulation of PtAOS1 under drought and JA treatments. Transient expression in tobacco (Nicotiana benthamiana) demonstrated that the P-532 (-532 to +1) fragment conferring drive activity was a core region in the PtAOS1 promoter. Using yeast one-hybrid, three novel proteins, PtDUF886, PtDUF1685 and PtRAP2.4, binding to P-532 were identified. The dual luciferase assay in tobacco illustrated that all three transcription factors could enhance PtAOS1 promoter activity. Genes PtDUF1685 and PtRAP2.4 shared an expression pattern which was induced significantly by drought stress. These findings should be available evidence for trifoliate orange responding to drought through JA modulation.
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Affiliation(s)
- Jiang Xiong
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Lian Liu
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Xiaochuan Ma
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Feifei Li
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
- Institute of Horticulture, Hunan Academy of Agricultural Science, Changsha 410125, China
| | - Chaolan Tang
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Zehang Li
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Biwen Lü
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Tie Zhou
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Xuefei Lian
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Yuanyuan Chang
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Mengjing Tang
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Shenxi Xie
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
| | - Xiaopeng Lu
- Department of Horticulture, College of Horticulture, Hunan Agricultural University, Changsha 410128, China; (J.X.); (L.L.); (X.M.); (F.L.); (C.T.); (Z.L.); (B.L.); (T.Z.); (X.L.); (Y.C.); (M.T.); (S.X.)
- National Centre for Citrus Improvement, Changsha 410128, China
- Correspondence: ; Tel./Fax: +86-0731-84618171
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Zhang L, Xie J, Wang L, Si L, Zheng S, Yang Y, Yang H, Tian S. Wheat TabZIP8, 9, 13 participate in ABA biosynthesis in NaCl-stressed roots regulated by TaCDPK9-1. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 151:650-658. [PMID: 32339912 DOI: 10.1016/j.plaphy.2020.03.039] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Revised: 03/26/2020] [Accepted: 03/26/2020] [Indexed: 05/02/2023]
Abstract
In plants, basic leucine zipper (bZIP) transcription factors (TFs) participate in various biological processes such as development and stress responses. But the molecular mechanism of wheat bZIP TFs modulating abscisic acid (ABA) biosynthesis is unknown. In this study, we demonstrated the expressions of three bZIP TF genes TabZIP8, 9, 13, were regulated by Triticum aestivum calcium (Ca2+)-dependent protein kinase 9-1 (TaCDPK9-1) and they took part in ABA biosynthesis in wheat roots under salt stress. We first isolated TabZIP8, 9, 13 and TaCDPK9-1 from wheat. TabZIP8, 9, 13 genes transcripts were strongly induced by salt stress, but salt-induced TabZIP8, 9, 13 transcriptions were drastically impaired by Ca2+ channel blocker LaCl3. TaCDPK9-1 kinase could interact with TabZIP8, 9, 13 TFs through yeast two-hybrid assay. Next, the expression levels of salt-induced wheat 9-cis-epoxycarotenoid dioxygenase1, 2 (TaNCED1,2) encoding a key enzyme controlling ABA production and salt-induced ABA content were found to be decreased under LaCl3 treatment, and yeast one-hybrid experiment revealed TabZIP8, 9, 13 could bind to the ABA-responsive elements (ABREs) and the promoter sequence of TaNCED2 gene. Together, our results suggest that salt stress-induced ABA accumulation is mediated by TabZIP8, 9, 13, which are adjusted by TaCDPK9-1 in wheat roots.
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Affiliation(s)
- Lina Zhang
- School of Life Science, Northwest Normal University, Lanzhou, 730070, China.
| | - Jiaqi Xie
- School of Life Science, Northwest Normal University, Lanzhou, 730070, China
| | - Liting Wang
- School of Life Science, Northwest Normal University, Lanzhou, 730070, China
| | - Lianbang Si
- School of Life Science, Northwest Normal University, Lanzhou, 730070, China
| | - Shen Zheng
- School of Life Science, Northwest Normal University, Lanzhou, 730070, China
| | - Yingli Yang
- School of Life Science, Northwest Normal University, Lanzhou, 730070, China
| | - Hong Yang
- School of Life Science, Northwest Normal University, Lanzhou, 730070, China
| | - Shengguo Tian
- School of Life Science, Northwest Normal University, Lanzhou, 730070, China
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Dubois M, Inzé D. Plant growth under suboptimal water conditions: early responses and methods to study them. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:1706-1722. [PMID: 31967643 DOI: 10.1093/jxb/eraa037] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Accepted: 01/20/2020] [Indexed: 05/03/2023]
Abstract
Drought stress forms a major environmental constraint during the life cycle of plants, often decreasing plant yield and in extreme cases threatening survival. The molecular and physiological responses induced by drought have been the topic of extensive research during the past decades. Because soil-based approaches to studying drought responses are often challenging due to low throughput and insufficient control of the conditions, osmotic stress assays in plates were developed to mimic drought. Addition of compounds such as polyethylene glycol, mannitol, sorbitol, or NaCl to controlled growth media has become increasingly popular since it offers the advantage of accurate control of stress level and onset. These osmotic stress assays enabled the discovery of very early stress responses, occurring within seconds or minutes following osmotic stress exposure. In this review, we construct a detailed timeline of early responses to osmotic stress, with a focus on how they initiate plant growth arrest. We further discuss the specific responses triggered by different types and severities of osmotic stress. Finally, we compare short-term plant responses under osmotic stress versus in-soil drought and discuss the advantages, disadvantages, and future of these plate-based proxies for drought.
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Affiliation(s)
- Marieke Dubois
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Dirk Inzé
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
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Response of Alfalfa (Medicago sativa L.) to Abrupt Chilling as Reflected by Changes in Freezing Tolerance and Soluble Sugars. AGRONOMY-BASEL 2020. [DOI: 10.3390/agronomy10020255] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Abrupt-chilling events threaten the survival of alfalfa plants, the ability to cope with such condition should be considered during cultivar selection in the production. To assess biochemical and molecular responses of alfalfa to abrupt chilling, the cultivars “WL440HQ” (WL) and “ZhaoDong” (ZD) were subjected to a five-phase experimental regime that included two abrupt-chilling events. The freezing tolerance of the crown was determined as the semi-lethal temperature (LT50) calculated from electrolyte leakage. Soluble sugar concentrations were quantified by ion chromatography. The mRNA transcript levels of four genes encoding enzymes (β-amylase, sucrose phosphate synthase, galactinol synthase, and stachyose synthase) involved in sugar metabolism and two cold-regulated genes (Cas15A and K3-dehydrin) were quantified using quantitative real-time PCR analysis. During the abrupt-chilling events, the LT50 decreased significantly in ZD but not in WL. The rapid response of ZD to abrupt chilling may have been due to the large increases in raffinose and stachyose concentrations, which were consistent with increased transcript levels of the galactinol synthase and stachyose synthase genes. Transcript levels of the cold-regulated genes Cas15A and K3-dehydrin were correlated with increased freezing tolerance under abrupt chilling. The results provide a reference for selection of appropriate cultivars to reduce the risk of crop damage in production areas where early autumn or late spring frosts are likely.
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Moroz N, Tanaka K. FlgII-28 Is a Major Flagellin-Derived Defense Elicitor in Potato. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2020; 33:247-255. [PMID: 31644369 DOI: 10.1094/mpmi-06-19-0164-r] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The first layer of plant immunity is deployed by recognition of pathogen-associated molecule patterns (PAMPs) and induction of early stress responses. Flagellin is the major protein component of the flagellum. Flagellin-derived peptide fragments such as Flg22, a short active peptide derived from the highly conserved part of the N-terminal region, are recognized as PAMPs by a specific perception system present in most higher plants. Some bacteria evade the plant recognition system by altering the Flg22 region in the flagellin. Instead, a small subset of plants (i.e., solanaceous plants) can sense these bacteria by recognizing a second region, termed FlgII-28. The function of FlgII-28 has been well-documented in tomato but not in potato plants. Here, we investigated the effect of FlgII-28 on several defense responses in potato. Cytosolic calcium (Ca2+) elevation is an early defense response upon pathogenic infection. We generated transgenic potato plants expressing aequorin, a nontoxic Ca2+-activated photoprotein. The results showed that FlgII-28 induced strong cytosolic Ca2+ elevation in a dose-dependent manner, whereas the response was attenuated when a Ca2+ channel blocker was added. In addition, the FlgII-28-triggered cytosolic Ca2+ elevation was shown to subsequently promote extracellular alkalinization, reactive oxygen species production, mitogen-activated protein kinase phosphorylation, and transcriptional reprogramming of defense-related genes in potato. Interestingly, all tested defense responses caused by FlgII-28 were significantly stronger than those caused by Flg22, suggesting that FlgII-28 acts as a primary flagellar PAMP to elicit multiple defense responses in potato.
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Affiliation(s)
- Natalia Moroz
- Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A
| | - Kiwamu Tanaka
- Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A
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Xu W, Tang W, Wang C, Ge L, Sun J, Qi X, He Z, Zhou Y, Chen J, Xu Z, Ma YZ, Chen M. SiMYB56 Confers Drought Stress Tolerance in Transgenic Rice by Regulating Lignin Biosynthesis and ABA Signaling Pathway. FRONTIERS IN PLANT SCIENCE 2020; 11:785. [PMID: 32625221 PMCID: PMC7314972 DOI: 10.3389/fpls.2020.00785] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Accepted: 05/18/2020] [Indexed: 05/19/2023]
Abstract
Foxtail millet (Setaria italica) originated in China and is generally cultivated in arid and barren soil. Through long-term harsh environmental selection, foxtail millet has acquired significant drought resistance. However, the molecular mechanism of foxtail millet drought resistance is still unknown. Here, we identified a drought-induced R2R3-MYB transcription factor SiMYB56 in foxtail millet. Overexpression of SiMYB56 significantly enhances tolerance to drought stress in transgenic rice plants at both the vegetative and the reproductive stage and has no adverse effect on its normal growth. Compared with wild-type controls, SiMYB56-overexpressing rice plants had lower MDA content and higher lignin content under drought conditions. Quantitative real-time PCR and Transcriptional activity assays demonstrated that SiMYB56 could activate expression of lignin biosynthesis genes under drought conditions. Also, we found that overexpression of SiMYB56 can led to ABA accumulation in the seeds transgenic rice plants. Further experiments showed that Overexpression of SiMYB56 can upregulate the expression of ABA synthesis and response related genes under drought conditions. In conclusion, SiMYB56 may enhance the drought resistance of transgenic rice plants by regulating lignin biosynthesis and ABA signaling pathway, making SiMYB56 a candidate gene for drought resistance improvement in gramineous crops.
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Affiliation(s)
- Weiya Xu
- National Key Facility for Crop Genetic Resources and Genetic Improvement, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Wensi Tang
- National Key Facility for Crop Genetic Resources and Genetic Improvement, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Chunxiao Wang
- National Key Facility for Crop Genetic Resources and Genetic Improvement, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Linhao Ge
- National Key Facility for Crop Genetic Resources and Genetic Improvement, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jianchang Sun
- Institute of Crop Sciences, Ningxia Academy of Agriculture and Forestry Sciences, Yongning, China
| | - Xin Qi
- National Key Facility for Crop Genetic Resources and Genetic Improvement, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Zhang He
- National Key Facility for Crop Genetic Resources and Genetic Improvement, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yongbin Zhou
- National Key Facility for Crop Genetic Resources and Genetic Improvement, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jun Chen
- National Key Facility for Crop Genetic Resources and Genetic Improvement, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Zhaoshi Xu
- National Key Facility for Crop Genetic Resources and Genetic Improvement, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - You-Zhi Ma
- National Key Facility for Crop Genetic Resources and Genetic Improvement, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
- *Correspondence: You-Zhi Ma,
| | - Ming Chen
- National Key Facility for Crop Genetic Resources and Genetic Improvement, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
- Ming Chen,
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Aliniaeifard S, Shomali A, Seifikalhor M, Lastochkina O. Calcium Signaling in Plants Under Drought. SALT AND DROUGHT STRESS TOLERANCE IN PLANTS 2020:259-298. [DOI: 10.1007/978-3-030-40277-8_10] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/23/2023]
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40
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Freitas EO, Melo BP, Lourenço-Tessutti IT, Arraes FBM, Amorim RM, Lisei-de-Sá ME, Costa JA, Leite AGB, Faheem M, Ferreira MA, Morgante CV, Fontes EPB, Grossi-de-Sa MF. Identification and characterization of the GmRD26 soybean promoter in response to abiotic stresses: potential tool for biotechnological application. BMC Biotechnol 2019; 19:79. [PMID: 31747926 PMCID: PMC6865010 DOI: 10.1186/s12896-019-0561-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Accepted: 09/13/2019] [Indexed: 12/20/2022] Open
Abstract
BACKGROUND Drought is one of the most harmful abiotic stresses for plants, leading to reduced productivity of several economically important crops and, consequently, considerable losses in the agricultural sector. When plants are exposed to stressful conditions, such as drought and high salinity, they modulate the expression of genes that lead to developmental, biochemical, and physiological changes, which help to overcome the deleterious effects of adverse circumstances. Thus, the search for new specific gene promoter sequences has proved to be a powerful biotechnological strategy to control the expression of key genes involved in water deprivation or multiple stress responses. RESULTS This study aimed to identify and characterize the GmRD26 promoter (pGmRD26), which is involved in the regulation of plant responses to drought stress. The expression profile of the GmRD26 gene was investigated by qRT-PCR under normal and stress conditions in Williams 82, BR16 and Embrapa48 soybean-cultivars. Our data confirm that GmRD26 is induced under water deficit with different induction folds between analyzed cultivars, which display different genetic background and physiological behaviour under drought. The characterization of the GmRD26 promoter was performed under simulated stress conditions with abscisic acid (ABA), polyethylene glycol (PEG) and drought (air dry) on A. thaliana plants containing the complete construct of pGmRD26::GUS (2.054 bp) and two promoter modules, pGmRD26A::GUS (909 pb) and pGmRD26B::GUS (435 bp), controlling the expression of the β-glucuronidase (uidA) gene. Analysis of GUS activity has demonstrated that pGmRD26 and pGmRD26A induce strong reporter gene expression, as the pAtRD29 positive control promoter under ABA and PEG treatment. CONCLUSIONS The full-length promoter pGmRD26 and the pGmRD26A module provides an improved uidA transcription capacity when compared with the other promoter module, especially in response to polyethylene glycol and drought treatments. These data indicate that pGmRD26A may become a promising biotechnological asset with potential use in the development of modified drought-tolerant plants or other plants designed for stress responses.
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Affiliation(s)
- Elinea O Freitas
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, Brazil
- Federal University of Brasília, Brasília, DF, Brazil
| | - Bruno P Melo
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, Brazil
- Federal University of Viçosa, Viçosa, MG, Brazil
| | | | - Fabrício B M Arraes
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, Brazil
- Federal University of Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Regina M Amorim
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, Brazil
| | - Maria E Lisei-de-Sá
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, Brazil
- Agricultural Research Company of Minas Gerais State, Uberaba, MG, Brazil
| | - Julia A Costa
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, Brazil
- Catholic University of Brasilia - Post-Graduation Program in Genomic Sciences and Biotechnology, Brasília, DF, Brazil
| | - Ana G B Leite
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, Brazil
- Federal University of Brasília, Brasília, DF, Brazil
| | - Muhammad Faheem
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, Brazil
- National University of Medical Sciences, Rawalpindi, Punjab, Pakistan
| | | | - Carolina V Morgante
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, Brazil
- Embrapa Semi-Arid, Petrolina, PE, Brazil
| | | | - Maria F Grossi-de-Sa
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, Brazil.
- Catholic University of Brasilia - Post-Graduation Program in Genomic Sciences and Biotechnology, Brasília, DF, Brazil.
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Arabidopsis NDL-AGB1 modules Play Role in Abiotic Stress and Hormonal Responses Along with Their Specific Functions. Int J Mol Sci 2019; 20:ijms20194736. [PMID: 31554237 PMCID: PMC6801982 DOI: 10.3390/ijms20194736] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2019] [Revised: 09/17/2019] [Accepted: 09/19/2019] [Indexed: 12/15/2022] Open
Abstract
Arabidopsis N-MYC Downregulated Like Proteins (NDLs) are interacting partners of G-Protein core components. Animal homologs of the gene family N-myc downstream regulated gene (NDRG) has been found to be induced during hypoxia, DNA damage, in presence of reducing agent, increased intracellular calcium level and in response to metal ions like nickel and cobalt, which indicates the involvement of the gene family during stress responses. ArabidopsisNDL gene family contains three homologs NDL1, NDL2 and NDL3 which share up to 75% identity at protein level. Previous studies on NDL proteins involved detailed characterization of the role of NDL1; roles of other two members were also established in root and shoot development using miRNA knockdown approach. Role of entire family in development has been established but specific functions of NDL2 and NDL3 if any are still unknown. Our in-silico analysis of NDLs promoters reveled that all three members share some common and some specific transcription factors (TFs) binding sites, hinting towards their common as well as specific functions. Based on promoter elements characteristics, present study was designed to carry out comparative analysis of the Arabidopsis NDL family during different stages of plant development, under various abiotic stresses and plant hormonal responses, in order to find out their specific and combined roles in plant growth and development. Developmental analysis using GUS fusion revealed specific localization/expression during different stages of development for all three family members. Stress analysis after treatment with various hormonal and abiotic stresses showed stress and tissue-specific differential expression patterns for all three NDL members. All three NDL members were collectively showed role in dehydration stress along with specific responses to various treatments. Their specific expression patterns were affected by presence of interacting partner the Arabidopsis heterotrimeric G-protein β subunit 1 (AGB1). The present study will improve our understanding of the possible molecular mechanisms of action of the independent NDL–AGB1 modules during stress and hormonal responses. These findings also suggest potential use of this knowledge for crop improvement.
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Neller KCM, Diaz CA, Platts AE, Hudak KA. De novo Assembly of the Pokeweed Genome Provides Insight Into Pokeweed Antiviral Protein (PAP) Gene Expression. FRONTIERS IN PLANT SCIENCE 2019; 10:1002. [PMID: 31447869 PMCID: PMC6691146 DOI: 10.3389/fpls.2019.01002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Accepted: 07/17/2019] [Indexed: 05/21/2023]
Abstract
Ribosome-inactivating proteins (RIPs) are RNA glycosidases thought to function in defense against pathogens. These enzymes remove purine bases from RNAs, including rRNA; the latter activity decreases protein synthesis in vitro, which is hypothesized to limit pathogen proliferation by causing host cell death. Pokeweed antiviral protein (PAP) is a RIP synthesized by the American pokeweed plant (Phytolacca americana). PAP inhibits virus infection when expressed in crop plants, yet little is known about the function of PAP in pokeweed due to a lack of genomic tools for this non-model species. In this work, we de novo assembled the pokeweed genome and annotated protein-coding genes. Sequencing comprised paired-end reads from a short-insert library of 83X coverage, and our draft assembly (N50 = 42.5 Kb) accounted for 74% of the measured pokeweed genome size of 1.3 Gb. We obtained 29,773 genes, 73% of which contained known protein domains, and identified several PAP isoforms. Within the gene models of each PAP isoform, a long 5' UTR intron was discovered, which was validated by RT-PCR and sequencing. Presence of the intron stimulated reporter gene expression in tobacco. To gain further understanding of PAP regulation, we complemented this genomic resource with expression profiles of pokeweed plants subjected to stress treatments [jasmonic acid (JA), salicylic acid, polyethylene glycol, and wounding]. Cluster analysis of the top differentially expressed genes indicated that some PAP isoforms shared expression patterns with genes involved in terpenoid biosynthesis, JA-mediated signaling, and metabolism of amino acids and carbohydrates. The newly sequenced promoters of all PAP isoforms contained cis-regulatory elements associated with diverse biotic and abiotic stresses. These elements mediated response to JA in tobacco, based on reporter constructs containing promoter truncations of PAP-I, the most abundant isoform. Taken together, this first genomic resource for the Phytolaccaceae plant family provides new insight into the regulation and function of PAP in pokeweed.
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Affiliation(s)
| | | | - Adrian E. Platts
- Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, United States
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Ohnishi Y, Kokubu I, Kinoshita T, Okamoto T. Sperm Entry into the Egg Cell Induces the Progression of Karyogamy in Rice Zygotes. PLANT & CELL PHYSIOLOGY 2019; 60:1656-1665. [PMID: 31076767 DOI: 10.1093/pcp/pcz077] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2018] [Accepted: 04/16/2019] [Indexed: 05/11/2023]
Abstract
Karyogamy is a prerequisite event for plant embryogenesis, in which dynamic changes in nuclear architecture and the establishment of appropriate gene expression patterns must occur. However, the precise role of the male and female gametes in the progression of karyogamy still remains elusive. Here, we show that the sperm cell possesses the unique property to drive steady and swift nuclear fusion. When we fertilized egg cells with sperm cells in vitro, the immediate fusion of the male and female nuclei in the zygote progressed. This rapid nuclear fusion did not occur when two egg cells were artificially fused. However, the nuclear fusion of two egg nuclei could be accelerated by additional sperm entry or the exogenous application of calcium, suggesting that possible increase of cytosolic Ca2+ level via sperm entry into the egg cell efficiently can facilitate karyogamy. In contrast to zygotes, the egg-egg fusion cells failed to proliferate beyond an early developmental stage. Our transcriptional analyses also revealed the rapid activation of zygotic genes in zygotes, whereas there was no expression in fused cells without the male contribution. Thus, the male sperm cell has the ability to cause immediate karyogamy and to establish appropriate gene expression patterns in the zygote.
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Affiliation(s)
- Yukinosuke Ohnishi
- Department of Biological Sciences, Tokyo Metropolitan University, Minami-osawa 1-1, Hachioji, Tokyo, Japan
- Kihara Institute for Biological Research, Yokohama City University, Maioka 641-12, Totsuka, Yokohama, Kanagawa, Japan
| | - Iwao Kokubu
- Department of Biological Sciences, Tokyo Metropolitan University, Minami-osawa 1-1, Hachioji, Tokyo, Japan
| | - Tetsu Kinoshita
- Kihara Institute for Biological Research, Yokohama City University, Maioka 641-12, Totsuka, Yokohama, Kanagawa, Japan
| | - Takashi Okamoto
- Department of Biological Sciences, Tokyo Metropolitan University, Minami-osawa 1-1, Hachioji, Tokyo, Japan
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Genome Wide Identification, Molecular Characterization, and Gene Expression Analyses of Grapevine NHX Antiporters Suggest Their Involvement in Growth, Ripening, Seed Dormancy, and Stress Response. Biochem Genet 2019; 58:102-128. [PMID: 31286319 DOI: 10.1007/s10528-019-09930-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2018] [Accepted: 06/27/2019] [Indexed: 01/23/2023]
Abstract
Plant NHX antiporters are critical for cellular pH, Na+, and K+ homeostasis and salt tolerance. Even though their genomic and functional studies have been conducted in many species, the grapevine NHX family has not been described yet. Our work highlights the presence of six VvNHX genes whose phylogenetic analysis revealed their classification in two distinct groups: group I vacuolar (VvNHX1-5) and group II endosomal (VvNHX6). Several cis-acting regulatory elements related to tissue-specific expression, transcription factor binding, abiotic/biotic stresses response, and light regulation elements were identified in their promoter. Expression profile analyses of VvNHX genes showed variable transcription within organs and tissues with diverse patterns according to biochemical, environmental, and biotic treatments. All VvNHXs are involved in berry growth, except VvNHX5 that seems to be rather implicated in seed maturation. VvNHX4 would be more involved in floral development, while VvNHX2 and 3 display redundant roles. QPCR expression analyses of VvNHX1 showed its induction by NaCl and KNO3 treatments, whereas VvNHX6 was induced by ABA application and strongly repressed by PEG treatment. VvNHX1 plays a crucial role in a bunch of grape developmental steps and adaptation responses through mechanisms of phyto-hormonal signaling. Overall, VvNHX family members could be valuable candidate genes for grapevine improvement.
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Ma Q, Zhou Q, Chen C, Cui Q, Zhao Y, Wang K, Arkorful E, Chen X, Sun K, Li X. Isolation and expression analysis of CsCML genes in response to abiotic stresses in the tea plant (Camellia sinensis). Sci Rep 2019; 9:8211. [PMID: 31160625 PMCID: PMC6547691 DOI: 10.1038/s41598-019-44681-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Accepted: 05/22/2019] [Indexed: 12/14/2022] Open
Abstract
Calmodulin-like (CML) proteins are a class of important Ca2+ sensors in plants, which play vital roles in regulating plant growth and development and response to abiotic stress. Tea plant (Camellia sinensis L.) is the most popular non-alcoholic economic beverage crop around the world. However, the potential functions of CMLs in either tea plants growth or in the response to environmental stresses are still unclear. In the present study, five CsCML genes (CsCML16, CsCML18-1, CsCML18-2, CsCML38, and CsCML42) were isolated from tea plant, and functionally characterized. The CsCML genes showed diverse expression patterns in leaves, roots, old stems, immature stems and flowers of tea plants. To investigate the expression changes of the genes under various abiotic stresses and ABA treatment, time-course experiments were also performed, the results indicated that the expression levels of CsCML16, 18-2 and 42 were significantly induced under low temperature and salt condition, while CsCML38 was induced distinctly under drought stress and ABA treatment. Overall, CsCML genes showed diverse function in tea plant under various stimuli. These results will increase our knowledge of the significance of CsCML genes in tea plant in response to abiotic stresses and hormone treatments.
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Affiliation(s)
| | - Qiongqiong Zhou
- Tea Research Institute, Nanjing Agricultural University, No. 1 Weigang avenue, Nanjing, 210095, China
| | - Canmei Chen
- Tea Research Institute, Nanjing Agricultural University, No. 1 Weigang avenue, Nanjing, 210095, China
| | - Qiaoyun Cui
- Tea Research Institute, Nanjing Agricultural University, No. 1 Weigang avenue, Nanjing, 210095, China
| | - Yuxin Zhao
- Tea Research Institute, Nanjing Agricultural University, No. 1 Weigang avenue, Nanjing, 210095, China
| | - Kun Wang
- Tea Research Institute, Nanjing Agricultural University, No. 1 Weigang avenue, Nanjing, 210095, China
| | - Emmanuel Arkorful
- Tea Research Institute, Nanjing Agricultural University, No. 1 Weigang avenue, Nanjing, 210095, China
| | - Xuan Chen
- Tea Research Institute, Nanjing Agricultural University, No. 1 Weigang avenue, Nanjing, 210095, China
| | - Kang Sun
- Tea Research Institute, Nanjing Agricultural University, No. 1 Weigang avenue, Nanjing, 210095, China
| | - Xinghui Li
- Tea Research Institute, Nanjing Agricultural University, No. 1 Weigang avenue, Nanjing, 210095, China.
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Shkolnik D, Finkler A, Pasmanik-Chor M, Fromm H. CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6: A Key Regulator of Na + Homeostasis during Germination. PLANT PHYSIOLOGY 2019; 180:1101-1118. [PMID: 30894419 PMCID: PMC6548231 DOI: 10.1104/pp.19.00119] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Accepted: 03/08/2019] [Indexed: 05/06/2023]
Abstract
Salinity impairs seed germination and seedling establishment. We investigated the role of Arabidopsis (Arabidopsis thaliana) CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 (CAMTA6) in salinity stress responses during early germination. Compared with the wild type, the camta6-4 and camta6-5 mutants were more tolerant to NaCl and abscisic acid (ABA) and accumulated less Na+ In contrast, 4- to 11-d-old camta6 seedlings were more sensitive to NaCl. In camta6, expression of HIGH-AFFINITY K+ TRANSPORTER1 (AtHKT1;1), encoding an Na+/K+ transporter, was restricted to the radicles and was not enhanced by NaCl or ABA. During germination, the camta6 hkt1 double mutant was as sensitive as the wild type and hkt1 to NaCl, suggesting that HKT1;1 is crucial for the salt tolerance of camta6 An ABA response element in the HKT1;1 promoter was found to be indispensable for the enhanced expression of the gene in response to NaCl and to ABA. Transcriptome analysis of the wild type and camta6-5 with and without salt treatment revealed 1,020 up-regulated and 1,467 down-regulated salt-responsive genes in the wild type. Among these, 638 up-regulated and 1,242 down-regulated genes were classified as CAMTA6-dependent. Expression of several known salt stress-associated genes, including SALT OVERLY SENSITIVE1 and Na+/H+ ANTIPORTER, was impaired in camta6 mutants. Bioinformatics analysis of the 5' upstream sequences of the salt-responsive CAMTA6-dependent up-regulated genes revealed the CACGTGTC motif as the most prominent element, representing an ABA response element and a potential CAMTA-binding site. We suggest that CAMTA6 regulates, directly or indirectly, the expression of most of the salt-responsive genes in germinating seeds, including genes that are crucial for Na+ homeostasis and salt stress tolerance.
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Affiliation(s)
- Doron Shkolnik
- School of Plant Sciences and Food Security, Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Aliza Finkler
- School of Plant Sciences and Food Security, Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Metsada Pasmanik-Chor
- Bioinformatics Unit, Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Hillel Fromm
- School of Plant Sciences and Food Security, Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
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Markulin L, Drouet S, Corbin C, Decourtil C, Garros L, Renouard S, Lopez T, Mongelard G, Gutierrez L, Auguin D, Lainé E, Hano C. The control exerted by ABA on lignan biosynthesis in flax (Linum usitatissimum L.) is modulated by a Ca 2+ signal transduction involving the calmodulin-like LuCML15b. JOURNAL OF PLANT PHYSIOLOGY 2019; 236:74-87. [PMID: 30928768 DOI: 10.1016/j.jplph.2019.03.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Revised: 03/07/2019] [Accepted: 03/09/2019] [Indexed: 05/23/2023]
Abstract
The LuPLR1 gene encodes a pinoresinol lariciresinol reductase responsible for the biosynthesis of (+)-secoisolariciresinol, a cancer chemopreventive lignan, highly accumulated in the seedcoat of flax (Linum usitatissimum L.). Abscisic acid (ABA) plays a key role in the regulation of LuPLR1 gene expression and lignan accumulation in both seeds and cell suspensions, which require two cis-acting elements (ABRE and MYB2) for this regulation. Ca2+ is a universal secondary messenger involved in a wide range of physiological processes including ABA signaling. Therefore, Ca2+ may be involved as a mediator of LuPLR1 gene expression and lignan biosynthesis regulation exerted by ABA. To test the potential implication of Ca2+ signaling, a pharmacological approach was conducted using both flax cell suspensions and maturing seed systems coupled with a ß-glucuronidase reporter gene experiment, RT-qPCR analysis, lignan quantification as well as Ca2+ fluorescence imaging. Exogenous ABA application results in an increase in the intracellular Ca2+ cytosolic concentration, originating mainly from the extracellular medium. Promoter-reporter deletion experiments suggest that the ABRE and MYB2 cis-acting elements of the LuPLR1 gene promoter functioned as Ca2+-sensitive sequences involved in the ABA-mediated regulation. The use of specific inhibitors pointed the crucial roles of the Ca2+ sensors calmodulin-like proteins and Ca2+-dependent protein kinases in this regulation. This regulation appeared conserved in the two different studied systems, i.e. cell suspensions and maturing seeds. A calmodulin-like, LuCML15b, identified from gene network analysis is proposed as a key player involved in this signal transduction since RNAi experiments provided direct evidences of this role. Taken together, these results provide new information on the regulation of plant defense and human health-promoting compounds, which could be used to optimize their production.
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Affiliation(s)
- Lucija Markulin
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRA, USC1328, Université d'Orléans, Pôle Universitaire d'Eure et Loir, 21 rue de Loigny la Bataille, F-28000 Chartres, France; Bioactifs et Cosmétiques, GDR 3711 COSMACTIFS, CNRS Université d'Orléans, rue de Chartres, F-45100 Orléans, France
| | - Samantha Drouet
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRA, USC1328, Université d'Orléans, Pôle Universitaire d'Eure et Loir, 21 rue de Loigny la Bataille, F-28000 Chartres, France; Bioactifs et Cosmétiques, GDR 3711 COSMACTIFS, CNRS Université d'Orléans, rue de Chartres, F-45100 Orléans, France
| | - Cyrielle Corbin
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRA, USC1328, Université d'Orléans, Pôle Universitaire d'Eure et Loir, 21 rue de Loigny la Bataille, F-28000 Chartres, France; Bioactifs et Cosmétiques, GDR 3711 COSMACTIFS, CNRS Université d'Orléans, rue de Chartres, F-45100 Orléans, France
| | - Cédric Decourtil
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRA, USC1328, Université d'Orléans, Pôle Universitaire d'Eure et Loir, 21 rue de Loigny la Bataille, F-28000 Chartres, France; Bioactifs et Cosmétiques, GDR 3711 COSMACTIFS, CNRS Université d'Orléans, rue de Chartres, F-45100 Orléans, France
| | - Laurine Garros
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRA, USC1328, Université d'Orléans, Pôle Universitaire d'Eure et Loir, 21 rue de Loigny la Bataille, F-28000 Chartres, France; Bioactifs et Cosmétiques, GDR 3711 COSMACTIFS, CNRS Université d'Orléans, rue de Chartres, F-45100 Orléans, France
| | - Sullivan Renouard
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRA, USC1328, Université d'Orléans, Pôle Universitaire d'Eure et Loir, 21 rue de Loigny la Bataille, F-28000 Chartres, France; Bioactifs et Cosmétiques, GDR 3711 COSMACTIFS, CNRS Université d'Orléans, rue de Chartres, F-45100 Orléans, France
| | - Tatiana Lopez
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRA, USC1328, Université d'Orléans, Pôle Universitaire d'Eure et Loir, 21 rue de Loigny la Bataille, F-28000 Chartres, France; Bioactifs et Cosmétiques, GDR 3711 COSMACTIFS, CNRS Université d'Orléans, rue de Chartres, F-45100 Orléans, France
| | - Gaëlle Mongelard
- Centre de Ressources Régionales en Biologie Moléculaire (CRRBM), Université Picardie Jules Verne, 33 rue Saint-Leu, F-80039 Amiens, France
| | - Laurent Gutierrez
- Centre de Ressources Régionales en Biologie Moléculaire (CRRBM), Université Picardie Jules Verne, 33 rue Saint-Leu, F-80039 Amiens, France
| | - Daniel Auguin
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRA, USC1328, Université d'Orléans, Pôle Universitaire d'Eure et Loir, 21 rue de Loigny la Bataille, F-28000 Chartres, France; Bioactifs et Cosmétiques, GDR 3711 COSMACTIFS, CNRS Université d'Orléans, rue de Chartres, F-45100 Orléans, France
| | - Eric Lainé
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRA, USC1328, Université d'Orléans, Pôle Universitaire d'Eure et Loir, 21 rue de Loigny la Bataille, F-28000 Chartres, France; Bioactifs et Cosmétiques, GDR 3711 COSMACTIFS, CNRS Université d'Orléans, rue de Chartres, F-45100 Orléans, France
| | - Christophe Hano
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRA, USC1328, Université d'Orléans, Pôle Universitaire d'Eure et Loir, 21 rue de Loigny la Bataille, F-28000 Chartres, France; Bioactifs et Cosmétiques, GDR 3711 COSMACTIFS, CNRS Université d'Orléans, rue de Chartres, F-45100 Orléans, France.
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Genome-wide identification of CAMTA gene family members in Phaseolus vulgaris L. and their expression profiling during salt stress. Mol Biol Rep 2019; 46:2721-2732. [PMID: 30843175 DOI: 10.1007/s11033-019-04716-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Accepted: 02/23/2019] [Indexed: 12/23/2022]
Abstract
The calmodulin-binding transcriptional activator (CAMTA) family was first observed in tobacco (NtER1) during a screening for the CaM-binding proteins, which are known to be one of the fast response stress proteins. Due to the increased importance of plant transcription factors in recent years; genome-wide identification of CAMTA genes has been performed in several plant species, except for Phaseolus vulgaris. Therefore, our aim was to identify and characterize CAMTA genes in P. vulgaris via in silico genome-wide analysis approach. Our results showed a total of eight CAMTA genes that were identified and observed on five out of 11 chromosomes of P. vulgaris. Four gene couples were found to be segmentally-duplicated and these segmental duplication events were shown to occur from 29.97 to 92.06 MYA. The phylogenetic tree of CAMTA homologs from P. vulgaris, A. thaliana, and G. max. revealed three groups based on their homology and the intron numbers of Pvul-CAMTA genes, ranged from 11 to 12. According to the syteny analysis; CAMTA genes of P. vulgaris and G. max revealed higher similarity, because they have highly similar genomes compared to A. thaliana. All Pvul-CAMTA genes were targeted by miRNAs, which play a role in response mechanism of salt stress. To detect expression levels in different plant tissues, mRNA analysis of Pvul-CAMTA genes were performed using publicly available expression data in Phytozome v12.1. In addition, responses of Pvul-CAMTA genes to salt stress, were also examined via both RNAseq and qRT-PCR analysis. To identify and to obtain insight into biological functions of CAMTA genes in the genome of P. vulgaris, several analyses were conducted using many online and offline bioinformatic tools, genome databases and qRT-PCR analyses. Due to this study being the first in the identification of CAMTA genes in P. vulgaris, this study could be considered as an useful source for future CAMTA genes studies in either P. vulgaris or comparative different plant species.
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Guo L, Guo D, Yin W, Hou X. Tolerance strategies revealed in tree peony ( Paeonia suffruticosa; Paeoniaceae) ecotypes differentially adapted to desiccation. APPLICATIONS IN PLANT SCIENCES 2018; 6:e01191. [PMID: 30386716 PMCID: PMC6201725 DOI: 10.1002/aps3.1191] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Accepted: 09/05/2018] [Indexed: 05/29/2023]
Abstract
PREMISE OF THE STUDY Tree peony (Paeonia suffruticosa; Paeoniaceae) is well known for its ornamental value, edible oil, and medicinal properties. However, its growing area has been limited by drought that has been exacerbated by global climate change. METHODS Gene expression profiles of a drought-tolerant cultivar and a drought-sensitive cultivar during dehydration and rehydration were investigated by transcriptome analysis. Expression patterns of unigenes related to drought and recovery response and unrelated to either cultivar were classified by hierarchical clustering and real-time quantitative PCR (qPCR). RESULTS A total of 81,725 unigenes with a mean length of 762 nucleotides that may play roles in drought response were identified. Unigenes were characterized as being involved in lipid transport metabolism, proline metabolism, and photosynthesis. In addition, plant hormone signaling pathway genes were also characterized as potentially being involved in drought response. Expression patterns of the 20 drought-responsive unigenes verified by qPCR showed a differential expression pattern under either the drought or recovery treatment. DISCUSSION This is the first report to identify and verify unigenes of tree peonies with differing water sensitivity during dehydration and rehydration. This study offers a valuable resource for candidate genes involved in drought and provides insight into the breeding of drought-resistant tree peony cultivars.
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Affiliation(s)
- Lili Guo
- College of AgricultureHenan University of Science and TechnologyLuoyang471023People's Republic of China
| | - Dalong Guo
- College of ForestryHenan University of Science and TechnologyLuoyang471023People's Republic of China
| | - Weilun Yin
- College of Biological Sciences and TechnologyBeijing Forestry UniversityBeijing100083People's Republic of China
| | - Xiaogai Hou
- College of AgricultureHenan University of Science and TechnologyLuoyang471023People's Republic of China
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50
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De Vriese K, Costa A, Beeckman T, Vanneste S. Pharmacological Strategies for Manipulating Plant Ca 2+ Signalling. Int J Mol Sci 2018; 19:E1506. [PMID: 29783646 PMCID: PMC5983822 DOI: 10.3390/ijms19051506] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Revised: 05/10/2018] [Accepted: 05/12/2018] [Indexed: 11/20/2022] Open
Abstract
Calcium is one of the most pleiotropic second messengers in all living organisms. However, signalling specificity is encoded via spatio-temporally regulated signatures that act with surgical precision to elicit highly specific cellular responses. How this is brought about remains a big challenge in the plant field, in part due to a lack of specific tools to manipulate/interrogate the plant Ca2+ toolkit. In many cases, researchers resort to tools that were optimized in animal cells. However, the obviously large evolutionary distance between plants and animals implies that there is a good chance observed effects may not be specific to the intended plant target. Here, we provide an overview of pharmacological strategies that are commonly used to activate or inhibit plant Ca2+ signalling. We focus on highlighting modes of action where possible, and warn for potential pitfalls. Together, this review aims at guiding plant researchers through the Ca2+ pharmacology swamp.
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Affiliation(s)
- Kjell De Vriese
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, 9052 Ghent, Belgium.
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, 9052 Ghent, Belgium.
| | - Alex Costa
- Department of Biosciences, University of Milan, 20133 Milan, Italy.
- Instititute of Biophysics, Consiglio Nazionale delle Ricerche, 20133 Milan, Italy.
| | - Tom Beeckman
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, 9052 Ghent, Belgium.
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, 9052 Ghent, Belgium.
| | - Steffen Vanneste
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, 9052 Ghent, Belgium.
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, 9052 Ghent, Belgium.
- Lab of Plant Growth Analysis, Ghent University Global Campus, Songdomunhwa-Ro, 119, Yeonsu-gu, Incheon 21985, Korea.
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