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Manna M, Rengasamy B, Sinha AK. Nutrient and Water Availability Influence Rice Physiology, Root Architecture and Ionomic Balance via Auxin Signalling. PLANT, CELL & ENVIRONMENT 2024. [PMID: 39315660 DOI: 10.1111/pce.15171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Revised: 09/09/2024] [Accepted: 09/11/2024] [Indexed: 09/25/2024]
Abstract
Water and soil nutrients are the vital ingredients of crop production, and their efficient uptake is essentially dependent on root development, majorly regulated by auxin. For a water-loving crop like rice, how water availability regulates nutrient acquisition, additionally, how ambient nutrient level modulates water uptake, and the role of auxin therein is not well studied. While investigating the cross-talks among these components, we found water to be essential for auxin re-distribution in roots and shaping the root architecture. We also found that supplementing rice seedlings with moderate concentrations of mineral nutrients facilitated faster water uptake and greater nutrient enrichment in leaves compared to adequate nutrient supplementation. Additionally, moderate nutrient availability favoured greater stomatal density, stomatal conductance, photosynthesis, transpiration rate and water use efficiency when water was not limiting. Further, auxin supplementation enhanced root formation in rice, while affecting their water uptake ability, photosynthesis and transpiration causing differential mineral-specific uptake trends. The present study uncovers the existence of an intricate crosstalk among water, nutrients and auxin signalling the knowledge of which will enable optimizing the growth conditions for speed breeding of rice and harnessing the components of auxin signalling to improve water and nutrient use efficiency of rice.
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Affiliation(s)
- Mrinalini Manna
- National Institute of Plant Genome Research, New Delhi, India
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2
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Pukhovaya EM, Ramalho JJ, Weijers D. Polar targeting of proteins - a green perspective. J Cell Sci 2024; 137:jcs262068. [PMID: 39330548 DOI: 10.1242/jcs.262068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/28/2024] Open
Abstract
Cell polarity - the asymmetric distribution of molecules and cell structures within the cell - is a feature that almost all cells possess. Even though the cytoskeleton and other intracellular organelles can have a direction and guide protein distribution, the plasma membrane is, in many cases, essential for the asymmetric localization of proteins because it helps to concentrate proteins and restrict their localization. Indeed, many proteins that exhibit asymmetric or polarized localization are either embedded in the PM or located close to it in the cellular cortex. Such proteins, which we refer to here as 'polar proteins', use various mechanisms of membrane targeting, including vesicle trafficking, direct phospholipid binding, or membrane anchoring mediated by post-translational modifications or binding to other proteins. These mechanisms are often shared with non-polar proteins, yet the unique combinations of several mechanisms or protein-specific factors assure the asymmetric distribution of polar proteins. Although there is a relatively detailed understanding of polar protein membrane targeting mechanisms in animal and yeast models, knowledge in plants is more fragmented and focused on a limited number of known polar proteins in different contexts. In this Review, we combine the current knowledge of membrane targeting mechanisms and factors for known plant transmembrane and cortical proteins and compare these with the mechanisms elucidated in non-plant systems. We classify the known factors as general or polarity specific, and we highlight areas where more knowledge is needed to construct an understanding of general polar targeting mechanisms in plants or to resolve controversies.
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Affiliation(s)
- Evgeniya M Pukhovaya
- Laboratory of Biochemistry, Wageningen University, Stippeneng 4, 6708WE, Wageningen, The Netherlands
| | - João Jacob Ramalho
- Laboratory of Biochemistry, Wageningen University, Stippeneng 4, 6708WE, Wageningen, The Netherlands
| | - Dolf Weijers
- Laboratory of Biochemistry, Wageningen University, Stippeneng 4, 6708WE, Wageningen, The Netherlands
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3
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Mira MM, Hill RD, Stasolla C. Low-oxygen-induced root bending is altered by phytoglobin1 through mediation of ethylene response factors (ERFs) and auxin signaling. PLANTA 2024; 260:54. [PMID: 39012577 DOI: 10.1007/s00425-024-04482-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Accepted: 07/01/2024] [Indexed: 07/17/2024]
Abstract
MAIN CONCLUSION phytoglobin1 positively regulates root bending in hypoxic Arabidopsis roots through regulation of ethylene response factors and auxin transport. Hypoxia-induced root bending is known to be mediated by the redundant activity of the group VII ethylene response factors (ERFVII) RAP2.12 and HRE2, causing changes in polar auxin transport (PAT). Here, we show that phytoglobin1 (Pgb1), implicated in hypoxic adaptation through scavenging of nitric oxide (NO), can alter root direction under low oxygen. Hypoxia-induced bending is exaggerated in roots over-expressing Pgb1 and attenuated in those where the gene is suppressed. These effects were attributed to Pgb1 repressing both RAP2.12 and HRE2. Expression, immunological and genetic data place Pgb1 upstream of RAP2.12 and HRE2 in the regulation of root bending in oxygen-limiting environments. The attenuation of slanting in Pgb1-suppressing roots was associated with depletion of auxin activity at the root tip because of depression in PAT, while exaggeration of root bending in Pgb1-over-expressing roots with the retention of auxin activity. Changes in PIN2 distribution patterns, suggestive of redirection of auxin movement during hypoxia, might contribute to the differential root bending responses of the transgenic lines. In the end, Pgb1, by regulating NO levels, controls the expression of 2 ERFVIIs which, in a cascade, modulate PAT and, therefore, root bending.
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Affiliation(s)
- Mohammed M Mira
- Department of Plant Science, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada
- Department of Botany, Faculty of Science, Tanta University, Tanta, 31527, Egypt
| | - Robert D Hill
- Department of Plant Science, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada
| | - Claudio Stasolla
- Department of Plant Science, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada.
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4
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Wexler Y, Schroeder JI, Shkolnik D. Hydrotropism mechanisms and their interplay with gravitropism. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 118:1732-1746. [PMID: 38394056 DOI: 10.1111/tpj.16683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 01/29/2024] [Accepted: 02/02/2024] [Indexed: 02/25/2024]
Abstract
Plants partly optimize their water recruitment from the growth medium by directing root growth toward a moisture source, a phenomenon termed hydrotropism. The default mechanism of downward growth, termed gravitropism, often functions to counteract hydrotropism when the water-potential gradient deviates from the gravity vector. This review addresses the identity of the root sites in which hydrotropism-regulating factors function to attenuate gravitropism and the interplay between these various factors. In this context, the function of hormones, including auxin, abscisic acid, and cytokinins, as well as secondary messengers, calcium ions, and reactive oxygen species in the conflict between these two opposing tropisms is discussed. We have assembled the available data on the effects of various chemicals and genetic backgrounds on both gravitropism and hydrotropism, to provide an up-to-date perspective on the interactions that dictate the orientation of root tip growth. We specify the relevant open questions for future research. Broadening our understanding of root mechanisms of water recruitment holds great potential for providing advanced approaches and technologies that can improve crop plant performance under less-than-optimal conditions, in light of predicted frequent and prolonged drought periods due to global climate change.
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Affiliation(s)
- Yonatan Wexler
- Faculty of Life Sciences, School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, 69978, Israel
| | - Julian I Schroeder
- Cell and Developmental Biology Department, School of Biological Sciences, University of California San Diego, La Jolla, California, 92093-0116, USA
| | - Doron Shkolnik
- Faculty of Agriculture, Food and Environment, Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, 7610001, Israel
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5
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Pang L, Kobayashi A, Atsumi Y, Miyazawa Y, Fujii N, Dietrich D, Bennett MJ, Takahashi H. MIZU-KUSSEI1 (MIZ1) and GNOM/MIZ2 control not only positive hydrotropism but also phototropism in Arabidopsis roots. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:5026-5038. [PMID: 37220914 DOI: 10.1093/jxb/erad193] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Accepted: 05/22/2023] [Indexed: 05/25/2023]
Abstract
In response to unilateral blue light illumination, roots of some plant species such as Arabidopsis thaliana exhibit negative phototropism (bending away from light), which is important for light avoidance in nature. MIZU-KUSSEI1 (MIZ1) and GNOM/MIZ2 are essential for positive hydrotropism (i.e. in the presence of a moisture gradient, root bending towards greater water availability). Intriguingly, mutations in these genes also cause a substantial reduction in phototropism. Here, we examined whether the same tissue-specific sites of expression required for MIZ1- and GNOM/MIZ2-regulated hydrotropism in Arabidopsis roots are also required for phototropism. The attenuated phototropic response of miz1 roots was completely restored when a functional MIZ1-green fluorescent protein (GFP) fusion was expressed in the cortex of the root elongation zone but not in other tissues such as root cap, meristem, epidermis, or endodermis. The hydrotropic defect and reduced phototropism of miz2 roots were restored by GNOM/MIZ2 expression in either the epidermis, cortex, or stele, but not in the root cap or endodermis. Thus, the sites in root tissues that are involved in the regulation of MIZ1- and GNOM/MIZ2-dependent hydrotropism also regulate phototropism. These results suggest that MIZ1- and GNOM/MIZ2-mediated pathways are, at least in part, shared by hydrotropic and phototropic responses in Arabidopsis roots.
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Affiliation(s)
- Lei Pang
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Akie Kobayashi
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Yuka Atsumi
- Graduate School of Science and Engineering, Yamagata University, 1-4-12 Kojirakawa-machi, Yamagata 990-8560, Japan
| | - Yutaka Miyazawa
- Faculty of Science, Yamagata University, 1-4-12 Kojirakawa-machi, Yamagata 990-8560, Japan
| | - Nobuharu Fujii
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Daniela Dietrich
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Plant and Crop Sciences, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, UK
| | - Malcolm J Bennett
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Plant and Crop Sciences, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, UK
| | - Hideyuki Takahashi
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
- Research Center for Space Agriculture and Horticulture, Graduate School of Horticulture, Chiba University, 648 Matsudo, Chiba 271-8510, Japan
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6
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Roychoudhry S, Sageman-Furnas K, Wolverton C, Grones P, Tan S, Molnár G, De Angelis M, Goodman HL, Capstaff N, Lloyd JPB, Mullen J, Hangarter R, Friml J, Kepinski S. Antigravitropic PIN polarization maintains non-vertical growth in lateral roots. NATURE PLANTS 2023; 9:1500-1513. [PMID: 37666965 PMCID: PMC10505559 DOI: 10.1038/s41477-023-01478-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 07/04/2023] [Indexed: 09/06/2023]
Abstract
Lateral roots are typically maintained at non-vertical angles with respect to gravity. These gravitropic setpoint angles are intriguing because their maintenance requires that roots are able to effect growth response both with and against the gravity vector, a phenomenon previously attributed to gravitropism acting against an antigravitropic offset mechanism. Here we show how the components mediating gravitropism in the vertical primary root-PINs and phosphatases acting upon them-are reconfigured in their regulation such that lateral root growth at a range of angles can be maintained. We show that the ability of Arabidopsis lateral roots to bend both downward and upward requires the generation of auxin asymmetries and is driven by angle-dependent variation in downward gravitropic auxin flux acting against angle-independent upward, antigravitropic flux. Further, we demonstrate a symmetry in auxin distribution in lateral roots at gravitropic setpoint angle that can be traced back to a net, balanced polarization of PIN3 and PIN7 auxin transporters in the columella. These auxin fluxes are shifted by altering PIN protein phosphoregulation in the columella, either by introducing PIN3 phosphovariant versions or via manipulation of levels of the phosphatase subunit PP2A/RCN1. Finally, we show that auxin, in addition to driving lateral root directional growth, acts within the lateral root columella to induce more vertical growth by increasing RCN1 levels, causing a downward shift in PIN3 localization, thereby diminishing the magnitude of the upward, antigravitropic auxin flux.
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Affiliation(s)
| | - Katelyn Sageman-Furnas
- School of Biology, University of Leeds, Leeds, UK
- Department of Biology, Duke University, Durham, NC, USA
| | | | - Peter Grones
- Institute of Science and Technology, Vienna, Austria
- Umeå Plant Science Centre, Umeå, Sweden
| | - Shutang Tan
- Institute of Science and Technology, Vienna, Austria
| | - Gergely Molnár
- Institute of Science and Technology, Vienna, Austria
- Department of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences (BOKU), Vienna, Austria
| | | | - Heather L Goodman
- School of Biology, University of Leeds, Leeds, UK
- Tropic Biosciences Ltd, Norwich Research Park Innovation Centre, Norwich, UK
| | - Nicola Capstaff
- School of Biology, University of Leeds, Leeds, UK
- Department of Science, Innovation and Technology, UK Government, London, UK
| | - James P B Lloyd
- University of Western Australia, Perth, Western Australia, Australia
| | - Jack Mullen
- Department of Bioagricultural Sciences & Pest Management, Colorado State University, Fort Collins, CO, USA
| | - Roger Hangarter
- Department of Biology, Indiana University, Bloomington, IN, USA
| | - Jiří Friml
- Institute of Science and Technology, Vienna, Austria
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7
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Djemal R, Bradai M, Amor F, Hanin M, Ebel C. Wheat type one protein phosphatase promotes salt and osmotic stress tolerance in arabidopsis via auxin-mediated remodelling of the root system. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 201:107832. [PMID: 37327648 DOI: 10.1016/j.plaphy.2023.107832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 05/31/2023] [Accepted: 06/09/2023] [Indexed: 06/18/2023]
Abstract
The control of optimal root growth and plant stress responses depends largely on a variety of phytohormones among which auxin and brassinosteroids (BRs) are the most influential. We have previously reported that the durum wheat type 1 protein phosphatase TdPP1 participates in the control of root growth by modulating BR signaling. In this study, we pursue our understanding of how TdPP1 fulfills this regulatory function on root growth by evaluating the physiological and molecular responses of Arabidopsis TdPP1 over-expressing lines to abiotic stresses. Our results showed that when exposed to 300 mM Mannitol or 100 mM NaCl, the seedlings of TdPP1 over-expressors exhibit modified root architecture with higher lateral root density, and longer root hairs concomitant with a lower inhibition of the primary root growth. These lines also exhibit faster gravitropic response and a decrease in primary root growth inhibition when exposed to high concentrations of exogenous IAA. On another hand, a cross between TdPP1 overexpressors and DR5:GUS marker line was performed to monitor auxin accumulation in roots. Remarkably, the TdPP1 overexpression resulted in an enhanced auxin gradient under salt stress with a higher accumulation in primary and lateral root tips. Moreover, TdPP1 transgenics exhibit a significant induction of a subset of auxin-responsive genes under salt stress conditions. Therefore, our results reveal a role of PP1 in enhancing auxin signaling to help shape greater root plasticity thus improving plant stress resilience.
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Affiliation(s)
- Rania Djemal
- Plant Physiology and Functional Genomics Research Unit, Higher Institute of Biotechnology, University of Sfax, BP "1175", 3038, Sfax, Tunisia
| | - Mariem Bradai
- Plant Physiology and Functional Genomics Research Unit, Higher Institute of Biotechnology, University of Sfax, BP "1175", 3038, Sfax, Tunisia
| | - Fatma Amor
- Plant Physiology and Functional Genomics Research Unit, Higher Institute of Biotechnology, University of Sfax, BP "1175", 3038, Sfax, Tunisia
| | - Moez Hanin
- Plant Physiology and Functional Genomics Research Unit, Higher Institute of Biotechnology, University of Sfax, BP "1175", 3038, Sfax, Tunisia
| | - Chantal Ebel
- Plant Physiology and Functional Genomics Research Unit, Higher Institute of Biotechnology, University of Sfax, BP "1175", 3038, Sfax, Tunisia.
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8
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Wang J, Li C, Mao X, Wang J, Li L, Li J, Fan Z, Zhu Z, He L, Jing R. The wheat basic helix-loop-helix gene TabHLH123 positively modulates the formation of crown roots and is associated with plant height and 1000-grain weight under various conditions. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:2542-2555. [PMID: 36749713 DOI: 10.1093/jxb/erad051] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Accepted: 02/03/2023] [Indexed: 06/06/2023]
Abstract
Crown roots are the main components of the fibrous root system in cereal crops and play critical roles in plant adaptation; however, the molecular mechanisms underlying their formation in wheat (Triticum aestivum) have not been fully elucidated. In this study, we identified a wheat basic helix-loop-helix (bHLH) protein, TabHLH123, that interacts with the essential regulator of crown root initiation, MORE ROOT in wheat (TaMOR). TabHLH123 is expressed highly in shoot bases and roots. Ectopic expression of TabHLH123 in rice resulted in more roots compared with the wild type. TabHLH123 regulates the expression of genes controlling crown-root development and auxin metabolism, responses, and transport. In addition, we analysed the nucleotide sequence polymorphisms of TabHLH123s in the wheat genome and identified a superior haplotype, TabHLH123-6B, that is associated with high root dry weight and 1000-grain weight, and short plant height. Our study reveals the role of TabHLH123 in controlling the formation of crown roots and provides beneficial insights for molecular marker-assisted breeding in wheat.
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Affiliation(s)
- Jinping Wang
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- College of Agronomy, Shanxi Agricultural University, Taigu 030031, China
| | - Chaonan Li
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Xinguo Mao
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Jingyi Wang
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Long Li
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Jialu Li
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Zipei Fan
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Zhi Zhu
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Liheng He
- College of Agronomy, Shanxi Agricultural University, Taigu 030031, China
| | - Ruilian Jing
- National Key Facility for Crop Gene Resources and Genetic Improvement/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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9
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Tiwari M, Kumar R, Subramanian S, Doherty CJ, Jagadish SVK. Auxin-cytokinin interplay shapes root functionality under low-temperature stress. TRENDS IN PLANT SCIENCE 2023; 28:447-459. [PMID: 36599768 DOI: 10.1016/j.tplants.2022.12.004] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Revised: 11/16/2022] [Accepted: 12/06/2022] [Indexed: 06/17/2023]
Abstract
Low-temperature stress alters root system architecture. In particular, changes in the levels and response to auxin and cytokinin determine the fate of root architecture and function under stress because of their vital roles in regulating root cell division, differentiation, and elongation. An intricate nexus of genes encoding components of auxin and cytokinin biosynthesis, signaling, and transport components operate to counteract stress and facilitate optimum development. We review the role of auxin transport and signaling and its regulation by cytokinin during root development and stem cell maintenance under low-temperature stress. We highlight intricate mechanisms operating in root stem cells to minimize DNA damage by altering phytohormone levels, and discuss a working model for cytokinin in low-temperatures stress response.
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Affiliation(s)
- Manish Tiwari
- Department of Agronomy, Kansas State University, Manhattan, KA 66506, USA.
| | - Ritesh Kumar
- Department of Agronomy, Kansas State University, Manhattan, KA 66506, USA
| | - Senthil Subramanian
- Department of Agronomy, Horticulture, and Plant Science, South Dakota State University, Brookings, SD 57006, USA
| | - Colleen J Doherty
- Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC 27695, USA
| | - S V Krishna Jagadish
- Department of Agronomy, Kansas State University, Manhattan, KA 66506, USA; Department of Plant and Soil Science, Texas Tech University, Lubbock, TX 79410, USA.
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10
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Thomas M, Soriano A, O'Connor C, Crabos A, Nacry P, Thompson M, Hrabak E, Divol F, Péret B. pin2 mutant agravitropic root phenotype is conditional and nutrient-sensitive. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2023; 329:111606. [PMID: 36706868 DOI: 10.1016/j.plantsci.2023.111606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 01/20/2023] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
Plants have the capacity to sense and adapt to environmental factors using the phytohormone auxin as a major regulator of tropism and development. Among these responses, gravitropism is essential for plant roots to grow downward in the search for nutrients and water. We discovered a new mutant allele of the auxin efflux transporter PIN2 that revealed that pin2 agravitropic root mutants are conditional and nutrient-sensitive. We describe that nutrient composition of the medium, rather than osmolarity, can revert the agravitropic root phenotype of pin2. Indeed, on phosphorus- and nitrogen-deprived media, the agravitropic root defect was restored independently of primary root growth levels. Slow and fast auxin responses were evaluated using DR5 and R2D2 probes, respectively, and revealed a strong modulation by nutrient composition of the culture medium. We evaluated the role of PIN and AUX auxin transporters and demonstrated that neither PIN3 nor AUX1 are involved in this process. However, we observed the ectopic expression of PIN1 in the epidermis in the pin2 mutant background associated with permissive, but not restrictive, conditions. This ectopic expression was associated with a restoration of the asymmetric accumulation of auxin necessary for the reorientation of the root according to gravity. These observations suggest a strong regulation of auxin distribution by nutrients availability, directly impacting root's ability to drive their gravitropic response.
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Affiliation(s)
- Marion Thomas
- IPSiM, Univ Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France
| | - Alexandre Soriano
- IPSiM, Univ Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France
| | - Claire O'Connor
- IPSiM, Univ Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France
| | - Amandine Crabos
- IPSiM, Univ Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France
| | - Philippe Nacry
- IPSiM, Univ Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France
| | | | | | - Fanchon Divol
- IPSiM, Univ Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France
| | - Benjamin Péret
- IPSiM, Univ Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France.
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11
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Shao Z, Zhao B, Kotla P, Burns JG, Tran J, Ke M, Chen X, Browning KS, Qiao H. Phosphorylation status of Bβ subunit acts as a switch to regulate the function of phosphatase PP2A in ethylene-mediated root growth inhibition. THE NEW PHYTOLOGIST 2022; 236:1762-1778. [PMID: 36073540 PMCID: PMC9828452 DOI: 10.1111/nph.18467] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Accepted: 08/25/2022] [Indexed: 05/20/2023]
Abstract
The various combinations and regulations of different subunits of phosphatase PP2A holoenzymes underlie their functional complexity and importance. However, molecular mechanisms governing the assembly of PP2A complex in response to external or internal signals remain largely unknown, especially in Arabidopsis thaliana. We found that the phosphorylation status of Bβ of PP2A acts as a switch to regulate the activity of PP2A. In the absence of ethylene, phosphorylated Bβ leads to an inactivation of PP2A; the substrate EIR1 remains to be phosphorylated, preventing the EIR1-mediated auxin transport in epidermis, leading to normal root growth. Upon ethylene treatment, the dephosphorylated Bβ mediates the formation of the A2-C4-Bβ protein complex to activate PP2A, resulting in the dephosphorylation of EIR1 to promote auxin transport in epidermis of elongation zone, leading to root growth inhibition. Altogether, our research revealed a novel molecular mechanism by which the dephosphorylation of Bβ subunit switches on PP2A activity to dephosphorylate EIR1 to establish EIR1-mediated auxin transport in the epidermis in elongation zone for root growth inhibition in response to ethylene.
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Affiliation(s)
- Zhengyao Shao
- Institute for Cellular and Molecular BiologyThe University of Texas at AustinAustinTX78712USA
- Department of Molecular BiosciencesThe University of Texas at AustinAustinTX78712USA
| | - Bo Zhao
- Institute for Cellular and Molecular BiologyThe University of Texas at AustinAustinTX78712USA
- Department of Molecular BiosciencesThe University of Texas at AustinAustinTX78712USA
| | - Prashanth Kotla
- Institute for Cellular and Molecular BiologyThe University of Texas at AustinAustinTX78712USA
| | - Jackson G. Burns
- Institute for Cellular and Molecular BiologyThe University of Texas at AustinAustinTX78712USA
| | - Jaclyn Tran
- Institute for Cellular and Molecular BiologyThe University of Texas at AustinAustinTX78712USA
- Department of Molecular BiosciencesThe University of Texas at AustinAustinTX78712USA
| | - Meiyu Ke
- Haixia Institute of Science and Technology, Horticultural Plant Biology and Metabolomics CenterFujian Agriculture and Forestry UniversityFuzhouFujian350002China
| | - Xu Chen
- Haixia Institute of Science and Technology, Horticultural Plant Biology and Metabolomics CenterFujian Agriculture and Forestry UniversityFuzhouFujian350002China
| | - Karen S. Browning
- Institute for Cellular and Molecular BiologyThe University of Texas at AustinAustinTX78712USA
- Department of Molecular BiosciencesThe University of Texas at AustinAustinTX78712USA
| | - Hong Qiao
- Institute for Cellular and Molecular BiologyThe University of Texas at AustinAustinTX78712USA
- Department of Molecular BiosciencesThe University of Texas at AustinAustinTX78712USA
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Manna M, Rengasamy B, Ambasht NK, Sinha AK. Characterization and expression profiling of PIN auxin efflux transporters reveal their role in developmental and abiotic stress conditions in rice. FRONTIERS IN PLANT SCIENCE 2022; 13:1059559. [PMID: 36531415 PMCID: PMC9751476 DOI: 10.3389/fpls.2022.1059559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Accepted: 11/11/2022] [Indexed: 06/17/2023]
Abstract
The auxin efflux transporter proteins called PINs ferry auxin from its source to sinks in particular directions depending on their polar localizations in the plasma membrane, thus facilitating the development of the entire plant architecture. The rice genome has 12 PIN genes distributed over eight chromosomes. To study their roles in plant development, abiotic stress responsiveness, and shaping an auxin-dependent root architecture, a genome-wide analysis was carried out. Based on phylogeny, cellular localization, and hydrophilic loop domain size, the PINs were categorized into canonical and noncanonical PINs. PINs were found expressed in all of the organs of plants that emphasized their indispensable role throughout the plant's life cycle. We discovered that PIN5C and PIN9 were upregulated during salt and drought stress. We also found that regardless of its cellular level, auxin functioned as a molecular switch to turn on auxin biosynthesis genes. On the contrary, although PIN expression was upregulated upon initial treatment with auxin, prolonged auxin treatment not only led to their downregulation but also led to the development of auxin-dependent altered root formation in rice. Our study paves the way for developing stress-tolerant rice and plants with a desirable root architecture by genetic engineering.
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Affiliation(s)
- Mrinalini Manna
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | | | | | - Alok Krishna Sinha
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
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13
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Yang Y, Liu F, Liu L, Zhu M, Yuan J, Mai YX, Zou JJ, Le J, Wang Y, Palme K, Li X, Wang Y, Wang L. The unconventional prefoldin RPB5 interactor mediates the gravitropic response by modulating cytoskeleton organization and auxin transport in Arabidopsis. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2022; 64:1916-1934. [PMID: 35943836 DOI: 10.1111/jipb.13341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Accepted: 08/08/2022] [Indexed: 06/15/2023]
Abstract
Gravity-induced root curvature involves the asymmetric distribution of the phytohormone auxin. This response depends on the concerted activities of the auxin transporters such as PIN-FORMED (PIN) proteins for auxin efflux and AUXIN RESISTANT 1 (AUX1) for auxin influx. However, how the auxin gradient is established remains elusive. Here we identified a new mutant with a short root, strong auxin distribution in the lateral root cap and an impaired gravitropic response. The causal gene encoded an Arabidopsis homolog of the human unconventional prefoldin RPB5 interactor (URI). AtURI interacted with prefoldin 2 (PFD2) and PFD6, two β-type PFD members that modulate actin and tubulin patterning in roots. The auxin reporter DR5rev :GFP showed that asymmetric auxin redistribution after gravistimulation is disordered in aturi-1 root tips. Treatment with the endomembrane protein trafficking inhibitor brefeldin A indicated that recycling of the auxin transporter PIN2 is disrupted in aturi-1 roots as well as in pfd mutants. We propose that AtURI cooperates with PFDs to recycle PIN2 and modulate auxin distribution.
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Affiliation(s)
- Yi Yang
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Daizong Street 61, Tai'an, 271018, China
- Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, 253023, China
- Sino-German Joint Research Center on Agricultural Biology, College of Life Sciences, Shandong Agricultural University, Daizong Street 61, Tai'an, 271018, China
| | - Fang Liu
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Daizong Street 61, Tai'an, 271018, China
- Faculty of Biology, Institute of Biology II/Molecular Plant Physiology, Albert-Ludwigs-University of Freiburg, Schänzlestrasse 1, Freiburg, D-79104, Germany
| | - Le Liu
- Faculty of Biology, Institute of Biology II/Molecular Plant Physiology, Albert-Ludwigs-University of Freiburg, Schänzlestrasse 1, Freiburg, D-79104, Germany
| | - Mingyue Zhu
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Daizong Street 61, Tai'an, 271018, China
- Sino-German Joint Research Center on Agricultural Biology, College of Life Sciences, Shandong Agricultural University, Daizong Street 61, Tai'an, 271018, China
| | - Jinfeng Yuan
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Daizong Street 61, Tai'an, 271018, China
- Sino-German Joint Research Center on Agricultural Biology, College of Life Sciences, Shandong Agricultural University, Daizong Street 61, Tai'an, 271018, China
| | - Yan-Xia Mai
- National Key Laboratory of Plant Molecular Genetics (NKLPMG), CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology (SIPPE), Chinese Academy of Sciences (CAS), Shanghai, 200032, China
| | - Jun-Jie Zou
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Jie Le
- Key Laboratory of Plant Molecular Physiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yonghong Wang
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Daizong Street 61, Tai'an, 271018, China
| | - Klaus Palme
- Sino-German Joint Research Center on Agricultural Biology, College of Life Sciences, Shandong Agricultural University, Daizong Street 61, Tai'an, 271018, China
- Faculty of Biology, Institute of Biology II/Molecular Plant Physiology, Albert-Ludwigs-University of Freiburg, Schänzlestrasse 1, Freiburg, D-79104, Germany
| | - Xugang Li
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Daizong Street 61, Tai'an, 271018, China
- Sino-German Joint Research Center on Agricultural Biology, College of Life Sciences, Shandong Agricultural University, Daizong Street 61, Tai'an, 271018, China
| | - Yong Wang
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Daizong Street 61, Tai'an, 271018, China
| | - Long Wang
- National Key Laboratory of Plant Molecular Genetics (NKLPMG), CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology (SIPPE), Chinese Academy of Sciences (CAS), Shanghai, 200032, China
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Wang H, Ouyang Q, Yang C, Zhang Z, Hou D, Liu H, Xu H. Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism. Int J Mol Sci 2022; 23:ijms23168965. [PMID: 36012245 PMCID: PMC9409181 DOI: 10.3390/ijms23168965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2022] [Revised: 08/08/2022] [Accepted: 08/09/2022] [Indexed: 11/20/2022] Open
Abstract
The distribution and content of auxin within plant tissues affect a variety of important growth and developmental processes. Polar auxin transport (PAT), mainly mediated by auxin influx and efflux transporters, plays a vital role in determining auxin maxima and gradients in plants. The auxin efflux carrier PIN-FORMED (PIN) family is one of the major protein families involved in PAT. Rice (Oryza sativa L.) genome possesses 12 OsPIN genes. However, the detailed functions of OsPIN genes involved in regulating the rice architecture and gravity response are less well understood. In the present study, OsPIN1b was disrupted by CRISPR/Cas9 technology, and its roles in modulating rice architecture and root gravitropism were investigated. Tissue-specific analysis showed that OsPIN1b was mainly expressed in roots, stems and sheaths at the seedling stage, and the transcript abundance was progressively decreased during the seedling stages. Expression of OsPIN1b could be quickly and greatly induced by NAA, indicating that OsPIN1b played a vital role in PAT. IAA homeostasis was disturbed in ospin1b mutants, as evidenced by the changed sensitivity of shoot and root to NAA and NPA treatment, respectively. Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage. Moreover, ospin1b mutants displayed a curly root phenotype cultured with tap water regardless of lighting conditions, while nutrient solution culture could partially rescue the curly root phenotype in light and almost completely abolish this phenotype in darkness, indicating the involvement of the integration of light and nutrient signals in root gravitropism regulation. Additionally, amyloplast sedimentation was impaired in the peripheral tiers of the ospin1b root cap columella cell, while it was not the main contributor to the abnormal root gravitropism. These data suggest that OsPIN1b not only plays a vital role in regulating rice architecture but also functions in regulating root gravitropism by the integration of light and nutrient signals.
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Affiliation(s)
- Huihui Wang
- College of Agriculture, Henan University of Science and Technology, Luoyang 471000, China
| | - Qiqi Ouyang
- College of Agriculture, Henan University of Science and Technology, Luoyang 471000, China
| | - Chong Yang
- College of Agriculture, Henan University of Science and Technology, Luoyang 471000, China
| | - Zhuoyan Zhang
- College of Agriculture, Henan University of Science and Technology, Luoyang 471000, China
| | - Dianyun Hou
- College of Agriculture, Henan University of Science and Technology, Luoyang 471000, China
| | - Hao Liu
- College of Agriculture, Henan University of Science and Technology, Luoyang 471000, China
| | - Huawei Xu
- College of Agriculture, Henan University of Science and Technology, Luoyang 471000, China
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15
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Transcription Profile of Auxin Related Genes during Positively Gravitropic Hypocotyl Curvature of Brassica rapa. PLANTS 2022; 11:plants11091191. [PMID: 35567192 PMCID: PMC9105288 DOI: 10.3390/plants11091191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 04/19/2022] [Accepted: 04/25/2022] [Indexed: 11/20/2022]
Abstract
Unlike typical negative gravitropic curvature, young hypocotyls of Brassica rapa and other dicots exhibit positive gravitropism. This positive curvature occurs at the base of the hypocotyl and is followed by the typical negative gravity-induced curvature. We investigated the role of auxin in both positive and negative hypocotyl curvature by examining the transcription of PIN1, PIN3, IAA5 and ARG1 in curving tissue. We compared tissue extraction of the convex and concave flank with Solid Phase Gene Extraction (SPGE). Based on Ubiquitin1 (UBQ1) as a reference gene, the log (2) fold change of all examined genes was determined. Transcription of the examined genes varied during the graviresponse suggesting that these genes affect differential elongation. The transcription of all genes was upregulated in the lower flank and downregulated in the upper flank during the initial downward curving period. After 48 h, the transcription profile reversed, suggesting that the ensuing negative gravicurvature is controlled by the same genes as the positive gravicurvature. High-spatial resolution profiling using SPGE revealed that the transcription profile of the examined genes was spatially distinct within the curving tissue. The comparison of the hypocotyl transcription profile with the root tip indicated that the tip tissue is a suitable reference for curving hypocotyls and that root and hypocotyl curvature are controlled by the same physiological processes.
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16
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Tissue specificity and responses to abiotic stresses and hormones of PIN genes in rice. Biologia (Bratisl) 2022. [DOI: 10.1007/s11756-022-01031-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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17
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Liu J, Shi X, Chang Z, Ding Y, Ding C. Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development. PLANT & CELL PHYSIOLOGY 2022; 63:305-316. [PMID: 34888695 DOI: 10.1093/pcp/pcab172] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2021] [Accepted: 12/09/2021] [Indexed: 06/13/2023]
Abstract
The essential role of auxin in plant growth and development is well known. Pathways related to auxin synthesis, transport and signaling have been extensively studied in recent years, and the PIN-FORMED (PIN) protein family has been identified as being pivotal for polar auxin transport and distribution. However, research focused on the functional characterization of PIN proteins in rice is still lacking. In this study, we investigated the expression and function of OsPIN1c and OsPIN1d in the japonica rice variety (Nipponbare) using gene knockout and high-throughput RNA sequencing analysis. The results showed that OsPIN1c and OsPIN1d were mainly expressed in young panicles and exhibited a redundant function. Furthermore, OsPIN1c or OsPIN1d loss-of-function mutants presented a mild phenotype compared with the wild type. However, in addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double-mutant lines of OsPIN1c and OsPIN1d. Severe defects included smaller inflorescence meristem and panicle sizes, fewer primary branches, elongated bract leaves, non-degraded hair and no spikelet growth. Interestingly, ospin1cd-3, a double-mutant line with functional retention of OsPIN1d, showed milder defects than those observed in other mutants. Additionally, several critical regulators of reproductive development, such as OsPID, LAX1, OsMADS1 and OsSPL14/IPA1, were differentially expressed in ospin1c-1 ospin1d-1, supporting the hypothesis that OsPIN1c and OsPIN1d are involved in regulating panicle development. Therefore, this study provides novel insights into the auxin pathways that regulate plant reproductive development in monocots.
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Affiliation(s)
- Jiajun Liu
- College of Agriculture, Nanjing Agricultural University, No.1 Weigang, Nanjing 210095, People's Republic of China
| | - Xi'an Shi
- College of Agriculture, Nanjing Agricultural University, No.1 Weigang, Nanjing 210095, People's Republic of China
| | - Zhongyuan Chang
- College of Agriculture, Nanjing Agricultural University, No.1 Weigang, Nanjing 210095, People's Republic of China
| | - Yanfeng Ding
- College of Agriculture, Nanjing Agricultural University, No.1 Weigang, Nanjing 210095, People's Republic of China
- Key Laboratory of Crop Physiology Ecology and Production Management, Ministry of Agriculture, No.1 Weigang, Nanjing 210095, People's Republic of China
- Collaborative Innovation Center for Modern Crop Production co-sponsored by Province and Ministry, Nanjing Agricultural University, No.1 Weigang, Nanjing 210095, People's Republic of China
| | - Chengqiang Ding
- College of Agriculture, Nanjing Agricultural University, No.1 Weigang, Nanjing 210095, People's Republic of China
- Key Laboratory of Crop Physiology Ecology and Production Management, Ministry of Agriculture, No.1 Weigang, Nanjing 210095, People's Republic of China
- Collaborative Innovation Center for Modern Crop Production co-sponsored by Province and Ministry, Nanjing Agricultural University, No.1 Weigang, Nanjing 210095, People's Republic of China
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18
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Marconi M, Gallemi M, Benkova E, Wabnik K. A coupled mechano-biochemical model for cell polarity guided anisotropic root growth. eLife 2021; 10:72132. [PMID: 34723798 PMCID: PMC8716106 DOI: 10.7554/elife.72132] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Accepted: 10/26/2021] [Indexed: 11/21/2022] Open
Abstract
Plants develop new organs to adjust their bodies to dynamic changes in the environment. How independent organs achieve anisotropic shapes and polarities is poorly understood. To address this question, we constructed a mechano-biochemical model for Arabidopsis root meristem growth that integrates biologically plausible principles. Computer model simulations demonstrate how differential growth of neighboring tissues results in the initial symmetry-breaking leading to anisotropic root growth. Furthermore, the root growth feeds back on a polar transport network of the growth regulator auxin. Model, predictions are in close agreement with in vivo patterns of anisotropic growth, auxin distribution, and cell polarity, as well as several root phenotypes caused by chemical, mechanical, or genetic perturbations. Our study demonstrates that the combination of tissue mechanics and polar auxin transport organizes anisotropic root growth and cell polarities during organ outgrowth. Therefore, a mobile auxin signal transported through immobile cells drives polarity and growth mechanics to coordinate complex organ development.
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Affiliation(s)
- Marco Marconi
- CBGP Centro de Biotecnologia y Genomica de Plantas UPM-INIA, Pozuelo de Alarcón, Spain
| | - Marcal Gallemi
- Institute of Science and Technology (IST), Klosterneuburg, Austria
| | - Eva Benkova
- Institute of Science and Technology (IST), Klosterneuburg, Austria
| | - Krzysztof Wabnik
- CBGP Centro de Biotecnologia y Genomica de Plantas UPM-INIA, Pozuelo de Alarcón, Spain
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19
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Cséplő Á, Zsigmond L, Andrási N, Baba AI, Labhane NM, Pető A, Kolbert Z, Kovács HE, Steinbach G, Szabados L, Fehér A, Rigó G. The AtCRK5 Protein Kinase Is Required to Maintain the ROS NO Balance Affecting the PIN2-Mediated Root Gravitropic Response in Arabidopsis. Int J Mol Sci 2021; 22:5979. [PMID: 34205973 PMCID: PMC8197844 DOI: 10.3390/ijms22115979] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 05/24/2021] [Accepted: 05/28/2021] [Indexed: 11/18/2022] Open
Abstract
The Arabidopsis AtCRK5 protein kinase is involved in the establishment of the proper auxin gradient in many developmental processes. Among others, the Atcrk5-1 mutant was reported to exhibit a delayed gravitropic response via compromised PIN2-mediated auxin transport at the root tip. Here, we report that this phenotype correlates with lower superoxide anion (O2•-) and hydrogen peroxide (H2O2) levels but a higher nitric oxide (NO) content in the mutant root tips in comparison to the wild type (AtCol-0). The oxidative stress inducer paraquat (PQ) triggering formation of O2•- (and consequently, H2O2) was able to rescue the gravitropic response of Atcrk5-1 roots. The direct application of H2O2 had the same effect. Under gravistimulation, correct auxin distribution was restored (at least partially) by PQ or H2O2 treatment in the mutant root tips. In agreement, the redistribution of the PIN2 auxin efflux carrier was similar in the gravistimulated PQ-treated mutant and untreated wild type roots. It was also found that PQ-treatment decreased the endogenous NO level at the root tip to normal levels. Furthermore, the mutant phenotype could be reverted by direct manipulation of the endogenous NO level using an NO scavenger (cPTIO). The potential involvement of AtCRK5 protein kinase in the control of auxin-ROS-NO-PIN2-auxin regulatory loop is discussed.
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Affiliation(s)
- Ágnes Cséplő
- Biological Research Centre (BRC), Institute of Plant Biology, Eötvös Loránd Research Network (ELKH), H-6726 Szeged, Hungary; (Á.C.); (L.Z.); (N.A.); (A.I.B.); (H.E.K.); (G.S.); (L.S.); (A.F.)
| | - Laura Zsigmond
- Biological Research Centre (BRC), Institute of Plant Biology, Eötvös Loránd Research Network (ELKH), H-6726 Szeged, Hungary; (Á.C.); (L.Z.); (N.A.); (A.I.B.); (H.E.K.); (G.S.); (L.S.); (A.F.)
| | - Norbert Andrási
- Biological Research Centre (BRC), Institute of Plant Biology, Eötvös Loránd Research Network (ELKH), H-6726 Szeged, Hungary; (Á.C.); (L.Z.); (N.A.); (A.I.B.); (H.E.K.); (G.S.); (L.S.); (A.F.)
| | - Abu Imran Baba
- Biological Research Centre (BRC), Institute of Plant Biology, Eötvös Loránd Research Network (ELKH), H-6726 Szeged, Hungary; (Á.C.); (L.Z.); (N.A.); (A.I.B.); (H.E.K.); (G.S.); (L.S.); (A.F.)
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden
| | - Nitin M. Labhane
- Department of Botany, Bhavan’s College Andheri West, Mumbai 400058, India;
| | - Andrea Pető
- Department of Plant Biology, University of Szeged, 52. Középfasor, H-6726 Szeged, Hungary; (A.P.); (Z.K.)
- Food Chain Safety Center Nonprofit Ltd., H-1024 Budapest, Hungary
| | - Zsuzsanna Kolbert
- Department of Plant Biology, University of Szeged, 52. Középfasor, H-6726 Szeged, Hungary; (A.P.); (Z.K.)
| | - Hajnalka E. Kovács
- Biological Research Centre (BRC), Institute of Plant Biology, Eötvös Loránd Research Network (ELKH), H-6726 Szeged, Hungary; (Á.C.); (L.Z.); (N.A.); (A.I.B.); (H.E.K.); (G.S.); (L.S.); (A.F.)
- Budapest, Kossuth Lajos Sugárút, 72/D, H-6724 Szeged, Hungary
| | - Gábor Steinbach
- Biological Research Centre (BRC), Institute of Plant Biology, Eötvös Loránd Research Network (ELKH), H-6726 Szeged, Hungary; (Á.C.); (L.Z.); (N.A.); (A.I.B.); (H.E.K.); (G.S.); (L.S.); (A.F.)
- Cellular Imaging Laboratory, Biological Research Centre, Eötvös Loránd Research Network, H-6726 Szeged, Hungary
| | - László Szabados
- Biological Research Centre (BRC), Institute of Plant Biology, Eötvös Loránd Research Network (ELKH), H-6726 Szeged, Hungary; (Á.C.); (L.Z.); (N.A.); (A.I.B.); (H.E.K.); (G.S.); (L.S.); (A.F.)
| | - Attila Fehér
- Biological Research Centre (BRC), Institute of Plant Biology, Eötvös Loránd Research Network (ELKH), H-6726 Szeged, Hungary; (Á.C.); (L.Z.); (N.A.); (A.I.B.); (H.E.K.); (G.S.); (L.S.); (A.F.)
- Department of Plant Biology, University of Szeged, 52. Középfasor, H-6726 Szeged, Hungary; (A.P.); (Z.K.)
| | - Gábor Rigó
- Biological Research Centre (BRC), Institute of Plant Biology, Eötvös Loránd Research Network (ELKH), H-6726 Szeged, Hungary; (Á.C.); (L.Z.); (N.A.); (A.I.B.); (H.E.K.); (G.S.); (L.S.); (A.F.)
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20
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Pařízková B, Žukauskaitė A, Vain T, Grones P, Raggi S, Kubeš MF, Kieffer M, Doyle SM, Strnad M, Kepinski S, Napier R, Doležal K, Robert S, Novák O. New fluorescent auxin probes visualise tissue-specific and subcellular distributions of auxin in Arabidopsis. THE NEW PHYTOLOGIST 2021; 230:535-549. [PMID: 33438224 DOI: 10.1111/nph.17183] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 12/21/2020] [Indexed: 05/09/2023]
Abstract
In a world that will rely increasingly on efficient plant growth for sufficient food, it is important to learn about natural mechanisms of phytohormone action. In this work, the introduction of a fluorophore to an auxin molecule represents a sensitive and non-invasive method to directly visualise auxin localisation with high spatiotemporal resolution. The state-of-the-art multidisciplinary approaches of genetic and chemical biology analysis together with live cell imaging, liquid chromatography-mass spectrometry (LC-MS) and surface plasmon resonance (SPR) methods were employed for the characterisation of auxin-related biological activity, distribution and stability of the presented compounds in Arabidopsis thaliana. Despite partial metabolisation in vivo, these fluorescent auxins display an uneven and dynamic distribution leading to the formation of fluorescence maxima in tissues known to concentrate natural auxin, such as the concave side of the apical hook. Importantly, their distribution is altered in response to different exogenous stimuli in both roots and shoots. Moreover, we characterised the subcellular localisation of the fluorescent auxin analogues as being present in the endoplasmic reticulum and endosomes. Our work provides powerful tools to visualise auxin distribution within different plant tissues at cellular or subcellular levels and in response to internal and environmental stimuli during plant development.
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Affiliation(s)
- Barbora Pařízková
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
| | - Asta Žukauskaitė
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
| | - Thomas Vain
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
| | - Peter Grones
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
| | - Sara Raggi
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
| | - Martin F Kubeš
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
- School of Life Sciences, The University of Warwick, Coventry, CV4 7AL, UK
| | - Martin Kieffer
- Centre for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Siamsa M Doyle
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
| | - Miroslav Strnad
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
| | - Stefan Kepinski
- Centre for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Richard Napier
- School of Life Sciences, The University of Warwick, Coventry, CV4 7AL, UK
| | - Karel Doležal
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
- Department of Chemical Biology, Faculty of Science, Palacký University, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
| | - Stéphanie Robert
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
| | - Ondřej Novák
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, Olomouc, CZ-78371, Czech Republic
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
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21
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Máthé C, M-Hamvas M, Freytag C, Garda T. The Protein Phosphatase PP2A Plays Multiple Roles in Plant Development by Regulation of Vesicle Traffic-Facts and Questions. Int J Mol Sci 2021; 22:975. [PMID: 33478110 PMCID: PMC7835740 DOI: 10.3390/ijms22020975] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 01/12/2021] [Accepted: 01/15/2021] [Indexed: 12/18/2022] Open
Abstract
The protein phosphatase PP2A is essential for the control of integrated eukaryotic cell functioning. Several cellular and developmental events, e.g., plant growth regulator (PGR) mediated signaling pathways are regulated by reversible phosphorylation of vesicle traffic proteins. Reviewing present knowledge on the relevant role of PP2A is timely. We discuss three aspects: (1) PP2A regulates microtubule-mediated vesicle delivery during cell plate assembly. PP2A dephosphorylates members of the microtubule associated protein family MAP65, promoting their binding to microtubules. Regulation of phosphatase activity leads to changes in microtubule organization, which affects vesicle traffic towards cell plate and vesicle fusion to build the new cell wall between dividing cells. (2) PP2A-mediated inhibition of target of rapamycin complex (TORC) dependent signaling pathways contributes to autophagy and this has possible connections to the brassinosteroid signaling pathway. (3) Transcytosis of vesicles transporting PIN auxin efflux carriers. PP2A regulates vesicle localization and recycling of PINs related to GNOM (a GTP-GDP exchange factor) mediated pathways. The proper intracellular traffic of PINs is essential for auxin distribution in the plant body, thus in whole plant development. Overall, PP2A has essential roles in membrane interactions of plant cell and it is crucial for plant development and stress responses.
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Affiliation(s)
- Csaba Máthé
- Department of Botany, Faculty of Science and Technology, University of Debrecen, H-4032 Debrecen, Hungary; (M.M.-H.); (C.F.); (T.G.)
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22
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Farooq M, Jan R, Kim KM. Gravistimulation effects on Oryza sativa amino acid profile, growth pattern and expression of OsPIN genes. Sci Rep 2020; 10:17303. [PMID: 33057095 PMCID: PMC7566508 DOI: 10.1038/s41598-020-74531-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Accepted: 10/01/2020] [Indexed: 11/09/2022] Open
Abstract
Gravity is an important ecological factor regulating plant growth and developmental processes. Here we used various molecular and biochemical approaches to investigate artificial and normal gravistimulation's effect on the early growth stages of rice (Oryza sativa L.) by changing the orientations of Petri dishes. Rate of amino acid formation, root and shoot growth, and OsPIN expression was significantly higher under gravistimulation compared with the control. Clinostat rotation positively affected plant growth and amino acid profile. However, under normal gravity, vertical-oriented seedlings showed high amino acid levels compared with clinostat, 90°-rotated, and control seedlings. Similarly, seedling growth significantly increased with 90°-rotated and vertical orientations. Artificial gravity and exogenous indole-3-acetic acid induced OsPIN1 expression in the roots, root shoot junction, and shoots of clinorotated seedlings. Phenyl acetic acid induced OsPIN1 expression in the roots and root shoot junction of clinorotated seedlings but not in the shoot. The current study suggests that OsPIN1 is differentially regulated and that it might be involved in the regulation of plant growth. Conversely, OsPIN2 and OsPIN3a are gravity sensors and highly induced in the roots and root shoot junctions of vertical and 90°-rotated seedlings and play an important role in stress conditions. Thus, on exposure to gravity, hormones, and UV-C radiation, these genes are highly regulated by jasmonic acid, 6-benzylaminopurine and gibberellic acid.
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Affiliation(s)
- Muhammad Farooq
- School of Applied Bioscience, Kyungpook National University, Daegu, 41566, Republic of Korea
| | - Rahmatullah Jan
- School of Applied Bioscience, Kyungpook National University, Daegu, 41566, Republic of Korea
| | - Kyung-Min Kim
- School of Applied Bioscience, Kyungpook National University, Daegu, 41566, Republic of Korea.
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23
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Huang X, Bai X, Guo T, Xie Z, Laimer M, Du D, Gbokie T, Zhang Z, He C, Lu Y, Wu W, Yi K. Genome-Wide Analysis of the PIN Auxin Efflux Carrier Gene Family in Coffee. PLANTS 2020; 9:plants9091061. [PMID: 32825074 PMCID: PMC7570243 DOI: 10.3390/plants9091061] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 08/18/2020] [Accepted: 08/18/2020] [Indexed: 11/23/2022]
Abstract
Coffee is one of the most popular beverages around the world, which is mainly produced from the allopolyploid Coffea arabica. The genomes of C. arabica and its two ancestors C. canephora and C. eugenioides have been released due to the development of next generation sequencing. However, few studies on C. arabica are related to the PIN-FORMED (PIN) auxin efflux transporter despite its importance in auxin-mediated plant growth and development. In the present study, we conducted a genome-wide analysis of the PIN gene family in the three coffee species. Totals of 17, 9 and 10 of the PIN members were characterized in C. Arabica, C. canephora and C. eugenioides, respectively. Phylogenetic analysis revealed gene loss of PIN1 and PIN2 homologs in C. arabica, as well as gene duplication of PIN5 homologs during the fractionation process after tetraploidy. Furthermore, we conducted expression analysis of PIN genes in C. arabica by in silico and qRT-PCR. The results revealed the existence of gene expression dominance in allopolyploid coffee and illustrated several PIN candidates in regulating auxin transport and homeostasis under leaf rust fungus inoculation and the tissue-specific expression pattern of C. arabica. Together, this study provides the basis and guideline for future functional characterization of the PIN gene family.
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Affiliation(s)
- Xing Huang
- Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China; (X.H.); (C.H.); (Y.L.); (K.Y.)
- Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China
- Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China
| | - Xuehui Bai
- Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600, China; (X.B.); (T.G.)
| | - Tieying Guo
- Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600, China; (X.B.); (T.G.)
| | - Zhouli Xie
- School of Life Sciences, Peking University, Beijing 100871, China;
| | - Margit Laimer
- Plant Biotechnology Unit, Department of Biotechnology, BOKU-VIBT, University of Natural Resources and Life Sciences, Vienna 1190, Austria
- Correspondence: (M.L.); (W.W.)
| | - Dengxiang Du
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China;
| | - Thomas Gbokie
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China;
| | - Zhirun Zhang
- Coffee Engineering Research Center of China, Mangshi 678400, China;
| | - Chunping He
- Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China; (X.H.); (C.H.); (Y.L.); (K.Y.)
- Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China
- Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China
| | - Ying Lu
- Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China; (X.H.); (C.H.); (Y.L.); (K.Y.)
- Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China
- Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China
| | - Weihuai Wu
- Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China; (X.H.); (C.H.); (Y.L.); (K.Y.)
- Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China
- Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China
- Correspondence: (M.L.); (W.W.)
| | - Kexian Yi
- Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China; (X.H.); (C.H.); (Y.L.); (K.Y.)
- Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China
- Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China
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24
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Jiménez-Vázquez KR, García-Cárdenas E, Barrera-Ortiz S, Ortiz-Castro R, Ruiz-Herrera LF, Ramos-Acosta BP, Coria-Arellano JL, Sáenz-Mata J, López-Bucio J. The plant beneficial rhizobacterium Achromobacter sp. 5B1 influences root development through auxin signaling and redistribution. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 103:1639-1654. [PMID: 32445404 DOI: 10.1111/tpj.14853] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 05/10/2020] [Accepted: 05/15/2020] [Indexed: 05/20/2023]
Abstract
Roots provide physical and nutritional support to plant organs that are above ground and play critical roles for adaptation via intricate movements and growth patterns. Through screening the effects of bacterial isolates from roots of halophyte Mesquite (Prosopis sp.) on Arabidopsis thaliana, we identified Achromobacter sp. 5B1 as a probiotic bacterium that influences plant functional traits. Detailed genetic and architectural analyses in Arabidopsis grown in vitro and in soil, cell division measurements, auxin transport and response gene expression and brefeldin A treatments demonstrated that root colonization with Achromobacter sp. 5B1 changes the growth and branching patterns of roots, which were related to auxin perception and redistribution. Expression analysis of auxin transport and signaling revealed a redistribution of auxin within the primary root tip of wild-type seedlings by Achromobacter sp. 5B1 that is disrupted by brefeldin A and correlates with repression of auxin transporters PIN1 and PIN7 in root provasculature, and PIN2 in the epidermis and cortex of the root tip, whereas expression of PIN3 was enhanced in the columella. In seedlings harboring AUX1, EIR1, AXR1, ARF7ARF19, TIR1AFB2AFB3 single, double or triple loss-of-function mutations, or in a dominant (gain-of-function) mutant of SLR1, the bacterium caused primary roots to form supercoils that are devoid of lateral roots. The changes in growth and root architecture elicited by the bacterium helped Arabidopsis seedlings to resist salt stress better. Thus, Achromobacter sp. 5B1 fine tunes both root movements and the auxin response, which may be important for plant growth and environmental adaptation.
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Affiliation(s)
- Kirán R Jiménez-Vázquez
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, Morelia, Michoacán, C. P. 58030, México
| | - Elizabeth García-Cárdenas
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, Morelia, Michoacán, C. P. 58030, México
| | - Salvador Barrera-Ortiz
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, Morelia, Michoacán, C. P. 58030, México
| | - Randy Ortiz-Castro
- Red de Estudios Moleculares Avanzados, Instituto de Ecología A. C., Carretera Antigua a Coatepec 351 El Haya, Xalapa, Veracruz, 91070, México
| | - León F Ruiz-Herrera
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, Morelia, Michoacán, C. P. 58030, México
| | - Blanca P Ramos-Acosta
- Facultad de Ciencias Biológicas, Universidad Juárez del Estado de Durango, Av. Universidad S/N, Frac. Filadelfia, Gómez Palacio, Durango, C.P. 35010, México
| | - Jessica L Coria-Arellano
- Facultad de Ciencias Biológicas, Universidad Juárez del Estado de Durango, Av. Universidad S/N, Frac. Filadelfia, Gómez Palacio, Durango, C.P. 35010, México
| | - Jorge Sáenz-Mata
- Facultad de Ciencias Biológicas, Universidad Juárez del Estado de Durango, Av. Universidad S/N, Frac. Filadelfia, Gómez Palacio, Durango, C.P. 35010, México
| | - José López-Bucio
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, Morelia, Michoacán, C. P. 58030, México
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25
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Ashraf MA, Umetsu K, Ponomarenko O, Saito M, Aslam M, Antipova O, Dolgova N, Kiani CD, Nehzati S, Tanoi K, Minegishi K, Nagatsu K, Kamiya T, Fujiwara T, Luschnig C, Tanino K, Pickering I, George GN, Rahman A. PIN FORMED 2 Modulates the Transport of Arsenite in Arabidopsis thaliana. PLANT COMMUNICATIONS 2020; 1:100009. [PMID: 33404549 PMCID: PMC7747963 DOI: 10.1016/j.xplc.2019.100009] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2019] [Revised: 10/15/2019] [Accepted: 11/18/2019] [Indexed: 05/23/2023]
Abstract
Arsenic contamination is a major environmental issue, as it may lead to serious health hazard. The reduced trivalent form of inorganic arsenic, arsenite, is in general more toxic to plants compared with the fully oxidized pentavalent arsenate. The uptake of arsenite in plants has been shown to be mediated through a large subfamily of plant aquaglyceroporins, nodulin 26-like intrinsic proteins (NIPs). However, the efflux mechanisms, as well as the mechanism of arsenite-induced root growth inhibition, remain poorly understood. Using molecular physiology, synchrotron imaging, and root transport assay approaches, we show that the cellular transport of trivalent arsenicals in Arabidopsis thaliana is strongly modulated by PIN FORMED 2 (PIN2) auxin efflux transporter. Root transport assay using radioactive arsenite, X-ray fluorescence imaging (XFI) coupled with X-ray absorption spectroscopy (XAS), and inductively coupled plasma mass spectrometry analysis revealed that pin2 plants accumulate higher concentrations of arsenite in roots compared with the wild-type. At the cellular level, arsenite specifically targets intracellular sorting of PIN2 and thereby alters the cellular auxin homeostasis. Consistently, loss of PIN2 function results in arsenite hypersensitivity in roots. XFI coupled with XAS further revealed that loss of PIN2 function results in specific accumulation of arsenical species, but not the other metals such as iron, zinc, or calcium in the root tip. Collectively, these results suggest that PIN2 likely functions as an arsenite efflux transporter for the distribution of arsenical species in planta.
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Affiliation(s)
- Mohammad Arif Ashraf
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate, Japan
| | - Kana Umetsu
- Department of Plant Bio Sciences, Faculty of Agriculture, Iwate University, Morioka, Iwate, Japan
| | - Olena Ponomarenko
- Molecular and Environmental Science Research Group, Department of Geological Sciences, University of Saskatchewan, Saskatoon, SK, Canada
| | - Michiko Saito
- Department of Plant Bio Sciences, Faculty of Agriculture, Iwate University, Morioka, Iwate, Japan
| | - Mohammad Aslam
- Department of Plant Bio Sciences, Faculty of Agriculture, Iwate University, Morioka, Iwate, Japan
| | - Olga Antipova
- Argonne National Lab, Advanced Photon Source, XSD-MIC, Lemont, IL, USA
| | - Natalia Dolgova
- Molecular and Environmental Science Research Group, Department of Geological Sciences, University of Saskatchewan, Saskatoon, SK, Canada
| | - Cheyenne D. Kiani
- Molecular and Environmental Science Research Group, Department of Geological Sciences, University of Saskatchewan, Saskatoon, SK, Canada
| | - Susan Nehzati
- Molecular and Environmental Science Research Group, Department of Geological Sciences, University of Saskatchewan, Saskatoon, SK, Canada
| | - Keitaro Tanoi
- Isotope Facility for Agricultural Education and Research, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Katsuyuki Minegishi
- Department of Radiopharmaceuticals Development, National Institute of Radiological Sciences, National Institutes for Quantum and Radiological Science and Technology, Inage, Chiba, Japan
| | - Kotaro Nagatsu
- Department of Radiopharmaceuticals Development, National Institute of Radiological Sciences, National Institutes for Quantum and Radiological Science and Technology, Inage, Chiba, Japan
| | - Takehiro Kamiya
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Toru Fujiwara
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Christian Luschnig
- Department of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences, Vienna (BOKU), Muthgasse 18, 1180 Wien, Austria
| | - Karen Tanino
- Department of Plant Sciences, College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, SK, Canada
| | - Ingrid Pickering
- Molecular and Environmental Science Research Group, Department of Geological Sciences, University of Saskatchewan, Saskatoon, SK, Canada
| | - Graham N. George
- Molecular and Environmental Science Research Group, Department of Geological Sciences, University of Saskatchewan, Saskatoon, SK, Canada
| | - Abidur Rahman
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate, Japan
- Department of Plant Bio Sciences, Faculty of Agriculture, Iwate University, Morioka, Iwate, Japan
- Agri-Innovation Center, Iwate University, Morioka, Iwate, Japan
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26
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Mellor NL, Voß U, Janes G, Bennett MJ, Wells DM, Band LR. Auxin fluxes through plasmodesmata modify root-tip auxin distribution. Development 2020; 147:dev181669. [PMID: 32229613 PMCID: PMC7132777 DOI: 10.1242/dev.181669] [Citation(s) in RCA: 53] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Accepted: 02/17/2020] [Indexed: 01/05/2023]
Abstract
Auxin is a key signal regulating plant growth and development. It is well established that auxin dynamics depend on the spatial distribution of efflux and influx carriers on the cell membranes. In this study, we employ a systems approach to characterise an alternative symplastic pathway for auxin mobilisation via plasmodesmata, which function as intercellular pores linking the cytoplasm of adjacent cells. To investigate the role of plasmodesmata in auxin patterning, we developed a multicellular model of the Arabidopsis root tip. We tested the model predictions using the DII-VENUS auxin response reporter, comparing the predicted and observed DII-VENUS distributions using genetic and chemical perturbations designed to affect both carrier-mediated and plasmodesmatal auxin fluxes. The model revealed that carrier-mediated transport alone cannot explain the experimentally determined auxin distribution in the root tip. In contrast, a composite model that incorporates both carrier-mediated and plasmodesmatal auxin fluxes re-capitulates the root-tip auxin distribution. We found that auxin fluxes through plasmodesmata enable auxin reflux and increase total root-tip auxin. We conclude that auxin fluxes through plasmodesmata modify the auxin distribution created by efflux and influx carriers.
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Affiliation(s)
- Nathan L Mellor
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Ute Voß
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - George Janes
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Malcolm J Bennett
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Darren M Wells
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Leah R Band
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
- Centre for Mathematical Medicine and Biology, School of Mathematical Sciences, University of Nottingham, Nottingham NG7 2RD, UK
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27
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Zwiewka M, Bilanovičová V, Seifu YW, Nodzyński T. The Nuts and Bolts of PIN Auxin Efflux Carriers. FRONTIERS IN PLANT SCIENCE 2019; 10:985. [PMID: 31417597 PMCID: PMC6685051 DOI: 10.3389/fpls.2019.00985] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Accepted: 07/12/2019] [Indexed: 05/20/2023]
Abstract
The plant-specific proteins named PIN-FORMED (PIN) efflux carriers facilitate the direction of auxin flow and thus play a vital role in the establishment of local auxin maxima within plant tissues that subsequently guide plant ontogenesis. They are membrane integral proteins with two hydrophobic regions consisting of alpha-helices linked with a hydrophilic loop, which is usually longer for the plasma membrane-localized PINs. The hydrophilic loop harbors molecular cues important for the subcellular localization and thus auxin efflux function of those transporters. The three-dimensional structure of PIN has not been solved yet. However, there are scattered but substantial data concerning the functional characterization of amino acid strings that constitute these carriers. These sequences include motifs vital for vesicular trafficking, residues regulating membrane diffusion, cellular polar localization, and activity of PINs. Here, we summarize those bits of information striving to provide a reference to structural motifs that have been investigated experimentally hoping to stimulate the efforts toward unraveling of PIN structure-function connections.
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Affiliation(s)
| | | | | | - Tomasz Nodzyński
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Brno, Czechia
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28
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Park YJ, Lee HJ, Gil KE, Kim JY, Lee JH, Lee H, Cho HT, Vu LD, De Smet I, Park CM. Developmental Programming of Thermonastic Leaf Movement. PLANT PHYSIOLOGY 2019; 180:1185-1197. [PMID: 30948554 PMCID: PMC6548248 DOI: 10.1104/pp.19.00139] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Accepted: 04/01/2019] [Indexed: 05/19/2023]
Abstract
Plants exhibit diverse polar behaviors in response to directional and nondirectional environmental signals, termed tropic and nastic movements, respectively. The ways in which plants incorporate directional information into tropic behaviors is well understood, but it is less well understood how nondirectional stimuli, such as ambient temperatures, specify the polarity of nastic behaviors. Here, we demonstrate that a developmentally programmed polarity of auxin flow underlies thermo-induced leaf hyponasty in Arabidopsis (Arabidopsis thaliana). In warm environments, PHYTOCHROME-INTERACTING FACTOR4 (PIF4) stimulates auxin production in the leaf. This results in the accumulation of auxin in leaf petioles, where PIF4 directly activates a gene encoding the PINOID (PID) protein kinase. PID is involved in polarization of the auxin transporter PIN-FORMED3 to the outer membranes of petiole cells. Notably, the leaf polarity-determining ASYMMETRIC LEAVES1 (AS1) directs the induction of PID to occur predominantly in the abaxial petiole region. These observations indicate that the integration of PIF4-mediated auxin biosynthesis and polar transport, and the AS1-mediated developmental shaping of polar auxin flow, coordinate leaf thermonasty, which facilitates leaf cooling in warm environments. We believe that leaf thermonasty is a suitable model system for studying the developmental programming of environmental adaptation in plants.
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Affiliation(s)
- Young-Joon Park
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
| | - Hyo-Jun Lee
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
| | - Kyung-Eun Gil
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
| | - Jae Young Kim
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
| | - June-Hee Lee
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
| | - Hyodong Lee
- Department of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Hyung-Taeg Cho
- Department of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Lam Dai Vu
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, B-9052 Ghent, Belgium
- Department of Biomolecular Medicine, Ghent University, B-9000 Ghent, Belgium
- VIB Center for Medical Biotechnology, B-9000 Ghent, Belgium
| | - Ive De Smet
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, B-9052 Ghent, Belgium
| | - Chung-Mo Park
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
- Plant Genomics and Breeding Institute, Seoul National University, Seoul 08826, Korea
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29
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Gao J, Yu M, Zhu S, Zhou L, Liu S. Effects of exogenous 24-epibrassinolide and brassinazole on negative gravitropism and tension wood formation in hybrid poplar (Populus deltoids × Populus nigra). PLANTA 2019; 249:1449-1463. [PMID: 30689054 DOI: 10.1007/s00425-018-03074-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2018] [Accepted: 12/19/2018] [Indexed: 06/09/2023]
Abstract
Exogenous 24-epibrassinolide (BL) and brassinazole (BRZ) have regulatory roles in G-fiber cell wall development and secondary xylem cell wall carbohydrate biosynthesis during tension wood formation in hybrid poplar. Brassinosteroids (BRs) play important roles in regulating gravitropism and vasculature development. Here, we report the effect of brassinosteroids on negative gravitropism and G-fiber cell wall development of the stem in woody angiosperms. We applied exogenous 24-epibrassinolide (BL) or its biosynthesis inhibitor brassinazole (BRZ) to slanted hybrid poplar trees (Populus deltoids × Populus nigra) and measured the morphology of gravitropic stems, anatomy and chemistry of secondary cell wall. We furthermore analyzed the expression levels of auxin transport and cellulose biosynthetic genes after 24-epibrassinolide (BL) or brassinazole (BRZ) application. The BL-treated seedlings showed no negative gravitropism bending, whereas application of BRZ dramatically enhanced negative gravitropic bending. BL treatment stimulated secondary xylem fiber elongation and G-fiber formation on the upper side of stems but delayed G-fiber maturation. BRZ inhibited xylem fiber elongation but induced the production of more mature G-fibers on the upper side of stems. Wood chemistry analyses and immunolocalization demonstrated that BL and BRZ treatments increased the cellulose content and modified the deposition of cell wall carbohydrates including arabinose, galactose and rhamnose in the secondary xylem. The expression of cellulose biosynthetic genes, especially those related to cellulose microfibril deposition (PtFLA12 and PtCOBL4) was significantly upregulated in BL- and BRZ-treated TW stems compared with control stems. The significant differences of G-fibers development and negative gravitropism bending between 24-epibrassinolide (BL) and brassinazole (BRZ) application suggest that brassinosteroids are important for secondary xylem development during tension wood formation. Our findings provide potential insights into the mechanism by which BRs regulate G-fiber cell wall development to accomplish negative gravitropism in TW formation.
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Affiliation(s)
- Junlan Gao
- School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
| | - Min Yu
- School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
| | - Shiliu Zhu
- School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
| | - Liang Zhou
- School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
| | - Shengquan Liu
- School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China.
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Ashraf MA, Rahman A. Cold stress response in Arabidopsis thaliana is mediated by GNOM ARF-GEF. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 97:500-516. [PMID: 30362633 DOI: 10.1111/tpj.14137] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Revised: 10/14/2018] [Accepted: 10/16/2018] [Indexed: 05/29/2023]
Abstract
Endosomal trafficking plays an important role in regulating plant growth and development both at optimal and stressed conditions. Cold stress response in Arabidopsis root is directly linked to inhibition of the endosomal trafficking of auxin efflux carriers. However, the cellular components that link cold stress and the endosomal trafficking remain elusive. By screening available endosomal trafficking mutants against root growth recovery response under cold stress, we identified GNOM, a SEC7 containing ARF-GEF, as a major modulator of cold response. Contrasting response of partial loss of function mutant gnomB4049/emb30-1 and the engineered Brefeldin A (BFA)-resistant GNOM line, both of which contain mutations within SEC7 domain, to cold stress at the whole-plant level highlights the importance of this domain in modulating the cold response pathway of plants. Cold stress selectively and transiently inhibits GNOM expression. The engineered point mutation at 696 amino acid position (Methionine to Leucine) that makes GNOM resistant to BFA in fact results in overexpression of GNOM both at transcriptional and translational levels, and also alters its subcellular localization. Overexpression and altered cellular localization of GNOM were found to be directly linked to conferring striking cold-resistant phenotype in Arabidopsis. Collectively, these results provide a mechanistic link between GNOM, BFA-sensitive GNOM-regulated trafficking and cold stress.
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Affiliation(s)
- Mohammad A Ashraf
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, 020-8550, Japan
| | - Abidur Rahman
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, 020-8550, Japan
- Department of Plant Bio Sciences, Faculty of Agriculture, Iwate University, Morioka, 020-8550, Japan
- Agro-Innovation Center, Iwate University, Morioka, Japan
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31
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Dissecting Heterosis During the Ear Inflorescence Development Stage in Maize via a Metabolomics-based Analysis. Sci Rep 2019; 9:212. [PMID: 30659214 PMCID: PMC6338801 DOI: 10.1038/s41598-018-36446-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2018] [Accepted: 11/13/2018] [Indexed: 11/08/2022] Open
Abstract
Heterosis can increase the yield of many crops and has been extensively applied in agriculture. In maize, female inflorescence architecture directly determines grain yield. Thus, exploring the relationship between early maize ear inflorescence development and heterosis regarding yield-related traits may be helpful for characterizing the molecular mechanisms underlying heterotic performance. In this study, we fine mapped the overdominant heterotic locus (hlEW2b), associated with ear width, in an approximately 1.98-Mb region based on analyses of chromosome segment substitution lines and the corresponding testcross population. Maize ear inflorescences at the floral meristem stage were collected from two inbred lines, one chromosome segment substitution line that carried hlEW2b (sub-CSSL16), the receptor parent lx9801, and the Zheng58 × sub-CSSL16 and Zheng58 × lx9801 hybrid lines. A total of 256 metabolites were identified, including 31 and 24 metabolites that were differentially accumulated between the two hybrid lines and between the two inbred lines, respectively. Most of these metabolites are involved in complex regulatory mechanisms important for maize ear development. For example, nucleotides are basic metabolites affecting cell composition and carbohydrate synthesis. Additionally, nicotinate and nicotinamide metabolism is important for photosynthesis, plant stress responses, and cell expansion. Moreover, flavonoid and phenolic metabolites regulate auxin transport and cell apoptosis. Meanwhile, phytohormone biosynthesis and distribution influence the cell cycle and cell proliferation. Our results revealed that changes in metabolite contents may affect the heterotic performance related to ear width and yield in maize hybrid lines. This study provides new clues in heterosis at the metabolomics level and implies that differentially accumulated metabolites made distinct contributions to the heterosis at an early stage of ear inflorescences development.
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32
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Sańko-Sawczenko I, Dmitruk D, Łotocka B, Różańska E, Czarnocka W. Expression Analysis of PIN Genes in Root Tips and Nodules of Lotus japonicus. Int J Mol Sci 2019; 20:E235. [PMID: 30634426 PMCID: PMC6359356 DOI: 10.3390/ijms20020235] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Revised: 12/31/2018] [Accepted: 01/04/2019] [Indexed: 02/02/2023] Open
Abstract
Auxins are postulated to be one of the pivotal factors in nodulation. However, their transporters in Lotus japonicus, the model species for the study of the development of determinate-type root nodules, have been scarcely described so far, and thus their role in nodulation has remained unknown. Our research is the first focusing on polar auxin transporters in L. japonicus. We analyzed and compared expression of PINs in 20 days post rhizobial inoculation (dpi) and 54 dpi root nodules of L. japonicus by real-time quantitative polymerase chain reaction (qPCR) along with the histochemical β-glucuronidase (GUS) reporter gene assay in transgenic hairy roots. The results indicate that LjPINs are essential during root nodule development since they are predominantly expressed in the primordia and young, developing nodules. However, along with differentiation, expression levels of several PINs decreased and occurred particularly in the nodule vascular bundles, especially in connection with the root's stele. Moreover, our study demonstrated the importance of both polar auxin transport and auxin intracellular homeostasis during L. japonicus root nodule development and differentiation.
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Affiliation(s)
- Izabela Sańko-Sawczenko
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland.
| | - Dominika Dmitruk
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland.
| | - Barbara Łotocka
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland.
| | - Elżbieta Różańska
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland.
| | - Weronika Czarnocka
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland.
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33
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Swarup R, Bhosale R. Developmental Roles of AUX1/LAX Auxin Influx Carriers in Plants. FRONTIERS IN PLANT SCIENCE 2019; 10:1306. [PMID: 31719828 PMCID: PMC6827439 DOI: 10.3389/fpls.2019.01306] [Citation(s) in RCA: 90] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Accepted: 09/19/2019] [Indexed: 05/06/2023]
Abstract
Plant hormone auxin regulates several aspects of plant growth and development. Auxin is predominantly synthesized in the shoot apex and developing leaf primordia and from there it is transported to the target tissues e.g. roots. Auxin transport is polar in nature and is carrier-mediated. AUXIN1/LIKE-AUX1 (AUX1/LAX) family members are the major auxin influx carriers whereas PIN-FORMED (PIN) family and some members of the P-GLYCOPROTEIN/ATP-BINDING CASSETTE B4 (PGP/ABCB) family are major auxin efflux carriers. AUX1/LAX auxin influx carriers are multi-membrane spanning transmembrane proteins sharing similarity to amino acid permeases. Mutations in AUX1/LAX genes result in auxin related developmental defects and have been implicated in regulating key plant processes including root and lateral root development, root gravitropism, root hair development, vascular patterning, seed germination, apical hook formation, leaf morphogenesis, phyllotactic patterning, female gametophyte development and embryo development. Recently AUX1 has also been implicated in regulating plant responses to abiotic stresses. This review summarizes our current understanding of the developmental roles of AUX1/LAX gene family and will also briefly discuss the modelling approaches that are providing new insight into the role of auxin transport in plant development.
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Affiliation(s)
- Ranjan Swarup
- Plant and Crop Sciences, School of Biosciences, University of Nottingham, Nottingham, United Kingdom
- Center for Plant Integrative Biology (CPIB), University of Nottingham, Nottingham, United Kingdom
- *Correspondence: Ranjan Swarup,
| | - Rahul Bhosale
- Plant and Crop Sciences, School of Biosciences, University of Nottingham, Nottingham, United Kingdom
- Center for Plant Integrative Biology (CPIB), University of Nottingham, Nottingham, United Kingdom
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34
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Dong Q, Zhang Z, Liu Y, Tao LZ, Liu H. FERONIA regulates auxin-mediated lateral root development and primary root gravitropism. FEBS Lett 2018; 593:97-106. [PMID: 30417333 DOI: 10.1002/1873-3468.13292] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2018] [Revised: 11/02/2018] [Accepted: 11/05/2018] [Indexed: 12/23/2022]
Abstract
The Arabidopsis FERONIA (FER) receptor kinase is a key hub of cell signaling networks mediating various hormone, stress, and immune responses. Previous studies have shown that FER functions correlate with auxin responses, but the underlying molecular mechanism is unknown. Here, we demonstrate that the primary root of the fer-4 mutant displays increased lateral root branching and a delayed gravitropic response, which are associated with polar auxin transport (PAT). Our data suggest that aberrant PIN2 polarity is responsible for the delayed gravitropic response in fer-4. Furthermore, the diminished F-actin cytoskeleton in fer-4 implies that FER modulates F-actin-mediated PIN2 polar localization. Our findings provide new insights into the function of FER in PAT.
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Affiliation(s)
- QingKun Dong
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China.,Guangdong Provincial Key Laboratory of Protein Function and Regulation in Agricultural Organisms, College of Life Sciences, South China Agricultural University, Guangzhou, China
| | - ZhiWei Zhang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China.,Guangdong Provincial Key Laboratory of Protein Function and Regulation in Agricultural Organisms, College of Life Sciences, South China Agricultural University, Guangzhou, China
| | - YuTing Liu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China.,Guangdong Provincial Key Laboratory of Protein Function and Regulation in Agricultural Organisms, College of Life Sciences, South China Agricultural University, Guangzhou, China
| | - Li-Zhen Tao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China.,Guangdong Provincial Key Laboratory of Protein Function and Regulation in Agricultural Organisms, College of Life Sciences, South China Agricultural University, Guangzhou, China
| | - HuiLi Liu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China.,Guangdong Provincial Key Laboratory of Protein Function and Regulation in Agricultural Organisms, College of Life Sciences, South China Agricultural University, Guangzhou, China
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35
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Liu H, Liu B, Chen X, Zhu H, Zou C, Men S. AUX1 acts upstream of PIN2 in regulating root gravitropism. Biochem Biophys Res Commun 2018; 507:433-436. [PMID: 30449597 DOI: 10.1016/j.bbrc.2018.11.056] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2018] [Accepted: 11/10/2018] [Indexed: 11/24/2022]
Abstract
AUX1 and PIN2 auxin transporter are required for the asymmetric distribution of auxin for root gravitropic response. However, the relationship between AUX1 and PIN2 in root gravitropism is unclear. Here, we report that aux1-T mutant show stronger defects in root gravitropism than pin2-T, and aux1-T pin2-T double mutants display similar agravitropic phenotype to aux1-T. The gravity-induced asymmetric distribution of auxin responses could not be established in pin2-T, aux1-T and aux1-T pin2-T mutants; whereas aux1-T pin2-T double mutants showed similar auxin responses to aux1-T mutant. These findings support AUX1 plays a role in root gravitropism upstream of PIN2.
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Affiliation(s)
- Huabin Liu
- Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, Tianjin, 300071, China
| | - Bing Liu
- Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, Tianjin, 300071, China
| | - Xiaolei Chen
- Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, Tianjin, 300071, China
| | - Hui Zhu
- Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, Tianjin, 300071, China
| | - Chunxue Zou
- Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, Tianjin, 300071, China
| | - Shuzhen Men
- Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, Tianjin, 300071, China.
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36
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Zhou JJ, Luo J. The PIN-FORMED Auxin Efflux Carriers in Plants. Int J Mol Sci 2018; 19:E2759. [PMID: 30223430 PMCID: PMC6164769 DOI: 10.3390/ijms19092759] [Citation(s) in RCA: 80] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Revised: 09/11/2018] [Accepted: 09/12/2018] [Indexed: 12/14/2022] Open
Abstract
Auxin plays crucial roles in multiple developmental processes, such as embryogenesis, organogenesis, cell determination and division, as well as tropic responses. These processes are finely coordinated by the auxin, which requires the polar distribution of auxin within tissues and cells. The intercellular directionality of auxin flow is closely related to the asymmetric subcellular location of PIN-FORMED (PIN) auxin efflux transporters. All PIN proteins have a conserved structure with a central hydrophilic loop domain, which harbors several phosphosites targeted by a set of protein kinases. The activities of PIN proteins are finely regulated by diverse endogenous and exogenous stimuli at multiple layers-including transcriptional and epigenetic levels, post-transcriptional modifications, subcellular trafficking, as well as PINs' recycling and turnover-to facilitate the developmental processes in an auxin gradient-dependent manner. Here, the recent advances in the structure, evolution, regulation and functions of PIN proteins in plants will be discussed. The information provided by this review will shed new light on the asymmetric auxin-distribution-dependent development processes mediated by PIN transporters in plants.
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Affiliation(s)
- Jing-Jing Zhou
- College of Horticulture and Forestry Science, Hubei Engineering Technology Research Center for Forestry Information, Huazhong Agricultural University, Wuhan 430070, China.
| | - Jie Luo
- College of Horticulture and Forestry Science, Hubei Engineering Technology Research Center for Forestry Information, Huazhong Agricultural University, Wuhan 430070, China.
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37
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Resistance from agar medium impacts the helical growth of Arabidopsis primary roots. J Mech Behav Biomed Mater 2018; 85:43-50. [PMID: 29852351 DOI: 10.1016/j.jmbbm.2018.05.018] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2016] [Revised: 01/31/2017] [Accepted: 05/09/2018] [Indexed: 10/14/2022]
Abstract
Agar is widely used in studies of root growth since it can be mixed at different concentrations to impact mechanical impedance. At high concentrations (1.2-1.5%), growth of Arabidopsis roots has been found to be wavy, but little research has explored this behavior based on a quantitative understanding of mechanical behavior. To this end, agar media with concentration ranging from 0.5% to 1.2% were prepared to produce gradient resistance during root penetration, and Young's moduli and penetrometer resistance were tested. Arabidopsis roots were then cultivated in these agar media with gradient stiffness. The result showed that Young's modulus increased linearly with the increase of concentration of agar media. For Arabidopsis primary roots, it was preferred to develop a helical pattern in agar media with concentration from 0.5% to 1.0%. As stiffness of agar increased, the percentage of helical roots and helix diameters in each agar medium declined; root lengths and auxin distributions showed variety. We demonstrate that the size of helical deformation decreases with agar stiffness as expected by theoretical analysis based on a combination of growth-induced mechanical buckling. In conclusion, the resistance from agar media impacts the properties of root helix, and helical roots growth is driven by growth force. Growth force and external mechanical forces contribute to root phenotypes in Arabidopsis.
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38
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Dietrich D. Hydrotropism: how roots search for water. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:2759-2771. [PMID: 29529239 DOI: 10.1093/jxb/ery034] [Citation(s) in RCA: 64] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Accepted: 01/18/2018] [Indexed: 05/25/2023]
Abstract
Fresh water is an increasingly scarce resource for agriculture. Plant roots mediate water uptake from the soil and have developed a number of adaptive traits such as hydrotropism to aid water foraging. Hydrotropism modifies root growth to respond to a water potential gradient in soil and grow towards areas with a higher moisture content. Abscisic acid (ABA) and a small number of genes, including those encoding ABA signal transducers, MIZ2/GNOM, and the hydrotropism-specific MIZ1, are known to be necessary for the response in Arabidopsis thaliana, whereas the role of auxin in hydrotropism appears to vary depending on the plant species. This review will describe recent progress characterizing the hormonal regulation of hydrotropism. Recent advances in identifying the sites of hydrotropic perception and response, together with its interaction with gravitropism, will also be discussed. Finally, I will describe putative mechanisms for perception of the water potential gradient and a potential role for hydrotropism in acclimatizing plants to drought conditions.
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Affiliation(s)
- Daniela Dietrich
- Centre for Plant Integrative Biology and Plant & Crop Sciences, School of Biosciences, University of Nottingham, Nottingham, UK
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39
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Kathare PK, Dharmasiri S, Dharmasiri N. SAUR53 regulates organ elongation and apical hook development in Arabidopsis. PLANT SIGNALING & BEHAVIOR 2018; 13:e1514896. [PMID: 30260266 PMCID: PMC6204813 DOI: 10.1080/15592324.2018.1514896] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
SAUR53 is a member of SAUR (Small Auxin-Up RNA) gene family of primary auxin responsive genes. In Arabidopsis, SAUR gene family is represented by 81 genes including two pseudogenes; however, the functions of most of these genes are not fully characterized yet. In the present study, we show that SAUR53 expresses throughout the plant and localizes to both plasma membrane and the nucleus. Unlike most other SAUR genes, expression of SAUR53 is not induced in response to auxin. Ectopic expression of SAUR53 results in the elongation of cells and organs, and also interferes with normal apical hook development by accelerating the hook maintenance phase. Moreover, root growth of SAUR53 overexpression seedlings is significantly insensitive to IAA and 2,4-D, while showing wild-type sensitivity to NAA, suggesting that elevated level of SAUR53 may interfere with normal auxin transport. Collectively, this study indicates that while SAUR53 positively regulates cell and organ elongation, it probably negatively regulates auxin transport in Arabidopsis.
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Affiliation(s)
- Praveen Kumar Kathare
- Department of Biology, Texas State University, San Marcos, TX, USA
- Department of Molecular Biosciences, University of Texas, Austin, TX, USA
| | | | - Nihal Dharmasiri
- Department of Biology, Texas State University, San Marcos, TX, USA
- CONTACT Nihal Dharmasiri ;
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40
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París R, Vazquez MM, Graziano M, Terrile MC, Miller ND, Spalding EP, Otegui MS, Casalongué CA. Distribution of Endogenous NO Regulates Early Gravitropic Response and PIN2 Localization in Arabidopsis Roots. FRONTIERS IN PLANT SCIENCE 2018; 9:495. [PMID: 29731760 PMCID: PMC5920048 DOI: 10.3389/fpls.2018.00495] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2017] [Accepted: 04/03/2018] [Indexed: 05/19/2023]
Abstract
High-resolution and automated image analysis of individual roots demonstrated that endogenous nitric oxide (NO) contribute significantly to gravitropism of Arabidopsis roots. Lowering of endogenous NO concentrations strongly reduced and even reversed gravitropism, resulting in upward bending, without affecting root growth rate. Notably, the asymmetric accumulation of NO along the upper and lower sides of roots correlated with a positive gravitropic response. Detection of NO by the specific DAF-FM DA fluorescent probe revealed that NO was higher at the lower side of horizontally-oriented roots returning to initial values 2 h after the onset of gravistimulation. We demonstrate that NO promotes plasma membrane re-localization of PIN2 in epidermal cells, which is required during the early root gravitropic response. The dynamic and asymmetric localization of both auxin and NO is critical to regulate auxin polar transport during gravitropism. Our results collectively suggest that, although auxin and NO crosstalk occurs at different levels of regulation, they converge in the regulation of PIN2 membrane trafficking in gravistimulated roots, supporting the notion that a temporally and spatially coordinated network of signal molecules could participate in the early phases of auxin polar transport during gravitropism.
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Affiliation(s)
- Ramiro París
- Instituto de Investigaciones Biológicas, UE Consejo Nacional de Investigaciones Científicas y Técnicas-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
- *Correspondence: Ramiro París
| | - María M. Vazquez
- Instituto de Investigaciones Biológicas, UE Consejo Nacional de Investigaciones Científicas y Técnicas-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
| | - Magdalena Graziano
- Instituto de Investigaciones Biológicas, UE Consejo Nacional de Investigaciones Científicas y Técnicas-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
| | - María C. Terrile
- Instituto de Investigaciones Biológicas, UE Consejo Nacional de Investigaciones Científicas y Técnicas-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
| | - Nathan D. Miller
- Department of Botany, University of Wisconsin, Madison, WI, United States
| | - Edgar P. Spalding
- Department of Botany, University of Wisconsin, Madison, WI, United States
| | - Marisa S. Otegui
- Laboratory of Cell and Molecular Biology, Departments of Botany and Genetics, University of Wisconsin, Madison, WI, United States
| | - Claudia A. Casalongué
- Instituto de Investigaciones Biológicas, UE Consejo Nacional de Investigaciones Científicas y Técnicas-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
- Claudia A. Casalongué
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41
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Sun J, Wang L, Li S, Yin L, Huang J, Chen C. Toxicity of silver nanoparticles to Arabidopsis: Inhibition of root gravitropism by interfering with auxin pathway. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2017; 36:2773-2780. [PMID: 28440569 DOI: 10.1002/etc.3833] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2016] [Revised: 02/03/2017] [Accepted: 04/24/2017] [Indexed: 05/25/2023]
Abstract
Impacts of polyvinylpyrrolidine-coated silver nanoparticles (AgNPs) on root gravitropism in Arabidopsis thaliana were investigated at the physiological, cellular, and molecular levels. Our results showed that AgNPs were taken up by the root and primarily localized at the cell wall and intercellular spaces. Root gravitropism was inhibited by exposure to AgNPs, and the inhibition in root gravitropism caused by exposure to AgNPs exhibited a dose-response relationship. Auxin accumulation was reduced in the root tips because of exposure to AgNPs. However, increased indole-3-acetic acid level could not rescue the inhibition of root gravitropism. Real-time polymerase chain reaction showed significant downregulation of expression of auxin receptor-related genes, which is the TIR1/AFB family of F-box proteins including AFB1, AFB2, AFB3, AFB5, and TIR1. Therefore, the present study suggests that AgNPs have toxicity to the model plant A. thaliana as shown by inhibition of root gravitropism along with a reduction in auxin accumulation and expression of auxin receptors. Environ Toxicol Chem 2017;36:2773-2780. © 2017 SETAC.
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Affiliation(s)
- Juzhi Sun
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Likai Wang
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Shuang Li
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Liyan Yin
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, Agricultural College, Hainan University, Haikou, China
| | - Jin Huang
- School of Chemistry and Chemical Engineering, Southwest University, Chongqing, China
| | - Chunli Chen
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China
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42
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Morohashi K, Okamoto M, Yamazaki C, Fujii N, Miyazawa Y, Kamada M, Kasahara H, Osada I, Shimazu T, Fusejima Y, Higashibata A, Yamazaki T, Ishioka N, Kobayashi A, Takahashi H. Gravitropism interferes with hydrotropism via counteracting auxin dynamics in cucumber roots: clinorotation and spaceflight experiments. THE NEW PHYTOLOGIST 2017; 215:1476-1489. [PMID: 28722158 DOI: 10.1111/nph.14689] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2016] [Accepted: 05/28/2017] [Indexed: 05/27/2023]
Abstract
Roots of land plants show gravitropism and hydrotropism in response to gravity and moisture gradients, respectively, for controlling their growth orientation. Gravitropism interferes with hydrotropism, although the mechanistic aspects are poorly understood. Here, we differentiated hydrotropism from gravitropism in cucumber roots by conducting clinorotation and spaceflight experiments. We also compared mechanisms regulating hydrotropism and auxin-regulated gravitropism. Clinorotated or microgravity (μG)-grown cucumber seedling roots hydrotropically bent toward wet substrate in the presence of moisture gradients, but they grew straight in the direction of normal gravitational force at the Earth's surface (1G) on the ground or centrifuge-generated 1G in space. The roots appeared to become hydrotropically more sensitive to moisture gradients under μG conditions in space. Auxin transport inhibitors significantly reduced the hydrotropic response of clinorotated seedling roots. The auxin efflux protein CsPIN5 was differentially expressed in roots of both clinorotated and μG-grown seedlings; with higher expression in the high-humidity (concave) side than the low-humidity (convex) side of hydrotropically responding roots. Our results suggest that roots become hydrotropically sensitive in μG, and CsPIN5-mediated auxin transport has an important role in inducing root hydrotropism. Thus, hydrotropic and gravitropic responses in cucumber roots may compete via differential auxin dynamics established in response to moisture gradients and gravity.
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Affiliation(s)
- Keita Morohashi
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, 980-8577, Japan
| | - Miki Okamoto
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, 980-8577, Japan
| | - Chiaki Yamazaki
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, 980-8577, Japan
- Japan Space Forum, 3-2-1 Kanda-Surugadai, Chiyoda-ku, Tokyo, 101-0062, Japan
| | - Nobuharu Fujii
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, 980-8577, Japan
| | - Yutaka Miyazawa
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, 980-8577, Japan
- Faculty of Science, Yamagata University, 1-4-12, Kojirakawa-machi, Yamagata, 990-8560, Japan
| | - Motoshi Kamada
- Advanced Engineering Services Co. Ltd, 1-6-1 Takezono, Tsukuba, 305-0032, Japan
| | - Haruo Kasahara
- Japan Manned Space Systems Co., 1-6-1 Otemachi, Chiyoda-ku, Tokyo, 100-0004, Japan
| | - Ikuko Osada
- Japan Manned Space Systems Co., 1-6-1 Otemachi, Chiyoda-ku, Tokyo, 100-0004, Japan
| | - Toru Shimazu
- Japan Space Forum, 3-2-1 Kanda-Surugadai, Chiyoda-ku, Tokyo, 101-0062, Japan
| | - Yasuo Fusejima
- Japan Space Forum, 3-2-1 Kanda-Surugadai, Chiyoda-ku, Tokyo, 101-0062, Japan
| | - Akira Higashibata
- JEM Utilization Center, Japan Aerospace Exploration Agency, 2-1-1 Sengen, Tsukuba, 305-8505, Japan
| | - Takashi Yamazaki
- Graduate School of Medicine, Teikyo University, 2-11-1 Kaga, Itabashi-ku, Tokyo, 173-8605, Japan
| | - Noriaki Ishioka
- Institute of Space and Astronautical Science, Japan Aerospace Exploration Agency, 3-1-1 Yoshinodai, Sagamihara, 252-5210, Japan
| | - Akie Kobayashi
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, 980-8577, Japan
| | - Hideyuki Takahashi
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, 980-8577, Japan
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Skrzypczak T, Krela R, Kwiatkowski W, Wadurkar S, Smoczyńska A, Wojtaszek P. Plant Science View on Biohybrid Development. Front Bioeng Biotechnol 2017; 5:46. [PMID: 28856135 PMCID: PMC5558049 DOI: 10.3389/fbioe.2017.00046] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2017] [Accepted: 07/24/2017] [Indexed: 01/07/2023] Open
Abstract
Biohybrid consists of a living organism or cell and at least one engineered component. Designing robot-plant biohybrids is a great challenge: it requires interdisciplinary reconsideration of capabilities intimate specific to the biology of plants. Envisioned advances should improve agricultural/horticultural/social practice and could open new directions in utilization of plants by humans. Proper biohybrid cooperation depends upon effective communication. During evolution, plants developed many ways to communicate with each other, with animals, and with microorganisms. The most notable examples are: the use of phytohormones, rapid long-distance signaling, gravity, and light perception. These processes can now be intentionally re-shaped to establish plant-robot communication. In this article, we focus on plants physiological and molecular processes that could be used in bio-hybrids. We show phototropism and biomechanics as promising ways of effective communication, resulting in an alteration in plant architecture, and discuss the specifics of plants anatomy, physiology and development with regards to the bio-hybrids. Moreover, we discuss ways how robots could influence plants growth and development and present aims, ideas, and realized projects of plant-robot biohybrids.
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Affiliation(s)
- Tomasz Skrzypczak
- Faculty of Biology, Department of Molecular and Cellular Biology, Adam Mickiewicz University in Poznań, Poznań, Poland
| | - Rafał Krela
- Faculty of Biology, Department of Molecular and Cellular Biology, Adam Mickiewicz University in Poznań, Poznań, Poland
| | - Wojciech Kwiatkowski
- Faculty of Biology, Department of Molecular and Cellular Biology, Adam Mickiewicz University in Poznań, Poznań, Poland
| | - Shraddha Wadurkar
- Faculty of Biology, Department of Molecular and Cellular Biology, Adam Mickiewicz University in Poznań, Poznań, Poland
| | - Aleksandra Smoczyńska
- Faculty of Biology, Department of Gene Expression, Adam Mickiewicz University in Poznań, Poznań, Poland
| | - Przemysław Wojtaszek
- Faculty of Biology, Department of Molecular and Cellular Biology, Adam Mickiewicz University in Poznań, Poznań, Poland
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Han EH, Petrella DP, Blakeslee JJ. 'Bending' models of halotropism: incorporating protein phosphatase 2A, ABCB transporters, and auxin metabolism. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:3071-3089. [PMID: 28899081 DOI: 10.1093/jxb/erx127] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Salt stress causes worldwide reductions in agricultural yields, a problem that is exacerbated by the depletion of global freshwater reserves and the use of contaminated or recycled water (i.e. effluent water). Additionally, salt stress can occur as cultivated areas are subjected to frequent rounds of irrigation followed by periods of moderate to severe evapotranspiration, which can result in the heterogeneous aggregation of salts in agricultural soils. Our understanding of the later stages of salt stress and the mechanisms by which salt is transported out of cells and roots has greatly improved over the last decade. The precise mechanisms by which plant roots perceive salt stress and translate this perception into adaptive, directional growth away from increased salt concentrations (i.e. halotropism), however, are not well understood. Here, we provide a review of the current knowledge surrounding the early responses to salt stress and the initiation of halotropism, including lipid signaling, protein phosphorylation cascades, and changes in auxin metabolism and/or transport. Current models of halotropism have focused on the role of PIN2- and PIN1-mediated auxin efflux in initiating and controlling halotropism. Recent studies, however, suggest that additional factors such as ABCB transporters, protein phosphatase 2A activity, and auxin metabolism should be included in the model of halotropic growth.
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Affiliation(s)
- Eun Hyang Han
- Department of Horticulture and Crop Science, The Ohio State University/OARDC, Wooster, OH, USA
| | - Dominic P Petrella
- Department of Horticulture and Crop Science, The Ohio State University/OARDC, Wooster, OH, USA
| | - Joshua J Blakeslee
- Department of Horticulture and Crop Science, OARDC Metabolite Analysis Cluster (OMAC), The Ohio State University/OARDC, Wooster, OH, USA
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Dietrich D, Pang L, Kobayashi A, Fozard JA, Boudolf V, Bhosale R, Antoni R, Nguyen T, Hiratsuka S, Fujii N, Miyazawa Y, Bae TW, Wells DM, Owen MR, Band LR, Dyson RJ, Jensen OE, King JR, Tracy SR, Sturrock CJ, Mooney SJ, Roberts JA, Bhalerao RP, Dinneny JR, Rodriguez PL, Nagatani A, Hosokawa Y, Baskin TI, Pridmore TP, De Veylder L, Takahashi H, Bennett MJ. Root hydrotropism is controlled via a cortex-specific growth mechanism. NATURE PLANTS 2017; 3:17057. [PMID: 28481327 DOI: 10.1038/nplants.2017.57] [Citation(s) in RCA: 142] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2016] [Accepted: 03/23/2017] [Indexed: 05/24/2023]
Abstract
Plants can acclimate by using tropisms to link the direction of growth to environmental conditions. Hydrotropism allows roots to forage for water, a process known to depend on abscisic acid (ABA) but whose molecular and cellular basis remains unclear. Here we show that hydrotropism still occurs in roots after laser ablation removed the meristem and root cap. Additionally, targeted expression studies reveal that hydrotropism depends on the ABA signalling kinase SnRK2.2 and the hydrotropism-specific MIZ1, both acting specifically in elongation zone cortical cells. Conversely, hydrotropism, but not gravitropism, is inhibited by preventing differential cell-length increases in the cortex, but not in other cell types. We conclude that root tropic responses to gravity and water are driven by distinct tissue-based mechanisms. In addition, unlike its role in root gravitropism, the elongation zone performs a dual function during a hydrotropic response, both sensing a water potential gradient and subsequently undergoing differential growth.
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Affiliation(s)
- Daniela Dietrich
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Plant &Crop Sciences, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, UK
| | - Lei Pang
- Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan
| | - Akie Kobayashi
- Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan
| | - John A Fozard
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
| | - Véronique Boudolf
- Department of Plant Biotechnology and Bioinformatics, Ghent University, (Technologiepark 927), 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, (Technologiepark 927), 9052 Ghent, Belgium
| | - Rahul Bhosale
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Plant &Crop Sciences, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, UK
- Department of Plant Biotechnology and Bioinformatics, Ghent University, (Technologiepark 927), 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, (Technologiepark 927), 9052 Ghent, Belgium
| | - Regina Antoni
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
| | - Tuan Nguyen
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- School of Computer Science, University of Nottingham, Nottingham NG8 1BB, UK
| | - Sotaro Hiratsuka
- Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan
| | - Nobuharu Fujii
- Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan
| | - Yutaka Miyazawa
- Faculty of Science, Yamagata University, Yamagata 990-8560, Japan
| | - Tae-Woong Bae
- Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan
| | - Darren M Wells
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Plant &Crop Sciences, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, UK
| | - Markus R Owen
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Centre for Mathematical Medicine &Biology, University of Nottingham, Nottingham NG7 2RD, UK
| | - Leah R Band
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Centre for Mathematical Medicine &Biology, University of Nottingham, Nottingham NG7 2RD, UK
| | - Rosemary J Dyson
- School of Mathematics, University of Birmingham, Birmingham B15 2TT, UK
| | - Oliver E Jensen
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- School of Mathematics, University of Manchester, Oxford Road, Manchester M13 9PL, UK
| | - John R King
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Centre for Mathematical Medicine &Biology, University of Nottingham, Nottingham NG7 2RD, UK
| | - Saoirse R Tracy
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Agricultural and Environmental Sciences, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, UK
| | - Craig J Sturrock
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Agricultural and Environmental Sciences, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, UK
| | - Sacha J Mooney
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Agricultural and Environmental Sciences, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, UK
| | - Jeremy A Roberts
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Plant &Crop Sciences, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, UK
| | - Rishikesh P Bhalerao
- Department of Forest Genetics and Plant Physiology, SLU, S-901 83 Umea, Sweden
- College of Science, KSU, Riyadh, Saudi Arabia
| | - José R Dinneny
- Department of Plant Biology, Carnegie Institution for Science, 260 Panama Street, Stanford, California 94305, USA
| | - Pedro L Rodriguez
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Akira Nagatani
- Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
| | - Yoichiroh Hosokawa
- Graduate School of Materials Science, Nara Institute of Science &Technology, Ikoma 630-0101, Japan
| | - Tobias I Baskin
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Biology Department, University of Massachusetts, Amherst, Massachusetts 01003-9297, USA
| | - Tony P Pridmore
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- School of Computer Science, University of Nottingham, Nottingham NG8 1BB, UK
| | - Lieven De Veylder
- Department of Plant Biotechnology and Bioinformatics, Ghent University, (Technologiepark 927), 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, (Technologiepark 927), 9052 Ghent, Belgium
| | - Hideyuki Takahashi
- Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan
| | - Malcolm J Bennett
- Centre for Plant Integrative Biology, University of Nottingham, Nottingham LE12 5RD, UK
- Plant &Crop Sciences, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, UK
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Kuhn BM, Nodzyński T, Errafi S, Bucher R, Gupta S, Aryal B, Dobrev P, Bigler L, Geisler M, Zažímalová E, Friml J, Ringli C. Flavonol-induced changes in PIN2 polarity and auxin transport in the Arabidopsis thaliana rol1-2 mutant require phosphatase activity. Sci Rep 2017; 7:41906. [PMID: 28165500 PMCID: PMC5292950 DOI: 10.1038/srep41906] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2016] [Accepted: 01/04/2017] [Indexed: 01/15/2023] Open
Abstract
The phytohormone auxin is a major determinant and regulatory component important for plant development. Auxin transport between cells is mediated by a complex system of transporters such as AUX1/LAX, PIN, and ABCB proteins, and their localization and activity is thought to be influenced by phosphatases and kinases. Flavonols have been shown to alter auxin transport activity and changes in flavonol accumulation in the Arabidopsis thaliana rol1-2 mutant cause defects in auxin transport and seedling development. A new mutation in ROOTS CURL IN NPA 1 (RCN1), encoding a regulatory subunit of the phosphatase PP2A, was found to suppress the growth defects of rol1-2 without changing the flavonol content. rol1-2 rcn1-3 double mutants show wild type-like auxin transport activity while levels of free auxin are not affected by rcn1-3. In the rol1-2 mutant, PIN2 shows a flavonol-induced basal-to-apical shift in polar localization which is reversed in the rol1-2 rcn1-3 to basal localization. In vivo analysis of PINOID action, a kinase known to influence PIN protein localization in a PP2A-antagonistic manner, revealed a negative impact of flavonols on PINOID activity. Together, these data suggest that flavonols affect auxin transport by modifying the antagonistic kinase/phosphatase equilibrium.
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Affiliation(s)
- Benjamin M Kuhn
- Institute of Plant and Microbial Biology, University of Zurich, Zurich Switzerland
| | - Tomasz Nodzyński
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic
| | - Sanae Errafi
- Institute of Plant and Microbial Biology, University of Zurich, Zurich Switzerland
| | - Rahel Bucher
- Institute of Chemistry, University of Zurich, Zurich, Switzerland
| | - Shibu Gupta
- Institute of Plant and Microbial Biology, University of Zurich, Zurich Switzerland
| | - Bibek Aryal
- Department of Biology - geislerLab, University of Fribourg, Fribourg, Switzerland
| | - Petre Dobrev
- Institute of Experimental Botany, Academy of Sciences of the Czech Republic, Prague, Czech Republic
| | - Laurent Bigler
- Institute of Chemistry, University of Zurich, Zurich, Switzerland
| | - Markus Geisler
- Department of Biology - geislerLab, University of Fribourg, Fribourg, Switzerland
| | - Eva Zažímalová
- Institute of Experimental Botany, Academy of Sciences of the Czech Republic, Prague, Czech Republic
| | - Jiří Friml
- Institute of Science and Technology Austria (IST Austria), Am Campus 1, 3400 Klosterneuburg, Austria
| | - Christoph Ringli
- Institute of Plant and Microbial Biology, University of Zurich, Zurich Switzerland
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Dynamic PIN-FORMED auxin efflux carrier phosphorylation at the plasma membrane controls auxin efflux-dependent growth. Proc Natl Acad Sci U S A 2017; 114:E887-E896. [PMID: 28096328 DOI: 10.1073/pnas.1614380114] [Citation(s) in RCA: 72] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Abstract
The directional distribution of the phytohormone auxin is essential for plant development. Directional auxin transport is mediated by the polarly distributed PIN-FORMED (PIN) auxin efflux carriers. We have previously shown that efficient PIN1-mediated auxin efflux requires activation through phosphorylation at the four serines S1-S4 in Arabidopsis thaliana The Brefeldin A (BFA)-sensitive D6 PROTEIN KINASE (D6PK) and the BFA-insensitive PINOID (PID) phosphorylate and activate PIN1 through phosphorylation at all four phosphosites. PID, but not D6PK, can also induce PIN1 polarity shifts, seemingly through phosphorylation at S1-S3. The differential effects of D6PK and PID on PIN1 polarity had so far been attributed to their differential phosphosite preference for the four PIN1 phosphosites. We have mapped PIN1 phosphorylation at S1-S4 in situ using phosphosite-specific antibodies. We detected phosphorylation at PIN1 phosphosites at the basal (rootward) as well as the apical (shootward) plasma membrane in different root cell types, in embryos, and shoot apical meristems. Thereby, PIN1 phosphorylation at all phosphosites generally followed the predominant PIN1 distribution but was not restricted to specific polar sides of the cells. PIN1 phosphorylation at the basal and apical plasma membrane was differentially sensitive to BFA treatments, suggesting the involvement of different protein kinases or trafficking mechanisms in PIN1 phosphorylation control. We conclude that phosphosite preferences are not sufficient to explain the differential effects of D6PK and PID on PIN1 polarity, and suggest that a more complex model is needed to explain the effects of PID.
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48
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Zhu R, Dong X, Hao W, Gao W, Zhang W, Xia S, Liu T, Shang Z. Heterotrimeric G Protein-Regulated Ca 2+ Influx and PIN2 Asymmetric Distribution Are Involved in Arabidopsis thaliana Roots' Avoidance Response to Extracellular ATP. FRONTIERS IN PLANT SCIENCE 2017; 8:1522. [PMID: 28919907 PMCID: PMC5585194 DOI: 10.3389/fpls.2017.01522] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2017] [Accepted: 08/18/2017] [Indexed: 05/04/2023]
Abstract
Extracellular ATP (eATP) has been reported to be involved in plant growth as a primary messenger in the apoplast. Here, roots of Arabidopsis thaliana seedlings growing in jointed medium bent upon contact with ATP-containing medium to keep away from eATP, showing a marked avoidance response. Roots responded similarly to ADP and bz-ATP but did not respond to AMP and GTP. The eATP avoidance response was reduced in loss-of-function mutants of heterotrimeric G protein α subunit (Gα) (gpa1-1 and gpa1-2) and enhanced in Gα-over-expression (OE) lines (wGα and cGα). Ethylenebis(oxyethylenenitrilo) tetraacetic acid (EGTA) and Gd3+ remarkably suppressed eATP-induced root bending. ATP-stimulated Ca2+ influx was impaired in Gα null mutants and increased in its OE lines. DR5-GFP and PIN2 were asymmetrically distributed in ATP-stimulated root tips, this effect was strongly suppressed by EGTA and diminished in Gα null mutants. In addition, some eATP-induced genes' expression was also impaired in Gα null mutants. Based on these results, we propose that heterotrimeric Gα-regulated Ca2+ influx and PIN2 distribution may be key signaling events in eATP sensing and avoidance response in Arabidopsis thaliana roots.
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49
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Zou JJ, Zheng ZY, Xue S, Li HH, Wang YR, Le J. The role of Arabidopsis Actin-Related Protein 3 in amyloplast sedimentation and polar auxin transport in root gravitropism. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:5325-5337. [PMID: 27473572 PMCID: PMC5049384 DOI: 10.1093/jxb/erw294] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Gravitropism is vital for shaping directional plant growth in response to the forces of gravity. Signals perceived in the gravity-sensing cells can be converted into biochemical signals and transmitted. Sedimentation of amyloplasts in the columella cells triggers asymmetric auxin redistribution in root tips, leading to downward root growth. The actin cytoskeleton is thought to play an important role in root gravitropism, although the molecular mechanism has not been resolved. DISTORTED1 (DIS1) encodes the ARP3 subunit of the Arabidopsis Actin-Related Protein 2/3 (ARP2/3) complex, and the ARP3/DIS1 mutant dis1-1 showed delayed root curvature after gravity stimulation. Microrheological analysis revealed that the high apparent viscosity within dis1-1 central columella cells is closely associated with abnormal movement trajectories of amyloplasts. Analysis using a sensitive auxin input reporter DII-VENUS showed that asymmetric auxin redistribution was reduced in the root tips of dis1-1, and the actin-disrupting drug Latrunculin B increased the asymmetric auxin redistribution. An uptake assay using the membrane-selective dye FM4-64 indicated that endocytosis was decelerated in dis1-1 root epidermal cells. Treatment and wash-out with Brefeldin A, which inhibits protein transport from the endoplasmic reticulum to the Golgi apparatus, showed that cycling of the auxin-transporter PIN-FORMED (PIN) proteins to the plasma membrane was also suppressed in dis1-1 roots. The results reveal that ARP3/DIS1 acts in root gravitropism by affecting amyloplast sedimentation and PIN-mediated polar auxin transport through regulation of PIN protein trafficking.
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Affiliation(s)
- Jun-Jie Zou
- Key Laboratory of Plant Molecular Physiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Zhong-Yu Zheng
- Key Laboratory of Microgravity, Institute of Mechanics, Chinese Academy of Sciences, Beijing 100190, China
| | - Shan Xue
- Key Laboratory of Plant Molecular Physiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Han-Hai Li
- Key Laboratory of Microgravity, Institute of Mechanics, Chinese Academy of Sciences, Beijing 100190, China
| | - Yu-Ren Wang
- Key Laboratory of Microgravity, Institute of Mechanics, Chinese Academy of Sciences, Beijing 100190, China
| | - Jie Le
- Key Laboratory of Plant Molecular Physiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
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50
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Enrichment of hydroxylated C24- and C26-acyl-chain sphingolipids mediates PIN2 apical sorting at trans-Golgi network subdomains. Nat Commun 2016; 7:12788. [PMID: 27681606 PMCID: PMC5056404 DOI: 10.1038/ncomms12788] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Accepted: 07/29/2016] [Indexed: 01/01/2023] Open
Abstract
The post-Golgi compartment trans-Golgi Network (TGN) is a central hub divided into multiple subdomains hosting distinct trafficking pathways, including polar delivery to apical membrane. Lipids such as sphingolipids and sterols have been implicated in polar trafficking from the TGN but the underlying mechanisms linking lipid composition to functional polar sorting at TGN subdomains remain unknown. Here we demonstrate that sphingolipids with α-hydroxylated acyl-chains of at least 24 carbon atoms are enriched in secretory vesicle subdomains of the TGN and are critical for de novo polar secretory sorting of the auxin carrier PIN2 to apical membrane of Arabidopsis root epithelial cells. We show that sphingolipid acyl-chain length influences the morphology and interconnections of TGN-associated secretory vesicles. Our results uncover that the sphingolipids acyl-chain length links lipid composition of TGN subdomains with polar secretory trafficking of PIN2 to apical membrane of polarized epithelial cells. Sphingolipids in the trans-Golgi network have been implicated in polar trafficking. Here Wattelet-Boyer et al. show that hydroxylated C24- and C26-acyl-chain sphingolipids are enriched in trans-Golgi network subdomains that are critical for polar sorting of the PIN2 auxin carrier in plant cells.
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