The origin of litter chemical complexity during decomposition

Initial microbiome and tree root status structured the soil microbial community discrepancy of the subtropical pine-oak forest in a large urban forest park

Plant-microbe-soil interactions control over the forest biogeochemical cycling. Adaptive plant-soil interactions can shape specific microbial taxa in determining the ecosystem functioning. Different trees produce heterogeneous soil properties and can alter the composition of soil microbial community, which is relevant to the forest internal succession containing contrasting stand types such as the pine-oak forests. Considering representative microbial community characteristics are recorded in the original soil where they had adapted and resided, we constructed a soil transplant incubation experiment in a series of in situ root-ingrowth cores in a subtropical pine-oak forest, to simulate the vegetational pine-oak replacement under environmental succession. The responsive bacterial and fungal community discrepancies were studied to determine whether and how they would be changed. The pine and oak forest stands had greater heterogeneity in fungi composition than bacteria. Original soil and specific tree root status were the main factors that determined microbial community structure. Internal association network characters and intergroup variations of fungi among soil samples were more affected by original soil, while bacteria were more affected by receiving forest. Specifically, dominant tree roots had strong influence in accelerating the fungi community succession to adapt with the surrounding forest. We concluded that soil microbial responses to forest stand alternation differed between microbiome groups, with fungi from their original forest possessing higher resistance to encounter a new vegetation stand, while the bacteria community have faster resilience. The data would advance our insight into local soil microbial community dynamics during ecosystem succession and be helpful to enlighten forest management.

Soil carbon-nutrient cycling, energetics, and carbon footprint in calcareous soils with adoption of long-term conservation tillage practices and cropping systems diversification

Calcareous soils, comprising vast areas in northern and eastern parts of India, are characterized by low soil organic carbon (SOC) with high free CaCO3 that results in low nutrient bioavailability with poor soil structure. Improvement of this soil can be achieved with conservation tillage with residue retention coupled with diversification of cropping system including legumes, and oilseeds in the system. Concerning all these, a long-term experiment was carried out in the calcareous soils having low organic carbon and high free CaCO3 (∼33 %) with varied tillage practices, viz. permanent bed with residue (PB), zero tillage with residue (ZT), and conventional tillage without residue (CT); and cropping systems viz. maize-wheat-greengram (MWGg), rice-maize (RM), and maize-mustard-greengram (MMuGg) during 2015-2021. From this study, it was observed that PB and ZT resulted in ∼25-30 % increment in SOC compared to the initial SOC, while CT showed a 4 % decrease in the SOC. Conservation tillage practices also resulted in better soil aggregation and favourable bulk density of the soil. Furthermore, PB and ZT practice exhibited 10-13 %; 15-18 %; 11-15 %; 40-60 %, 20-36 %, and 23-45 % increments in the soil available N, P, K, soil microbial biomass carbon, dehydrogenase activity, and urease activity, respectively over those under CT. Crop diversification with the inclusion of legume and oilseed crops (MMuGg, and MWGg) over cereal-dominated RM systems resulted in better soil health. Maize equivalent yield and energy use efficiency (%) were also found to be the maximum under PB, and ZT, in combination with the MMuGg system. ZT and PB also reduced the carbon footprint by 465 and 822 %, respectively over CT by elevating SOC sequestration. Hence, conservation tillage practices with residue retention coupled with diversification in maize-based cropping systems with mustard and greengram can improve soil health, system productivity, and energetics, and reduce the carbon footprint in calcareous soils.

Adaptive evaluation for agricultural sustainability of different fertilizer management options for a green manure-maize rotation system: Impacts on crop yield, soil biochemical properties and organic carbon fractions

Green manure planting can reduce the intensity of soil use, while improving farmland productivity in double-cropping systems. However, only few studies have focused on the impacts of green manure application under different fertilization management options on succeeding crop yield and soil organic carbon (SOC) process. A three-year field experiment was conducted with a winter smooth vetch-summer maize cropping system to evaluate the effects of green manure with different chemical fertilizers on soil physiochemical properties, SOC fraction, enzyme activities and maize yield. Total eight treatments were compared including different combinations of green manure and chemical fertilizers (i.e., nitrogen and phosphorus fertilizers) in the smooth vetch phase and maize phase. The results showed that compared to the control, green manure incorporation increased the soil moisture, total nitrogen, total phosphorus, basal respiration, SOC and its labile fractions, and enzyme activities, especially for the treatments of green manure with fertilization. However, the soil pH and bulk density decreased due to green manure application. Maize yield increased 34 %-53 % after green manure application, and was found to be significantly and positively correlated with soil carbon process (P < 0.05). Moreover, SOC and its labile fractions, and total nitrogen were observed as the main drivers of the maize yield. Variation partition analysis demonstrated that soil biochemical properties and their interaction with green manure by fertilization caused variations in SOC fractions. Further, structural equation models indicated that both balanced fertilization practices had positive effects on maize yield and soil carbon process via changes in SOC fractions and C cycling-related enzyme activities, respectively. In addition, the amount balance of chemical fertilizer positively impacted the soil carbon process by regulating SOC fractions through enzyme activities. These findings provide important guidance for applying optimal fertilization management in the green manure phase to improve succeeding crop yield and soil quality as well as to mitigate the adverse impacts of chemical fertilizers. The study will be equally illuminating for other green manure-crop rotation systems.

Deciphering Biotic and Abiotic Mechanisms Underlying Straw Decomposition and Soil Organic Carbon Priming in Agriculture Soils Receiving Long-Term Fertilizers

Straw-related carbon (C) dynamics are central for C accrual in agro-ecosystems and should be assessed by investigating their decomposition and soil organic carbon (SOC) priming effects. Our understanding of biotic and abiotic mechanisms underpinning these two C processes, however, is still not sufficiently profound. Soils that had received organic and mineral fertilizers for 26 years were sampled for a 28 day incubation experiment to assess 13C-labeled straw decomposition and SOC priming effects. On the basis of analyzing physicochemical properties, fungal taxonomic (MiSeq sequencing) and functional (metagenomics) guilds, we quantified the contributions of biotic and abiotic attributes to straw decomposition and SOC priming. Here, we propose two distinct mechanisms underlying straw decomposition and SOC priming in agriculture soils: (i) accelerated straw mineralization in manure-treated soils was mainly driven by biotic forces, while (ii) larger SOC priming in NPK-amended soils was through abiotic regulation.

Chemical differences in cover crop residue quality are maintained through litter decay

As plant litter decomposes, its mass exponentially decreases until it reaches a non-zero asymptote. However, decomposition rates vary considerably among litter types as a function of their overall quality (i.e., carbon:nitrogen (C:N) ratio and litter chemistry). We investigated the effects of hairy vetch (HV: Vicia villosa Roth):cereal rye (RYE: Secale cereale L.) biomass proportions with or without broadcasted poultry manure on overall litter quality before and during decomposition. As HV biomass proportions increased from 0 to 100%, the relative susceptibility of HV:RYE mixtures to microbial decomposition increased due to: (i) decrease in the initial C:N ratio (87:1 to 10:1 in 2012 and 67:1 to 9:1 in 2013), (ii) increase in the non-structural labile carbohydrates (33 to 61% across years), and (iii) decrease in the structural holo-cellulose (59 to 33% across years) and lignin (8 to 6% across years) fractions. Broadcasted poultry manure decreased the overall initial quality of HV-dominated litters and increased the overall initial quality of RYE-dominated litters. Across all HV:RYE biomass proportions with or without poultry manure, chemical changes during litter decay were related to proportional mass loss. Therefore, the relative decrease in carbohydrates and the concomitant increase in holo-cellulose and lignin fractions were more pronounced for fast decomposing litter types, i.e., litters dominated by HV rather than RYE. While our results suggest possible convergence of litter C:N ratios, initial differences in litter chemistry neither converged nor diverged. Therefore, we conclude that the initial chemistry of litter before decomposition exerts a strong control on its chemical composition throughout the decay continuum.

Microbial keystone taxa drive succession of plant residue chemistry

Managing above-ground plant carbon inputs can pave the way toward carbon neutrality and mitigating climate change. Chemical complexity of plant residues largely controls carbon sequestration. There exist conflicting opinions on whether residue chemistry diverges or converges after long-term decomposition. Moreover, whether and how microbial communities regulate residue chemistry remains unclear. This study investigated the decomposition processes and residue composition dynamics of maize straw and wheat straw and related microbiomes over a period of 9 years in three climate zones. Residue chemistry exhibited a divergent-convergent trajectory during decomposition, that is, the residue composition diverged during the 0.5-3 year period under the combined effect of straw type and climate and then converged to an array of common compounds during the 3-9 year period. Chemical divergence during the first 2-3 years was primarily driven by the changes in extracellular enzyme activity influenced by keystone taxa-guided bacterial networks, and the keystone taxa belonged to Alphaproteobacteria, particularly Rhizobiales. After 9 years, microbial assimilation became dominant, leading to chemical convergence, and fungi, particularly Chaetomium, were the main contributors to microbial assimilation. Overall, this study demonstrated that keystone taxa regulate the divergent-convergent trajectory in residue chemistry.

Nutrient and stoichiometry dynamics of decomposing litter in stream ecosystems: A global synthesis

Decomposing organic matter forms a substantial resource base fueling the biogeochemical function and secondary production of most aquatic ecosystems. However, detrital N (nitrogen) and P (phosphorus) dynamics remain relatively unexplored in aquatic relative to terrestrial ecosystems, despite fundamentally linking microbial processes to ecosystem function across broad spatial scales. We synthesized 217 published time series of detrital carbon (C), N, P, and their stoichiometric ratios (C:N, C:P, N:P) from stream ecosystems to analyze the temporal nutrient dynamics of decomposing litter using generalized additive models. Model results indicated that detritus was a net source of N (irrespective of inorganic or organic form) to the environment regardless of initial N content. In contrast, P sink/source dynamics were more strongly influenced by initial P content, where P-poor litters were sinks of nutrients until shifting to net P mineralization after ~40% mass loss. However, large variation surrounded both N and P predictions, suggesting the importance of non-microbial factors such as fragmentation by invertebrates. Detrital C:N ratios converged and became more similar toward the end of decomposition, suggesting predictable microbial functional effects throughout detrital ontogeny. C:P and N:P ratios also converged to some degree, but these model predictions were less robust than for C:N, due in part to the lower number of published detrital C:P time series. Explorations of environmental covariate effects were frequently limited by few coincident covariate measurements across studies, but temperature, N availability, and P tended to accelerate existing ontogenetic patterns in C:N. Our analysis helps unite organic matter decomposition across aquatic-terrestrial boundaries by describing basic patterns of elemental flows catalyzed by decomposition in streams, and points to a research agenda to continue addressing gaps in our knowledge of detrital nutrient dynamics across ecosystems. This article is protected by copyright. All rights reserved.

The priming effects of plant leachates on dissolved organic matter degradation in water depend on leachate type and water stability

The modification of dissolved organic matter (DOM) degradation by plant carbon inputs represents a critical biogeochemical process that controls carbon dynamics. However, the priming effects (PEs) different plant tissues induce on the degradation of DOM pools with different stabilities remain unknown. In this study, PEs, induced by different tissue leachates of Phragmites australis, were evaluated via changes in DOM components and properties of both fresh and tidal water (with different stabilities). The results showed that DOM derived from different plant tissue leachates differed in composition and bioavailability. Inputs of tissue leachates induced PEs with different intensities and directions (negative or positive) on DOM degradation of fresh and tidal water. In fresh water, the PEs of leaf and root leachates were significantly higher than those of stem and rhizome leachates. The PE direction changed for DOM degradation between fresh and tidal water. The addition of leaf and root leachates tended to induce positive PEs on DOM degradation of fresh water, while resulting in negative PEs on DOM degradation of tidal water. Negative PEs for tidal water DOM may be due to preferential utilization of microbes, high salinity, and/or the promotion of exogenous DOM production from plant tissues. The results indicate that intensity and direction of PEs induced by plant leachates depend on both leachate type and water stability. The findings highlight the necessity to examine the nature of exogenous and native DOM when interpreting the interactive processes that regulate DOM degradation.

Diversifying and perennializing plants in agroecosystems alters retention of new C and N from crop residues

Managing soils to retain new plant inputs is key to moving toward a sustainable and regenerative agriculture. Management practices, like diversifying and perennializing agroecosystems, may affect the decomposer organisms that regulate how new residue is converted to persistent soil organic matter. Here we tested whether 12 years of diversifying/perennializing plants in agroecosystems through extended rotations or grassland restoration would decrease losses of new plant residue inputs and, thus, increase retention of carbon (C) and nitrogen (N) in soil. We tracked dual-labeled (¹³ C and ¹⁵ N), isotopically enriched wheat (Triticum aestivum) residue in situ for 2 years as it decomposed in three agroecosystems: maize-soybean (CS) rotation, maize-soybean-wheat plus red clover and cereal rye cover crops (CSW2), and spring fallow management with regeneration of natural grassland species (seven to 10 species; SF). We measured losses of wheat residue (C_wheat and N_wheat ) in leached soil solution and greenhouse gas fluxes, as well as how much was recovered in microbial biomass and bulk soil at 5-cm increments down to 20 cm. CSW2 and SF both had unique, significant effects on residue decomposition and retention dynamics that were clear only when using nuanced metrics that able to tease apart subtle differences. For example, SF retained a greater portion of C_wheat in 0-5 cm surface soils (155%, p = 0.035) and narrowed the C_wheat to N_wheat ratio (p < 0.030) compared to CS. CSW2 increased an index of carbon-retention efficiency, C_wheat retained in the mesocosm divided by total measured, from 0.18 to 0.27 (49%, p = 0.001), compared to CS. Overall, we found that diversifying and extending the duration of living plants in agroecosystems can lead to greater retention of new residue inputs in subtle ways that require further investigation to fully understand.

The influence of increased precipitation and nitrogen deposition on the litter decomposition and soil microbial community structure in a semiarid grassland

Litter decomposition is a major method in which nutrients are recycled, especially carbon and nitrogen elements, in terrestrial ecosystems. However, how the responses of litter quality and soil microbial communities to global changes alter litter decomposition remains unclear. A 4-year field manipulative experiment based on the litterbag method was conducted in a typical temperate semiarid grassland in China to explore how increased precipitation and nitrogen deposition affect decomposition processes via litter quality and soil microbial communities. Our results showed that water and nitrogen addition treatments could accelerate litter carbon release and promote mass loss through different pathways. Water addition had a direct positive effect on litter decomposition. However, nitrogen addition could indirectly promote litter decomposition by improving litter quality and increasing the bacterial and fungal ratios. The water addition treatment increased litter mass loss by 7.37 %, and the N addition treatments increased litter mass loss by 5.83 %-16.93 %. Moreover, water and nitrogen additions had antagonistic effects on litter decomposition. These findings revealed that litter quality and the soil bacterial to fungal ratio were the factors controlling litter decomposition. The changes in precipitation and nitrogen deposition will impact ecosystem carbon and nitrogen cycling by altering litter decomposition processes in semiarid grassland ecosystems under the context of climate change.

Field evidence for litter and self-DNA inhibitory effects on Alnus glutinosa roots

Litter decomposition releases nutrients beneficial to plants but also induces phytotoxicity. Phytotoxicity can result from either labile allelopathic compounds or species specific and caused by conspecific DNA. Aquatic plants in flowing water generally do not suffer phytotoxicity because litter is regularly removed. In stagnant water or in litter packs an impact on root functionality can occur. So far, studies on water plant roots have been carried out in laboratory and never in field conditions. The effect of conspecific vs heterospecific litter and purified DNA were assessed on aquatic roots of the riparian woody species Alnus glutinosa L. using a novel method, using closed and open plastic tubes fixed to single roots in the field with closed tubes analogous to stagnant water. Four fresh and four decomposed litter types were used and analysed on extractable C, cellulose, lignin, N content and using ¹³ C-CPMAS NMR spectroscopy. Inhibitory effects were observed with fresh litter in closed systems, with a positive correlation with extractable C and negative with lignin and lignin : N ratio. Alnus self-DNA, but not heterologous one, caused acute toxic effects in the closed system. Our results demonstrate the first field-based evidence for self-DNA inhibition as causal factor of negative feedback between plants and substrate.

A quantitative analysis of microbial community structure-function relationships in plant litter decay

Soil microbes play a central role in ecosystem element cycling. Yet a central question in microbial ecology remains unanswered: to what extent does the taxonomic composition of soil microbial communities mediate biogeochemical process rates? In this quantitative review, we explore the mechanisms that lead to variation in the strength of microbial community structure-function relationships over space and time. To evaluate these mechanisms, we conduct a meta-analysis of studies that have monitored the decomposition of sterilized plant litter inoculated with different microbial assemblages. We find that the influence of microbial community composition on litter decay is pervasive and strong, rivalling in magnitude the influence of litter chemistry on decomposition. However, no single environmental or experimental attribute was correlated with variation in the inoculum effect. These results emphasize the need to better understand ecological dynamics within microbial communities, particularly emergent features such as cross-feeding networks, to improve predictions of soil biogeochemical function.

Absence of a home-field advantage within a short-rotation arable cropping system

Aims

The home-field advantage (HFA) hypothesis predicts faster decomposition of plant residues in home soil compared to soils with different plants (away), and has been demonstrated in forest and grassland ecosystems. It remains unclear if this legacy effect applies to crop residue decomposition in arable crop rotations. Such knowledge could improve our understanding of decomposition dynamics in arable soils and may allow optimisation of crop residue amendments in arable systems by cleverly combining crop-residue rotations with crop rotations to increase the amount of residue-derived C persisting in soil.

Methods

We tested the HFA hypothesis in a reciprocal transplant experiment with mesh bags containing wheat and oilseed rape residues in soils at three stages of a short-rotation cropping system. Subsets of mesh bags were retrieved monthly for six months to determine residue decomposition rates, concomitantly measuring soil available N, microbial community structure (phospholipid fatty acid analysis), and microbial activity (Tea Bag Index protocol) to assess how plants may influence litter decomposition rates via alterations to soil biochemical properties and microbial communities.

Results

The residues decomposed at similar rates at all rotational stages. Thorough data investigation using several statistical approaches revealed no HFA within the crop rotation. Soil microbial community structures were similar at all rotational stages.

Conclusions

We attribute the absence of an HFA to the shortness of the rotation and soil disturbance involved in intensive agricultural practices. It is therefore unlikely that appreciable benefits could be obtained in short conventionally managed arable rotations by introducing a crop-residue rotation.

Supplementary Information

The online version contains supplementary material available at 10.1007/s11104-022-05419-z.

Effects of soil mitigation on lawn-dwelling invertebrates following residential development

Residential areas are the most rapidly expanding land use type in the southeastern USA. Residential development impairs soil functions primarily through compaction and the removal or burial of topsoil and natural vegetation, which reduces water infiltration and retention, root penetration, and plant establishment. Plant stress reduces plant-derived ecosystem services and increases vulnerability to pests, often leading to supplemental management inputs in the form of irrigation, fertilizers, pesticides and labor. Soil-dwelling invertebrates, including detritivores and natural enemies of pests, drive valuable ecosystem functions that facilitate plant establishment and reduce maintenance inputs. Although poorly understood, soil disturbance during residential development likely disturbs these communities and reduces the services provided by soil-dwelling invertebrates. Here, we compare the effects of two soil compaction mitigation techniques, tillage with and without compost incorporation, on invertebrate communities and the services they provide over 2 years following residential development. We focus on the relationships between detritivores and detritus decomposition rates, entomopathogenic nematodes and the activity density of a key turfgrass pest and other arthropod herbivores and predators. We found that soil mitigation had no detectable benefit for epigeal arthropods within 1 year after disturbance, but that compost-amended soils supported greater arthropod richness and predator activity density than unmitigated soils in the second year after disturbance. In contrast, we found reduced insect-parasitic nematode activity associated with compost amendment. All taxa increased in abundance with time after development. These results can inform more sustainable residential development and landscape maintenance practices for more biodiverse and functional urban and residential ecosystems.

Temporal dynamics of mixed litter humification in an alpine treeline ecotone

Loss of plant diversity affects mountain ecosystem properties and processes, yet few studies have focused on the impact of plant function type deficiency on mixed litter humification. To fill this knowledge gap, we conducted a 1279-day litterbag decomposition experiment with six plant functional types of foliar litter to determine the temporal dynamic characteristics of mixed litter humification in a coniferous forest (CF) and an alpine shrubland (AS). The results indicated that the humus concentrations, the net accumulations and their relative mixed effects (RME) of most types were higher in CF than those in AS at 146 days, and humus net accumulations fell to approximately -80% of the initial level within 1279 days. The RME of the total humus and humic acid concentrations exhibited a general change from synergistic to antagonistic effects over time, but the mixing of single plant functional type impeded the formation of fulvic acid due to consistently exhibited antagonistic effects. Ultimately, correlation analysis indicated that environmental factors (temperature, snow depth and freeze-thaw cycles) significantly hindered litter humification in the early stage, while some initial quality factors drove this process at a longer scale. Among these aspects, the concentrations of zinc, copper and iron, as well as acid-unhydrolyzable residue (AUR):nitrogen and AUR:phosphorous, stimulated humus accumulation, while water-soluble extractables, potassium, magnesium and aluminium hampered it. Deficiencies in a single plant functional type and vegetation type variations affected litter humification at the alpine treeline, which will further affect soil carbon sequestration, which is of great significance for understanding the material circulation of alpine ecosystems.

Effects of soil fauna on litter decomposition in Chinese forests: a meta-analysis

Litter quality and climate have been presumed to be the dominant factors regulating litter decomposition rates on broad spatial scales. However, the role of soil fauna on litter decomposition is poorly understood, despite the fact that it could strongly influence decomposition by fragmentation and subsequent modification of the activities of microorganisms.In this study, we carried out a meta-analysis on the effects of soil fauna on litter decomposition rates in Chinese forests, ranging from boreal to tropical forests, based on data from 20 studies. The effects of climatic factors on decomposition rate were assessed by comparing the contribution of soil fauna to litter decomposition from studies carried out at different latitudes.The degree of influence of the soil fauna was in the order tropical (200%) > subtropical (47%) > temperate forest (28%). Comparing the effect size of soil fauna, it was found that when soil fauna was excluded, the decomposition rate, calculated using Olson's equation, was most affected in tropical forest (-0.77), while the litter decomposition rate both subtropical (-0.36) and temperate forest (-0.19) were also suppressed to varying degrees (P < 0.001). These results highlight that soil fauna could promote litter decomposition to different extents. Using stepwise multiple linear regression, the effect size of the soil fauna was negatively correlated with the cellulose and nitrogen concentrations of the initial litter material. In Chinese forests, litter decomposition rates were reduced, on average, by 65% when soil fauna was excluded. The impact of soil fauna on decomposition was shown to be closely related to climate and litter quality.

Invasive Plants and Species Richness Impact Litter Decomposition in Riparian Zones

Natural ecosystems generally include litter decomposition as part of the natural cycle since the material properties and the environment greatly influence the decomposition rate. The invasion of exotic plants alters the species diversity and growth characteristics of plant communities, but its impact on litter decomposition is unknown in the riparian zone. This study examines how invasive plants affect the early stages of litter decomposition and how species richness impacts them. This experiment involved a random litter mixture of exotic (Alternanthera philoxeroides and Bidens pilosa) and native species in the riparian zone of the Three Gorges Dam Reservoir in China. There were 43 species mixture types, with various species richness ranging from 1 to 6. Litterbags were placed in the hydro-fluctuation zone and terrestrial zone, where they decomposed over the course of 55 days. Invasive plants decompose rapidly compared to native plants (35.71% of the remaining mass of the invasive plant). The invasive plant A. philoxeroides has the potential to accelerate native plant decomposition (0.29 of non-added synergetic effect), but Bidens pilosa cannot. Nonetheless, species richness had little effect on the decomposition rate. These effects are dependent upon differences in chemical functional characteristics among the species. The initial traits of the plants, specifically C, N, and C/N, were significantly and linearly correlated with the loss of mixed litter mass and mixing effect strength (P < 0.01). In addition, submergence decomposition conditions reduce the disturbance of invasive plants and predict decomposition rates based on litter characteristics. Invasive plants can therefore impact the material cycle of an ecosystem. There is a need to examine decomposition time, which may also involve considering other factors.

Community RNA-Seq: multi-kingdom responses to living versus decaying roots in soil

Roots are a primary source of organic carbon input in most soils. The consumption of living and detrital root inputs involves multi-trophic processes and multiple kingdoms of microbial life, but typical microbial ecology studies focus on only one or two major lineages. We used Illumina shotgun RNA sequencing to conduct PCR-independent SSU rRNA community analysis ("community RNA-Seq") and simultaneously assess the bacteria, archaea, fungi, and microfauna surrounding both living and decomposing roots of the annual grass, Avena fatua. Plants were grown in 13CO2-labeled microcosms amended with 15N-root litter to identify the preferences of rhizosphere organisms for root exudates (13C) versus decaying root biomass (15N) using NanoSIMS microarray imaging (Chip-SIP). When litter was available, rhizosphere and bulk soil had significantly more Amoebozoa, which are potentially important yet often overlooked top-down drivers of detritusphere community dynamics and nutrient cycling. Bulk soil containing litter was depleted in Actinobacteria but had significantly more Bacteroidetes and Proteobacteria. While Actinobacteria were abundant in the rhizosphere, Chip-SIP showed Actinobacteria preferentially incorporated litter relative to root exudates, indicating this group's more prominent role in detritus elemental cycling in the rhizosphere. Our results emphasize that decomposition is a multi-trophic process involving complex interactions, and our methodology can be used to track the trajectory of carbon through multi-kingdom soil food webs.

Microbial community composition controls carbon flux across litter types in early phase of litter decomposition

Leaf litter decomposition is a major carbon input to soil, making it a target for increasing soil carbon storage through microbiome engineering. We expand upon previous findings to show with multiple leaf litter types that microbial composition can drive variation in carbon flow from litter decomposition and specific microbial community features are associated with synonymous patterns of carbon flow among litter types. Although plant litter type selects for different decomposer communities, within a litter type, microbial composition drives variation in the quantity of dissolved organic carbon (DOC) measured at the end of the decomposition period. Bacterial richness was negatively correlated with DOC quantity, supporting our hypothesis that across multiple litter types there are common microbial traits linked to carbon flow patterns. Variation in DOC abundance (i.e. high versus low DOC) driven by microbial composition is tentatively due to differences in bacterial metabolism of labile compounds, rather than catabolism of non‐labile substrates such as lignin. The temporal asynchrony of metabolic processes across litter types may be a substantial impediment to discovering more microbial features common to synonymous patterns of carbon flow among litters. Overall, our findings support the concept that carbon flow may be programmed by manipulating microbial community composition.

Determinism of nonadditive litter mixture effect on decomposition: Role of the moisture content of litters

The mechanisms behind the plant litter mixture effect on decomposition are still difficult to disentangle. To tackle this issue, we used a model that specifically addresses the role of the litter moisture content. Our model predicts that when two litters interact in terms of water flow, the difference of evaporation rate between two litters can trigger a nonadditive mixture effect on decomposition. Water flows from the wettest to the driest litter, changing the reaction rates without changing the overall litter water content. The reaction rate of the litter receiving the water increases relatively more than the decrease in the reaction rate of the litter supplying the water, leading to a synergistic effect. Such water flow can keep the microbial biomass of both litter in a water content domain suitable to maintain decomposition activity. When applied to experimental data (Sphagnum rubellum and Molinia caerulea litters), the model is able to assess whether any nonadditive effect originates from water content variation alone or whether other factors have to be taken into account.

Soil Bacterial Diversity Is Positively Correlated with Decomposition Rates during Early Phases of Maize Litter Decomposition

This study aimed to investigate the effects of different levels of soil- and plant-associated bacterial diversity on the rates of litter decomposition, and bacterial community dynamics during its early phases. We performed an incubation experiment where soil bacterial diversity (but not abundance) was manipulated by autoclaving and reinoculation. Natural or autoclaved maize leaves were applied to the soils and incubated for 6 weeks. Bacterial diversity was assessed before and during litter decomposition using 16S rRNA gene metabarcoding. We found a positive correlation between litter decomposition rates and soil bacterial diversity. The soil with the highest bacterial diversity was dominated by oligotrophic bacteria including Acidobacteria, Nitrospiraceae, and Gaiellaceae, and its community composition did not change during the incubation. In the less diverse soils, those taxa were absent but were replaced by copiotrophic bacteria, such as Caulobacteraceae and Beijerinckiaceae, until the end of the incubation period. SourceTracker analysis revealed that litter-associated bacteria, such as Beijerinckiaceae, only became part of the bacterial communities in the less diverse soils. This suggests a pivotal role of oligotrophic bacteria during the early phases of litter decomposition and the predominance of copiotrophic bacteria at low diversity.

Litter chemical traits strongly drove the carbon fractions loss during decomposition across an alpine treeline ecotone

The decomposition of litter carbon (C) fraction is a major determinant of soil organic matter pool and nutrient cycling. However, knowledge of litter chemical traits regulate C fractions release is still relatively limited. A litterbag experiment was conducted using six plant functional litter types at two vegetation type (coniferous forest and alpine shrubland) in a treeline ecotone. We evaluated the relative importance of litter chemistry (i.e. Nutrient, C quality, and stoichiometry) on the loss of litter mass, non-polar extractables (NPE), water-soluble extractables (WSE), acid-hydrolyzable carbohydrates (ACID), and acid-unhydrolyzable residue (AUR) during decomposition. Litter nutrients contain nitrogen (N), phosphorus (P), potassium (K), calcium (Ca), sodium (Na), magnesium (Mg), aluminium (Al), manganese (Mn), zinc (Zn), iron (Fe) and copper (Cu), litter C quality contains C, WSE, NPE, ACID, and AUR, and stoichiometry was defined by C:N, C:P; N:P, ACID:N, and AUR:N. The results showed single exponential model fitted decomposition rates of litter mass and C fractions better than double exponential or asymptotic decomposition, and the decomposition rates of C fractions were strongly correlated with initial litter nutrients, especially K, Na, Ca. Furthermore, the temporal dynamics of litter nutrients (Ca, Mg, Na, K, Zn, and Fe) strongly regulated C fractions loss during the decomposition process. Changes in litter C quality had an evident effect on the degradation of ACID and AUR, supporting the concept of "priming effect" of soluble carbon fraction. The significant differences were found in the release of NPE, WSE, and ACID rather than AUR among coniferous forest and alpine shrubland, and the vegetation type effects largely depend on the changes in litter stoichiometry, which is an important implication for the change in plant community abundance regulate decay. Collectively, elucidating the hierarchical drivers of litter chemistry on decomposition is critical to soil C sequestration in alpine ecosystems.

Distribution, sources, and decomposition of soil organic matter along a salinity gradient in estuarine wetlands characterized by C:N ratio, δ13 C-δ15 N, and lignin biomarker

Despite increasing recognition of the critical role of coastal wetlands in mitigating climate change, sea-level rise, and salinity increase, soil organic carbon (SOC) sequestration mechanisms in estuarine wetlands remain poorly understood. Here, we present new results on the source, decomposition, and storage of SOC in estuarine wetlands with four vegetation types, including single Phragmites australis (P, habitat I), a mixture of P. australis and Suaeda salsa (P + S, habitat II), single S. salsa (S, habitat III), and tidal flat (TF, habitat IV) across a salinity gradient. Values of δ¹³ C increased with depth in aerobic soil layers (0-40 cm) but slightly decreased in anaerobic soil layers (40-100 cm). The δ¹⁵ N was significantly enriched in soil organic matter at all depths than in the living plant tissues, indicating a preferential decomposition of ¹⁴ N-enriched organic components. Thus, the kinetic isotope fractionation during microbial degradation and the preferential substrate utilization are the dominant mechanisms in regulating isotopic compositions in aerobic and anaerobic conditions, respectively. Stable isotopic (δ¹³ C and δ¹⁵ N), elemental (C and N), and lignin composition (inherited (Ad/Al)s and C/V) were not completely consistent in reflecting the differences in SOC decomposition or accumulation among four vegetation types, possibly due to differences in litter inputs, root distributions, substrate quality, water-table level, salinity, and microbial community composition/activity. Organic C contents and storage decreased from upstream to downstream, likely due to primarily changes in autochthonous sources (e.g., decreased onsite plant biomass input) and allochthonous materials (e.g., decreased fluvially transported upland river inputs, and increased tidally induced marine algae and phytoplankton). Our results revealed that multiple indicators are essential to unravel the degree of SOC decomposition and accumulation, and a combination of C:N ratios, δ¹³ C, δ¹⁵ N, and lignin biomarker provides a robust approach to decipher the decomposition and source of sedimentary organic matter along the river-estuary-ocean continuum.

Microbial inputs at the litter layer translate climate into altered organic matter properties

Plant litter chemistry is altered during decomposition but it remains unknown if these alterations, and thus the composition of residual litter, will change in response to climate. Selective microbial mineralization of litter components and the accumulation of microbial necromass can drive litter compositional change, but the extent to which these mechanisms respond to climate remains poorly understood. We addressed this knowledge gap by studying needle litter decomposition along a boreal forest climate transect. Specifically, we investigated how the composition and/or metabolism of the decomposer community varies with climate, and if that variation is associated with distinct modifications of litter chemistry during decomposition. We analyzed the composition of microbial phospholipid fatty acids (PLFAs) in the litter layer and measured natural abundance δ¹³ C_PLFA values as an integrated measure of microbial metabolisms. Changes in litter chemistry and δ¹³ C values were measured in litterbag experiments conducted at each transect site. A warmer climate was associated with higher litter nitrogen concentrations as well as altered microbial community structure (lower fungi:bacteria ratios) and microbial metabolism (higher δ¹³ C_PLFA ). Litter in warmer transect regions accumulated less aliphatic-C (lipids, waxes) and retained more O-alkyl-C (carbohydrates), consistent with enhanced ¹³ C-enrichment in residual litter, than in colder regions. These results suggest that chemical changes during litter decomposition will change with climate, driven primarily by indirect climate effects (e.g., greater nitrogen availability and decreased fungi:bacteria ratios) rather than direct temperature effects. A positive correlation between microbial biomass δ¹³ C values and ¹³ C-enrichment during decomposition suggests that change in litter chemistry is driven more by distinct microbial necromass inputs than differences in the selective removal of litter components. Our study highlights the role that microbial inputs during early litter decomposition can play in shaping surface litter contribution to soil organic matter as it responds to climate warming effects such as greater nitrogen availability.

Site conditions interact with litter quality to affect home-field advantage and rhizosphere effect of litter decomposition in a subtropical wetland ecosystem

The home-field advantage (HFA) hypothesis predicts that plant litter would decompose more quickly beneath its own plant species in the soil than beneath other plant species. Theoretically, HFA can be induced by the rhizosphere of growing plants, due to so-called rhizosphere effect (RE). Despite growing evidence for the site condition-dependence of both effects, few work has be conducted to explore how site climate, vegetation type and soil properties interact to affect RE and HFA, and especially limited in situ representation from subtropical wetland systems. In a field experiment, we reciprocally incubated three root litter species (Rumex dentatus L., Carex thunbergii Steud., and Polygonum cripolitanum Hance) along a hydroperiod gradient in a subtropical wetland, which differed mainly with respect to vegetation and soil microclimate, with and without growing plants. The occurrence and magnitude of HFA and RE were mainly determined by litter quality and were stage-specific. Collectively, we detected significant HFA with chemically-recalcitrant litter from C. thunbergii and P. cripolitanum, but only at the first stage of decomposition. The presence of growing plants generally reduced litter decomposition, but the magnitude of the response was species-specific, with the positive effects detected only for root litters from C. thunbergii at the first stage of decomposition. In addition, we did not find a significant relationship between HFA and RE, indicating that plant species that produce litters exhibiting HFA may not accelerate litter decomposition via RE at same time. Structural equation models (SEM) revealed that site microclimate factors were conducive with soil properties in regulating C dynamics. Overall, soil microclimate in this wetland ecosystem was likely important in driving C cycling, either directly by changing environmental conditions, litter quality, and plant trait spectra, or indirectly by interrupting the interactions between litter and decomposers.

Microbial processing of plant remains is co-limited by multiple nutrients in global grasslands

Microbial processing of aggregate-unprotected organic matter inputs is key for soil fertility, long-term ecosystem carbon and nutrient sequestration and sustainable agriculture. We investigated the effects of adding multiple nutrients (nitrogen, phosphorus and potassium plus nine essential macro- and micro-nutrients) on decomposition and biochemical transformation of standard plant materials buried in 21 grasslands from four continents. Addition of multiple nutrients weakly but consistently increased decomposition and biochemical transformation of plant remains during the peak-season, concurrent with changes in microbial exoenzymatic activity. Higher mean annual precipitation and lower mean annual temperature were the main climatic drivers of higher decomposition rates, while biochemical transformation of plant remains was negatively related to temperature of the wettest quarter. Nutrients enhanced decomposition most at cool, high rainfall sites, indicating that in a warmer and drier future fertilized grassland soils will have an even more limited potential for microbial processing of plant remains.

Diversity-decomposition relationships in forests worldwide

Plant species diversity affects carbon and nutrient cycling during litter decomposition, yet the generality of the direction of this effect and its magnitude remains uncertain. With a meta-analysis including 65 field studies across the Earth's major forest ecosystems, we show here that decomposition was faster when litter was composed of more than one species. These positive biodiversity effects were mostly driven by temperate forests but were more variable in other forests. Litter mixture effects emerged most strongly in early decomposition stages and were related to divergence in litter quality. Litter diversity also accelerated nitrogen, but not phosphorus release, potentially indicating a decoupling of nitrogen and phosphorus cycling and perhaps a shift in ecosystem nutrient limitation with changing biodiversity. Our findings demonstrate the importance of litter diversity effects for carbon and nutrient dynamics during decomposition, and show how these effects vary with litter traits, decomposer complexity and forest characteristics.

The differential effects of endogenous cathepsin and microorganisms on changes in the texture and flavor substances of grouper (Epinephelus coioides) fillets

Grouper is an important seafood species in China and has high economic value. However, the edible value of grouper is seriously affected by deterioration in the texture and flavor during refrigeration. The purpose of this study was to investigate the effects of endogenous cathepsin and microorganisms on texture softening and flavor changes in refrigerated grouper fillets. Iodoacetic acid and ProClin 300 were used to inhibit endogenous protease activity and microbial growth separately. Iodoacetic acid can inhibit the activity of cathepsin B, L, and calpain. Moreover, iodoacetic acid does not significantly affect the growth of microorganisms. The total amounts of bacteria and Pseudomonas spp. in the samples treated with ProClin 300 were less than 2 log CFU g⁻¹ and 1 log CFU g⁻¹ on the 18th day, and the activity of protease was not significantly affected. On the 6th day, the hardness of the iodoacetic acid treatment group decreased by 8%, while the ProClin 300 treatment group decreased by 28%, and changes in the free amino acids and volatile substances significantly exceeded those of the iodoacetic acid treatment group, indicating that endogenous protease was the main factor in the texture deterioration. A first-order exponential decay model indicated that cathepsin L was the most important protease for reducing the hardness of grouper fillets, and changes in the content of free amino acids and volatile substances indicated that microorganisms played a more important role in the deterioration of flavor substances compared to that played by endogenous protease.

This study reveals the different effects of endogenous proteases and microorganisms on the texture and flavor of grouper muscles.

Plant-mediated effects of elevated CO2 and rice cultivars on soil carbon dynamics in a paddy soil

Soil organic carbon (SOC) sequestration under elevated CO₂ concentration (eCO₂ ) is a function of carbon (C) input and C retention. Nitrogen (N) limitation in natural ecosystems can constrain plant responses to eCO₂ and their subsequent effects on SOC, but the effect of eCO₂ on SOC in N-enriched agroecosystems with cultivars highly responsive to eCO₂ is largely unknown. We reported results of SOC dynamics from a field free-air CO₂ enrichment experiment with two rice cultivars having distinct photosynthetic capacities under eCO₂ . A reciprocal incubation experiment was further conducted to disentangle the effect of changes in litter quality and soil microbial community on litter-derived C dynamics. eCO₂ significantly increased total SOC content, dissolved organic C and particulate organic C under the strongly responsive cultivar, likely due to enhanced organic C inputs originated from CO₂ stimulation of shoot and root biomass. Increases in the residue C : N ratio and fungal abundance induced by eCO₂ under the strongly responsive cultivar reduced C losses from decomposition, possibly through increasing microbial C use efficiency. Our findings suggest that applications of high-yielding cultivars may substantially enhance soil C sequestration in rice paddies under future CO₂ scenarios.

Tropical Rainforest Restoration Plantations Are Slow to Restore the Soil Biological and Organic Carbon Characteristics of Old Growth Rainforest

Widespread and continuing losses of tropical old-growth forests imperil global biodiversity and alter global carbon (C) cycling. Soil organic carbon (SOC) typically declines with land use change from old-growth forest, but the underlying mechanisms are poorly understood. Ecological restoration plantations offer an established means of restoring aboveground biomass, structure and diversity of forests, but their capacity to recover the soil microbial community and SOC is unknown due to limited empirical data and consensus on the mechanisms of SOC formation. Here, we examine soil microbial community response and SOC in tropical rainforest restoration plantings, comparing them with the original old-growth forest and the previous land use (pasture). Two decades post-reforestation, we found a statistically significant but small increase in SOC in the fast-turnover particulate C fraction. Although the δ¹³C signature of the more stable humic organic C (HOC) fraction indicated a significant compositional turnover in reforested soils, from C₄ pasture-derived C to C₃ forest-derived C, this did not translate to HOC gains compared with the pasture baseline. Matched old-growth rainforest soils had significantly higher concentrations of HOC than pasture and reforested soils, and soil microbial enzyme efficiency and the ratio of gram-positive to gram-negative bacteria followed the same pattern. Restoration plantings had unique soil microbial composition and function, distinct from baseline pasture but not converging on target old growth rainforest within the examined timeframe. Our results suggest that tropical reforestation efforts could benefit from management interventions beyond re-establishing tree cover to realize the ambition of early recovery of soil microbial communities and stable SOC.

Responses of soil nutrients and microbial communities to intercropping medicinal plants in moso bamboo plantations in subtropical China

Bamboo forests are one of the most important forest resources in subtropical China. A pure, single-layer bamboo forest is considered an optimal habitat for intercropping medicinal herbs. Soil microorganisms have an important role in various ecological processes and respond quickly to environmental changes. However, changes in soil nutrients and microbial communities associated with agroforestry cultivation methods remain poorly documented. In the present study, a pure moso bamboo (Phyllostachys edulis) forest (Con) and three adjacent moso bamboo-based agroforestry (BAF) systems (moso bamboo-Paris polyphylla (BP), moso bamboo-Tetrastigma hemsleyanum (BT) and moso bamboo-Bletilla striata (BB)) were selected; and their soil chemical properties and bacterial communities were studied and compared to evaluate the effects of agroforestry on soil bacterial communities and the relationship between soil properties and bacterial communities in BAF systems. Results showed that compared with soils under the Con, soils under the BAF systems had more (p < 0.05) soil organic carbon (SOC) and available nitrogen (AN) but lower (p < 0.05) pH and available potassium (AK). In addition, compared with the Con system, the BB and BT systems had significantly greater (p < 0.05) available phosphorus (AP). Compared with that in the Con system, the Shannon index in the BAF systems was significantly greater (p < 0.05), but the Chao1 index not different. On the basis of relative abundance values, compared with the Con soils, the BAF soils had a significantly greater abundance of (p < 0.05) Bacteroidetes and Planctomyces but a significantly lower abundance of (p < 0.05) Verrucomicrobia, Gemmatimonadetes and Candidatus Xiphinematobacter. Moreover, compared with the Con system, the BB and BT systems had a greater (p < 0.05) abundance of Actinobacteria, Rhodoplanes, Candidatus Solibacter and Candidatus Koribacter. Redundancy analysis (RDA) revealed that soil pH, SOC and AP were significantly correlated with bacterial community composition. Results of this study suggest that intercropping medicinal herbs can result in soil acidification and potassium (K) depletion; thus, countermeasures such as applications of K fertilizer and alkaline soil amendments are necessary for BAF systems.

Generic parameters of first-order kinetics accurately describe soil organic matter decay in bare fallow soils over a wide edaphic and climatic range

The conventional soil organic matter (SOM) decay paradigm considers the intrinsic quality of SOM as the dominant decay limitation with the result that it is modelled using simple first-order decay kinetics. This view and modelling approach is often criticized for being too simplistic and unreliable for predictive purposes. It is still under debate if first-order models can correctly capture the variability in temporal SOM decay observed between different agroecosystems and climates. To address this question, we calibrated a first-order model (Q) on six long-term bare fallow field experiments across Europe. Following conventional SOM decay theory, we assumed that parameters directly describing SOC decay (rate of SOM quality change and decomposer metabolism) are thermodynamically constrained and therefore valid for all sites. Initial litter input quality and edaphic interactions (both local by definition) and microbial efficiency (possibly affected by nutrient stoichiometry) were instead considered site-specific. Initial litter input quality explained most observed kinetics variability, and the model predicted a convergence toward a common kinetics over time. Site-specific variables played no detectable role. The decay of decades-old SOM seemed mostly influenced by OM chemistry and was well described by first order kinetics and a single set of general kinetics parameters.

Deep soil flipping increases carbon stocks of New Zealand grasslands

Sequestration of soil organic carbon (SOC) has been recognized as an opportunity to off-set global carbon dioxide (CO₂ ) emissions. Flipping (full inversion to 1-3 m) is a practice used on New Zealand's South Island West Coast to eliminate water-logging in highly podzolized sandy soils. Flipping results in burial of SOC formed in surface soil horizons into the subsoil and the transfer of subsoil material low in SOC to the "new" topsoil. The aims of this study were to quantify changes in the storage and stability of SOC over a 20-year period following flipping of high-productive pasture grassland. Topsoils (0-30 cm) from sites representing a chronosequence of flipping (3-20 years old) were sampled (2005/07) and re-sampled (2017) to assess changes in topsoil carbon stocks. Deeper samples (30-150 cm) were also collected (2017) to evaluate the changes in stocks of SOC previously buried by flipping. Density fractionation was used to determine SOC stability in recent and buried topsoils. Total SOC stocks (0-150 cm) increased significantly by 69 ± 15% (179 ± 40 Mg SOC ha^-1 ) over 20 years following flipping. Topsoil burial caused a one-time sequestration of 160 ± 14 Mg SOC ha^-1 (30-150 cm). The top 0-30 cm accumulated 3.6 Mg SOC ha^-1  year^-1 . The chronosequence and re-sampling revealed SOC accumulation rates of 1.2-1.8 Mg SOC ha^-1  year^-1 in the new surface soil (0-15 cm) and a SOC deficit of 36 ± 5% after 20 years. Flipped subsoils contained up to 32% labile SOC (compared to <1% in un-flipped subsoils) thus buried SOC was preserved. This study confirms that burial of SOC and the exposure of SOC depleted subsoil results in an overall increase of SOC stocks of the whole soil profile and long-term SOC preservation.

Wide-spread limitation of soil organic nitrogen transformations by substrate availability and not by extracellular enzyme content

Proteins constitute the single largest soil organic nitrogen (SON) reservoir and its decomposition drives terrestrial N availability. Protein cleavage by extracellular enzymes is the rate limiting step in the soil organic N cycle and can be controlled by extracellular enzyme production or protein availability/stabilization in soil. Both controls can be affected by geology and land use, as well as be vulnerable to changes in soil temperature and moisture/O2. To explore major controls of soil gross protein depolymerization we sampled six soils from two soil parent materials (calcareous and silicate), where each soil type included three land uses (cropland, pasture and forest). Soil samples were subjected to three temperature treatments (5, 15, 25 °C at 60% water-holding capacity (WHC) and aerobic conditions) or three soil moisture/O2 treatments (30 and 60% WHC at 21% O2, 90% WHC at 1% O2, at 20 °C) in short-term experiments. Samples were incubated for one day in the temperature experiment and for one week in the moisture/O2 experiment. Gross protein depolymerization rates were measured by a novel 15N isotope pool dilution approach. The low temperature sensitivity of gross protein depolymerization, the lack of relationship with protease activity and strong effects of soil texture and pH demonstrate that this process is constrained by organo-mineral associations and not by soil enzyme content. This also became apparent from the inverse effects in calcareous and silicate soils caused by water saturation/O2 limitation. We highlight that the specific soil mineralogy influenced the response of gross depolymerization rates to water saturation/O2 limitation, causing (I) increasing gross depolymerization rates due to release of adsorbed proteins by reductive dissolution of Fe- and Mn-oxyhydroxides in calcareous soils and (II) decreasing gross depolymerization rates due to mobilization of coagulating and toxic Al3+ compounds in silicate soils.

Global variation of soil microbial carbon-use efficiency in relation to growth temperature and substrate supply

Soil microbial carbon-use efficiency (CUE), which is defined as the ratio of growth over C uptake, is commonly assumed as a constant or estimated by a temperature-dependent function in current microbial-explicit soil carbon (C) models. The temperature-dependent function (i.e., CUE = CUE₀ + m × (T − 20)) simulates the dynamic CUE based on the specific CUE at a given reference temperature (i.e., CUE₀) and a temperature response coefficient (i.e., m). Here, based on 780 observations from 98 sites, we showed a divergent spatial distribution of the soil microbial CUE (0.5 ± 0.25; mean ± SD) at the global scale. Then, the key parameters CUE₀ and m in the above equation were estimated as 0.475 and −0.016, respectively, based on the observations with the Markov chain Monte Carlo technique. We also found a strong dependence of microbial CUE on the type of C substrate. The multiple regression analysis showed that glucose influences the variation of measured CUE associated with the environmental factors. Overall, this study confirms the global divergence of soil microbial CUE and calls for the incorporation of C substrate beside temperature in estimating the microbial CUE in different biomes.

Environmental and Agricultural Relevance of Humic Fractions Extracted by Alkali from Soils and Natural Waters

To study the structure and function of soil organic matter, soil scientists have performed alkali extractions for soil humic acid (HA) and fulvic acid (FA) fractions for more than 200 years. Over the last few decades aquatic scientists have used similar fractions of dissolved organic matter, extracted by resin adsorption followed by alkali desorption. Critics have claimed that alkali-extractable fractions are laboratory artifacts, hence unsuitable for studying natural organic matter structure and function in field conditions. In response, this review first addresses specific conceptual concerns about humic fractions. Then we discuss several case studies in which HA and FA were extracted from soils, waters, and organic materials to address meaningful problems across diverse research settings. Specifically, one case study demonstrated the importance of humic substances for understanding transport and bioavailability of persistent organic pollutants. An understanding of metal binding sites in FA and HA proved essential to accurately model metal ion behavior in soil and water. In landscape-based studies, pesticides were preferentially bound to HA, reducing their mobility. Compost maturity and acceptability of other organic waste for land application were well evaluated by properties of HA extracted from these materials. A young humic fraction helped understand N cycling in paddy rice ( L.) soils, leading to improved rice management. The HA and FA fractions accurately represent natural organic matter across multiple environments, source materials, and research objectives. Studying them can help resolve important scientific and practical issues.

Immobilization of heavy metals during aquatic and terrestrial litter decomposition in an alpine forest

Plant litter decomposition is an important pathway of heavy metal cycling in forested soil and watershed ecosystems globally, but is so far an overlooked aspects in the existing literature. To investigate the temporal dynamics of heavy metals in decomposing litter, we conducted a two-year field experiment using litterbag method across aquatic and terrestrial ecosystems in an alpine forest on the eastern Tibetan Plateau. Using multigroup comparisons of structural equation modeling with different litter mass-loss intervals, we assessed the direct and indirect effects of several biotic and abiotic factors on the release rates of lead (Pb), cadmium (Cd), and chromium (Cr). Results suggested that both the concentrations and amounts of Pb, Cd, and Cr increased during litter decomposition regardless of ecosystem type and litter species, showing an immobilization pattern. The release rates of Pb, Cd, or Cr shared a common hierarchy of drivers across aquatic and terrestrial ecosystems, with environmental factors and initial litter quality having both direct and indirect effects, and the effects of initial litter quality gained importance in the late decomposition stages. However, litter chemical dynamics and microbial diversity index have significant effects on release rates throughout the decomposition process. Our results are useful for better understanding heavy metal fluxes in aquatic and terrestrial ecosystems, and for predicting anthropogenic heavy metal pollution impacts on ecosystems. In addition, our results indicated that not only spatial but also temporal variability should be taken into consideration when addressing heavy metal dynamics accompanying litter decomposition process.