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El-Nagar D, Salem SH, El-Zamik FI, El-Basit HMIA, Galal YGM, Soliman SM, Aziz HAA, Rizk MA, El-Sayed ESR. Bioprospecting endophytic fungi for bioactive metabolites with seed germination promoting potentials. BMC Microbiol 2024; 24:200. [PMID: 38851702 PMCID: PMC11162052 DOI: 10.1186/s12866-024-03337-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 05/16/2024] [Indexed: 06/10/2024] Open
Abstract
There is an urgent need for new bioactive molecules with unique mechanisms of action and chemistry to address the issue of incorrect use of chemical fertilizers and pesticides, which hurts both the environment and the health of humans. In light of this, research was done for this work to isolate, identify, and evaluate the germination-promoting potential of various plant species' fungal endophytes. Zea mays L. (maize) seed germination was examined using spore suspension of 75 different endophytic strains that were identified. Three promising strains were identified through screening to possess the ability mentioned above. These strains Alternaria alternate, Aspergilus flavus, and Aspergillus terreus were isolated from the stem of Tecoma stans, Delonix regia, and Ricinus communis, respectively. The ability of the three endophytic fungal strains to produce siderophore and indole acetic acid (IAA) was also examined. Compared to both Aspergillus flavus as well as Aspergillus terreus, Alternaria alternata recorded the greatest rates of IAA, according to the data that was gathered. On CAS agar versus blue media, all three strains failed to produce siderophores. Moreover, the antioxidant and antifungal potentials of extracts from these fungi were tested against different plant pathogens. The obtained results indicated the antioxidant and antifungal activities of the three fungal strains. GC-Mass studies were carried out to determine the principal components in extracts of all three strains of fungi. The three strains' fungus extracts included both well-known and previously unidentified bioactive compounds. These results may aid in the development of novel plant growth promoters by suggesting three different fungal strains as sources of compounds that may improve seed germination. According to the study that has been given, as unexplored sources of bioactive compounds, fungal endophytes have great potential.
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Affiliation(s)
- Dina El-Nagar
- Soil and Water Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Cairo, Egypt
| | - S H Salem
- Department of Microbiology, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
| | - Fatma I El-Zamik
- Department of Microbiology, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
| | | | - Y G M Galal
- Soil and Water Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Cairo, Egypt
| | - S M Soliman
- Soil and Water Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Cairo, Egypt
| | - H A Abdel Aziz
- Soil and Water Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Cairo, Egypt
| | - M A Rizk
- Soil and Water Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Cairo, Egypt
| | - El-Sayed R El-Sayed
- Plant Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Cairo, Egypt.
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2
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Hallas-Mølle M, Burow M, Henrissat B, Johansen KS. Cryptococcus neoformans: plant-microbe interactions and ecology. Trends Microbiol 2024:S0966-842X(24)00059-3. [PMID: 38519353 DOI: 10.1016/j.tim.2024.03.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 02/28/2024] [Accepted: 03/01/2024] [Indexed: 03/24/2024]
Abstract
While the opportunistic human pathogens Cryptococcus neoformans and Cryptococcus gattii are often isolated from plants and plant-related material, evidence suggests that these Cryptococcus species do not directly infect plants. Studies find that plants are important for Cryptococcus mating and dispersal. However, these studies have not provided enough detail about how plants and these fungi interact, especially in ways that could show the fungi are capable of causing disease. This review synthesizes recent findings from studies utilizing different plant models associated with the ecology of C. neoformans and C. gattii. Unanswered questions about their environmental role are highlighted. Overall, current research indicates that Cryptococcus utilizes plants as a substrate rather than harming them, arguing against Cryptococcus as a genuine plant pathogen. We hypothesize that plants represent reservoirs that aid dispersal, not hosts vulnerable to infection.
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Affiliation(s)
- Magnus Hallas-Mølle
- Department of Geoscience and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958 Frederiksberg C, Denmark
| | - Meike Burow
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark
| | - Bernard Henrissat
- Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 224, 2800 Kgs, Lyngby, Denmark
| | - Katja Salomon Johansen
- Department of Geoscience and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958 Frederiksberg C, Denmark.
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Daroodi Z, Taheri P. The genus Acrophialophora: History, phylogeny, morphology, beneficial effects and pathogenicity. Fungal Genet Biol 2024; 171:103875. [PMID: 38367800 DOI: 10.1016/j.fgb.2024.103875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2023] [Revised: 01/21/2024] [Accepted: 02/12/2024] [Indexed: 02/19/2024]
Abstract
The genus Acrophialophora is a thermotolerant fungus, which is widely distributed in temperate and tropical zones. This fungus is classified in Ascomycota and belongs to the Chaetomiaceae family and the genera of Parathielavia, Pseudothielavia and Hyalosphaerella are closely related to Acrophialophora. For this genus have been reported 28 species so far, which two species of Acrophialophora jodhpurensis and Acrophialophora teleoafricana produce only sexual phase and other species produce asexual form. Therefore, producing both sexual and asexual forms were not reported by any species. Many applications were reported by some species in agriculture, pharmacy and industry. Production of enzymes, antimicrobial metabolites and plant growth-promoting factors were reported by some species. The species of A. nainiana is used in the industries of textile, fruit juice, pulp and paper due to extracellular enzyme production. Also, other species produce extracellular enzymes that can be used in various industries. The species Acrophialophora are used in the composting industry due to the production of various enzymes and to be thermotolerant. In addition, some species were isolated from hostile environmental conditions. Therefore has been suggested that it can be used for mycoremediation. Also, antimicrobial metabolites of Acrophialophora have been reported to be effective against human and plant pathogens. In contrast to the beneficial effects described, the Acrophialophora pathogenicity has been rarely reported. Two species A. fusispora and A. levis are opportunistic fungi and have been reported as pathogens in humans, animals and plants. Currently, the development and applications of Acrophialophora species have increased more than past. To our knowledge, there is no report with comprehensive information on the species of Acrophialophora, which include their disadvantage and beneficial effects, particularly in agriculture. Therefore, it seems necessary to pay more in-depth attention to the application of this genus as a beneficial fungus in agriculture, pharmaceutical and industry. This review is focused on the history, phylogeny, morphology, valuable roles of Acrophialophora and pathogenicity.
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Affiliation(s)
- Zoha Daroodi
- Department of Plant Protection, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Parissa Taheri
- Department of Plant Protection, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran.
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4
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Chauhan P, Singh M, Sharma A, Singh M, Chadha P, Kaur A. Halotolerant and plant growth-promoting endophytic fungus Aspergillus terreus CR7 alleviates salt stress and exhibits genoprotective effect in Vigna radiata. Front Microbiol 2024; 15:1336533. [PMID: 38404598 PMCID: PMC10884769 DOI: 10.3389/fmicb.2024.1336533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 01/22/2024] [Indexed: 02/27/2024] Open
Abstract
Soil salinity is one of the major environmental stresses that results in reduction of cultivable land and decreased productivity. In the present study, halotolerant and plant growth-promoting endophytic fungi were isolated from Catharanthus roseus, and their effect in mitigating salt stress in Vigna radiata was evaluated. An isolate CR7, identified to be Aspergillus terreus, showing plant growth promotion activities, viz. IAA production (23.43 ± 0.79 μg/ml), phosphate solubilization (133.63 ± 6.40 μg/ml), ACC deaminase activity (86.36 ± 2.70 μmol α-ketobutyrate/h/mg protein) etc. and ability to grow at 15% NaCl was selected for further in vivo studies. Colonization of CR7 was carried out in V. radiata which was subjected to different concentrations of salt (150, 200, and 250 mM NaCl). Under salt stress, A. terreus CR7 inoculated plants showed substantially improved root and shoot length, biomass, chlorophyll content, relative water content, phenolics, protein content, and DPPH scavenging activity. Endogenous IAA level was enhanced by 5.28-fold in treated plants at maximum salt stress. Inoculation of A. terreus CR7 affected oxidative stress parameters, exhibiting an increase in catalase and superoxide dismutase and reduction in proline, electrolyte leakage, and malondialdehyde content. Fluorescent microscopic analysis of roots revealed improved cell viability and decreased levels of glutathione and hydrogen peroxide under salt stress in treated plants. The isolate A. terreus CR7 also protected against DNA damage induced by salt stress which was evaluated using comet assay. A decrease in DNA tail length, tail moment, and olive tail moment to the extent of 19.87%, 19.76%, and 24.81%, respectively, was observed in A. terreus CR7-colonized plants under salt stress. It can be concluded that A. terreus CR7 can be exploited for alleviating the impact of salt stress in crop plants.
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Affiliation(s)
- Pooja Chauhan
- Department of Microbiology, Guru Nanak Dev University, Amritsar, India
| | - Mandeep Singh
- Department of Zoology, Guru Nanak Dev University, Amritsar, India
| | - Avinash Sharma
- Department of Microbiology, Guru Nanak Dev University, Amritsar, India
| | - Mangaljeet Singh
- Department of Biotechnology, Guru Nanak Dev University, Amritsar, India
| | - Pooja Chadha
- Department of Zoology, Guru Nanak Dev University, Amritsar, India
| | - Amarjeet Kaur
- Department of Microbiology, Guru Nanak Dev University, Amritsar, India
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Qin X, Xu J, An X, Yang J, Wang Y, Dou M, Wang M, Huang J, Fu Y. Insight of endophytic fungi promoting the growth and development of woody plants. Crit Rev Biotechnol 2024; 44:78-99. [PMID: 36592988 DOI: 10.1080/07388551.2022.2129579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Revised: 04/04/2022] [Accepted: 04/16/2022] [Indexed: 01/04/2023]
Abstract
Microorganisms play an important role in plant growth and development. In particular, endophytic fungi is one of the important kinds of microorganisms and has a mutually beneficial symbiotic relationship with host plants. Endophytic fungi have many substantial benefits to host plants, especially for woody plants, such as accelerating plant growth, enhancing stress resistance, promoting nutrient absorption, resisting pathogens and etc. However, the effects of endophytic fungi on the growth and development of woody plants have not been systematically summarized. In this review, the functions of endophytic fungi for the growth and development of woody plants have been mainly reviewed, including regulating plant growth (e.g., flowering, root elongation, etc.) by producing nutrients and plant hormones, and improving plant disease, insect resistance and heavy metal resistance by producing secondary metabolites. In addition, the diversity of endophytic fungi could improve the ability of woody plants to adapt to adverse environment. The components produced by endophytic fungi have excellent potential for the growth and development of woody plants. This review has systematically discussed the potential regulation mechanism of endophytic fungi regulating the growth and development of woody plants, it would be of great significance for the development and utilization of endophytic fungi resource from woody plants for the protection of forest resources.
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Affiliation(s)
- Xiangyu Qin
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Jian Xu
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Xiaoli An
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Jie Yang
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Yao Wang
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Meijia Dou
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Minggang Wang
- The College of Forestry, Beijing Forestry University, Beijing, PR China
| | - Jin Huang
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin, PR China
- College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, PR China
| | - Yujie Fu
- The College of Forestry, Beijing Forestry University, Beijing, PR China
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Norphanphoun C, Hyde KD. First Report of Colletotrichum fructicola, C. rhizophorae sp. nov. and C. thailandica sp. nov. on Mangrove in Thailand. Pathogens 2023; 12:1436. [PMID: 38133319 PMCID: PMC10747506 DOI: 10.3390/pathogens12121436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 11/27/2023] [Accepted: 12/06/2023] [Indexed: 12/23/2023] Open
Abstract
Colletotrichum, a genus within the phylum Ascomycota (Fungi) and family Glomerellaceae are important plant pathogens globally. In this paper, we detail four Colletotrichum species found in mangrove ecosystems. Two new species, Colletotrichum rhizophorae and C. thailandica, and a new host record for Colletotrichum fructicola were identified in Thailand. Colletotrichum tropicale was collected from Taiwan's mangroves and is a new record for Rhizophora mucronata. These identifications were established through a combination of molecular analysis and morphological characteristics. This expanded dataset for Colletotrichum enhances our understanding of the genetic diversity within this genus and its associations with mangrove ecosystems. The findings outlined herein provide data on our exploration of mangrove pathogens in Asia.
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Affiliation(s)
- Chada Norphanphoun
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand;
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Mushroom Research Foundation, 128 M.3 Ban Pa Deng T. Pa Pae, A. Mae Taeng, Chiang Mai 50150, Thailand
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand;
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Mushroom Research Foundation, 128 M.3 Ban Pa Deng T. Pa Pae, A. Mae Taeng, Chiang Mai 50150, Thailand
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7
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do Espírito Santo BC, Oliveira JADS, Ribeiro MADS, Schoffen RP, Polli AD, Polonio JC, da Silva AA, de Abreu Filho BA, Heck MC, Meurer EC, Constantin PP, Pileggi M, Vicentini VEP, Golias HC, Pamphile JA. Antitumor and antibacterial activity of metabolites of endophytic Colletotrichum siamense isolated from coffee (Coffea arabica L. cv IAPAR-59). Braz J Microbiol 2023; 54:2651-2661. [PMID: 37642890 PMCID: PMC10689633 DOI: 10.1007/s42770-023-01104-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Accepted: 08/14/2023] [Indexed: 08/31/2023] Open
Abstract
Endophytic fungi produce a range of known metabolites and several others, not yet explored, which present important biological activities from the pharmaceutical and industrial perspective. Several studies have reported the diversity of endophytes in Coffea arabica plants, although few have been described in organic cultures. In the current paper, we describe the chemical profile of specialized metabolites in the ethyl acetate phase in a strain of the endophytic fungus Colletotrichum siamense associated with coffee (Coffea arabica L.) (Rubiaceae) and its potential against tumor cells and bacteria of medical and food importance. Cytotoxicity assays in tumor cells MCF-7 and HepG2/C3A were performed by MTT and microdilution in broth to evaluate the antibacterial action of metabolic extract. The antiproliferative assay showed promising results after 24 h of treatment, with 50% injunction concentrations for the two cell types. UHPLC-MS/MS analyses with an electrospray ionization source were used to analyze the extracts and identify compounds of species Colletotrichum siamense, which is still little explored as a source of active metabolites. Many of these compounds observed in the endophytic need to be chemically synthesized in industry, at high costs, while production by the fungus becomes a chemically and economically more viable alternative. Pyrocatechol, gentisyl alcohol, and alpha-linolenic acid, associated with different mechanisms of action against tumor cells, were detected among the main compounds. The extract of the endophytic fungus Colletotrichum siamense presented several compounds with pharmacological potential and antibacterial activity, corroborating its potential in biotechnological applications.
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Affiliation(s)
- Bruno César do Espírito Santo
- Department of Biotechnology, Genetics and Cell Biology, LBioMic, Universidade Estadual de Maringá, Maringá, PR, Brazil
| | | | | | - Rodrigo Pawloski Schoffen
- Department of Biotechnology, Genetics and Cell Biology, LBioMic, Universidade Estadual de Maringá, Maringá, PR, Brazil
| | - Andressa Domingos Polli
- Department of Biotechnology, Genetics and Cell Biology, LBioMic, Universidade Estadual de Maringá, Maringá, PR, Brazil
| | - Julio Cesar Polonio
- Department of Biotechnology, Genetics and Cell Biology, LBioMic, Universidade Estadual de Maringá, Maringá, PR, Brazil.
| | - Angela Aparecida da Silva
- Department of Biotechnology, Genetics and Cell Biology, LBioMic, Universidade Estadual de Maringá, Maringá, PR, Brazil
| | - Benício Alves de Abreu Filho
- Center for Health Sciences, Department of Basic Health Sciences, Universidade Estadual de Maringá, Maringá, PR, Brazil
| | - Michele Cristina Heck
- Department of Biotechnology, Genetics and Cell Biology, Universidade Estadual de Maringá, Maringá, PR, Brazil
| | | | - Paola Pereira Constantin
- Department of Structural, Molecular and Genetic Biology, Universidade Estadual de Ponta Grossa, Ponta Grossa, PR, Brazil
| | - Marcos Pileggi
- Department of Structural, Molecular and Genetic Biology, Universidade Estadual de Ponta Grossa, Ponta Grossa, PR, Brazil
| | | | - Halison Correia Golias
- Department of Biotechnology, Genetics and Cell Biology, LBioMic, Universidade Estadual de Maringá, Maringá, PR, Brazil
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Nacoon S, Seemakram W, Gateta T, Theerakulpisut P, Sanitchon J, Kuyper TW, Boonlue S. Accumulation of Health-Promoting Compounds in Upland Black Rice by Interacting Mycorrhizal and Endophytic Fungi. J Fungi (Basel) 2023; 9:1152. [PMID: 38132753 PMCID: PMC10744396 DOI: 10.3390/jof9121152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2023] [Revised: 11/13/2023] [Accepted: 11/27/2023] [Indexed: 12/23/2023] Open
Abstract
There is an increasing interest in finding eco-friendly and safe approaches to increase agricultural productivity and deliver healthy foods. Arbuscular mycorrhizal fungi (AMF) and endophytic fungi (EPF) are important components of sustainable agriculture in view of their ability to increase productivity and various plant secondary metabolites with health-promoting effects. In a pot experiment, our main research question was to evaluate the additive and synergistic effects of an AMF and four root-endophytic fungi on plant performance and on the accumulation of health-promoting secondary compounds. Plant growth varied between the treatments with both single inoculants and co-inoculation of an AMF and four EPF strains. We found that inoculation with a single EPF positively affected the growth and biomass production of most of the plant-endophyte consortia examined. The introduction of AMF into this experiment (dual inoculation) had a beneficial effect on plant growth and yield. AMF, Rhizophagus variabilis KS-02 co-inoculated with EPF, Trichoderma zelobreve PBMP16 increased the highest biomass, exceeding the growth rate of non-inoculated plants. Co-inoculated R. variabilis KS-02 and T. zelobreve PBMP16 had significantly greater beneficial effects on almost all aspects of plant growth, photosynthesis-related parameters, and yield. It also promoted root growth quality and plant nutrient uptake. The phenolic compounds, anthocyanin, and antioxidant capacity in rice seeds harvested from plants co-inoculated with AMF and EPF were dramatically increased compared with those from non-inoculated plants. In conclusion, our results indicated that EPF and AMF contributed to symbiosis in Maled Phai cultivar and were coordinately involved in promoting plant growth performance under a pot trial.
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Affiliation(s)
- Sabaiporn Nacoon
- Department of Microbiology, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand; (S.N.); (W.S.); (T.G.)
| | - Wasan Seemakram
- Department of Microbiology, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand; (S.N.); (W.S.); (T.G.)
| | - Thanawan Gateta
- Department of Microbiology, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand; (S.N.); (W.S.); (T.G.)
| | - Piyada Theerakulpisut
- Department of Biology, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand;
- Salt-Tolerant Rice Research Group, Khon Kaen University, Khon Kaen 40002, Thailand
| | - Jirawat Sanitchon
- Department of Agronomy, Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand;
| | - Thomas W. Kuyper
- Soil Biology Group, Wageningen University & Research, P.O. Box 47, 6700 AA Wageningen, The Netherlands;
| | - Sophon Boonlue
- Department of Microbiology, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand; (S.N.); (W.S.); (T.G.)
- Salt-Tolerant Rice Research Group, Khon Kaen University, Khon Kaen 40002, Thailand
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Guardiola-Márquez CE, Santos-Ramírez MT, Figueroa-Montes ML, Valencia-de los Cobos EO, Stamatis-Félix IJ, Navarro-López DE, Jacobo-Velázquez DA. Identification and Characterization of Beneficial Soil Microbial Strains for the Formulation of Biofertilizers Based on Native Plant Growth-Promoting Microorganisms Isolated from Northern Mexico. PLANTS (BASEL, SWITZERLAND) 2023; 12:3262. [PMID: 37765426 PMCID: PMC10537599 DOI: 10.3390/plants12183262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Revised: 09/04/2023] [Accepted: 09/11/2023] [Indexed: 09/29/2023]
Abstract
Plant growth-promoting microorganisms (PGPM) benefit plant health by enhancing plant nutrient-use efficiency and protecting plants against biotic and abiotic stresses. This study aimed to isolate and characterize autochthonous PGPM from important agri-food crops and nonagricultural plants to formulate biofertilizers. Native microorganisms were isolated and evaluated for PGP traits (K, P, and Zn solubilization, N2-fixation, NH3-, IAA and siderophore production, and antifungal activity against Fusarium oxysporum). Isolates were tested on radish and broccoli seedlings, evaluating 19 individual isolates and 12 microbial consortia. Potential bacteria were identified through DNA sequencing. In total, 798 bacteria and 209 fungi were isolated. Isolates showed higher mineral solubilization activity than other mechanisms; 399 bacteria and 156 fungi presented mineral solubilization. Bacteria were relevant for nitrogen fixation, siderophore, IAA (29-176 mg/L), and ammonia production, while fungi for Fusarium growth inhibition (40-69%). Twenty-four bacteria and eighteen fungi were selected for their PGP traits. Bacteria had significantly (ANOVA, p < 0.05) better effects on plants than fungi; treatments improved plant height (23.06-51.32%), leaf diameter (25.43-82.91%), and fresh weight (54.18-85.45%) in both crops. Most potential species belonged to Pseudomonas, Pantoea, Serratia, and Rahnella genera. This work validated a high-throughput approach to screening hundreds of rhizospheric microorganisms with PGP potential isolated from rhizospheric samples.
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Affiliation(s)
- Carlos Esteban Guardiola-Márquez
- Tecnologico de Monterrey, Escuela de Ingeniería y Ciencias, Ave. General Ramon Corona 2514, Zapopan 45138, Jalisco, Mexico; (C.E.G.-M.)
| | - María Teresa Santos-Ramírez
- Tecnologico de Monterrey, Escuela de Ingeniería y Ciencias, Ave. General Ramon Corona 2514, Zapopan 45138, Jalisco, Mexico; (C.E.G.-M.)
| | - Melina Lizeth Figueroa-Montes
- Tecnologico de Monterrey, Escuela de Ingeniería y Ciencias, Ave. General Ramon Corona 2514, Zapopan 45138, Jalisco, Mexico; (C.E.G.-M.)
| | | | - Iván Jesús Stamatis-Félix
- Tecnologico de Monterrey, Escuela de Ingeniería y Ciencias, Ave. General Ramon Corona 2514, Zapopan 45138, Jalisco, Mexico; (C.E.G.-M.)
| | - Diego E. Navarro-López
- Tecnologico de Monterrey, Escuela de Ingeniería y Ciencias, Ave. General Ramon Corona 2514, Zapopan 45138, Jalisco, Mexico; (C.E.G.-M.)
| | - Daniel A. Jacobo-Velázquez
- Tecnologico de Monterrey, Escuela de Ingeniería y Ciencias, Ave. General Ramon Corona 2514, Zapopan 45138, Jalisco, Mexico; (C.E.G.-M.)
- Tecnologico de Monterrey, Institute for Obesity Research, Av. General Ramon Corona 2514, Zapopan 45201, Jalisco, Mexico
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10
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Chen CY, Selvaraj P, Naqvi NI. Functional analysis of auxin derived from a symbiotic mycobiont. FRONTIERS IN PLANT SCIENCE 2023; 14:1216680. [PMID: 37745999 PMCID: PMC10515717 DOI: 10.3389/fpls.2023.1216680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Accepted: 08/16/2023] [Indexed: 09/26/2023]
Abstract
The biosynthesis of auxin or indole-3-acetic acid by microorganisms has a major impact on plant-microbe interactions. Several beneficial microbiota are known to produce auxin, which largely influences root development and growth in the host plants. Akin to findings in rhizobacteria, recent studies have confirmed the production of auxin by plant growth-promoting fungi too. Here, we show that Penicillium citrinum isolate B9 produces auxin as deduced by liquid chromatography tandem-mass spectrometry analysis. Such fungal auxin is secreted and contributes directly to enhanced root and shoot development and overall plant growth in Arabidopsis thaliana. Furthermore, auxin production by P. citrinum likely involves more than one tryptophan-dependent pathway. Using auxin biosynthesis inhibitor L-Kynurenine, we show that the indole-3-pyruvate pathway might be one of the key biosynthetic routes involved in such auxin production. Confocal microscopy of the DR5rev:GFP Arabidopsis reporter line helped demonstrate that P. citrunum B9-derived auxin is biologically active and is able to significantly enhance auxin signaling in roots during such improved root growth and plant development. Furthermore, the phenotypic growth defects arising from impaired auxin signaling in Arabidopsis taa1 mutant or upon L-Kynurenine treatment of wild-type Arabidopsis seedlings could be significantly alleviated by fungus B9-derived auxin, thus suggesting its positive role in plant growth promotion. Collectively, our results provide clear evidence that the production of auxin is one of the main mechanisms involved in induction of the beneficial plant growth by P. citrinum.
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Affiliation(s)
- Cheng-Yen Chen
- Fungal Patho-Biology, Temasek Life Sciences Laboratory, Singapore, Singapore
| | | | - Naweed I. Naqvi
- Fungal Patho-Biology, Temasek Life Sciences Laboratory, Singapore, Singapore
- Department of Biological Sciences, National University of Singapore, Singapore, Singapore
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11
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Tang J, Li Y, Zhang L, Mu J, Jiang Y, Fu H, Zhang Y, Cui H, Yu X, Ye Z. Biosynthetic Pathways and Functions of Indole-3-Acetic Acid in Microorganisms. Microorganisms 2023; 11:2077. [PMID: 37630637 PMCID: PMC10459833 DOI: 10.3390/microorganisms11082077] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Revised: 08/08/2023] [Accepted: 08/10/2023] [Indexed: 08/27/2023] Open
Abstract
Indole-3-acetic acid (IAA) belongs to the family of auxin indole derivatives. IAA regulates almost all aspects of plant growth and development, and is one of the most important plant hormones. In microorganisms too, IAA plays an important role in growth, development, and even plant interaction. Therefore, mechanism studies on the biosynthesis and functions of IAA in microorganisms can promote the production and utilization of IAA in agriculture. This mini-review mainly summarizes the biosynthesis pathways that have been reported in microorganisms, including the indole-3-acetamide pathway, indole-3-pyruvate pathway, tryptamine pathway, indole-3-acetonitrile pathway, tryptophan side chain oxidase pathway, and non-tryptophan dependent pathway. Some pathways interact with each other through common key genes to constitute a network of IAA biosynthesis. In addition, functional studies of IAA in microorganisms, divided into three categories, have also been summarized: the effects on microorganisms, the virulence on plants, and the beneficial impacts on plants.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | - Zihong Ye
- Zhejiang Provincial Key Laboratory of Biometrology and Inspection & Quarantine, College of Life Sciences, China Jiliang University, Hangzhou 310018, China; (J.T.); (L.Z.)
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12
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Mikheev VS, Struchkova IV, Churkina LM, Brilkina AA, Berezina EV. Several Characteristics of Oidiodendron maius G.L. Barron Important for Heather Plants' Controlled Mycorrhization. J Fungi (Basel) 2023; 9:728. [PMID: 37504716 PMCID: PMC10381259 DOI: 10.3390/jof9070728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 07/03/2023] [Accepted: 07/03/2023] [Indexed: 07/29/2023] Open
Abstract
Oidiodendron maius G.L. Barron is a recognized fungal species capable of forming ericoid mycorrhiza with various positive effects on host plants; therefore, newly found and previously uncharacterized O. maius strains may be valuable for heather plants' controlled mycorrhization. Characteristics of the O. maius F3860 strain were studied, i.e., mycelium growth on various nutrient media and the ability to secrete auxins and enzymes. O. maius F3860 grew rapidly on malt extract agar and potato dextrose agar. It was also able to grow on nutrient media suitable for heather plant cultivation. The presence of the flavonoids rutin and quercetin increased the mycelium growth rate compared to the control, starting from the 8th to the 13th days of cultivation. The ability to secrete auxins was confirmed with bioassay and thin-layer chromatography, and their content, as well as phytase activity, was estimated spectrophotometrically. Both in nutrient media with tryptophan and without it, O. maius F3860 secreted about 6 μg IAA/mL growth medium. O. maius F3860 possessed extracellular phytase, protease, and phenol oxidase activities. The investigation indicates O. maius F3860's promise for heather seedling inoculation as an approach to increase their fitness.
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Affiliation(s)
- Vyacheslav S Mikheev
- Department of Biochemistry and Biotechnology, Institute of Biology and Biomedicine, Lobachevsky State University of Nizhny Novgorod, Gagarin Avenue 23, 603950 Nizhny Novgorod, Russia
| | - Irina V Struchkova
- Department of Biochemistry and Biotechnology, Institute of Biology and Biomedicine, Lobachevsky State University of Nizhny Novgorod, Gagarin Avenue 23, 603950 Nizhny Novgorod, Russia
- LLC "Mikofit", Internatsionalnaya 56b, 606440 Bor, Russia
| | - Ludmila M Churkina
- Department of Biochemistry and Biotechnology, Institute of Biology and Biomedicine, Lobachevsky State University of Nizhny Novgorod, Gagarin Avenue 23, 603950 Nizhny Novgorod, Russia
| | - Anna A Brilkina
- Department of Biochemistry and Biotechnology, Institute of Biology and Biomedicine, Lobachevsky State University of Nizhny Novgorod, Gagarin Avenue 23, 603950 Nizhny Novgorod, Russia
| | - Ekaterina V Berezina
- Department of Biochemistry and Biotechnology, Institute of Biology and Biomedicine, Lobachevsky State University of Nizhny Novgorod, Gagarin Avenue 23, 603950 Nizhny Novgorod, Russia
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13
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Senabio JA, de Campos Pereira F, Pietro-Souza W, Sousa TF, Silva GF, Soares MA. Enhanced mercury phytoremediation by Pseudomonodictys pantanalensis sp. nov. A73 and Westerdykella aquatica P71. Braz J Microbiol 2023; 54:949-964. [PMID: 36857007 PMCID: PMC10235320 DOI: 10.1007/s42770-023-00924-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Accepted: 02/07/2023] [Indexed: 03/02/2023] Open
Abstract
Mercury is a non-essential and toxic metal that induces toxicity in most organisms, but endophytic fungi can develop survival strategies to tolerate and respond to metal contaminants and other environmental stressors. The present study demonstrated the potential of mercury-resistant endophytic fungi in phytoremediation. We examined the functional traits involved in plant growth promotion, phytotoxicity mitigation, and mercury phytoremediation in seven fungi strains. The endophytic isolates synthesized the phytohormone indole-3-acetic acid, secreted siderophores, and solubilized phosphate in vitro. Inoculation of maize (Zea mays) plants with endophytes increased plant growth attributes by up to 76.25%. The endophytic fungi stimulated mercury uptake from the substrate and promoted its accumulation in plant tissues (t test, p < 0.05), preferentially in the roots, which thereby mitigated the impacts of metal phytotoxicity. Westerdykella aquatica P71 and the newly identified species Pseudomonodictys pantanalensis nov. A73 were the isolates that presented the best phytoremediation potential. Assembling and annotation of P. pantanalensis A73 and W. aquatica P71 genomes resulted in genome sizes of 45.7 and 31.8 Mb that encoded 17,774 and 11,240 protein-coding genes, respectively. Some clusters of genes detected were involved in the synthesis of secondary metabolites such as dimethylcoprogen (NRPS) and melanin (T1PKS), which are metal chelators with antioxidant activity; mercury resistance (merA and merR1); oxidative stress (PRX1 and TRX1); and plant growth promotion (trpS and iscU). Therefore, both fungi species are potential tools for the bioremediation of mercury-contaminated soils due to their ability to reduce phytotoxicity and assist phytoremediation.
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Affiliation(s)
- Jaqueline Alves Senabio
- Department of Botany and Ecology, Laboratory of Biotechnology and Microbial Ecology, Institute of Biosciences, Federal University of Mato Grosso, Cuiabá, Mato Grosso 78060-900 Brazil
| | | | - William Pietro-Souza
- Department of Botany and Ecology, Laboratory of Biotechnology and Microbial Ecology, Institute of Biosciences, Federal University of Mato Grosso, Cuiabá, Mato Grosso 78060-900 Brazil
| | | | | | - Marcos Antônio Soares
- Federal University of Mato Grosso UFMT, Av. Fernando Corrêa da Costa, no 2367 Distrito Boa Esperança, Cuiabá, Mato Grosso CEP 78060-900 Brazil
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14
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Ghoreishi G, Barrena R, Font X. Using green waste as substrate to produce biostimulant and biopesticide products through solid-state fermentation. WASTE MANAGEMENT (NEW YORK, N.Y.) 2023; 159:84-92. [PMID: 36738589 DOI: 10.1016/j.wasman.2023.01.026] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 01/10/2023] [Accepted: 01/24/2023] [Indexed: 06/18/2023]
Abstract
Although the use of green waste as a substrate in different types of microbial bioprocessing has a major impact on improving green waste valorization, very little information has been provided on this issue. The purpose of this paper is to study the feasibility of using green waste to produce a biostimulant (Indole-3-acetic acid (IAA)) and biopesticide (conidial spore) through solid-state fermentation. Trichoderma harzianum was selected as the inoculum of the process and the green waste was a mixture of grass clippings and pruning waste. An experiment was designed to study the effect of tryptophan concentration, proportion of grass and pruning waste, and substrate moisture on IAA and spore production. The results show that washing and using phosphate buffer has a beneficial effect on green waste quality in terms of bioproduction. The maximum IAA and spore productions reported in the current study were 101.46 µg g-1 dry matter and 3.03 × 109 spore g-1 dry matter, respectively. According to the results, IAA production increases with a higher amount of tryptophan and grass. However, the number of spores increased with lower amounts of tryptophan and grass. The model suggested the following optimized parameters for the production of spores and IAA: tryptophan 0.45 %, grass 61 %, and moisture 74 %. The effect of fermentation time was also studied, and the results show that the maximum IAA and spore production was obtained on days 3 and 7, respectively.
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Affiliation(s)
- Golafarin Ghoreishi
- GICOM research group, Department of Chemical, Biological and Environmental Engineering, Universitat Autònoma de Barcelona, Edifici Q, Carrer de les Sitges, 08193 Bellaterra (Cerdanyola del Vallès), Barcelona, Spain
| | - Raquel Barrena
- GICOM research group, Department of Chemical, Biological and Environmental Engineering, Universitat Autònoma de Barcelona, Edifici Q, Carrer de les Sitges, 08193 Bellaterra (Cerdanyola del Vallès), Barcelona, Spain.
| | - Xavier Font
- GICOM research group, Department of Chemical, Biological and Environmental Engineering, Universitat Autònoma de Barcelona, Edifici Q, Carrer de les Sitges, 08193 Bellaterra (Cerdanyola del Vallès), Barcelona, Spain
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15
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Digra S, Nonzom S. An insight into endophytic antimicrobial compounds: an updated analysis. PLANT BIOTECHNOLOGY REPORTS 2023; 17:1-31. [PMID: 37359493 PMCID: PMC10013304 DOI: 10.1007/s11816-023-00824-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 12/30/2022] [Accepted: 02/28/2023] [Indexed: 06/28/2023]
Abstract
Resistance in micro-organisms against antimicrobial compounds is an emerging phenomenon in the modern era as compared to the traditional world which brings new challenges to discover novel antimicrobial compounds from different available sources, such as, medicinal plants, various micro-organisms, like, bacteria, fungi, algae, actinomycetes, and endophytes. Endophytes reside inside the plants without exerting any harmful impact on the host plant along with providing ample of benefits. In addition, they are capable of producing diverse antimicrobial compounds similar to their host, allowing them to serve as useful micro-organism for a range of therapeutic purposes. In recent years, a large number of studies on the antimicrobial properties of endophytic fungi have been carried out globally. These antimicrobials have been used to treat various bacterial, fungal, and viral infections in humans. In this review, the potential of fungal endophytes to produce diverse antimicrobial compounds along with their various benefits to their host have been focused on. In addition, classification systems of endophytic fungi as well as the need for antimicrobial production with genetic involvement and some of the vital novel antimicrobial compounds of endophytic origin can further be utilized in the pharmaceutical industries for various formulations along with the role of nanoparticles as antimicrobial agents have been highlighted.
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Affiliation(s)
- Shivani Digra
- Depatment of Botany, University of Jammu, Jammu, J&K 180006 India
| | - Skarma Nonzom
- Depatment of Botany, University of Jammu, Jammu, J&K 180006 India
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16
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Lastochkina O, Aliniaeifard S, SeifiKalhor M, Bosacchi M, Maslennikova D, Lubyanova A. Novel Approaches for Sustainable Horticultural Crop Production: Advances and Prospects. HORTICULTURAE 2022; 8:910. [DOI: 10.3390/horticulturae8100910] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/23/2023]
Abstract
Reduction of plant growth, yield and quality due to diverse environmental constrains along with climate change significantly limit the sustainable production of horticultural crops. In this review, we highlight the prospective impacts that are positive challenges for the application of beneficial microbial endophytes, nanomaterials (NMs), exogenous phytohormones strigolactones (SLs) and new breeding techniques (CRISPR), as well as controlled environment horticulture (CEH) using artificial light in sustainable production of horticultural crops. The benefits of such applications are often evaluated by measuring their impact on the metabolic, morphological and biochemical parameters of a variety of cultures, which typically results in higher yields with efficient use of resources when applied in greenhouse or field conditions. Endophytic microbes that promote plant growth play a key role in the adapting of plants to habitat, thereby improving their yield and prolonging their protection from biotic and abiotic stresses. Focusing on quality control, we considered the effects of the applications of microbial endophytes, a novel class of phytohormones SLs, as well as NMs and CEH using artificial light on horticultural commodities. In addition, the genomic editing of plants using CRISPR, including its role in modulating gene expression/transcription factors in improving crop production and tolerance, was also reviewed.
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17
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Daroodi Z, Taheri P, Tarighi S. Acrophialophora jodhpurensis: an endophytic plant growth promoting fungus with biocontrol effect against Alternaria alternata. FRONTIERS IN PLANT SCIENCE 2022; 13:984583. [PMID: 36212286 PMCID: PMC9540611 DOI: 10.3389/fpls.2022.984583] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/02/2022] [Accepted: 08/31/2022] [Indexed: 06/16/2023]
Abstract
In this study, efficiency of the endophytic fungal isolate Msh5 was evaluated on promoting tomato plant growth and controlling Alternaria alternata, the causal agent of early blight in tomatoes. Morphological and molecular (ITS and tub2 sequences) analyses revealed that the fungal isolate, Msh5, was Acrophialophora jodhpurensis (Chaetomium jodhpurense Lodha). This beneficial fungus was capable of producing indole-3-acetic acid (IAA), urease, siderophore, extracellular enzymes, and solubilized phosphate. Under laboratory conditions, the Msh5 isolate of A. jodhpurensis inhibited A. alternata growth in dual culture, volatile and non-volatile metabolites assays. The supernatant of this endophytic fungus was capable of reducing spore germination and altering the hyphal structure of A. alternata and the spores produced germ tubes showed vacuolization and abnormal structure compared to the control. Also, the effect of A. jodhpurensis on plant growth parameters (such as shoot and root weight and length) and suppressing A. alternata was investigated in vivo via seed inoculation with spores of A. jodhpurensis using 1% sugar, 0.5% carboxymethyl cellulose (CMC) or 0.5% molasses solution as stickers. Colonization of tomato roots by the endophytic fungus resulted in significant increasing plant growth parameters and reduction in the progress of the diseases caused by A. alternata compared to the controls. Among the different coating materials used as stickers, sugar was found to be the most effective for enhancing plant growth parameters and decreasing the disease progress. Therefore, A. jodhpurensis isolate Msh5 can be suggested as a potential biofertilizer and biocontrol agent for protecting tomato plants against A. alternata.
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Affiliation(s)
| | - Parissa Taheri
- Department of Plant Protection, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran
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18
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Chitosan and Gold Nanoparticles Supplementation for Augmentation of Indole-3-Acetic Acid Production by Rhizospheric Pseudomonas aeruginosa and Plant Growth Enhancement. Curr Microbiol 2022; 79:185. [PMID: 35524857 DOI: 10.1007/s00284-022-02850-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2021] [Accepted: 03/18/2022] [Indexed: 11/03/2022]
Abstract
The present study has been focused to evaluate the effect of chitosan nanoparticles (CNPs) and gold nanoparticles (AuNPs) on the phytohormone production by rhizospheric Pseudomonas aeruginosa. The gold nanoparticles were synthesized biologically and characterized by UV-Visible spectrophotometry, transmission electron microscopy, and X-ray diffraction analysis. The indole-3-acetic acid (IAA) production by P. aeruginosa supplemented with CNPs and AuNPs was quantified by using Salkowski's method and confirmed by high-performance liquid chromatography (HPLC) analysis. This revealed the effect of 5 mg/mL CNPs and 100 µg/mL AuNPs to enhance the IAA production by P. aeruginosa. By Salkowski's method, 07.16 ± 0.28 and 09.56 ± 0.28 µg/mL of IAA could be detected in the samples prepared from P. aeruginosa supplemented with 5 mg/mL CNPs and 100 µg/mL AuNPs, respectively. HPLC analysis also confirmed the production of IAA by P. aeruginosa. The CNPs and AuNPs-supplemented P. aeruginosa was also found to have enhancement effect on the shoot length (25.25 ± 0.85 cm and 26.57 ± 0.73 cm) and fresh weight (0.94 ± 0.09 g and 0.96 ± 0.09 g) of Vigna unguiculata plants, which highlight the significance of the study and the agricultural promises of nanomaterials-supplemented rhizobacteria.
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19
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Panichikkal J, Mohanan DP, Koramkulam S, Krishnankutty RE. Chitosan nanoparticles augmented indole-3-acetic acid production by rhizospheric Pseudomonas monteilii. J Basic Microbiol 2022; 62:1467-1474. [PMID: 35510957 DOI: 10.1002/jobm.202100358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Revised: 03/11/2022] [Accepted: 04/07/2022] [Indexed: 11/05/2022]
Abstract
Rhizospheric Pseudomonas spp. are widely used for upgrading sustainable agriculture because of their ability to execute multifaceted plant beneficial functions. In the current study, chitosan nanoparticles (CNPs) were used to analyze their effect on plant beneficial properties of rhizospheric Pseudomonas monteilii. The CNPs were characterized by transmission electron microscopy (TEM) and dynamic light scattering (DLS) analysis. The impact of CNPs on indole-3-acetic acid (IAA) production of P. monteilii was analyzed and quantified by spectrophotometric and confirmed high-performance liquid chromatography analysis. This revealed the beneficial effect of CNPs (1 mg/ml) by enhancing the IAA production of P. monteilii. In planta effect of varied bacterial IAA production was further demonstrated in Vigna unguiculata. Here, enhancement in shoot length (35.79 ± 0.37 cm), leaf number (7 ± 0.54), and fresh weight (3.07 ± 0.11 g) were observed in the plants treated with the culture filtrate collected from P. monteilii cultivated with 1 mg/ml CNPs. The results of the study highlight the beneficial effect of the CNPs to augment the rhizobacterial functioning by inducing the expression of plant beneficial properties.
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Affiliation(s)
- Jishma Panichikkal
- School of Biosciences, Mahatma Gandhi University, Kottayam, Kerala, India
| | - Deepa P Mohanan
- International and Inter-University Centre for Nanoscience and Nanotechnology (IIUCNN), Mahatma Gandhi University, Kottayam, Kerala, India
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20
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Shah S, Shah B, Sharma R, Rekadwad B, Shouche YS, Sharma J, Pant B. Colonization with non-mycorrhizal culturable endophytic fungi enhances orchid growth and indole acetic acid production. BMC Microbiol 2022; 22:101. [PMID: 35418028 PMCID: PMC9006483 DOI: 10.1186/s12866-022-02507-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Accepted: 03/21/2022] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Symbiotic associations of endophytic fungi have been proved by possessing an ability to produce hormones and metabolites for their host plant. Members of the Orchidaceae are obligate mycorrhizal species but a non-mycorrhizal association needs more investigation for their ability to promote plant growth and produce plant growth hormones. In the present study, endophytic fungi were isolated from the roots of Dendrobium longicornu Lindl., to investigate the root colonizing activity and role in plant growth and development. RESULTS Among 23 fungal isolates were identified both by morphological and molecular technique as Penicillium sp., Fusarium sp., Coniochaeta sp., Alternaria sp., and Cladosporium sp. The dominate species were Coniochaeta sp. and Cladosporium sp. The dominant species as per the isolation was Coniochaeta sp. These fungal strains were screened for growth-promoting activity of Cymbidium aloifolium (plantlet) consider as cross genus interaction and Dendrobium longicornu (protocorms) as a host plant in in-vitro condition. Importantly, Cladosporium sp., and Coniochaeta sp. showed successful colonization and peloton formation with roots of C. aloifolium. Moreover, it also enhanced acclimatization of plantlets. Fungal elicitors from nine fungal isolates enhanced the growth of the in vitro grown protocorms of D. longicornu. Key bioactive compounds detected in the fungal colonized plant extract were 2H-pyran-2-one, Cyclopropanecarboxylic acid, Oleic Acid and d-Mannitol, which may have a potential role in plant-microbe interaction. All fungal endophytes were able to synthesize the indole acetic acid (IAA) in presence of tryptophan. Moreover, fungal extract DLCCR7 treated with DL-tryptophan yielded a greater IAA concentration of 43 μg per ml than the other extracts. The iaaM gene involved in IAA synthesis pathway was amplified using iaaM gene primers successfully from Alternaria sp., Cladosporium sp., and Coniochaeta sp. CONCLUSIONS Hence, this study confirms the production of IAA by endophytes and demonstrated their host as well as cross-genus plant growth-promoting potential by producing metabolites required for the growth of the plant.
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Affiliation(s)
- Sujit Shah
- Central Department of Botany, Tribhuvan University, Kathmandu, 44613, Nepal.,Daffodil Agro Biological Research Center, Lalitpur, 44700, Nepal
| | - Biva Shah
- Daffodil Agro Biological Research Center, Lalitpur, 44700, Nepal
| | - Rohit Sharma
- National Centre for Microbial Resource, National Centre for Cell Science, NCCS Complex, Savitribai Phule Pune University Campus, Ganeshkhind, Pune, 411007, India.,School of Sciences, SAGE University, Katara Hills, Bhopal, MP, India
| | - Bhagwan Rekadwad
- National Centre for Microbial Resource, National Centre for Cell Science, NCCS Complex, Savitribai Phule Pune University Campus, Ganeshkhind, Pune, 411007, India.,Division of Microbiology and Biotechnology, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, Karnataka, 575018, India
| | - Yogesh S Shouche
- National Centre for Microbial Resource, National Centre for Cell Science, NCCS Complex, Savitribai Phule Pune University Campus, Ganeshkhind, Pune, 411007, India
| | - Jyotsna Sharma
- Department of Plant and Soil Science, Texas Tech University, Box 42122, Lubbock, TX, 79409, USA
| | - Bijaya Pant
- Central Department of Botany, Tribhuvan University, Kathmandu, 44613, Nepal.
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21
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Baron NC, Rigobelo EC. Endophytic fungi: a tool for plant growth promotion and sustainable agriculture. Mycology 2022. [PMID: 35186412 DOI: 10.1080/215012031945699] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2023] Open
Abstract
Endophytic fungi are found in most, if not all, plant species on the planet. They colonise inner plant tissues without causing symptoms of disease, thus providing benefits to the host plant while also benefiting from this interaction. The global concern for the development of more sustainable agriculture has increased in recent years, and research has been performed to decipher ecology and explore the potential of endophytic interactions in plant growth. To date, many studies point to the positive aspects of endophytic colonisation, and in this review, such research is summarised based on the direct (acquisition of nutrients and phytohormone production) and indirect (induced resistance, production of antibiotics and secondary metabolites, production of siderophores and protection for abiotic and biotic stresses) benefits of endophytic colonisation. An in-depth discussion of the mechanisms is also presented.
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Affiliation(s)
- Noemi Carla Baron
- Agricultural and Livestock Microbiology Post Graduation Program, Department of Plant Production Sciences, School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Access Way Prof. Paulo Donato Castellane, São Paulo, Brazil
| | - Everlon Cid Rigobelo
- Agricultural and Livestock Microbiology Post Graduation Program, Department of Plant Production Sciences, School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Access Way Prof. Paulo Donato Castellane, São Paulo, Brazil
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22
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Abstract
Endophytic fungi are found in most, if not all, plant species on the planet. They colonise inner plant tissues without causing symptoms of disease, thus providing benefits to the host plant while also benefiting from this interaction. The global concern for the development of more sustainable agriculture has increased in recent years, and research has been performed to decipher ecology and explore the potential of endophytic interactions in plant growth. To date, many studies point to the positive aspects of endophytic colonisation, and in this review, such research is summarised based on the direct (acquisition of nutrients and phytohormone production) and indirect (induced resistance, production of antibiotics and secondary metabolites, production of siderophores and protection for abiotic and biotic stresses) benefits of endophytic colonisation. An in-depth discussion of the mechanisms is also presented.
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Affiliation(s)
- Noemi Carla Baron
- Agricultural and Livestock Microbiology Post Graduation Program, Department of Plant Production Sciences, School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Access Way Prof. Paulo Donato Castellane, São Paulo, Brazil
| | - Everlon Cid Rigobelo
- Agricultural and Livestock Microbiology Post Graduation Program, Department of Plant Production Sciences, School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Access Way Prof. Paulo Donato Castellane, São Paulo, Brazil
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23
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Endophytic fungal communities and their biotechnological implications for agro-environmental sustainability. Folia Microbiol (Praha) 2022; 67:203-232. [PMID: 35122218 DOI: 10.1007/s12223-021-00939-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Accepted: 12/07/2021] [Indexed: 02/05/2023]
Abstract
Endophytic fungal communities have attracted a great attention to chemists, ecologists, and microbiologists as a treasure trove of biological resource. Endophytic fungi play incredible roles in the ecosystem including abiotic and biotic stress tolerance, eco-adaptation, enhancing growth and development, and maintaining the health of their host. In recent times, endophytic fungi have drawn a special focus owing to their indispensable diversity, unique distribution, and unparalleled metabolic pathways. The endophytic fungal communities belong to three phyla, namely Mucoromycota, Basidiomycota, and Ascomycota with seven predominant classes Agaricomycetes, Dothideomycetes, Eurotiomycetes, Mortierellomycotina, Mucoromycotina, Saccharomycetes, and Sordariomycetes. In a review of a huge number of research finding, it was found that endophytic fungal communities of genera Aspergillus, Chaetomium, Fusarium, Gaeumannomyces, Metarhizium, Microsphaeropsis, Paecilomyces, Penicillium, Piriformospora, Talaromyces, Trichoderma, Verticillium, and Xylaria have been sorted out and well characterized for diverse biotechnological applications for future development. Furthermore, these communities are remarkable source of novel bioactive compounds with amazing biological activity for use in agriculture, food, and pharmaceutical industry. Endophytes are endowed with a broad range of structurally unique bioactive natural products, including alkaloids, benzopyranones, chinones, flavonoids, phenolic acids, and quinines. Subsequently, there is still an excellent opportunity to explore novel compounds from endophytic fungi among numerous plants inhabiting different niches. Furthermore, high-throughput sequencing could be a tool to study interaction between plants and endophytic fungi which may provide further opportunities to reveal unknown functions of endophytic fungal communities. The present review deals with the biodiversity of endophytic fungal communities and their biotechnological implications for agro-environmental sustainability.
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The Role of Plant Hormones in the Interaction of Colletotrichum Species with Their Host Plants. Int J Mol Sci 2021; 22:ijms222212454. [PMID: 34830343 PMCID: PMC8620030 DOI: 10.3390/ijms222212454] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Revised: 11/12/2021] [Accepted: 11/15/2021] [Indexed: 11/17/2022] Open
Abstract
Colletotrichum is a plant pathogenic fungus which is able to infect virtually every economically important plant species. Up to now no common infection mechanism has been identified comparing different plant and Colletotrichum species. Plant hormones play a crucial role in plant-pathogen interactions regardless whether they are symbiotic or pathogenic. In this review we analyze the role of ethylene, abscisic acid, jasmonic acid, auxin and salicylic acid during Colletotrichum infections. Different Colletotrichum strains are capable of auxin production and this might contribute to virulence. In this review the role of different plant hormones in plant—Colletotrichum interactions will be discussed and thereby auxin biosynthetic pathways in Colletotrichum spp. will be proposed.
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Xie J, Dawwam GE, Sehim AE, Li X, Wu J, Chen S, Zhang D. Drought Stress Triggers Shifts in the Root Microbial Community and Alters Functional Categories in the Microbial Gene Pool. Front Microbiol 2021; 12:744897. [PMID: 34745045 PMCID: PMC8566882 DOI: 10.3389/fmicb.2021.744897] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Accepted: 09/21/2021] [Indexed: 11/13/2022] Open
Abstract
Drought is a major threat to crop productivity and causes decreased plant growth, poor yields, and crop failure. Nevertheless, the frequency of droughts is expected to increase in the coming decades. The microbial communities associated with crop plants can influence how plants respond to various stresses; hence, microbiome manipulation is fast becoming an effective strategy for improving the stress tolerance of plants. The effect of drought stress on the root microbiome of perennial woody plants is currently poorly understood. Using Populus trees as a model ecosystem, we found that the diversity of the root microbial community decreased during drought treatment and that compositional shifts in microbes during drought stress were driven by the relative abundances of a large number of dominant phyla, including Actinobacteria, Firmicutes, and Proteobacteria. A subset of microbes, including Streptomyces rochei, Bacillus arbutinivorans, B. endophyticus, B. megaterium, Aspergillus terreus, Penicillium raperi, Trichoderma ghanense, Gongronella butleri, and Rhizopus stolonifer, was isolated from the drought-treated poplar rhizosphere soils, which have potentially beneficial to plant fitness. Further controlled inoculation experiments showed that the isolated bacterial and fungal isolates positively impacted plant growth and drought tolerance. Collectively, our results demonstrate the impact of drought on root microbiome structure and provide a novel example of manipulating root microbiomes to improve plant tolerance.
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Affiliation(s)
- Jianbo Xie
- National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.,Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
| | - Ghada E Dawwam
- National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.,Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.,Botany and Microbiology Department, Faculty of Science, Benha University, Benha, Egypt
| | - Amira E Sehim
- National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.,Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.,Botany and Microbiology Department, Faculty of Science, Benha University, Benha, Egypt
| | - Xian Li
- National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.,Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
| | - Jiadong Wu
- National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.,Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
| | - Sisi Chen
- National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.,Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
| | - Deqiang Zhang
- National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.,Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
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Bunsangiam S, Thongpae N, Limtong S, Srisuk N. Large scale production of indole-3-acetic acid and evaluation of the inhibitory effect of indole-3-acetic acid on weed growth. Sci Rep 2021; 11:13094. [PMID: 34158557 PMCID: PMC8219710 DOI: 10.1038/s41598-021-92305-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2021] [Accepted: 06/02/2021] [Indexed: 12/02/2022] Open
Abstract
Indole-3-acetic acid (IAA) is the most common plant hormone of the auxin class and regulates various plant growth processes. The present study investigated IAA production by the basidiomycetous yeast Rhodosporidiobolus fluvialis DMKU-CP293 using the one-factor-at-a-time (OFAT) method and response surface methodology (RSM). IAA production was optimized in shake-flask culture using a cost-effective medium containing 4.5% crude glycerol, 2% CSL and 0.55% feed-grade l-tryptophan. The optimized medium resulted in a 3.3-fold improvement in IAA production and a 3.6-fold reduction in cost compared with those obtained with a non-optimized medium. Production was then scaled up to a 15-L bioreactor and to a pilot-scale (100-L) bioreactor based on the constant impeller tip speed (Vtip) strategy. By doing so, IAA was successfully produced at a concentration of 3569.32 mg/L at the pilot scale. To the best of our knowledge, this is the first report of pilot-scale IAA production by microorganisms. In addition, we evaluated the effect of crude IAA on weed growth. The results showed that weed (Cyperus rotundus L.) growth could be inhibited by 50 mg/L of crude IAA. IAA therefore has the potential to be developed as a herbicidal bioproduct to replace the chemical herbicides that have been banned in various countries, including Thailand.
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Affiliation(s)
- Sakaoduoen Bunsangiam
- Department of Microbiology, Faculty of Science, Kasetsart University, Chatuchak, Bangkok, 10900, Thailand
| | - Nutnaree Thongpae
- Department of Microbiology, Faculty of Science, Kasetsart University, Chatuchak, Bangkok, 10900, Thailand
| | - Savitree Limtong
- Department of Microbiology, Faculty of Science, Kasetsart University, Chatuchak, Bangkok, 10900, Thailand.,Academy of Science, Royal Society of Thailand, Bangkok, 10300, Thailand
| | - Nantana Srisuk
- Department of Microbiology, Faculty of Science, Kasetsart University, Chatuchak, Bangkok, 10900, Thailand.
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Biological potential of bioactive metabolites derived from fungal endophytes associated with medicinal plants. Mycol Prog 2021. [DOI: 10.1007/s11557-021-01695-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Frerigmann H, Piotrowski M, Lemke R, Bednarek P, Schulze-Lefert P. A Network of Phosphate Starvation and Immune-Related Signaling and Metabolic Pathways Controls the Interaction between Arabidopsis thaliana and the Beneficial Fungus Colletotrichum tofieldiae. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2021; 34:560-570. [PMID: 33226310 DOI: 10.1094/mpmi-08-20-0233-r] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The beneficial root-colonizing fungus Colletotrichum tofieldiae mediates plant growth promotion (PGP) upon phosphate (Pi) starvation in Arabidopsis thaliana. This activity is dependent on the Trp metabolism of the host, including indole glucosinolate (IG) hydrolysis. Here, we show that C. tofieldiae resolves several Pi starvation-induced molecular processes in the host, one of which is the downregulation of auxin signaling in germ-free plants, which is restored in the presence of the fungus. Using CRISPR/Cas9 genome editing, we generated an Arabidopsis triple mutant lacking three homologous nitrilases (NIT1 to NIT3) that are thought to link IG-hydrolysis products with auxin biosynthesis. Retained C. tofieldiae-induced PGP in nit1/2/3 mutant plants demonstrated that this metabolic connection is dispensable for the beneficial activity of the fungus. This suggests that either there is an alternative metabolic link between IG-hydrolysis products and auxin biosynthesis, or C. tofieldiae restores auxin signaling independently of IG metabolism. We show that C. tofieldiae, similar to pathogenic microorganisms, triggers Arabidopsis immune pathways that rely on IG metabolism as well as salicylic acid and ethylene signaling. Analysis of IG-deficient myb mutants revealed that these metabolites are, indeed, important for control of in planta C. tofieldiae growth: however, enhanced C. tofieldiae biomass does not necessarily negatively correlate with PGP. We show that Pi deficiency enables more efficient colonization of Arabidopsis by C. tofieldiae, possibly due to the MYC2-mediated repression of ethylene signaling and changes in the constitutive IG composition in roots.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
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Affiliation(s)
- Henning Frerigmann
- Max Planck Institute for Plant Breeding Research, Department of Plant Microbe Interactions and Cluster of Excellence on Plant Sciences (CEPLAS), D-50829 Cologne, Germany
- Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland
| | - Markus Piotrowski
- Lehrstuhl für Molekulargenetik und Physiologie der Pflanzen, Ruhr-Universität Bochum, D-44801 Bochum, Germany
| | - René Lemke
- Lehrstuhl für Molekulargenetik und Physiologie der Pflanzen, Ruhr-Universität Bochum, D-44801 Bochum, Germany
| | - Paweł Bednarek
- Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland
| | - Paul Schulze-Lefert
- Max Planck Institute for Plant Breeding Research, Department of Plant Microbe Interactions and Cluster of Excellence on Plant Sciences (CEPLAS), D-50829 Cologne, Germany
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Ismail MA, Amin MA, Eid AM, Hassan SED, Mahgoub HAM, Lashin I, Abdelwahab AT, Azab E, Gobouri AA, Elkelish A, Fouda A. Comparative Study between Exogenously Applied Plant Growth Hormones versus Metabolites of Microbial Endophytes as Plant Growth-Promoting for Phaseolus vulgaris L. Cells 2021; 10:cells10051059. [PMID: 33946942 PMCID: PMC8146795 DOI: 10.3390/cells10051059] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Revised: 04/23/2021] [Accepted: 04/26/2021] [Indexed: 12/19/2022] Open
Abstract
Microbial endophytes organize symbiotic relationships with the host plant, and their excretions contain diverse plant beneficial matter such as phytohormones and bioactive compounds. In the present investigation, six bacterial and four fungal strains were isolated from the common bean (Phaseolus vulgaris L.) root plant, identified using molecular techniques, and their growth-promoting properties were reviewed. All microbial isolates showed varying activities to produce indole-3-acetic acid (IAA) and different hydrolytic enzymes such as amylase, cellulase, protease, pectinase, and xylanase. Six bacterial endophytic isolates displayed phosphate-solubilizing capacity and ammonia production. We conducted a field experiment to evaluate the promotion activity of the metabolites of the most potent endophytic bacterial (Bacillus thuringiensis PB2 and Brevibacillus agri PB5) and fungal (Alternaria sorghi PF2 and, Penicillium commune PF3) strains in comparison to two exogenously applied hormone, IAA, and benzyl adenine (BA), on the growth and biochemical characteristics of the P. vulgaris L. Interestingly, our investigations showed that bacterial and fungal endophytic metabolites surpassed the exogenously applied hormones in increasing the plant biomass, photosynthetic pigments, carbohydrate and protein contents, antioxidant enzyme activity, endogenous hormones and yield traits. Our findings illustrate that the endophyte Brevibacillus agri (PB5) provides high potential as a stimulator for the growth and productivity of common bean plants.
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Affiliation(s)
- Mohamed A. Ismail
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (M.A.I.); (M.A.A.); (A.M.E.); or (H.A.M.M.); (I.L.); (A.T.A.)
| | - Mohamed A. Amin
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (M.A.I.); (M.A.A.); (A.M.E.); or (H.A.M.M.); (I.L.); (A.T.A.)
| | - Ahmed M. Eid
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (M.A.I.); (M.A.A.); (A.M.E.); or (H.A.M.M.); (I.L.); (A.T.A.)
| | - Saad El-Din Hassan
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (M.A.I.); (M.A.A.); (A.M.E.); or (H.A.M.M.); (I.L.); (A.T.A.)
- Correspondence: (S.E.-D.H.); (A.F.); Tel.: +20-102-3884804 (S.E.-D.H.); +20-111-3351244 (A.F.)
| | - Hany A. M. Mahgoub
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (M.A.I.); (M.A.A.); (A.M.E.); or (H.A.M.M.); (I.L.); (A.T.A.)
| | - Islam Lashin
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (M.A.I.); (M.A.A.); (A.M.E.); or (H.A.M.M.); (I.L.); (A.T.A.)
- Department of Biology, Faculty of Science and Arts, Al Mandaq, Albaha University, Al-Baha 1988, Saudi Arabia
| | - Abdelrhman T. Abdelwahab
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (M.A.I.); (M.A.A.); (A.M.E.); or (H.A.M.M.); (I.L.); (A.T.A.)
- Department of Botany Science, Faculty of Science, Northern Border University, Arar 73211, Saudi Arabia
| | - Ehab Azab
- Department of Nutrition and Food Science, College of Science, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia;
| | - Adil A. Gobouri
- Department of Chemistry, College of Science, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia;
| | - Amr Elkelish
- Botany and Microbiology Department, Faculty of Science, Suez Canal University, Ismailia 41511, Egypt; or
- Department of Plant Physiology, Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich-Schiller-University Jena, 07743 Jena, Germany
| | - Amr Fouda
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (M.A.I.); (M.A.A.); (A.M.E.); or (H.A.M.M.); (I.L.); (A.T.A.)
- Correspondence: (S.E.-D.H.); (A.F.); Tel.: +20-102-3884804 (S.E.-D.H.); +20-111-3351244 (A.F.)
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Jahn L, Hofmann U, Ludwig-Müller J. Indole-3-Acetic Acid Is Synthesized by the Endophyte Cyanodermella asteris via a Tryptophan-Dependent and -Independent Way and Mediates the Interaction with a Non-Host Plant. Int J Mol Sci 2021; 22:2651. [PMID: 33800748 PMCID: PMC7961953 DOI: 10.3390/ijms22052651] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Revised: 02/26/2021] [Accepted: 03/02/2021] [Indexed: 11/17/2022] Open
Abstract
The plant hormone indole-3-acetic acid (IAA) is one of the main signals playing a role in the communication between host and endophytes. Endophytes can synthesize IAA de novo to influence the IAA homeostasis in plants. Although much is known about IAA biosynthesis in microorganisms, there is still less known about the pathway by which IAA is synthesized in fungal endophytes. The aim of this study is to examine a possible IAA biosynthesis pathway in Cyanodermella asteris. In vitro cultures of C. asteris were incubated with the IAA precursors tryptophan (Trp) and indole, as well as possible intermediates, and they were additionally treated with IAA biosynthesis inhibitors (2-mercaptobenzimidazole and yucasin DF) to elucidate possible IAA biosynthesis pathways. It was shown that (a) C. asteris synthesized IAA without adding precursors; (b) indole-3-acetonitrile (IAN), indole-3-acetamide (IAM), and indole-3-acetaldehyde (IAD) increased IAA biosynthesis; and (c) C. asteris synthesized IAA also by a Trp-independent pathway. Together with the genome information of C. asteris, the possible IAA biosynthesis pathways found can improve the understanding of IAA biosynthesis in fungal endophytes. The uptake of fungal IAA into Arabidopsis thaliana is necessary for the induction of lateral roots and other fungus-related growth phenotypes, since the application of the influx inhibitor 2-naphthoxyacetic acid (NOA) but not the efflux inhibitor N-1-naphtylphthalamic acid (NPA) were altering these parameters. In addition, the root phenotype of the mutation in an influx carrier, aux1, was partially rescued by C. asteris.
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Affiliation(s)
| | | | - Jutta Ludwig-Müller
- Institute of Botany, Faculty of Biology, Technische Universität Dresden, 01062 Dresden, Germany; (L.J.); (U.H.)
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Wu H, Yang J, Shen P, Li Q, Wu W, Jiang X, Qin L, Huang J, Cao X, Qi F. High-Level Production of Indole-3-acetic Acid in the Metabolically Engineered Escherichia coli. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2021; 69:1916-1924. [PMID: 33541074 DOI: 10.1021/acs.jafc.0c08141] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Indole-3-acetic acid (IAA) is a critical plant hormone that regulates cell division, development, and metabolism. IAA synthesis in plants and plant-associated microorganisms cannot fulfill the requirement for large-scale agricultural production. Here, two novel IAA biosynthesis pathways, tryptamine (TAM) and indole-3-acetamide (IAM), were developed for IAA production by whole-cell catalysis and de novo biosynthesis in an engineered Escherichia coli MG1655. When 10 g/L l-tryptophan was used as a substrate, an MIA-6 strain containing a heterologous IAM pathway had the highest IAA titer of 7.10 g/L (1.34 × 103 mg/g DCW), which was 98.4 times more than MTAI-5 containing the TAM pathway by whole-cell catalysis. De novo IAA biosynthesis was optimized by improving NAD(P)H availability, resulting in an increased IAA titer of 906 mg/L obtained by the MGΔadhE::icd strain, which is 29.7% higher than the control. These strategies exhibit the potential for IAA production in engineered E. coli and possible industrial applications.
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Affiliation(s)
- Hongxuan Wu
- Engineering Research Center of Industrial Microbiology of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou 350117, Fujian, China
| | - Jinhua Yang
- Engineering Research Center of Industrial Microbiology of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou 350117, Fujian, China
| | - Peijie Shen
- Engineering Research Center of Industrial Microbiology of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou 350117, Fujian, China
| | - Qingchen Li
- Provincial University Key Laboratory of Cellular Stress Response and Metabolic Regulation and Provincial University Engineering Research Center of Industrial Biocatalysis, Fujian Normal University, Fuzhou, Fujian 350117, China
| | - Weibin Wu
- Fujian Vocational College of Bio-engineering, Fuzhou, Fujian 350002, China
| | - Xianzhang Jiang
- Engineering Research Center of Industrial Microbiology of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou 350117, Fujian, China
| | - Lina Qin
- Engineering Research Center of Industrial Microbiology of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou 350117, Fujian, China
| | - Jianzhong Huang
- Engineering Research Center of Industrial Microbiology of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou 350117, Fujian, China
| | - Xiao Cao
- Fujian Vocational College of Bio-engineering, Fuzhou, Fujian 350002, China
| | - Feng Qi
- Engineering Research Center of Industrial Microbiology of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou 350117, Fujian, China
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Laird TS, Flores N, Leveau JHJ. Bacterial catabolism of indole-3-acetic acid. Appl Microbiol Biotechnol 2020; 104:9535-9550. [PMID: 33037916 DOI: 10.1007/s00253-020-10938-9] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 09/21/2020] [Accepted: 09/27/2020] [Indexed: 12/18/2022]
Abstract
Indole-3-acetic acid (IAA) is a molecule with the chemical formula C10H9NO2, with a demonstrated presence in various environments and organisms, and with a biological function in several of these organisms, most notably in plants where it acts as a growth hormone. The existence of microorganisms with the ability to catabolize or assimilate IAA has long been recognized. To date, two sets of gene clusters underlying this property in bacteria have been identified and characterized: one (iac) is responsible for the aerobic degradation of IAA into catechol, and another (iaa) for the anaerobic conversion of IAA to 2-aminobenzoyl-CoA. Here, we summarize the literature on the products, reactions, and pathways that these gene clusters encode. We explore two hypotheses about the benefit that iac/iaa gene clusters confer upon their bacterial hosts: (1) exploitation of IAA as a source of carbon, nitrogen, and energy; and (2) interference with IAA-dependent processes and functions in other organisms, including plants. The evidence for both hypotheses will be reviewed for iac/iaa-carrying model strains of Pseudomonas putida, Enterobacter soli, Acinetobacter baumannii, Paraburkholderia phytofirmans, Caballeronia glathei, Aromatoleum evansii, and Aromatoleum aromaticum, more specifically in the context of access to IAA in the environments from which these bacteria were originally isolated, which include not only plants, but also soils and sediment, as well as patients in hospital environments. We end the mini-review with an outlook for iac/iaa-inspired research that addresses current gaps in knowledge, biotechnological applications of iac/iaa-encoded enzymology, and the use of IAA-destroying bacteria to treat pathologies related to IAA excess in plants and humans. KEY POINTS: • The iac/iaa gene clusters encode bacterial catabolism of the plant growth hormone IAA. • Plants are not the only environment where IAA or IAA-degrading bacteria can be found. • The iac/iaa genes allow growth at the expense of IAA; other benefits remain unknown.
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Affiliation(s)
- Tyler S Laird
- Department of Plant Pathology, University of California Davis, Davis, CA, 95616, USA
| | - Neptali Flores
- Department of Plant Pathology, University of California Davis, Davis, CA, 95616, USA
| | - Johan H J Leveau
- Department of Plant Pathology, University of California Davis, Davis, CA, 95616, USA.
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Cruz JS, da Silva CA, Hamerski L. Natural Products from Endophytic Fungi Associated with Rubiaceae Species. J Fungi (Basel) 2020; 6:E128. [PMID: 32784526 PMCID: PMC7558492 DOI: 10.3390/jof6030128] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Revised: 07/22/2020] [Accepted: 07/24/2020] [Indexed: 02/06/2023] Open
Abstract
This review presents the chemical diversity and pharmacological properties of secondary metabolites produced by endophytic fungi associated with various genera of Rubiaceae. Several classes of natural products are described for these endophytes, although, this study highlights the importance of some metabolites, which are involved in antifungal, antibacterial, anti-protozoal activities; neurodegenerative diseases; cytotoxic activity; anti-inflammatory and antioxidant activity; and hyperglycemic control.
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Affiliation(s)
- Jacqueline Santos Cruz
- Department of Chemistry, Military Institute of Engineering, Praça General Tibúrcio 80, Rio de Janeiro 22290-270, Brazil;
| | - Carla Amaral da Silva
- Walter Mors Institute of Research on Natural Products, Federal University of Rio de Janeiro, Rua Carlos Chagas Filho 373, Rio de Janeiro 21941-902, Brazil;
| | - Lidilhone Hamerski
- Walter Mors Institute of Research on Natural Products, Federal University of Rio de Janeiro, Rua Carlos Chagas Filho 373, Rio de Janeiro 21941-902, Brazil;
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Turbat A, Rakk D, Vigneshwari A, Kocsubé S, Thu H, Szepesi Á, Bakacsy L, D. Škrbić B, Jigjiddorj EA, Vágvölgyi C, Szekeres A. Characterization of the Plant Growth-Promoting Activities of Endophytic Fungi Isolated from Sophora flavescens. Microorganisms 2020; 8:microorganisms8050683. [PMID: 32392856 PMCID: PMC7284388 DOI: 10.3390/microorganisms8050683] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Revised: 05/05/2020] [Accepted: 05/06/2020] [Indexed: 11/24/2022] Open
Abstract
Endophytic fungi in symbiotic association with their host plant are well known to improve plant growth and reduce the adverse effects of both biotic and abiotic stresses. Therefore, fungal endophytes are beginning to receive increased attention in an effort to find growth-promoting strains that could be applied to enhance crop yield and quality. In our study, the plant growth-promoting activities of endophytic fungi isolated from various parts of Sophora flavescens (a medicinally important plant in Mongolia and China) have been revealed and investigated. Fungal isolates were identified using molecular taxonomical methods, while their plant growth-promoting abilities were evaluated in plate assays. Altogether, 15 strains were isolated, representing the genera Alternaria, Didymella, Fusarium and Xylogone. Five of the isolates possessed phosphate solubilization activities and twelve secreted siderophores, while all of them were able to produce indoleacetic acid (IAA) in the presence or absence of tryptophan. The endogenous and exogenous accumulation of IAA were also monitored in liquid cultures using the HPLC-MS/MS technique to refine the plate assay results. Furthermore, for the highest IAA producer fungi, the effects of their extracts were also examined in plant bioassays. In these tests, the primary root lengths of the model Arabidopsis thaliana were increased in several cases, while the biomasses were significantly lower than the control IAA treatment. Significant alterations have also been detected in the photosynthetic pigment (chlorophyll-a, -b and carotenoids) content due to the fungal extract treatments, but these changes did not show any specific trends.
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Affiliation(s)
- Adiyadolgor Turbat
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, H-6726 Szeged, Hungary; (A.T.); (D.R.); (A.V.); (S.K.); (H.T.); (C.V.)
- Doctoral School in Biology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary
| | - Dávid Rakk
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, H-6726 Szeged, Hungary; (A.T.); (D.R.); (A.V.); (S.K.); (H.T.); (C.V.)
- Doctoral School in Biology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary
| | - Aruna Vigneshwari
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, H-6726 Szeged, Hungary; (A.T.); (D.R.); (A.V.); (S.K.); (H.T.); (C.V.)
| | - Sándor Kocsubé
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, H-6726 Szeged, Hungary; (A.T.); (D.R.); (A.V.); (S.K.); (H.T.); (C.V.)
| | - Huynh Thu
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, H-6726 Szeged, Hungary; (A.T.); (D.R.); (A.V.); (S.K.); (H.T.); (C.V.)
- Doctoral School in Biology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary
| | - Ágnes Szepesi
- Department of Plant Biology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, H-6726 Szeged, Hungary; (Á.S.); (L.B.)
| | - László Bakacsy
- Department of Plant Biology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, H-6726 Szeged, Hungary; (Á.S.); (L.B.)
| | - Biljana D. Škrbić
- Faculty of Technology, University of Novi Sad, Bulevar cara Lazara 1, 21000 Novi Sad, Serbia;
| | - Enkh-Amgalan Jigjiddorj
- Laboratory of Microbiology, Institute of General and Experimental Biology, Mongolian Academy of Science, Ulaanbaatar 13330, Mongolia;
| | - Csaba Vágvölgyi
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, H-6726 Szeged, Hungary; (A.T.); (D.R.); (A.V.); (S.K.); (H.T.); (C.V.)
| | - András Szekeres
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, H-6726 Szeged, Hungary; (A.T.); (D.R.); (A.V.); (S.K.); (H.T.); (C.V.)
- Correspondence:
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Kumla J, Suwannarach N, Matsui K, Lumyong S. Biosynthetic pathway of indole-3-acetic acid in ectomycorrhizal fungi collected from northern Thailand. PLoS One 2020; 15:e0227478. [PMID: 31899917 PMCID: PMC6941825 DOI: 10.1371/journal.pone.0227478] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2019] [Accepted: 12/20/2019] [Indexed: 01/09/2023] Open
Abstract
Indole-3-acetic acid (IAA) is an imperative phytohormone for plant growth and development. Ectomycorrhizal fungi (ECM) are able to produce IAA. However, only a few studies on IAA biosynthesis pathways in ECM fungi have been reported. This study aimed to investigate the IAA biosynthesis pathway of six ECM cultures including Astraeus odoratus, Gyrodon suthepensis, Phlebopus portentosus, Pisolithus albus, Pisolithus orientalis and Scleroderma suthepense. The results showed that all ECM fungi produced IAA in liquid medium that had been supplemented with L-tryptophan. Notably, fungal IAA levels vary for different fungal species. The detection of indole-3-lactic acid and indole-3-ethanol in the crude culture extracts of all ECM fungi indicated an enzymatic reduction of indole-3-pyruvic acid and indole-3-acetaldehyde, respectively in the IAA biosynthesis via the indole-3-pyruvic acid pathway. Moreover, the tryptophan aminotransferase activity confirmed that all ECM fungi synthesize IAA through the indole-3-pyruvic acid pathway. Additionally, the elongation of rice and oat coleoptiles was stimulated by crude culture extract. This is the first report of the biosynthesis pathway of IAA in the tested ECM fungi.
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Affiliation(s)
- Jaturong Kumla
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai Thailand
| | - Nakarin Suwannarach
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai Thailand
| | - Kenji Matsui
- Graduate School of Sciences and Technology for Innovation, Faculty of Agriculture, Yamaguchi University, Yamaguchi, 7 Japan
| | - Saisamorn Lumyong
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai Thailand
- Academy of Science, The Royal Society of Thailand, Bangkok, Thailand
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Applications of Fungal Strains with Keratin-Degrading and Plant Growth Promoting Characteristics. AGRONOMY-BASEL 2019. [DOI: 10.3390/agronomy9090543] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Protein hydrolysates (PHs) are organic non-microbial biostimulants having beneficial effects on plants. The study was designed to assess the effects on plants by the applications of PHs obtained from Trichoderma isolates grown on keratin wastes. Trichoderma isolates were characterized for indole-3-acetic acid and siderophores production, activity of lytic enzymes, phosphorous solubilization and inhibition of pathogens growth, using qualitative specific tests. Fungal isolates were cultured on a medium with keratin wastes (wool and feathers) to obtain PHs. Fungal PHs were tested in vivo for plant biostimulant action, as follows: (i) seeds germination test; (ii) activation of plant proton pump; (iii) evaluation of effect on tomato seedling growth. PHs from T. asperellum cultured on feathers medium reached the highest values for all parameters recorded (plant height and diameter, number of leaves and branches), with the exception of those for plant biomass, which were maximum for the wool medium. The metabolites released by keratin degradation under the activity of selected T. asperellum isolate improved crop health and productivity. The use of PHs can be a reasonable solution for the environmental pollution of by-products from the food chain, as well as for the replacement of chemical fertilizers with microbial formulations to stimulate plant growth.
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