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Zheng Z, Sun Z, Qi F, Fang Y, Lin K, Pavan S, Huang B, Dong W, Du P, Tian M, Shi L, Xu J, Han S, Liu H, Qin L, Zhang Z, Dai X, Miao L, Zhao R, Wang J, Liao Y, Li A, Ruan J, Delvento C, Aiese Cigliano R, Maliepaard C, Bai Y, Visser RGF, Zhang X. Chloroplast and whole-genome sequencing shed light on the evolutionary history and phenotypic diversification of peanuts. Nat Genet 2024; 56:1975-1984. [PMID: 39138385 PMCID: PMC11387195 DOI: 10.1038/s41588-024-01876-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Accepted: 07/18/2024] [Indexed: 08/15/2024]
Abstract
Cultivated peanut (Arachis hypogaea L.) is a widely grown oilseed crop worldwide; however, the events leading to its origin and diversification are not fully understood. Here by combining chloroplast and whole-genome sequence data from a large germplasm collection, we show that the two subspecies of A. hypogaea (hypogaea and fastigiata) likely arose from distinct allopolyploidization and domestication events. Peanut genetic clusters were then differentiated in relation to dissemination routes and breeding efforts. A combination of linkage mapping and genome-wide association studies allowed us to characterize genes and genomic regions related to main peanut morpho-agronomic traits, namely flowering pattern, inner tegument color, growth habit, pod/seed weight and oil content. Together, our findings shed light on the evolutionary history and phenotypic diversification of peanuts and might be of broad interest to plant breeders.
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Affiliation(s)
- Zheng Zheng
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China.
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China.
- The Shennong Laboratory, Zhengzhou, China.
| | - Ziqi Sun
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
- The Shennong Laboratory, Zhengzhou, China
| | - Feiyan Qi
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
- The Shennong Laboratory, Zhengzhou, China
| | - Yuanjin Fang
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Ke Lin
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Stefano Pavan
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
- Department of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy
| | - Bingyan Huang
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Wenzhao Dong
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Pei Du
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
- The Shennong Laboratory, Zhengzhou, China
| | - Mengdi Tian
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Lei Shi
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
- The Shennong Laboratory, Zhengzhou, China
| | - Jing Xu
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Suoyi Han
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Hua Liu
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Li Qin
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Zhongxin Zhang
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Xiaodong Dai
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Lijuan Miao
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Ruifang Zhao
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Juan Wang
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
| | - Yanlin Liao
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China
- The Shennong Laboratory, Zhengzhou, China
- Plant Breeding, Wageningen University and Research, Wageningen, The Netherlands
| | - Alun Li
- Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Jue Ruan
- Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Chiara Delvento
- Department of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy
| | | | - Chris Maliepaard
- Plant Breeding, Wageningen University and Research, Wageningen, The Netherlands
| | - Yuling Bai
- Plant Breeding, Wageningen University and Research, Wageningen, The Netherlands
| | - Richard G F Visser
- Plant Breeding, Wageningen University and Research, Wageningen, The Netherlands
| | - Xinyou Zhang
- Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
- Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Zhengzhou, China.
- National Innovation Centre for Bio-breeding Industry, Xinxiang, China.
- The Shennong Laboratory, Zhengzhou, China.
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Ning K, Sun T, Wang Z, Li H, Fang P, Cai X, Wu X, Xu M, Xu P. Selective penetration of fullerenol through pea seed coats mitigates osmosis-repressed germination via chromatin remodeling and transcriptional reprograming. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2024; 104:6008-6017. [PMID: 38437455 DOI: 10.1002/jsfa.13429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Revised: 02/26/2024] [Accepted: 02/28/2024] [Indexed: 03/06/2024]
Abstract
BACKGROUND The alteration of chromatin accessibility plays an important role in plant responses to abiotic stress. Carbon-based nanomaterials (CBNMs) have attracted increasing interest in agriculture due to their potential impact on crop productivity, showcasing effects on plant biological processes at transcriptional levels; however, their impact on chromatin accessibility remains unknown. RESULTS This study found that fullerenol can penetrate the seed coat of pea to mitigate the reduction of seed germination caused by osmotic stress. RNA sequencing (RNA-seq) revealed that the application of fullerenol caused the high expression of genes related to oxidoreduction to return to a normal level. Assay for transposase accessible chromatin sequencing (ATAC-seq) confirmed that fullerenol application reduced the overall levels of chromatin accessibility of numerous genes, including those related to environmental signaling, transcriptional regulation, and metabolism. CONCLUSION This study suggests that fullerenol alleviates osmotic stress on various fronts, encompassing antioxidant, transcriptional, and epigenetic levels. This advances knowledge of the working mechanism of this nanomaterial within plant cells. © 2024 Society of Chemical Industry.
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Affiliation(s)
- Kang Ning
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology of Zhejiang Province, College of Life Sciences, China Jiliang University, Hangzhou, People's Republic of China
| | - Ting Sun
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology of Zhejiang Province, College of Life Sciences, China Jiliang University, Hangzhou, People's Republic of China
| | - Zhuoyi Wang
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology of Zhejiang Province, College of Life Sciences, China Jiliang University, Hangzhou, People's Republic of China
| | - Hailan Li
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology of Zhejiang Province, College of Life Sciences, China Jiliang University, Hangzhou, People's Republic of China
| | - Pingping Fang
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology of Zhejiang Province, College of Life Sciences, China Jiliang University, Hangzhou, People's Republic of China
| | - Xiaoqi Cai
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology of Zhejiang Province, College of Life Sciences, China Jiliang University, Hangzhou, People's Republic of China
| | - Xinyang Wu
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology of Zhejiang Province, College of Life Sciences, China Jiliang University, Hangzhou, People's Republic of China
| | - Min Xu
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology of Zhejiang Province, College of Life Sciences, China Jiliang University, Hangzhou, People's Republic of China
| | - Pei Xu
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology of Zhejiang Province, College of Life Sciences, China Jiliang University, Hangzhou, People's Republic of China
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Gupta S, Aski M, Mishra GP, Yadav PS, Tripathi K, Lal SK, Jain S, Nair RM, Dikshit HK. Genetic variation for tolerance to pre-harvest sprouting in mungbean ( Vigna radiata) genotypes. PeerJ 2024; 12:e17609. [PMID: 39071133 PMCID: PMC11276771 DOI: 10.7717/peerj.17609] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Accepted: 05/30/2024] [Indexed: 07/30/2024] Open
Abstract
Pre-harvest sprouting (PHS) is one of the important abiotic stresses in mungbean which significantly reduces yield and quality of the produce. This study was conducted to evaluate the genetic variability for tolerance to pre-harvest sprouting in diverse mungbean genotypes while simultaneously deciphering the association of yield contributing traits with PHS. Eighty-three diverse mungbean genotypes (23 released varieties, 23 advanced breeding lines and 37 exotic germplasm lines) were investigated for tolerance to PHS, water imbibition capacities by pods, pod and seed physical traits. Wide variation in PHS was recorded which ranged between 17.8% to 81% (mean value 54.34%). Germplasm lines exhibited higher tolerance to PHS than the high-yielding released varieties. Correlation analysis revealed PHS to be positively associated with water imbibition capacity by pods (r = 0.21) and germinated pod % (r = 0.78). Pod length (r = -0.13) and seeds per pod (r = -0.13) were negatively influencing PHS. Positive associations between PHS and water imbibition capacity by pods, germinated pod % and 100-seed weight was further confirmed by multivariate analysis. Small-seeded genotypes having 100-seed weight <3 g exhibited higher tolerance to PHS compared to bold-seeded genotypes having 100-seed weight more than 3.5 g. Fresh seed germination among the selected PHS tolerant and susceptible genotypes ranged from 42% (M 204) to 98% (Pusa 1131). A positive association (r = 0.79) was recorded between fresh seed germination and PHS. Genotypes M 1255, M 145, M 422, M 1421 identified as potential genetic donors against PHS could be utilized in mungbean breeding programs.
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Affiliation(s)
- Soma Gupta
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi, India
| | - Muraleedhar Aski
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi, India
| | - Gyan Prakash Mishra
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi, India
- Division of Seed Science and Technology, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi, India
| | - Prachi S. Yadav
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi, India
| | - Kuldeep Tripathi
- Division of Germplasm Evaluation, ICAR-National Bureau of Plant Genetic Resources, New Delhi, Delhi, India
| | - Sandeep Kumar Lal
- Division of Seed Science and Technology, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi, India
| | - Simran Jain
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi, India
| | | | - Harsh Kumar Dikshit
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi, India
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Sun Y, Gong Y. Research advances on the hard seededness trait of soybean and the underlying regulatory mechanisms. FRONTIERS IN PLANT SCIENCE 2024; 15:1419962. [PMID: 38988633 PMCID: PMC11233808 DOI: 10.3389/fpls.2024.1419962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/19/2024] [Accepted: 06/13/2024] [Indexed: 07/12/2024]
Abstract
Soybean is one of the world's most economically significant crops and is widely utilized as an essential source of vegetable protein and edible oil. Cultivated soybean is domesticated from its annual counterpart, wild soybean, which is considered valuable germplasm for soybean breeding. However, wild soybean accessions generally produce seeds with impermeable coats, a trait known as hard seededness (HS), which is beneficial for long-term seed survival but is undesirable for the uniform water absorption and germination of seeds, thus limiting the utilization of wild soybeans in breeding. In addition, moderate HS can isolate the embryo from the surrounding environment and is thus beneficial for long-term seed storage and germplasm preservation. The HS trait is primarily associated with the structure and chemical composition of the seed coat. Moreover, its development is also influenced by various environmental conditions, such as water and temperature. Genetic analysis has revealed that HS of soybean is a complex quantitative trait controlled by multiple genes or minor quantitative trait loci (QTL), with many QTLs and several causal genes currently identified. Investigating the physiological and molecular mechanisms underlying this trait is crucial for soybean breeding, production, and food processing. For this article, the literature was reviewed and condensed to create a well-rounded picture of the current understanding of internal and external factors, QTLs, causal genes, and the regulatory mechanisms related to the HS of soybean, with the aim of providing reference for future research and utilization of this trait.
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Affiliation(s)
- Yongwang Sun
- School of Agricultural Science and Engineering, Liaocheng University, Liaocheng, China
| | - Yujie Gong
- School of Agricultural Science and Engineering, Liaocheng University, Liaocheng, China
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Fonseca de Oliveira GR, Amaral da Silva EA. Tropical peanut maturation scale for harvesting seeds with superior quality. FRONTIERS IN PLANT SCIENCE 2024; 15:1376370. [PMID: 38784060 PMCID: PMC11113016 DOI: 10.3389/fpls.2024.1376370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 04/16/2024] [Indexed: 05/25/2024]
Abstract
Determining the moment for harvesting the tropical peanut with a focus on superior seed quality is not an easy task. Particularities such as indeterminate flowering, underground fruiting and uneven maturation further increase this technical challenge. It is in this context that we aim to investigate harvest indicators based on the maturation and late maturation phases of tropical peanuts to obtain seeds with superior physiological and health quality. The plants were grown in field conditions and their development stages were carefully monitored until seed production. The water content, dry weight, germination capacity, desiccation tolerance, vigor, longevity, and seed pathogens were evaluated throughout these stages. We showed that seeds from early stages (R5 and R6) did not fully tolerate desiccation and were highly sensitive to pathogen contamination after storage (Aspergillus, Penicillium, and Bacteria). At late stages (R7, R8, and R9), the seeds had optimized vigor, longevity and bioprotection against fungi and thermal stress. The peanut maturation scale for tropical agriculture provides unique harvesting guidelines that make it possible to monitor the plants' development stages with a focus on producing superior quality seeds.
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Perucini-Avendaño M, Arzate-Vázquez I, Perea-Flores MDJ, Tapia-Maruri D, Méndez-Méndez JV, Nicolás-García M, Dávila-Ortiz G. Effect of cooking on structural changes in the common black bean ( Phaseolus vulgaris var. Jamapa). Heliyon 2024; 10:e25620. [PMID: 38380000 PMCID: PMC10877254 DOI: 10.1016/j.heliyon.2024.e25620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 01/29/2024] [Accepted: 01/31/2024] [Indexed: 02/22/2024] Open
Abstract
The cooking process is fundamental for bean consumption and to increase the bioavailability of its nutritional components. The study aimed to determine the effect of cooking on bean seed coat through morphological analyses with different microscopy techniques and image analyses. The chemical composition and physical properties of raw black bean (RBB) and cooked black bean (CBB) seeds were determined. The surface and cross-sectional samples were studied by Optical microscopy (OM), environmental scanning electron microscopy (ESEM), atomic force microscopy (AFM) and confocal laser scanning microscopy (CLSM). The composition of samples showed significant differences after the cooking process. OM images and gray level co-occurrence matrix algorithm (GLCM) analysis indicated that cuticle-deposited minerals significantly influence texture parameters. Seed coat surface ESEM images showed cluster cracking. Texture fractal dimension and lacunarity parameters were effective in quantitatively assessing cracks on CBB. AFM results showed arithmetic average roughness (Ra) (121.67 nm) and quadratic average roughness (Rq) (149.94 nm). The cross-sectional ESEM images showed a decrease in seed coat thickness. The CLSM results showed an increased availability of lipids along the different multilayer tissues in CBB. The results generated from this research work offer a valuable potential to carry out a strict control of bean seed cooking at industrial level, since the structural changes and biochemical components (cell wall, lipids and protein bodies) that occur in the different tissues of the seed are able to migrate from the inside to the outside through the cracks generated in the multilayer structure that are evidenced by the microscopic techniques used.
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Affiliation(s)
- Madeleine Perucini-Avendaño
- Departamento de Ingeniería Bioquímica, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional (IPN), Av. Wilfrido Massieu S/N, Unidad Profesional Adolfo López Mateos, Zacatenco, Delegación Gustavo A. Madero, 07738, Mexico City, Mexico
| | - Israel Arzate-Vázquez
- Centro de Nanociencias y Micro y Nanotecnologías, Instituto Politécnico Nacional (IPN), Av. Luis Enrique Erro S/N, Unidad Profesional Adolfo López Mateos, Zacatenco, Delegación Gustavo A. Madero, 07738, Mexico City, Mexico
| | - María de Jesús Perea-Flores
- Centro de Nanociencias y Micro y Nanotecnologías, Instituto Politécnico Nacional (IPN), Av. Luis Enrique Erro S/N, Unidad Profesional Adolfo López Mateos, Zacatenco, Delegación Gustavo A. Madero, 07738, Mexico City, Mexico
| | - Daniel Tapia-Maruri
- Centro de Desarrollo de Productos Bióticos-Instituto Politécnico Nacional, Carretera Yautepec-Jojutla Km. 6, Calle CEPROBI No. 8, Col. San Isidro, Yautepec, C.P. 62731, Morelos, Mexico
| | - Juan Vicente Méndez-Méndez
- Centro de Nanociencias y Micro y Nanotecnologías, Instituto Politécnico Nacional (IPN), Av. Luis Enrique Erro S/N, Unidad Profesional Adolfo López Mateos, Zacatenco, Delegación Gustavo A. Madero, 07738, Mexico City, Mexico
| | - Mayra Nicolás-García
- Departamento de Ingeniería Bioquímica, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional (IPN), Av. Wilfrido Massieu S/N, Unidad Profesional Adolfo López Mateos, Zacatenco, Delegación Gustavo A. Madero, 07738, Mexico City, Mexico
- Tecnológico Nacional de México/ITS de Teziutlán, Ingeniería en Industrias Alimentarias, Fracción I y II, Aire Libre S/N, 73960, Teziutlán, Puebla, Mexico
| | - Gloria Dávila-Ortiz
- Departamento de Ingeniería Bioquímica, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional (IPN), Av. Wilfrido Massieu S/N, Unidad Profesional Adolfo López Mateos, Zacatenco, Delegación Gustavo A. Madero, 07738, Mexico City, Mexico
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7
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Williams OR, Vander Schoor JK, Butler JB, Hecht VFG, Weller JL. Physical seed dormancy in pea is genetically separable from seed coat thickness and roughness. FRONTIERS IN PLANT SCIENCE 2024; 15:1359226. [PMID: 38476691 PMCID: PMC10927720 DOI: 10.3389/fpls.2024.1359226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Accepted: 02/09/2024] [Indexed: 03/14/2024]
Abstract
Introduction The seeds of wild pea (Pisum) exhibit marked physical dormancy due to impermeability of the seed coat to water, and the loss of this dormancy is thought to have been critical for domestication. Wild pea seed coats are also notably thick and rough, traits that have also reduced during domestication and are anecdotally linked to increased permeability. However, how these traits specifically interact with permeability is unclear. Methods To investigate this, we examined the genetic control of differences in seed coat characteristics between wild P. sativum ssp. humile and a non-dormant domesticated P. s. sativum accession in a recombinant inbred population. QTL effects were confirmed and their locations refined in segregating F4/5 populations. Results In this population we found a moderate correlation between testa thickness and permeability, and identified loci that affect them independently, suggesting no close functional association. However, the major loci affecting both testa thickness and permeability collocated closely with Mendel's pigmentation locus A, suggesting flavonoid compounds under its control might contribute significantly to both traits. We also show that seed coat roughness is oligogenic in this population, with the major locus independent of both testa thickness and permeability, suggesting selection for smooth seed was unlikely to be due to effects on either of these traits. Discussion Results indicate loss of seed coat dormancy during domestication was not primarily driven by reduced testa thickness or smooth seededness. The close association between major permeability and thickness QTL and Mendel's 'A' warrant further study, particularly regarding the role of flavonoids.
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Affiliation(s)
- Owen R. Williams
- School of Natural Sciences, University of Tasmania, Hobart, TAS, Australia
| | - Jacqueline K. Vander Schoor
- School of Natural Sciences, University of Tasmania, Hobart, TAS, Australia
- ARC Centre of Excellence for Plant Success in Nature and Agriculture, University of Tasmania, Hobart, TAS, Australia
| | - Jakob B. Butler
- School of Natural Sciences, University of Tasmania, Hobart, TAS, Australia
- ARC Centre of Excellence for Plant Success in Nature and Agriculture, University of Tasmania, Hobart, TAS, Australia
| | | | - James L. Weller
- School of Natural Sciences, University of Tasmania, Hobart, TAS, Australia
- ARC Centre of Excellence for Plant Success in Nature and Agriculture, University of Tasmania, Hobart, TAS, Australia
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8
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Buba T, Ezra AG, Bako SP, Sabo MU. Seed germination dynamics of some woody legumes: implication for restoration of arid zones ecosystems. BIOTECHNOLOGIA 2023; 104:381-402. [PMID: 38213475 PMCID: PMC10777726 DOI: 10.5114/bta.2023.132774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 04/19/2023] [Accepted: 08/17/2023] [Indexed: 01/13/2024] Open
Abstract
The seed germination dynamics of Acacia nilotica, Bauhinia rufescens, Faidherbia albida, and Piliostigma reticulatum were investigated over 28 days. Seeds were pretreated with concentrated sulfuric acid. Determined germination parameters included germination energy, germination period, germination capacity, germination inertia, and viability loss. Seeds exposed to sulfuric acid for extended periods (30, 40, 50, and 60 min) exhibited a higher germination rate (α = 0.05). For A. nilotica seeds, the 50 min acid treatment resulted in the highest germination energy of 85.5% and germination capacity of 89.5% (P = 0.001); conversely, the 60-min treatment yielded the highest germination energy and capacity, both 96.5% (P = 0.079), for P. reticulatum. In the case of B. rufescens, the 30-min treatment led to the highest germination energy of 93% and germination capacity of 88% (P = 0.001). For F. albida, all acid treatments resulted in 100% for both germination energy and germination capacity (P = 0.621). Viability losses for A. nilotica and P. reticulatum were higher (32 and 30%, respectively) than those for B. rufescens and F. albida, which were 19.5 and 6%, respectively (P = 0.000). Generally, higher germination energy resulted in lower viability loss, dependent on the species. Analyses of germination inertia and viability loss suggest that seeds of A. nilotica and P. reticulatum possess a greater ability to survive in arid land climates than those of B. rufescens and F. albida. However, due to the advantage of lower viability loss, B. rufescens and F. albida should be preferred for the natural restoration of arid land ecosystems where seed availability is a major concern.
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Affiliation(s)
- Toma Buba
- Department of Biological Sciences, Faculty of Science, Abubakar Tafawa Balewa University, Bauchi, Nigeria
| | - Abalis Gaya Ezra
- Department of Biological Sciences, Faculty of Science, Abubakar Tafawa Balewa University, Bauchi, Nigeria
| | - Sunday Paul Bako
- Department of Biological Science, Ahmadu Bello University, Zaria, Kaduna State, Nigeria
| | - Mohammad Umar Sabo
- Department of Crop Production, Faculty Agriculture, Abubakar Tafawa Balewa University, Bauchi, Nigeria
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Tilhou N, Kucek LK, Carr B, Marion A, Douglas J, Englert J, Ali S, Raasch J, Bhamidimarri S, Mirsky SB, Monteros MJ, Krogman S, Hayes R, Azevedo M, Riday H. Genome-wide association mapping in hairy vetch ( Vicia villosa) discovers a large effect locus controlling seed dormancy. FRONTIERS IN PLANT SCIENCE 2023; 14:1282187. [PMID: 37941659 PMCID: PMC10628312 DOI: 10.3389/fpls.2023.1282187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 10/06/2023] [Indexed: 11/10/2023]
Abstract
Hairy vetch (Vicia villosa Roth), a winter-hardy annual legume, is a promising cover crop. To fully leverage its potential, seed production and field performance of V. villosa must be improved to facilitate producer adoption. Two classic domestication traits, seed dormancy (hard seed) and dehiscence (pod shatter), are selection targets in an ongoing breeding program. This study reports a genome-wide association study of 1,019 V. villosa individuals evaluated at two sites (Knox City, Texas and Corvallis, Oregon) for the proportion of dormant seed, visual pod dehiscence scores, and two dehiscence surrogate measures (force to dehiscence and pod spiraling score). Trait performance varied between sites, but reliability (related to heritability) across sites was strong (dormant seed proportion: 0.68; dehiscence score: 0.61; spiraling score: 0.42; force to dehiscence: 0.41). A major locus controlling seed dormancy was found (q-value: 1.29 × 10-5; chromosome 1: position: 63611165), which can be used by breeding programs to rapidly reduce dormancy in breeding populations. No significant dehiscence score QTL was found, primarily due to the high dehiscence rates in Corvallis, Oregon. Since Oregon is a potentially major V. villosa seed production region, further dehiscence resistance screening is necessary.
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Affiliation(s)
- Neal Tilhou
- US Dairy Forage Research Center, United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Madison, WI, United States
| | - Lisa Kissing Kucek
- US Dairy Forage Research Center, United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Madison, WI, United States
| | - Brandon Carr
- James E. “Bud” Smith Plant Materials Center, United States Department of Agriculture-Natural Resources Conservation Service (USDA-NRCS), Knox City, TX, United States
| | - Annie Marion
- Corvallis Plant Materials Center, USDA-NRCS, Corvallis, OR, United States
| | - Joel Douglas
- Central National Technology Support Center, USDA-NRCS, Fort Worth, TX, United States
| | - John Englert
- National Plant Materials Program, USDA-NRCS, Washington, DC, United States
| | - Shahjahan Ali
- US Dairy Forage Research Center, United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Madison, WI, United States
| | - John Raasch
- US Dairy Forage Research Center, United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Madison, WI, United States
| | | | - Steven Brian Mirsky
- Sustainable Agricultural Systems Laboratory, United States Department of Agriculture-Natural Resources Conservation Service (USDA-ARS), Beltsville, MD, United States
| | | | - Sarah Krogman
- School of Medicine in Kansas, University of Kansas Medical Center, Wichita, KS, United States
| | - Ryan Hayes
- Forage Seed and Cereal Research Unit, USDA-ARS, Corvaillis, OR, United States
| | - Mark Azevedo
- Forage Seed and Cereal Research Unit, USDA-ARS, Corvaillis, OR, United States
| | - Heathcliffe Riday
- US Dairy Forage Research Center, United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Madison, WI, United States
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10
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Balarynová J, Klčová B, Tarkowská D, Turečková V, Trněný O, Špundová M, Ochatt S, Smýkal P. Domestication has altered the ABA and gibberellin profiles in developing pea seeds. PLANTA 2023; 258:25. [PMID: 37351659 PMCID: PMC10290032 DOI: 10.1007/s00425-023-04184-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 06/12/2023] [Indexed: 06/24/2023]
Abstract
MAIN CONCLUSION We showed that wild pea seeds contained a more diverse combination of bioactive GAs and had higher ABA content than domesticated peas. Although the role of abscisic acid (ABA) and gibberellins (GAs) interplay has been extensively studied in Arabidopsis and cereals models, comparatively little is known about the effect of domestication on the level of phytohormones in legume seeds. In legumes, as in other crops, seed dormancy has been largely or entirely removed during domestication. In this study, we have measured the endogenous levels of ABA and GAs comparatively between wild and domesticated pea seeds during their development. We have shown that wild seeds contained more ABA than domesticated ones, which could be important for preparing the seeds for the period of dormancy. ABA was catabolised particularly by an 8´-hydroxylation pathway, and dihydrophaseic acid was the main catabolite in seed coats as well as embryos. Besides, the seed coats of wild and pigmented cultivated genotypes were characterised by a broader spectrum of bioactive GAs compared to non-pigmented domesticated seeds. GAs in both seed coat and embryo were synthesized mainly by a 13-hydroxylation pathway, with GA29 being the most abundant in the seed coat and GA20 in the embryos. Measuring seed water content and water loss indicated domesticated pea seeds´ desiccation was slower than that of wild pea seeds. Altogether, we showed that pea domestication led to a change in bioactive GA composition and a lower ABA content during seed development.
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Affiliation(s)
- Jana Balarynová
- Department of Botany, Faculty of Science, Palacky University, 783 71, Olomouc, Czech Republic
| | - Barbora Klčová
- Department of Botany, Faculty of Science, Palacky University, 783 71, Olomouc, Czech Republic
| | - Danuše Tarkowská
- Laboratory of Growth Regulators, Palacky University and Institute of Experimental Botany, Czech Academy of Sciences, 783 71, Olomouc, Czech Republic
| | - Veronika Turečková
- Laboratory of Growth Regulators, Palacky University and Institute of Experimental Botany, Czech Academy of Sciences, 783 71, Olomouc, Czech Republic
| | - Oldřich Trněný
- Agriculture Research Ltd., 664 41, Troubsko, Czech Republic
| | - Martina Špundová
- Department of Biophysics, Faculty of Science, Palacky University, 783 71, Olomouc, Czech Republic
| | - Sergio Ochatt
- Agroécologie, InstitutAgro Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France
| | - Petr Smýkal
- Department of Botany, Faculty of Science, Palacky University, 783 71, Olomouc, Czech Republic.
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11
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Ramírez-Olvera SM, Sandoval-Villa M. Uses, Botanical Characteristics, and Phenological Development of Slender Nightshade ( Solanum nigrescens Mart. and Gal.). PLANTS (BASEL, SWITZERLAND) 2023; 12:1645. [PMID: 37111868 PMCID: PMC10145186 DOI: 10.3390/plants12081645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Revised: 04/08/2023] [Accepted: 04/10/2023] [Indexed: 06/19/2023]
Abstract
Slender nightshade (Solanum nigrescens Mart. and Gal.) is a perennial, herbaceous plant from the Solanaceae family, which is distributed in various environments. The aim of this study was to review the scientific literature and to establish slender nightshade plants under greenhouse conditions in order to record their phenological development. The specialized literature regarding the distribution, botanical characteristics, and uses of such species was analyzed. The phenological development was recorded based on the BBCH (Biologische Bundesanstalt, Bundessortenamt, Chemische Industrie) guide. Slender nightshade seeds were germinated under greenhouse conditions, then transferred to red porous volcano gravel locally known as tezontle in black polyethylene bags and watered with a Steiner nutrient solution. Changes in phenology were monitored and recorded from germination to the ripening of fruit and seeds. Slender nightshade has a wide distribution in Mexico and is used for medicinal and gastronomical purposes, as well as to control pathogens. The phenological development of slender nightshade has seven stages from germination to the ripening of fruit and seeds. Slender nightshade is a poorly studied plant with potential for human consumption. The phenological recording provides a tool for its management and further research as a crop.
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Affiliation(s)
- Sara Monzerrat Ramírez-Olvera
- Department of Soil Science, College of Postgraduate in Agricultural Sciences, Campus Montecillo, Montecillo 56264, Mexico;
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12
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Takahashi Y, Nasu H, Nakayama S, Tomooka N. Domestication of azuki bean and soybean in Japan: From the insight of archeological and molecular evidence. BREEDING SCIENCE 2023; 73:117-131. [PMID: 37404345 PMCID: PMC10316305 DOI: 10.1270/jsbbs.22074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Accepted: 01/05/2023] [Indexed: 07/06/2023]
Abstract
Domestication of azuki bean and soybean has enabled them to acquire non-dormant seeds, non-shattering pods, and larger seed size. Seed remains of the Jomon period recently discovered at archeological sites in the Central Highlands of Japan (6,000-4,000 BP) suggest that the use of azuki bean and soybean and their increase in seed size began earlier in Japan than in China and Korea; molecular phylogenetic studies indicate that azuki bean and soybean originated in Japan. Recent identification of domestication genes indicate that the domestication traits of azuki bean and soybean were established by different mechanisms. Analyses of domestication related genes using DNA extracted from the seed remains would reveal further details about their domestication processes.
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Affiliation(s)
- Yu Takahashi
- Research Center of Genetic Resources, National Agriculture and Food Research Organization, Tsukuba, Ibaraki 305-8602, Japan
| | - Hiroo Nasu
- Faculty of Biosphere-Geosphere Science, Okayama University of Science, Okayama 700-0005, Japan
| | - Seiji Nakayama
- Research Institute of Cultural Properties, Teikyo University, Fuefuki, Yamanashi 406-0032, Japan
| | - Norihiko Tomooka
- Research Center of Genetic Resources, National Agriculture and Food Research Organization, Tsukuba, Ibaraki 305-8602, Japan
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13
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Sukhorukov AP, Nilova MV, Kushunina M, Mazei Y, Klak C. Evolution of seed characters and of dispersal modes in Aizoaceae. FRONTIERS IN PLANT SCIENCE 2023; 14:1140069. [PMID: 37035044 PMCID: PMC10073613 DOI: 10.3389/fpls.2023.1140069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/08/2023] [Accepted: 02/24/2023] [Indexed: 06/19/2023]
Abstract
The family Aizoaceae includes ~1880 species and is one of the more diverse groups within Caryophyllales, particularly in arid areas in the western part of southern Africa. Most species are dwarf succulent-leaf shrubs. In response to the harsh climatic conditions prevalent where they occur, many representatives have evolved special reproductive adaptations. These include hygrochastic capsules (mostly found in Mesembryanthemoideae and Ruschioideae), burr-like indehiscent and one-seeded, winged diaspores, and fast germination of seeds after rain. We focused on anatomical features, evolutionary trends, and the ecological significance of various morpho-anatomical structures found in the seeds. The seeds of 132 species from 61 genera were studied, and 18 diagnostic characters were discovered. All studied characters were compared with those of other families from core Caryophyllales. The seed notch and embryo shape were added to the list of characteristics distinguishing major clades within the family. In addition, the presence of longitudinal ridges and a keel on the seed are additional characters of Aizooideae and combined Ruschioideae-Apatesieae, respectively. Puzzle-like borders of testa cells are a common trait in Ruschioideae and Mesembryanthemoideae. Most taxa in Aizoaceae have a thin seed coat, which is the ancestral state within the family. This may facilitate fast germination. We observed several shifts to a medium-thick or thick seed coat in members of Ruschioideae and Acrosanthoideae. These inhabit fire-prone environments (in vegetation types known as fynbos and renosterveld), where the thickened seed coat may protect against damage by fire. Multi-seeded fruits are the ancestral state within Aizoaceae, with several shifts to one-(two-)seeded xerochastic fruits. The latter are dispersed via autochory, zoochory, or anemochory. This trait has evolved mainly in less succulent subfamilies Acrosanthoideae, Aizooideae, and Sesuvioideae. In highly succulent subfamilies Ruschioideae and Mesembryanthemoideae, fruits are almost exclusively multi-seeded and hygrochastic with ombrohydrochoric dispersal. A reduction in the number of seeds within a dispersal unit is rare. Within Apatesieae and Ruschieae, there are also a few unusual genera whose fruits fall apart into one- to two-seeded mericarps (that are mainly dispersed by wind).
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Affiliation(s)
- Alexander P. Sukhorukov
- Department of Higher Plants, Biological Faculty, M.V. Lomonosov Moscow State University, Moscow, Russia
- Laboratory Herbarium (TK), Tomsk State University, Tomsk, Russia
| | - Maya V. Nilova
- Department of Higher Plants, Biological Faculty, M.V. Lomonosov Moscow State University, Moscow, Russia
| | - Maria Kushunina
- Laboratory Herbarium (TK), Tomsk State University, Tomsk, Russia
- Department of Plant Physiology, Biological Faculty, M.V. Lomonosov Moscow State University, Moscow, Russia
| | - Yuri Mazei
- Department of General Ecology and Hydrobiology, Biological Faculty, M.V. Lomonosov Moscow State University, Moscow, Russia
| | - Cornelia Klak
- Bolus Herbarium, Department of Biological Sciences, University of Cape Town, Cape Town, South Africa
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14
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Acosta Y, Escobar-Gutiérrez A, Ahmed LQ, Cejas I, Martínez-Montero ME, Sánchez J, Hajari E, Höfer M, Lorenzo JC, Fontes D. Morpho-anatomical evaluation of Teramnus labialis seeds: strategies to overcome physical dormancy. Biologia (Bratisl) 2023. [DOI: 10.1007/s11756-023-01341-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
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15
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Takahashi Y, Sakai H, Ariga H, Teramoto S, Shimada TL, Eun H, Muto C, Naito K, Tomooka N. Domesticating Vigna stipulacea: Chromosome-Level genome assembly reveals VsPSAT1 as a candidate gene decreasing hard-seededness. FRONTIERS IN PLANT SCIENCE 2023; 14:1119625. [PMID: 37139108 PMCID: PMC10149957 DOI: 10.3389/fpls.2023.1119625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Accepted: 03/27/2023] [Indexed: 05/05/2023]
Abstract
To increase food production under the challenges presented by global climate change, the concept of de novo domestication-utilizing stress-tolerant wild species as new crops-has recently gained considerable attention. We had previously identified mutants with desired domestication traits in a mutagenized population of the legume Vigna stipulacea Kuntze (minni payaru) as a pilot for de novo domestication. Given that there are multiple stress-tolerant wild legume species, it is important to establish efficient domestication processes using reverse genetics and identify the genes responsible for domestication traits. In this study, we identified VsPSAT1 as the candidate gene responsible for decreased hard-seededness, using a Vigna stipulacea isi2 mutant that takes up water from the lens groove. Scanning electron microscopy and computed tomography revealed that the isi2 mutant has lesser honeycomb-like wax sealing the lens groove than the wild-type, and takes up water from the lens groove. We also identified the pleiotropic effects of the isi2 mutant: accelerating leaf senescence, increasing seed size, and decreasing numbers of seeds per pod. While doing so, we produced a V. stipulacea whole-genome assembly of 441 Mbp in 11 chromosomes and 30,963 annotated protein-coding sequences. This study highlights the importance of wild legumes, especially those of the genus Vigna with pre-existing tolerance to biotic and abiotic stresses, for global food security during climate change.
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Affiliation(s)
- Yu Takahashi
- Research Center of Genetic Resources, National Agriculture and Food Research Organization, Tsukuba, Japan
- *Correspondence: Yu Takahashi,
| | - Hiroaki Sakai
- Research Center of Advanced Analysis, National Agriculture and Food Research Organization, Tsukuba, Japan
| | - Hirotaka Ariga
- Research Center of Genetic Resources, National Agriculture and Food Research Organization, Tsukuba, Japan
| | - Shota Teramoto
- Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba, Japan
| | - Takashi L. Shimada
- Graduate School of Horticulture, Chiba University, Matsudo, Japan
- Plant Molecular Science Center, Chiba University, Inage-ku, Japan
| | - Heesoo Eun
- Research Center of Advanced Analysis, National Agriculture and Food Research Organization, Tsukuba, Japan
| | - Chiaki Muto
- Research Center of Genetic Resources, National Agriculture and Food Research Organization, Tsukuba, Japan
| | - Ken Naito
- Research Center of Genetic Resources, National Agriculture and Food Research Organization, Tsukuba, Japan
| | - Norihiko Tomooka
- Research Center of Genetic Resources, National Agriculture and Food Research Organization, Tsukuba, Japan
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16
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Bohra A, Tiwari A, Kaur P, Ganie SA, Raza A, Roorkiwal M, Mir RR, Fernie AR, Smýkal P, Varshney RK. The Key to the Future Lies in the Past: Insights from Grain Legume Domestication and Improvement Should Inform Future Breeding Strategies. PLANT & CELL PHYSIOLOGY 2022; 63:1554-1572. [PMID: 35713290 PMCID: PMC9680861 DOI: 10.1093/pcp/pcac086] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 06/09/2022] [Accepted: 06/15/2022] [Indexed: 05/11/2023]
Abstract
Crop domestication is a co-evolutionary process that has rendered plants and animals significantly dependent on human interventions for survival and propagation. Grain legumes have played an important role in the development of Neolithic agriculture some 12,000 years ago. Despite being early companions of cereals in the origin and evolution of agriculture, the understanding of grain legume domestication has lagged behind that of cereals. Adapting plants for human use has resulted in distinct morpho-physiological changes between the wild ancestors and domesticates, and this distinction has been the focus of several studies aimed at understanding the domestication process and the genetic diversity bottlenecks created. Growing evidence from research on archeological remains, combined with genetic analysis and the geographical distribution of wild forms, has improved the resolution of the process of domestication, diversification and crop improvement. In this review, we summarize the significance of legume wild relatives as reservoirs of novel genetic variation for crop breeding programs. We describe key legume features, which evolved in response to anthropogenic activities. Here, we highlight how whole genome sequencing and incorporation of omics-level data have expanded our capacity to monitor the genetic changes accompanying these processes. Finally, we present our perspective on alternative routes centered on de novo domestication and re-domestication to impart significant agronomic advances of novel crops over existing commodities. A finely resolved domestication history of grain legumes will uncover future breeding targets to develop modern cultivars enriched with alleles that improve yield, quality and stress tolerance.
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Affiliation(s)
- Abhishek Bohra
- State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Food Futures Institute, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - Abha Tiwari
- Crop Improvement Division, ICAR-Indian Institute of Pulses Research (ICAR-IIPR), Kalyanpur, Kanpur 208024, India
| | - Parwinder Kaur
- UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Hwy, Crawley, WA 6009, Australia
| | - Showkat Ahmad Ganie
- Department of Biotechnology, Visva-Bharati, Santiniketan, Santiniketan Road, Bolpur 731235, India
| | - Ali Raza
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Oil Crops Research Institute, Fujian Agriculture and Forestry University (FAFU), Fuzhou 350002, China
| | - Manish Roorkiwal
- Khalifa Center for Genetic Engineering and Biotechnology (KCGEB), UAE University, Sheik Khalifa Bin Zayed Street, Al Ain, Abu Dhabi 15551, UAE
| | - Reyazul Rouf Mir
- Division of Genetics & Plant Breeding, Faculty of Agriculture, SKUAST, Shalimar, Srinagar 190025, India
| | - Alisdair R Fernie
- Department of Molecular Physiology, Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm 14476, Germany
| | - Petr Smýkal
- Department of Botany, Faculty of Sciences, Palacky University, Křížkovského 511/8, Olomouc 78371, Czech Republic
| | - Rajeev K Varshney
- State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Food Futures Institute, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
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17
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Jaganathan GK. Unravelling the paradox in physically dormant species: elucidating the onset of dormancy after dispersal and dormancy-cycling. ANNALS OF BOTANY 2022; 130:121-129. [PMID: 35737935 PMCID: PMC9445591 DOI: 10.1093/aob/mcac084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2022] [Accepted: 06/21/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND For species that produce seeds with a water-impermeable coat, i.e. physical dormancy (PY), it has been widely recognized that (1) seeds shed at a permeable state cannot become impermeable after dispersal; and (2) dormancy-cycling, i.e. a permeable ↔ impermeable transition, does not occur. Given a tight relationship between moisture content and onset of seed-coat impermeability, seeds maturing at low relative humidity (RH) and occurring in a high-temperature environment are inferred to produce impermeable coats, and ex situ drying of permeable seeds can lead to the onset of impermeability. SCOPE AND CONCLUSION It is proposed here that permeable seeds dispersed at low RH and in high-temperature soils might become impermeable due to continuous drying. Similarly, seeds with shallow PY dormancy (with higher moisture content immediately after becoming impermeable) can cycle back to a permeable state or absolute PY (complete dry state) when RH increases or decreases, respectively. A conceptual model is developed to propose that seeds from several genera of 19 angiosperm families at the time of natural dispersal can be (1) impermeable (dormant), i.e. primary dormancy; (2) impermeable (dormant) and become permeable (non-dormant) and then enter a dormant state in the soil, often referred to as secondary dormancy; (3) permeable (non-dormant) and become impermeable (dormant) in the soil, i.e. enforced dormancy; or (4) dormant or non-dormant, but cycle between permeable and non-permeable states depending on the soil conditions, i.e. dormancy-cycling, which is different from sensitivity-cycling occurring during dormancy break. It is suggested that this phenomenon could influence the dormancy-breaking pattern, but detailed studies of this are lacking.
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18
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Ambika, Aski MS, Gayacharan, Hamwieh A, Talukdar A, Kumar Gupta S, Sharma BB, Joshi R, Upadhyaya HD, Singh K, Kumar R. Unraveling Origin, History, Genetics, and Strategies for Accelerated Domestication and Diversification of Food Legumes. Front Genet 2022; 13:932430. [PMID: 35979429 PMCID: PMC9376740 DOI: 10.3389/fgene.2022.932430] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Accepted: 06/15/2022] [Indexed: 11/24/2022] Open
Abstract
Domestication is a dynamic and ongoing process of transforming wild species into cultivated species by selecting desirable agricultural plant features to meet human needs such as taste, yield, storage, and cultivation practices. Human plant domestication began in the Fertile Crescent around 12,000 years ago and spread throughout the world, including China, Mesoamerica, the Andes and Near Oceania, Sub-Saharan Africa, and eastern North America. Indus valley civilizations have played a great role in the domestication of grain legumes. Crops, such as pigeon pea, black gram, green gram, lablab bean, moth bean, and horse gram, originated in the Indian subcontinent, and Neolithic archaeological records indicate that these crops were first domesticated by early civilizations in the region. The domestication and evolution of wild ancestors into today’s elite cultivars are important contributors to global food supply and agricultural crop improvement. In addition, food legumes contribute to food security by protecting human health and minimize climate change impacts. During the domestication process, legume crop species have undergone a severe genetic diversity loss, and only a very narrow range of variability is retained in the cultivars. Further reduction in genetic diversity occurred during seed dispersal and movement across the continents. In general, only a few traits, such as shattering resistance, seed dormancy loss, stem growth behavior, flowering–maturity period, and yield traits, have prominence in the domestication process across the species. Thus, identification and knowledge of domestication responsive loci were often useful in accelerating new species’ domestication. The genes and metabolic pathways responsible for the significant alterations that occurred as an outcome of domestication might aid in the quick domestication of novel crops. Further, recent advances in “omics” sciences, gene-editing technologies, and functional analysis will accelerate the domestication and crop improvement of new crop species without losing much genetic diversity. In this review, we have discussed about the origin, center of diversity, and seed movement of major food legumes, which will be useful in the exploration and utilization of genetic diversity in crop improvement. Further, we have discussed about the major genes/QTLs associated with the domestication syndrome in pulse crops and the future strategies to improve the food legume crops.
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Renzi JP, Coyne CJ, Berger J, von Wettberg E, Nelson M, Ureta S, Hernández F, Smýkal P, Brus J. How Could the Use of Crop Wild Relatives in Breeding Increase the Adaptation of Crops to Marginal Environments? FRONTIERS IN PLANT SCIENCE 2022; 13:886162. [PMID: 35783966 PMCID: PMC9243378 DOI: 10.3389/fpls.2022.886162] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 05/11/2022] [Indexed: 06/01/2023]
Abstract
Alongside the use of fertilizer and chemical control of weeds, pests, and diseases modern breeding has been very successful in generating cultivars that have increased agricultural production several fold in favorable environments. These typically homogeneous cultivars (either homozygous inbreds or hybrids derived from inbred parents) are bred under optimal field conditions and perform well when there is sufficient water and nutrients. However, such optimal conditions are rare globally; indeed, a large proportion of arable land could be considered marginal for agricultural production. Marginal agricultural land typically has poor fertility and/or shallow soil depth, is subject to soil erosion, and often occurs in semi-arid or saline environments. Moreover, these marginal environments are expected to expand with ongoing climate change and progressive degradation of soil and water resources globally. Crop wild relatives (CWRs), most often used in breeding as sources of biotic resistance, often also possess traits adapting them to marginal environments. Wild progenitors have been selected over the course of their evolutionary history to maintain their fitness under a diverse range of stresses. Conversely, modern breeding for broad adaptation has reduced genetic diversity and increased genetic vulnerability to biotic and abiotic challenges. There is potential to exploit genetic heterogeneity, as opposed to genetic uniformity, in breeding for the utilization of marginal lands. This review discusses the adaptive traits that could improve the performance of cultivars in marginal environments and breeding strategies to deploy them.
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Affiliation(s)
- Juan Pablo Renzi
- Instituto Nacional de Tecnología Agropecuaria, Hilario Ascasubi, Argentina
- CERZOS, Departamento de Agronomía, Universidad Nacional del Sur (CONICET), Bahía Blanca, Argentina
| | | | - Jens Berger
- Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Wembley, WA, Australia
| | - Eric von Wettberg
- Department of Plant and Soil Science, Gund Institute for Environment, University of Vermont, Burlington, VT, United States
- Department of Applied Mathematics, Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, Russia
| | - Matthew Nelson
- Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Wembley, WA, Australia
- The UWA Institute of Agriculture, University of Western Australia, Crawley, WA, Australia
| | - Soledad Ureta
- CERZOS, Departamento de Agronomía, Universidad Nacional del Sur (CONICET), Bahía Blanca, Argentina
| | - Fernando Hernández
- CERZOS, Departamento de Agronomía, Universidad Nacional del Sur (CONICET), Bahía Blanca, Argentina
| | - Petr Smýkal
- Department of Botany, Faculty of Science, Palacký University, Olomouc, Czechia
| | - Jan Brus
- Department of Geoinformatics, Faculty of Sciences, Palacký University, Olomouc, Czechia
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20
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Manda L, Idohou R, Assogbadjo AE, Agbangla C. Climate Change Reveals Contractions and Expansions in the Distribution of Suitable Habitats for the Neglected Crop Wild Relatives of the Genus Vigna (Savi) in Benin. FRONTIERS IN CONSERVATION SCIENCE 2022. [DOI: 10.3389/fcosc.2022.870041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Sustainable conservation of crop wild relatives is one of the pathways to securing global food security amid climate change threats to biodiversity. However, their conservation is partly limited by spatio-temporal distribution knowledge gaps mostly because they are not morphologically charismatic species to attract conservation attention. Therefore, to contribute to the conservation planning of crop wild relatives, this study assessed the present-day distribution and predicted the potential effect of climate change on the distribution of 15 Vigna crop wild relative taxa in Benin under two future climate change scenarios (RCP 4.5 and RCP 8.5) at the 2055-time horizon. MaxEnt model, species occurrence records, and a combination of climate- and soil-related variables were used. The model performed well (AUC, mean = 0.957; TSS, mean = 0.774). The model showed that (i) precipitation of the driest quarter and isothermality were the dominant environmental variables influencing the distribution of the 15 wild Vigna species in Benin; (ii) about half of the total land area of Benin was potentially a suitable habitat of the studied species under the present climate; (iii) nearly one-third of the species may shift their potentially suitable habitat ranges northwards and about half of the species may lose their suitable habitats by 5 to 40% by 2055 due to climate change; and (iv) the existing protected area network in Benin was ineffective in conserving wild Vigna under the current or future climatic conditions, as it covered only about 10% of the total potentially suitable habitat of the studied species. The study concludes that climate change will have both negative and positive effects on the habitat suitability distribution of Vigna crop wild relatives in Benin such that the use of the existing protected areas alone may not be the only best option to conserve the wild Vigna diversity. Integrating multiple in situ and ex situ conservation approaches taking into account “other effective area-based conservation measures” is recommended. This study provides a crucial step towards the development of sustainable conservation strategies for Vigna crop wild relatives in Benin and West Africa.
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21
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Charles LS, Maron JL, Larios L. Species provenance and traits mediate establishment and performance in an invaded grassland. Funct Ecol 2022. [DOI: 10.1111/1365-2435.14044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Lachlan S. Charles
- Department of Botany and Plant Sciences University of California Riverside CA USA
| | - John L. Maron
- Division of Biological Sciences University of Montana Missoula MT USA
| | - Loralee Larios
- Department of Botany and Plant Sciences University of California Riverside CA USA
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22
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Shelar A, Singh AV, Dietrich P, Maharjan RS, Thissen A, Didwal PN, Shinde M, Laux P, Luch A, Mathe V, Jahnke T, Chaskar M, Patil R. Emerging cold plasma treatment and machine learning prospects for seed priming: a step towards sustainable food production. RSC Adv 2022; 12:10467-10488. [PMID: 35425017 PMCID: PMC8982346 DOI: 10.1039/d2ra00809b] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Accepted: 03/27/2022] [Indexed: 12/17/2022] Open
Abstract
Seeds are vulnerable to physical and biological stresses during the germination process. Seed priming strategies can alleviate such stresses. Seed priming is a technique of treating and drying seeds prior to germination in order to accelerate the metabolic process of germination. Multiple benefits are offered by seed priming techniques, such as reducing fertilizer use, accelerating seed germination, and inducing systemic resistance in plants, which are both cost-effective and eco-friendly. For seed priming, cold plasma (CP)-mediated priming could be an innovative alternative to synthetic chemical treatments. CP priming is an eco-friendly, safe and economical, yet relatively less explored technique towards the development of seed priming. In this review, we discussed in detail the application of CP technology for seed priming to enhance germination, the quality of seeds, and the production of crops in a sustainable manner. Additionally, the combination treatment of CP with nanoparticle (NP) priming is also discussed. The large numbers of parameters need to be monitored and optimized during CP treatment to achieve the desired priming results. Here, we discussed a new perspective of machine learning for modeling plasma treatment parameters in agriculture for the development of synergistic protocols for different types of seed priming.
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Affiliation(s)
- Amruta Shelar
- Department of Technology, Savitribai Phule Pune University Pune 411007 India
| | - Ajay Vikram Singh
- Department of Chemical and Product Safety, German Federal Institute for Risk Assessment (BfR) Max-Dohrn-Strasse 8-10 10589 Berlin Germany
| | - Paul Dietrich
- SPECS Surface Nano Analysis GmbH Voltastrasse 5 13355 Berlin Germany
| | - Romi Singh Maharjan
- Department of Chemical and Product Safety, German Federal Institute for Risk Assessment (BfR) Max-Dohrn-Strasse 8-10 10589 Berlin Germany
| | - Andreas Thissen
- SPECS Surface Nano Analysis GmbH Voltastrasse 5 13355 Berlin Germany
| | - Pravin N Didwal
- Department of Materials, University of Oxford Parks Road Oxford OX1 3PH UK
| | - Manish Shinde
- Centre for Materials for Electronics Technology (C-MET) Panchawati Pune 411008 India
| | - Peter Laux
- Department of Chemical and Product Safety, German Federal Institute for Risk Assessment (BfR) Max-Dohrn-Strasse 8-10 10589 Berlin Germany
| | - Andreas Luch
- Department of Chemical and Product Safety, German Federal Institute for Risk Assessment (BfR) Max-Dohrn-Strasse 8-10 10589 Berlin Germany
| | - Vikas Mathe
- Department of Physics, Savitribai Phule Pune University Pune 411007 India
| | - Timotheus Jahnke
- Max Planck Institute for Medical Research 61920 Heidelberg Germany
| | - Manohar Chaskar
- Faculty of Science and Technology, Savitribai Phule Pune University Pune 411007 India
| | - Rajendra Patil
- Department of Biotechnology, Savitribai Phule Pune University Pune 411007 India
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23
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Chen JZ, Huang XL, Xiao XF, Liu JM, Liao XF, Sun QW, Peng L, Zhang L. Seed Dormancy Release and Germination Requirements of Cinnamomum migao, an Endangered and Rare Woody Plant in Southwest China. FRONTIERS IN PLANT SCIENCE 2022; 13:770940. [PMID: 35154219 PMCID: PMC8828499 DOI: 10.3389/fpls.2022.770940] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Accepted: 01/03/2022] [Indexed: 06/14/2023]
Abstract
Seed dormancy is a complex adaptive trait of plants that are influenced by several physiological and environmental factors. The endangered plant Cinnamomum migao is also known to exhibit seed dormancy and low germination, which may influence its regeneration; however, these characteristics remain unexplored. To our knowledge, this study is the first to examine the type of dormancy and improve the germination percentage of C. migao seeds. We evaluated the structure and characteristics of the embryo and endocarp of C. migao seeds as well as the effects of endogenous inhibitors. Furthermore, we assessed the effects of light, stratification, alternating temperature, and gibberellic acid 3 (GA3) on the dormancy release of these seeds. The embryo was well developed the endocarp was water-permeable, and no obvious mechanical hindrance to germination was observed. However, the endocarp and embryo contained phenols and other germination inhibitors. The seed extracts of C. migao delayed the germination of cabbage and ryegrass seeds, which indicates the presence of endogenous inhibitors. These findings suggest that C. migao seeds exhibit physiological dormancy. Light and an alternating temperature (15/20°C) did not influence germination. However, GA3 pretreatment, alternating temperatures, and warm stratification relieved dormancy. GA3 pretreatment combined with the 15°C stratification treatment was most effective in rapidly releasing the C. migao seed dormancy. Our findings may facilitate the storage and conservation of this endangered plant, which is currently underrepresented in ex situ collections.
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Affiliation(s)
| | | | - Xue-feng Xiao
- College of Forestry, Guizhou University, Guiyang, China
| | - Ji-ming Liu
- College of Forestry, Guizhou University, Guiyang, China
| | - Xiao-feng Liao
- Guizhou Province Institute of Mountain Resources, Guiyang, China
| | - Qing-wen Sun
- College of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang, China
| | - Liang Peng
- College of Forestry, Guizhou University, Guiyang, China
| | - Lan Zhang
- College of Forestry, Guizhou University, Guiyang, China
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24
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Rodrigues L, Nogales A, Hansen LD, Santos F, Rato AE, Cardoso H. Exploring the Applicability of Calorespirometry to Assess Seed Metabolic Stability Upon Temperature Stress Conditions- Pisum sativum L. Used as a Case Study. FRONTIERS IN PLANT SCIENCE 2022; 13:827117. [PMID: 35574105 PMCID: PMC9094064 DOI: 10.3389/fpls.2022.827117] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 02/24/2022] [Indexed: 05/17/2023]
Abstract
The availability of phenotyping tools to assist breeding programs in the selection of high-quality crop seeds is of obvious interest with consequences for both seed producers and consumers. Seed germination involves the activation of several metabolic pathways, such as cellular respiration to provide the required ATP and reducing power. This work tested the applicability of calorespirometry, the simultaneous measurement of heat and CO2 rates, as a phenotyping tool to assess seed respiratory properties as a function of temperature. The effect of temperature on seed germination was evaluated after 16 h of seed imbibition by calorespirometric experiments performed in isothermal mode at 15, 20, 25, and 28°C on the seeds of three cultivars of peas (Pisum sativum L.) commonly used in conventional agriculture (cvs. 'Rondo', 'Torta de Quebrar', and 'Maravilha d'América'). Significant differences in metabolic heat rate and CO2 production rate (R CO2 ) as well as in the temperature responses of these parameters were found among the three cultivars. A seed germination trial was conducted during the 6 days of imbibition to evaluate the predictive power of the parameters derived from the calorespirometric measurements. The germination trial showed that the optimal germination temperature was 20°C and low germination rates were observed at extreme temperatures (15 or 28°C). The cv. 'Torta de Quebrar' showed significantly higher germination in comparison with the other two cultivars at all three temperatures. In comparison with the other two cultivars, 'Torta de Quebrar' has the lowest metabolic heat and CO2 rates and the smallest temperature dependence of these measured parameters. Additionally, 'Torta de Quebrar' has the lowest values of growth rate and carbon use efficiency calculated from the measured variables. These data suggest that calorespirometry is a useful tool for phenotyping physiologic efficiency at different temperatures during early germination stages, and can determine the seeds with the highest resilience to temperature variation, in this case 'Torta de Quebrar'.
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Affiliation(s)
- Lénia Rodrigues
- Mediterranean Institute for Agriculture, Environment and Development, Instituto de Formação e Investigação Avançada, Universidade de Évora, Évora, Portugal
| | - Amaia Nogales
- Linking Landscape, Environment, Agriculture and Food, Instituto Superior de Agronomia, Universidade de Lisboa, Lisbon, Portugal
| | - Lee D. Hansen
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT, United States
| | - Fátima Santos
- Centro Nacional de Biotecnología, Unidad de Proteomica, CSIC, Calle Darwin 3, Madrid, Spain
| | - Ana Elisa Rato
- Mediterranean Institute for Agriculture, Environment and Development, Departamento de Fitotecnia, Escola de Ciências e Tecnologia, Universidade de Évora, Évora, Portugal
| | - Hélia Cardoso
- Mediterranean Institute for Agriculture, Environment and Development, Instituto de Formação e Investigação Avançada, Universidade de Évora, Évora, Portugal
- *Correspondence: Hélia Cardoso,
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25
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Pepe M, Hesami M, Jones AMP. Machine Learning-Mediated Development and Optimization of Disinfection Protocol and Scarification Method for Improved In Vitro Germination of Cannabis Seeds. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10112397. [PMID: 34834760 PMCID: PMC8619272 DOI: 10.3390/plants10112397] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 11/01/2021] [Accepted: 11/05/2021] [Indexed: 05/22/2023]
Abstract
In vitro seed germination is a useful tool for developing a variety of biotechnologies, but cannabis has presented some challenges in uniformity and germination time, presumably due to the disinfection procedure. Disinfection and subsequent growth are influenced by many factors, such as media pH, temperature, as well as the types and levels of contaminants and disinfectants, which contribute independently and dynamically to system complexity and nonlinearity. Hence, artificial intelligence models are well suited to model and optimize this dynamic system. The current study was aimed to evaluate the effect of different types and concentrations of disinfectants (sodium hypochlorite, hydrogen peroxide) and immersion times on contamination frequency using the generalized regression neural network (GRNN), a powerful artificial neural network (ANN). The GRNN model had high prediction performance (R2 > 0.91) in both training and testing. Moreover, a genetic algorithm (GA) was subjected to the GRNN to find the optimal type and level of disinfectants and immersion time to determine the best methods for contamination reduction. According to the optimization process, 4.6% sodium hypochlorite along with 0.008% hydrogen peroxide for 16.81 min would result in the best outcomes. The results of a validation experiment demonstrated that this protocol resulted in 0% contamination as predicted, but germination rates were low and sporadic. However, using this sterilization protocol in combination with the scarification of in vitro cannabis seed (seed tip removal) resulted in 0% contamination and 100% seed germination within one week.
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26
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Bautista-Expósito S, Vandenberg A, Peñas E, Frias J, Martínez-Villaluenga C. Lentil and Fava Bean With Contrasting Germination Kinetics: A Focus on Digestion of Proteins and Bioactivity of Resistant Peptides. FRONTIERS IN PLANT SCIENCE 2021; 12:754287. [PMID: 34759946 PMCID: PMC8575454 DOI: 10.3389/fpls.2021.754287] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Accepted: 09/20/2021] [Indexed: 05/03/2023]
Abstract
Germination offers advantages to improve legume protein digestibility as it disintegrates seed structure and hydrolyzes proteins and anti-nutrients. Seed permeability (related to polyphenol content of seed coats) is an important factor affecting the duration of seed germination and its impact on protein digestibility and bioactivity. The objective was to compare the effect of seed germination on protease activity, structure, and proteolysis of four selected legumes with contrasting seed coat polyphenol profiles (gray zero-tannin lentil [GZL], beluga lentil [BL], and dehulled red lentil [DL]; and zero tannin/low vicine-convicine fava bean [ZF]). Protein hydrolysis was characterized during germination and digestion with respect to proteins, peptides, and free amino acids (FAAs). In vitro antihypertensive and antioxidant activities of digests were investigated, and the peptidomic characterization [high-performance liquid chromatography coupled to tandem mass spectrometry (HPLC-MS/MS)] and identification of bioactive fragments in intestinal digests were performed. Regardless of the seed type, germination increased protease activity and reduced the levels of phytic acid, trypsin inhibitors, and tannins (only in BL). A significant proteolysis of the 7S and 11S globulins and a concomitant increase of peptides and FAAs were observed in all sprouted legumes. Digestion kinetics in sprouts revealed a faster generation of FAAs and peptides than in dry seeds, with changes being more evident for DL, associated with a faster imbibition, germination, and sprout growth. In contrast, BL sprouts showed the lowest protein digestibility, likely due to a lower protease activity, seed structure disintegration, and higher anti-nutrient levels in comparison to GZL, DL, and ZF. Moreover, the digestion of sprouts resulted in a higher number of resistant peptides in DL and ZF that matched with previously reported bioactive sequences, suggesting a promising health potential of legume sprouts that was confirmed in vitro. The results suggested that the germination process improved protein digestibility and the health-promoting potential of lentil and fava bean proteins although these changes were more evident in DL due to its rapid imbibition, faster germination, and sprout development. This study will provide important information for either plant breeders to develop legume varieties with permeable seed coats or food producers that could use dehulled seeds for efficient production of sprouts as sustainable food sources of plant proteins with improved nutritional and healthy properties.
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Affiliation(s)
- Sara Bautista-Expósito
- Department of Food Characterization, Quality and Safety, Institute of Food Science, Technology and Nutrition (ICTAN-CSIC), Madrid, Spain
| | - Albert Vandenberg
- Department of Plant Sciences, College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, SK, Canada
| | - Elena Peñas
- Department of Food Characterization, Quality and Safety, Institute of Food Science, Technology and Nutrition (ICTAN-CSIC), Madrid, Spain
| | - Juana Frias
- Department of Food Characterization, Quality and Safety, Institute of Food Science, Technology and Nutrition (ICTAN-CSIC), Madrid, Spain
| | - Cristina Martínez-Villaluenga
- Department of Food Characterization, Quality and Safety, Institute of Food Science, Technology and Nutrition (ICTAN-CSIC), Madrid, Spain
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27
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Application of High Voltage Electrical Discharge Treatment to Improve Wheat Germination and Early Growth under Drought and Salinity Conditions. PLANTS 2021; 10:plants10102137. [PMID: 34685946 PMCID: PMC8538633 DOI: 10.3390/plants10102137] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 10/02/2021] [Accepted: 10/04/2021] [Indexed: 11/21/2022]
Abstract
The environmentally friendly, physical method of high voltage electrical discharge (HVED) was developed to improve the drought and salinity tolerance of two wheat genotypes. Unlike other plasma technologies, HVED treatment involves the discharge of electricity in water. In this study, the effect of HVED pretreatment on wheat germination and early vegetative growth under drought (0%, 15%, 20% and 30% PEG) and salinity (0, 90, 160 and 230 mM NaCl) stress conditions was investigated. HVED-exposed seeds showed altered seed surfaces and became more permeable to water uptake, resulting in higher germination percentages, germination index values, and shoot and root growth under the control and all drought and salinity concentrations. Moreover, the electrical conductivity of the water medium increased significantly, indicating HVED-induced reactions of ionization and dissociations of water molecules occurred. In addition, HVED pretreatment in the salt experiment improved the tolerance index values of the shoots and roots. The most pronounced genotypic variations occurred under the highest stress levels (30% PEG or 230 mM NaCl) and varied with the stress intensity and growth stage. The study results indicate that HVED pretreatment has the potential to improve drought and salt tolerance in wheat.
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28
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Chai M, Queralta Castillo I, Sonntag A, Wang S, Zhao Z, Liu W, Du J, Xie H, Liao F, Yun J, Jiang Q, Sun J, Molina I, Wang ZY. A seed coat-specific β-ketoacyl-CoA synthase, KCS12, is critical for preserving seed physical dormancy. PLANT PHYSIOLOGY 2021; 186:1606-1615. [PMID: 33779764 PMCID: PMC8260136 DOI: 10.1093/plphys/kiab152] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 03/08/2021] [Indexed: 05/21/2023]
Abstract
Physical dormancy in seeds exists widely in seed plants and plays a vital role in maintaining natural seed banks. The outermost cuticle of the seed coat forms a water-impermeable layer, which is critical for establishing seed physical dormancy. We previously set up the legume plant Medicago truncatula as an excellent model for studying seed physical dormancy, and our studies revealed that a class II KNOTTED-like homeobox, KNOX4, is a transcription factor critical for controlling hardseededness. Here we report the function of a seed coat β-ketoacyl-CoA synthase, KCS12. The expression level of KCS12 is significantly downregulated in the knox4 mutant. The KCS12 gene is predominantly expressed in the seed coat, and seed development in the M. truncatula kcs12 mutant is altered. Further investigation demonstrated that kcs12 mutant seeds lost physical dormancy and were able to absorb water without scarification treatment. Chemical analysis revealed that concentrations of C24:0 lipid polyester monomers are significantly decreased in mutant seeds, indicating that KCS12 is an enzyme that controls the production of very long chain lipid species in the seed coat. A chromatin immunoprecipitation assay demonstrated that the expression of KCS12 in the seed coat is directly regulated by the KNOX4 transcription factor. These findings define a molecular mechanism by which KNOX4 and KCS12 control formation of the seed coat and seed physical dormancy.
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Affiliation(s)
- Maofeng Chai
- Grassland Agri-Husbandry Research Center, College of Grassland Science, Qingdao Agricultural University, Qingdao 266109, China
- Noble Research Institute, Ardmore, OK 73401, USA
| | | | - Annika Sonntag
- Department of Biology, Algoma University, Sault Ste. Marie, ON, Canada, P6A 2G4
| | - Shixing Wang
- Grassland Agri-Husbandry Research Center, College of Grassland Science, Qingdao Agricultural University, Qingdao 266109, China
| | - Zhili Zhao
- Noble Research Institute, Ardmore, OK 73401, USA
| | - Wei Liu
- Noble Research Institute, Ardmore, OK 73401, USA
| | - Juan Du
- Noble Research Institute, Ardmore, OK 73401, USA
| | - Hongli Xie
- Grassland Agri-Husbandry Research Center, College of Grassland Science, Qingdao Agricultural University, Qingdao 266109, China
| | - Fuqi Liao
- Noble Research Institute, Ardmore, OK 73401, USA
| | - Jianfei Yun
- Noble Research Institute, Ardmore, OK 73401, USA
| | | | - Juan Sun
- Grassland Agri-Husbandry Research Center, College of Grassland Science, Qingdao Agricultural University, Qingdao 266109, China
| | - Isabel Molina
- Department of Biology, Algoma University, Sault Ste. Marie, ON, Canada, P6A 2G4
| | - Zeng-Yu Wang
- Grassland Agri-Husbandry Research Center, College of Grassland Science, Qingdao Agricultural University, Qingdao 266109, China
- Noble Research Institute, Ardmore, OK 73401, USA
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29
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Huss JC, Gierlinger N. Functional packaging of seeds. THE NEW PHYTOLOGIST 2021; 230:2154-2163. [PMID: 33629369 PMCID: PMC8252473 DOI: 10.1111/nph.17299] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Accepted: 02/16/2021] [Indexed: 05/28/2023]
Abstract
The encapsulation of seeds in hard coats and fruit walls (pericarp layers) fulfils protective and dispersal functions in many plant families. In angiosperms, packaging structures possess a remarkable range of different morphologies and functionalities, as illustrated by thermo and hygro-responsive seed pods and appendages, as well as mechanically strong and water-impermeable shells. Key to these different functionalities are characteristic structural arrangements and chemical modifications of the underlying sclerenchymatous tissues. Although many ecological aspects of hard seed encapsulation have been well documented, a detailed understanding of the relationship between tissue structure and function only recently started to emerge, especially in the context of environmentally driven fruit opening and seed dispersal (responsive encapsulations) and the outstanding durability of some seed coats and indehiscent fruits (static encapsulations). In this review, we focus on the tissue properties of these two systems, with particular consideration of water interactions, mechanical resistance, and force generation. Common principles, as well as unique adaptations, are discussed in different plant species. Understanding how plants integrate a broad range of functions and properties for seed protection during storage and dispersal plays a central role for seed conservation, population dynamics, and plant-based material developments.
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Affiliation(s)
- Jessica C. Huss
- Department of NanobiotechnologyInstitute of BiophysicsUniversity of Natural Resources and Life Sciences (BOKU) ViennaMuthgasse 11/IIVienna1900Austria
| | - Notburga Gierlinger
- Department of NanobiotechnologyInstitute of BiophysicsUniversity of Natural Resources and Life Sciences (BOKU) ViennaMuthgasse 11/IIVienna1900Austria
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30
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Zablatzká L, Balarynová J, Klčová B, Kopecký P, Smýkal P. Anatomy and Histochemistry of Seed Coat Development of Wild ( Pisum sativum subsp. elatius (M. Bieb.) Asch. et Graebn. and Domesticated Pea ( Pisum sativum subsp. sativum L.). Int J Mol Sci 2021; 22:4602. [PMID: 33925728 PMCID: PMC8125792 DOI: 10.3390/ijms22094602] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 04/26/2021] [Accepted: 04/26/2021] [Indexed: 11/16/2022] Open
Abstract
In angiosperms, the mature seed consists of embryo, endosperm, and a maternal plant-derived seed coat (SC). The SC plays a role in seed filling, protects the embryo, mediates dormancy and germination, and facilitates the dispersal of seeds. SC properties have been modified during the domestication process, resulting in the removal of dormancy, mediated by SC impermeability. This study compares the SC anatomy and histochemistry of two wild (JI64 and JI1794) and two domesticated (cv. Cameor and JI92) pea genotypes. Histochemical staining of five developmental stages: 13, 21, 27, 30 days after anthesis (DAA), and mature dry seeds revealed clear differences between both pea types. SC thickness is established early in the development (13 DAA) and is primarily governed by macrosclereid cells. Polyanionic staining by Ruthenium Red indicated non homogeneity of the SC, with a strong signal in the hilum, the micropyle, and the upper parts of the macrosclereids. High peroxidase activity was detected in both wild and cultivated genotypes and increased over the development peaking prior to desiccation. The detailed knowledge of SC anatomy is important for any molecular or biochemical studies, including gene expression and proteomic analysis, especially when comparing different genotypes and treatments. Analysis is useful for other crop-to-wild-progenitor comparisons of economically important legume crops.
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Affiliation(s)
- Lenka Zablatzká
- Department of Botany, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic; (L.Z.); (J.B.); (B.K.); (P.K.)
| | - Jana Balarynová
- Department of Botany, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic; (L.Z.); (J.B.); (B.K.); (P.K.)
| | - Barbora Klčová
- Department of Botany, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic; (L.Z.); (J.B.); (B.K.); (P.K.)
| | - Pavel Kopecký
- Department of Botany, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic; (L.Z.); (J.B.); (B.K.); (P.K.)
- Genetic Resources for Vegetables and Specialty Crops, Crop Research Institute, Šlechtitelů 29, 783 71 Olomouc, Czech Republic
| | - Petr Smýkal
- Department of Botany, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic; (L.Z.); (J.B.); (B.K.); (P.K.)
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31
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Kintl A, Huňady I, Vymyslický T, Ondrisková V, Hammerschmiedt T, Brtnický M, Elbl J. Effect of Seed Coating and PEG-Induced Drought on the Germination Capacity of Five Clover Crops. PLANTS 2021; 10:plants10040724. [PMID: 33917847 PMCID: PMC8068302 DOI: 10.3390/plants10040724] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Revised: 04/01/2021] [Accepted: 04/02/2021] [Indexed: 11/20/2022]
Abstract
The effect of coating the seed of clover crops by water absorbing seed process (WASP) technology pelletization on its germination capacity was studied in conditions of diverse drought intensities simulated by different concentrations of polyethylenglycol (PEG) 8000 solution. Drought resistance was monitored in the seed of five fodder clover species: Anthyllis vulneraria L., Medicago lupulina L., Trifolium repens L., Melilotus albus Medik. and Onobrychis viciifolia Scop. In the seed of given plant species, germination capacity was determined along with the share of dead and hard seeds. Although the coating significantly (p < 0.05) affected the drought resistance of seeds, the germination capacity increased only in conditions of milder drought (simulation with PEG: 0.1–0.3 mol). With the increasing intensity of drought induced by higher PEG concentrations (0.4–0.7 mol) the number of germinable seeds demonstrably decreased and the number of dead seeds increased in the coated seed as compared with the uncoated seed. The coated seed can be appropriate for use in M. lupulina, M. albus and T. repens, while the uncoated seed can be used in A. vulneraria and O. viciifolia.
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Affiliation(s)
- Antonín Kintl
- Agricultural Research, Ltd., 66441 Troubsko, Czech Republic; (A.K.); (I.H.); (T.V.); (V.O.)
| | - Igor Huňady
- Agricultural Research, Ltd., 66441 Troubsko, Czech Republic; (A.K.); (I.H.); (T.V.); (V.O.)
| | - Tomáš Vymyslický
- Agricultural Research, Ltd., 66441 Troubsko, Czech Republic; (A.K.); (I.H.); (T.V.); (V.O.)
| | - Vladěna Ondrisková
- Agricultural Research, Ltd., 66441 Troubsko, Czech Republic; (A.K.); (I.H.); (T.V.); (V.O.)
| | - Tereza Hammerschmiedt
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, 61300 Brno, Czech Republic; (T.H.); (M.B.)
| | - Martin Brtnický
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, 61300 Brno, Czech Republic; (T.H.); (M.B.)
- Faculty of Chemistry, Institute of Chemistry and Technology of Environmental Protection, Brno University of Technology, 62100 Brno, Czech Republic
- Department of Geology and Soil Science, Faculty of Forestry and Wood Technology, Mendel University in Brno, 61300 Brno, Czech Republic
| | - Jakub Elbl
- Agricultural Research, Ltd., 66441 Troubsko, Czech Republic; (A.K.); (I.H.); (T.V.); (V.O.)
- Department of Agrosystems and Bioclimatology, Faculty of AgriSciences, Mendel University in Brno, 61300 Brno, Czech Republic
- Correspondence: ; Tel.: +420-725-295-999
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Soltani A, Walter KA, Wiersma AT, Santiago JP, Quiqley M, Chitwood D, Porch TG, Miklas P, McClean PE, Osorno JM, Lowry DB. The genetics and physiology of seed dormancy, a crucial trait in common bean domestication. BMC PLANT BIOLOGY 2021; 21:58. [PMID: 33482732 PMCID: PMC7821524 DOI: 10.1186/s12870-021-02837-6] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Accepted: 01/11/2021] [Indexed: 05/21/2023]
Abstract
BACKGROUND Physical seed dormancy is an important trait in legume domestication. Although seed dormancy is beneficial in wild ecosystems, it is generally considered to be an undesirable trait in crops due to reduction in yield and / or quality. The physiological mechanism and underlying genetic factor(s) of seed dormancy is largely unknown in several legume species. Here we employed an integrative approach to understand the mechanisms controlling physical seed dormancy in common bean (Phaseolus vulgaris L.). RESULTS Using an innovative CT scan imaging system, we were able to track water movements inside the seed coat. We found that water uptake initiates from the bean seed lens. Using a scanning electron microscopy (SEM) we further identified several micro-cracks on the lens surface of non-dormant bean genotypes. Bulked segregant analysis (BSA) was conducted on a bi-parental RIL (recombinant inbred line) population, segregating for seed dormancy. This analysis revealed that the seed water uptake is associated with a single major QTL on Pv03. The QTL region was fine-mapped to a 118 Kb interval possessing 11 genes. Coding sequence analysis of candidate genes revealed a 5-bp insertion in an ortholog of pectin acetylesterase 8 that causes a frame shift, loss-of-function mutation in non-dormant genotype. Gene expression analysis of the candidate genes in the seed coat of contrasting genotypes indicated 21-fold lower expression of pectin acetylesterase 8 in non-dormant genotype. An analysis of mutational polymorphism was conducted among wild and domesticated beans. Although all the wild beans possessed the functional allele of pectin acetylesterase 8, the majority (77%) of domesticated beans had the non-functional allele suggesting that this variant was under strong selection pressure through domestication. CONCLUSIONS In this study, we identified the physiological mechanism of physical seed dormancy and have identified a candidate allele causing variation in this trait. Our findings suggest that a 5-bp insertion in an ortholog of pectin acetylesterase 8 is likely a major causative mutation underlying the loss of seed dormancy during domestication. Although the results of current study provide strong evidences for the role of pectin acetylesterase 8 in seed dormancy, further confirmations seem necessary by employing transgenic approaches.
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Affiliation(s)
- Ali Soltani
- Plant Resilience Institute, Michigan State University, East Lansing, MI, USA.
- Department of Plant Biology, Michigan State University, East Lansing, MI, USA.
| | - Katelynn A Walter
- Plant Resilience Institute, Michigan State University, East Lansing, MI, USA
- Department of Plant Biology, Michigan State University, East Lansing, MI, USA
| | - Andrew T Wiersma
- Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, USA
| | - James P Santiago
- Plant Resilience Institute, Michigan State University, East Lansing, MI, USA
- Department of Plant Biology, Michigan State University, East Lansing, MI, USA
| | - Michelle Quiqley
- Department of Horticulture, Michigan State University, East Lansing, MI, USA
- Department of Computational Mathematics, Science and Engineering, Michigan State University, East Lansing, MI, USA
| | - Daniel Chitwood
- Department of Horticulture, Michigan State University, East Lansing, MI, USA
- Department of Computational Mathematics, Science and Engineering, Michigan State University, East Lansing, MI, USA
| | - Timothy G Porch
- USDA-ARS, Tropical Agriculture Research Station, Mayaguez, PR, USA
| | - Phillip Miklas
- USDA-ARS, Grain Legume Genetics Physiology Research Unit, Prosser, WA, USA
| | - Phillip E McClean
- Department of Plant Sciences, North Dakota State University, Fargo, ND, USA
| | - Juan M Osorno
- Department of Plant Sciences, North Dakota State University, Fargo, ND, USA
| | - David B Lowry
- Plant Resilience Institute, Michigan State University, East Lansing, MI, USA
- Department of Plant Biology, Michigan State University, East Lansing, MI, USA
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Genetic Analysis of Walnut ( Juglans regia L.) Pellicle Pigment Variation Through a Novel, High-Throughput Phenotyping Platform. G3-GENES GENOMES GENETICS 2020; 10:4411-4424. [PMID: 33008832 PMCID: PMC7718756 DOI: 10.1534/g3.120.401580] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Walnut pellicle color is a key quality attribute that drives consumer preference and walnut sales. For the first time a high-throughput, computer vision-based phenotyping platform using a custom algorithm to quantitatively score each walnut pellicle in L* a* b* color space was deployed at large-scale. This was compared to traditional qualitative scoring by eye and was used to dissect the genetics of pellicle pigmentation. Progeny from both a bi-parental population of 168 trees (‘Chandler’ × ‘Idaho’) and a genome-wide association (GWAS) with 528 trees of the UC Davis Walnut Improvement Program were analyzed. Color phenotypes were found to have overlapping regions in the ‘Chandler’ genetic map on Chr01 suggesting complex genetic control. In the GWAS population, multiple, small effect QTL across Chr01, Chr07, Chr08, Chr09, Chr10, Chr12 and Chr13 were discovered. Marker trait associations were co-localized with QTL mapping on Chr01, Chr10, Chr14, and Chr16. Putative candidate genes controlling walnut pellicle pigmentation were postulated.
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Grafi G. Dead but Not Dead End: Multifunctional Role of Dead Organs Enclosing Embryos in Seed Biology. Int J Mol Sci 2020; 21:ijms21218024. [PMID: 33126660 PMCID: PMC7662896 DOI: 10.3390/ijms21218024] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Revised: 10/23/2020] [Accepted: 10/27/2020] [Indexed: 01/17/2023] Open
Abstract
Dry fruits consist of two types, dehiscent and indehiscent, whereby the fruit is splitting open or remains closed at maturity, respectively. The seed, the dispersal unit (DU) of dehiscent fruits, is composed of three major parts, the embryo and the food reserve, encapsulated by the maternally-derived organ, the seed coat. Indehiscent fruit constitutes the DU in which the embryo is covered by two protective layers (PLs), the seed coat and the fruit coat. In grasses, the caryopsis, a one-seeded fruit, can be further enclosed by the floral bracts to generate two types of DUs, florets and spikelets. All protective layers enclosing the embryo undergo programmed cell death (PCD) at maturation and are thought to provide mainly a physical shield for embryo protection and a means for dispersal. In this review article, I wish to highlight the elaborate function of these dead organs enclosing the embryo as unique storage structures for beneficial substances and discuss their potential role in seed biology and ecology.
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Affiliation(s)
- Gideon Grafi
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion 84990, Israel
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Zabala G, Kour A, Vodkin LO. Overexpression of an ethylene-forming ACC oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max. BMC Genomics 2020; 21:716. [PMID: 33066734 PMCID: PMC7566151 DOI: 10.1186/s12864-020-07130-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Accepted: 10/08/2020] [Indexed: 11/29/2022] Open
Abstract
BACKGROUND To elucidate features of seed development, we investigated the transcriptome of a soybean isoline from the germplasm collection that contained an introgressed allele known as minute hilum (mi) which confers a smaller hilum region where the seed attaches to the pod and also results in seed coat cracking surrounding the hilum region. RESULTS RNAs were extracted from immature seed from an extended hilum region (i.e., the hilum and a small ring of tissue surrounding the hilum in which the cracks form) at three different developmental stages:10-25, 25-50 and 50-100 mg seed fresh weight in two independent replicates for each stage. The transcriptomes of these samples from both the Clark isoline containing the mi allele (PI 547628, UC413, ii R t mi G), and its recurrent Clark 63 parent isoline (PI 548532, UC7, ii R T Mi g), which was used for six generations of backcrossing, were compared for differential expression of 88,648 Glyma models of the soybean genome Wm82.a2. The RNA sequence data obtained from the 12 cDNA libraries were subjected to padj value < 0.05 and at least two-fold expression differences to select with confidence genes differentially expressed in the hilum-containing tissue of the seed coat between the two lines. Glyma.09G008400 annotated as encoding an ethylene forming enzyme, ACC oxidase (ACO), was found to be highly overexpressed in the mi hilum region at 165 RPKMs (reads per kilobase per million mapped reads) compared to the standard line at just 0.03 RPKMs. Evidence of changes in expression of genes downstream of the ethylene pathway included those involved in auxin and gibberellin hormone action and extensive differences in expression of cell wall protein genes. These changes are postulated to determine the restricted hilum size and cracking phenotypes. CONCLUSIONS We present transcriptome and phenotypic evidence that substantially higher expression of an ethylene-forming ACO gene likely shifts hormone balance and sets in motion downstream changes resulting in a smaller hilum phenotype and the cracks observed in the minute hilum (mi) isoline as compared to its recurrent parent.
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Affiliation(s)
- Gracia Zabala
- Department of Crop Sciences, University of Illinois, Urbana, IL, 61981, USA
| | - Anupreet Kour
- Department of Crop Sciences, University of Illinois, Urbana, IL, 61981, USA
- Present address: Robert M. Berne Cardiovascular Research Institute, University of Virginia School of Medicine, Charlottesville, Virginia, 22908, USA
| | - Lila O Vodkin
- Department of Crop Sciences, University of Illinois, Urbana, IL, 61981, USA.
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Mapping QTL for important seed traits in an interspecific F2 population of pigeonpea. 3 Biotech 2020; 10:434. [PMID: 32999812 DOI: 10.1007/s13205-020-02423-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Accepted: 08/31/2020] [Indexed: 10/23/2022] Open
Abstract
Seed traits present important breeding targets for enhancing grain yield and quality in various grain legume crops including pigeonpea. The present study reports significant genetic variation for six seed traits including seed length (SL), seed width (SW), seed thickness (ST), seed weight (SWT), electrical conductivity (EC) and water uptake (WU) among Cajanus cajan (L.) Millspaugh acc. ICPL 20340 and Cajanus scarabaeoides (L.) Thouars acc. ICP 15739 and an F2 population derived from this interspecific cross. Maximum phenotypic values recorded for the F2 population were higher than observed in the parent ICPL 20340 [F2 max vs ICPL 20340: SW (7.05 vs 5.38), ST (4.63 vs 4.51), EC (65.17 vs 9.72), WU (213.17 vs 109.5)], which suggested contribution of positive alleles from the wild parent, ICP 15739. Concurrently, to identify the QTL controlling these seed traits, we assayed two parents and 94 F2 individuals with 113 polymorphic simple sequence repeat (SSR) markers. In the F2 population, 98 of the 113 SSRs showed Mendelian segregation ratio 1:2:1, whereas significant deviations were observed for 15 SSRs with their χ 2 values ranging between 6.26 and 20.62. A partial genetic linkage map comprising 83 SSR loci was constructed. QTL analysis identified 15 marker-trait associations (MTAs) for seed traits on four linkage groups i.e. LG01, LG02, LG04 and LG05. Phenotypic variations (PVs) explained by these QTL ranged from 4.4 (WU) to 19.91% (EC). These genomic regions contributing significantly towards observed variability of seed traits would serve as potential candidates for future research that aims to improve seed traits in pigeonpea.
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Ku YS, Contador CA, Ng MS, Yu J, Chung G, Lam HM. The Effects of Domestication on Secondary Metabolite Composition in Legumes. Front Genet 2020; 11:581357. [PMID: 33193705 PMCID: PMC7530298 DOI: 10.3389/fgene.2020.581357] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Accepted: 08/31/2020] [Indexed: 12/13/2022] Open
Abstract
Legumes are rich in secondary metabolites, such as polyphenols, alkaloids, and saponins, which are important defense compounds to protect the plant against herbivores and pathogens, and act as signaling molecules between the plant and its biotic environment. Legume-sourced secondary metabolites are well known for their potential benefits to human health as pharmaceuticals and nutraceuticals. During domestication, the color, smell, and taste of crop plants have been the focus of artificial selection by breeders. Since these agronomic traits are regulated by secondary metabolites, the basis behind the genomic evolution was the selection of the secondary metabolite composition. In this review, we will discuss the classification, occurrence, and health benefits of secondary metabolites in legumes. The differences in their profiles between wild legumes and their cultivated counterparts will be investigated to trace the possible effects of domestication on secondary metabolite compositions, and the advantages and drawbacks of such modifications. The changes in secondary metabolite contents will also be discussed at the genetic level to examine the genes responsible for determining the secondary metabolite composition that might have been lost due to domestication. Understanding these genes would enable breeding programs and metabolic engineering to produce legume varieties with favorable secondary metabolite profiles for facilitating adaptations to a changing climate, promoting beneficial interactions with biotic factors, and enhancing health-beneficial secondary metabolite contents for human consumption.
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Affiliation(s)
- Yee-Shan Ku
- Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, China
| | - Carolina A. Contador
- Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, China
| | - Ming-Sin Ng
- Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, China
| | - Jeongjun Yu
- Department of Biotechnology, Chonnam National University, Yeosu, South Korea
| | - Gyuhwa Chung
- Department of Biotechnology, Chonnam National University, Yeosu, South Korea
| | - Hon-Ming Lam
- Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, China
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Ali MH, Sobze JM, Pham TH, Nadeem M, Liu C, Galagedara L, Cheema M, Thomas R. Carbon Nanotubes Improved the Germination and Vigor of Plant Species from Peatland Ecosystem Via Remodeling the Membrane Lipidome. NANOMATERIALS 2020; 10:nano10091852. [PMID: 32947854 PMCID: PMC7557389 DOI: 10.3390/nano10091852] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Revised: 09/10/2020] [Accepted: 09/11/2020] [Indexed: 12/03/2022]
Abstract
Application of the nanopriming technique to alleviate seed dormancy has shown promising results in various agricultural crop species. However, there is a dearth of knowledge regarding its potential use in native peatland boreal forest species to alleviate seed dormancy and improve their propagation or vigor for forest reclamation activities. Herein, we demonstrate the use of nanopriming with carbon nanotubes (CNT) to alleviate seed dormancy, improved seed germination, and seedling vigor in two boreal peatland species. Bog birch (Betula pumila L.) and Labrador tea (Rhododendron groenlandicum L.) seeds with embryo or seed coat dormancy were nanoprimed with either 20 or 40 µg/mL CNT, cold stratified at 2–4 °C for 15 days, and allowed to germinate at room temperature. The emerged seedlings’ lipidome was assessed to decipher the role of lipid metabolism in alleviating seed dormancy. We observed significant (p < 0.05) improvement in seedling germination and seedling vigor in seeds primed with multiwalled carbon nanotubes functionalized with carboxylic acids. Phosphatidylcholine (PC 18:1/18:3), phosphatidylglycerol (PG 16:1/18:3), and lysophosphatidylcholine (LPC 18:3) molecular species (C18:3 enriched) were observed to be highly correlated with the increased seed germination percentages and the enhanced seedling vigor. Mechanistically, it appears that carbon nanoprimed seeds following stratification are effective in mediating seed dormancy by remodeling the seed membrane lipids (C18:3 enriched PC, PG, and LPC) in both peatland boreal forest species. The study results demonstrate that nanopriming may provide a solution to resolve seed dormancy issues by enhancing seed germination, propagation, and seedling vigor in non-resource boreal forest species ideally suited for forest reclamation following anthropogenic disturbances.
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Affiliation(s)
- Md. Hossen Ali
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
| | - Jean-Marie Sobze
- Northern Alberta Institute of Technology, Boreal Research Institute, 8102-99 Avenue, Peace River, AB T8S 1R2, Canada;
| | - Thu Huong Pham
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
| | - Muhammad Nadeem
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
- Correspondence: (M.N.); (R.T.)
| | - Chen Liu
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
| | - Lakshman Galagedara
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
| | - Mumtaz Cheema
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
| | - Raymond Thomas
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
- Correspondence: (M.N.); (R.T.)
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Carruggio F, Onofri A, Impelluso C, Giusso del Galdo G, Scopece G, Cristaudo A. Seed Dormancy Breaking and Germination in Bituminaria basaltica and B. bituminosa (Fabaceae). PLANTS 2020; 9:plants9091110. [PMID: 32867404 PMCID: PMC7570033 DOI: 10.3390/plants9091110] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 08/24/2020] [Accepted: 08/25/2020] [Indexed: 01/05/2023]
Abstract
Most legumes are well-known for the physical dormancy of their seeds; hence, the implementation of appropriate scarification techniques is essential for introducing new legume crops within agricultural systems. This study investigated morpho-anatomical traits and dormancy-breaking requirements in two taxa of the genus Bituminaria: the widespread B. bituminosa and the point endemic B. basaltica. As the species under investigation show monospermic indehiscent legumes, pods were used in this research. We performed pod trait measurements, light microscopy observations on the seed coat anatomical structure, and germination tests after mechanical, thermal, and chemical scarification treatments for seed dormancy breaking. Moreover, germination performance at different pod maturity stages and storage times was tested. Differences in morpho-anatomical traits were found, with B. basaltica having a thicker palisade cell layer and B. bituminosa showing larger pods. All of the scarification treatments proved to be able to break physical dormancy, with mechanical and chemical scarification being the most effective methods in both species. Nevertheless, dormancy-breaking treatments performed better in B. bituminosa. Seeds at early pod maturity stages showed higher germination capacity in both species. Overall, this research provided background knowledge on seed collection time, storage strategy, and effective pre-sowing treatment, which might contribute to enhance propagation and use of Bituminaria species for multiple purposes. Under this perspective, the future characterization of additional Bituminaria genetic resources from other Mediterranean populations will have remarkable importance.
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Affiliation(s)
- Francesca Carruggio
- Department of Biological, Geological and Environmental Sciences, Germplasm Bank (BGS-CT), University of Catania, 95128 Catania, Italy; (F.C.); (C.I.)
| | - Andrea Onofri
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, 06121 Perugia, Italy;
| | - Carmen Impelluso
- Department of Biological, Geological and Environmental Sciences, Germplasm Bank (BGS-CT), University of Catania, 95128 Catania, Italy; (F.C.); (C.I.)
| | - Gianpietro Giusso del Galdo
- Department of Biological, Geological and Environmental Sciences, Hortus Botanicus Catinensis, University of Catania, 95125 Catania, Italy;
| | - Giovanni Scopece
- Department of Biology, University of Naples Federico II, Complesso Universitario MSA, 80126 Naples, Italy;
| | - Antonia Cristaudo
- Department of Biological, Geological and Environmental Sciences, Germplasm Bank (BGS-CT), University of Catania, 95128 Catania, Italy; (F.C.); (C.I.)
- Correspondence: ; Tel.: +39-366-1842748
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Erfatpour M, Pauls KP. A R2R3-MYB gene-based marker for the non-darkening seed coat trait in pinto and cranberry beans (Phaseolus vulgaris L.) derived from 'Wit-rood boontje'. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2020; 133:1977-1994. [PMID: 32112124 PMCID: PMC7237406 DOI: 10.1007/s00122-020-03571-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2019] [Accepted: 02/21/2020] [Indexed: 05/28/2023]
Abstract
KEY MESSAGE The gene Phvul.010G130600 which codes for a MYB was shown to be tightly associated with seed coat darkening in Phaseolus vulgaris and a single nucleotide deletion in the allele in Wit-rood disrupts a transcription activation region that likely prevents its functioning in this non-darkening genotype. The beige and white background colors of the seed coats of conventional pinto and cranberry beans turn brown through a process known as postharvest darkening (PHD). Seed coat PHD is attributed to proanthocyanidin accumulation and its subsequent oxidation in the seed coat. The J gene is an uncharacterized classical genetic locus known to be responsible for PHD in common bean (P. vulgaris) and individuals that are homozygous for its recessive allele have a non-darkening (ND) seed coat phenotype. A previous study identified a major colorimetrically determined QTL for seed coat color on chromosome 10 that was associated with the ND trait. The objectives of this study were to identify a gene associated with seed coat postharvest darkening in common bean and understand its function in promoting seed coat darkening. Amplicon sequencing of 21 candidate genes underlying the QTL associated with the ND trait revealed a single nucleotide deletion (c.703delG) in the candidate gene Phvul.010G130600 in non-darkening recombinant inbred lines derived from crosses between ND 'Wit-rood boontje' and a regular darkening pinto genotype. In silico analysis indicated that Phvul.010G130600 encodes a protein with strong amino acid sequence identity (70%) with a R2R3-MYB-type transcription factor MtPAR, which has been shown to regulate proanthocyanidin biosynthesis in Medicago truncatula seed coat tissue. The deletion in the 'Wit-rood boontje' allele of Phvul.010G130600 likely causes a translational frame shift that disrupts the function of a transcriptional activation domain contained in the C-terminus of the R2R3-MYB. A gene-based dominant marker was developed for the dominant allele of Phvul.010G130600 which can be used for marker-assisted selection of ND beans.
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Affiliation(s)
- M Erfatpour
- Department of Plant Agriculture, University of Guelph, Guelph, ON, N1G 2W1, Canada
| | - K P Pauls
- Department of Plant Agriculture, University of Guelph, Guelph, ON, N1G 2W1, Canada.
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Castillo NR, Melgarejo LM, Blair MW. Seed Structural Variability and Germination Capacity in Passiflora edulis Sims f. edulis. FRONTIERS IN PLANT SCIENCE 2020; 11:498. [PMID: 32547568 PMCID: PMC7274152 DOI: 10.3389/fpls.2020.00498] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 04/03/2020] [Indexed: 06/11/2023]
Abstract
Purple passion fruit, Passiflora edulis Sims f. edulis, is an important semi-perennial, fruit bearing vine originating in South America that produces a commercial tropical juice pulp for international and national consumption. Within the round purple passion fruit are a large number of membranous seed sacs each containing individual seeds. Little is known about the seed anatomy of the commercial passion fruit, differences between wild collected and commercial types, and its effect on seedling germination. Therefore, our main objective for this study was to analyze the seed anatomy variability of different germplasm as well as the effect on viability and germination of the seeds of this species. Germplasm was evaluated from three sources: (1) commercial cultivars grown in current production areas, (2) genebank accession from the national seed bank, and (3) landraces collected across different high and mid-elevation sites of the Andean region. A total of 12 morphometric descriptors related to seed anatomy were evaluated on the 56 genotypes, of which three were most informative: Angle to the vertex which is related to the shape of the seed, the thickness of the tegument and the horizontal length; separating the seed according to its source of origin. Germination was found to be positively correlated with the number (r = 0.789) and depth (r = 0.854) of seed pitting. Seeds of the commercial cultivars had more seed pits and higher germination compared to seeds of landraces or genebank accessions showing a possible effect of domestication on the crop. Interestingly, passion fruits often germinate during the rainy season as escaped or wild seedlings especially in the disturbed landscapes of coffee plantations, so some dormancy is needed but faster germination is needed for intensive cultivation. Harnessing passion fruit diversity would be useful as the semi-domesticated landraces have valuable adaptation characteristics to combine with rapid germination selected in the commercial cultivars. The variability of seed pitting with cultivars more pitted than landraces possibly resulting in faster germination may indicate that purple passion fruit is still undergoing a process of selection and domestication for this trait.
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Affiliation(s)
- Nohra Rodríguez Castillo
- Laboratory of Plant Physiology and Biochemistry, Department of Biology, Universidad Nacional de Colombia, Bogotá, Colombia
| | - Luz Marina Melgarejo
- Laboratory of Plant Physiology and Biochemistry, Department of Biology, Universidad Nacional de Colombia, Bogotá, Colombia
| | - Matthew Wohlgemuth Blair
- Department of Agricultural and Environmental Sciences, Tennessee State University, Nashville, TN, United States
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Wu X, Wang Y, Tang H. Quantitative Metabonomic Analysis Reveals the Germination-Associated Dynamic and Systemic Biochemical Changes for Mung-Bean ( Vigna radiata) Seeds. J Proteome Res 2020; 19:2457-2470. [PMID: 32393034 DOI: 10.1021/acs.jproteome.0c00181] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Seed germination is essential for plant survival, germplasm resource preservation, and worldwide food supplies, although the germination-associated seed biochemical variations are not fully understood. With the NMR-based metabonomics, we quantitatively analyzed the comprehensive metabolite composition (metabonome) of mung-bean (Vigna radiata) seeds at eight time points of germination covering all three phases. We found that mung-bean seed metabonomes were dominated by 63 metabolites including lipids, amino acids, oligo-/monosaccharides, cyclitols, cholines, organic acids, nucleotides/-sides, nicotinates, and the shikimate pathway-mediated secondary metabolites. During germination, metabolic changes included mainly the degradation of proteins and raffinose family oligosaccharides, glycolysis, tricarboxylic acid (TCA) cycle, anaerobic respiration, biosynthesis of osmolytes and antioxidants together with the metabolisms of nucleotides/-sides, nicotinates, and amino acids. Oligosaccharide degradation was the primary energy source for germination, which coupled with the mobilization of starch and protein storages to produce sugars and amino acids for biomaterial and energy generations. Osmotic and redox regulations were prerequisites for seed germination together with mitochondrial reparations and generations to enable TCA cycle. During the postgermination growth stage (phase-3), the use of small molecules including amino acids and saccharides was switched to meet the growth demands of radicle cells. Small metabolites passed freely through seed testa leaking into the culture media during early germination but were reabsorbed by seed cells around the postgermination growth stage. Extra after-ripening accelerated these metabolic processes of seeds in phase-1, especially the biosynthesis of cyclitols, choline, and nicotinates, increasing the germination uniformity in terms of speed and percentage. Germination-resistant seeds were incapable of activating the germination-associated metabolic processes.
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Affiliation(s)
- Xiangyu Wu
- State Key Laboratory of Genetic Engineering, Zhongshan Hospital and School of Life Sciences, Human Phenome Institute, Metabonomics and Systems Biology Laboratory at Shanghai International Centre for Molecular Phenomics, Fudan University, Shanghai 200438, P. R. China.,CAS Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Innovation Academy for Precision Measurement Science and Technology, CAS, Wuhan 430071, P. R. China
| | - Yunlong Wang
- State Key Laboratory of Genetic Engineering, Zhongshan Hospital and School of Life Sciences, Human Phenome Institute, Metabonomics and Systems Biology Laboratory at Shanghai International Centre for Molecular Phenomics, Fudan University, Shanghai 200438, P. R. China
| | - Huiru Tang
- State Key Laboratory of Genetic Engineering, Zhongshan Hospital and School of Life Sciences, Human Phenome Institute, Metabonomics and Systems Biology Laboratory at Shanghai International Centre for Molecular Phenomics, Fudan University, Shanghai 200438, P. R. China
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Renzi JP, Duchoslav M, Brus J, Hradilová I, Pechanec V, Václavek T, Machalová J, Hron K, Verdier J, Smýkal P. Physical Dormancy Release in Medicago truncatula Seeds Is Related to Environmental Variations. PLANTS (BASEL, SWITZERLAND) 2020; 9:E503. [PMID: 32295289 PMCID: PMC7238229 DOI: 10.3390/plants9040503] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 04/13/2020] [Accepted: 04/13/2020] [Indexed: 12/26/2022]
Abstract
Seed dormancy and timing of its release is an important developmental transition determining the survival of individuals, populations, and species in variable environments. Medicago truncatula was used as a model to study physical seed dormancy at the ecological and genetics level. The effect of alternating temperatures, as one of the causes releasing physical seed dormancy, was tested in 178 M. truncatula accessions over three years. Several coefficients of dormancy release were related to environmental variables. Dormancy varied greatly (4-100%) across accessions as well as year of experiment. We observed overall higher physical dormancy release under more alternating temperatures (35/15 °C) in comparison with less alternating ones (25/15 °C). Accessions from more arid climates released dormancy under higher experimental temperature alternations more than accessions originating from less arid environments. The plasticity of physical dormancy can probably distribute the germination through the year and act as a bet-hedging strategy in arid environments. On the other hand, a slight increase in physical dormancy was observed in accessions from environments with higher among-season temperature variation. Genome-wide association analysis identified 136 candidate genes related to secondary metabolite synthesis, hormone regulation, and modification of the cell wall. The activity of these genes might mediate seed coat permeability and, ultimately, imbibition and germination.
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Affiliation(s)
- Juan Pablo Renzi
- Instituto Nacional de Tecnología Agropecuaria, Hilario Ascasubi 8142, Argentina;
| | - Martin Duchoslav
- Department of Botany, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic; (M.D.); (I.H.)
| | - Jan Brus
- Department of Geoinformatics, Palacký University, 17. listopadu 50, 771 46 Olomouc, Czech Republic; (J.B.); (V.P.)
| | - Iveta Hradilová
- Department of Botany, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic; (M.D.); (I.H.)
| | - Vilém Pechanec
- Department of Geoinformatics, Palacký University, 17. listopadu 50, 771 46 Olomouc, Czech Republic; (J.B.); (V.P.)
| | - Tadeáš Václavek
- Department of Mathematical Analysis and Applications of Mathematics, Palacký University, 17. listopadu 12, 771 46 Olomouc, Czech Republic; (T.V.); (J.M.); (K.H.)
| | - Jitka Machalová
- Department of Mathematical Analysis and Applications of Mathematics, Palacký University, 17. listopadu 12, 771 46 Olomouc, Czech Republic; (T.V.); (J.M.); (K.H.)
| | - Karel Hron
- Department of Mathematical Analysis and Applications of Mathematics, Palacký University, 17. listopadu 12, 771 46 Olomouc, Czech Republic; (T.V.); (J.M.); (K.H.)
| | - Jerome Verdier
- UMR 1345 Institut de Recherche en Horticulture et Semences, Agrocampus Ouest, INRA, Université d’Angers, SFR 4207 QUASAV, 49070 Beaucouzé, France;
| | - Petr Smýkal
- Department of Botany, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic; (M.D.); (I.H.)
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Montanha GS, Rodrigues ES, Marques JPR, de Almeida E, Colzato M, Pereira de Carvalho HW. Zinc nanocoated seeds: an alternative to boost soybean seed germination and seedling development. SN APPLIED SCIENCES 2020. [DOI: 10.1007/s42452-020-2630-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
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Chen F, Zhou W, Yin H, Luo X, Chen W, Liu X, Wang X, Meng Y, Feng L, Qin Y, Zhang C, Yang F, Yong T, Wang X, Liu J, Du J, Liu W, Yang W, Shu K. Shading of the mother plant during seed development promotes subsequent seed germination in soybean. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:2072-2084. [PMID: 31925954 PMCID: PMC7242070 DOI: 10.1093/jxb/erz553] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Accepted: 12/12/2019] [Indexed: 05/03/2023]
Abstract
The effect of shading during seed development on subsequent germination remains largely unknown. In this study, two soybean (Glycine max) seed production systems, monocropping (MC) and maize-soybean intercropping (IC), were employed to examine the effects of shading of the mother plant on subsequent seed germination. Compared to the MC soybean seeds, which received light, the developing IC seeds were exposed to shade resulting from the taller neighboring maize plants. The IC seeds germinated faster than the MC seeds, although there was no significant difference in the thickness of the seed coat. The concentration of soluble pro-anthocyanidin in the IC seed coat was significantly lower than that in the MC seed coat. Changes in the concentrations of several types of fatty acids in IC seeds were also observed, the nature of which were consistent with the effect on germination. The expression levels of genes involved in abscisic acid (ABA) biosynthesis were down-regulated in IC seeds, while the transcription levels of the genes related to gibberellin (GA) biosynthesis were up-regulated. This was consistently reflected in decreased ABA concentrations and increased active GA4 concentrations in IC seeds, resulting in an increased GA4/ABA ratio. Our results thus indicated that shading of the mother plant during seed development in soybean promoted subsequent germination by mediating the biosynthesis of pro-anthocyanidins, fatty acids, and phytohormones.
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Affiliation(s)
- Feng Chen
- School of Ecology and Environment, Northwestern Polytechnical University, Xi’an, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Wenguan Zhou
- School of Ecology and Environment, Northwestern Polytechnical University, Xi’an, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Han Yin
- School of Ecology and Environment, Northwestern Polytechnical University, Xi’an, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Xiaofeng Luo
- School of Ecology and Environment, Northwestern Polytechnical University, Xi’an, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Wei Chen
- School of Ecology and Environment, Northwestern Polytechnical University, Xi’an, China
| | - Xin Liu
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
- College of Agronomy, Shandong Agricultural University, Taian, China
| | - Xingcai Wang
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Yongjie Meng
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Lingyang Feng
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Yuanyuan Qin
- Wuhan Metware Biotechnology Co., Ltd., Wuhan, China
| | | | - Feng Yang
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Taiwen Yong
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Xiaochun Wang
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Jiang Liu
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Junbo Du
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Weiguo Liu
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Wenyu Yang
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Kai Shu
- School of Ecology and Environment, Northwestern Polytechnical University, Xi’an, China
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Ghaleb W, Ahmed LQ, Escobar-Gutiérrez AJ, Julier B. The History of Domestication and Selection of Lucerne: A New Perspective From the Genetic Diversity for Seed Germination in Response to Temperature and Scarification. FRONTIERS IN PLANT SCIENCE 2020; 11:578121. [PMID: 33552093 PMCID: PMC7860617 DOI: 10.3389/fpls.2020.578121] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Accepted: 12/22/2020] [Indexed: 05/06/2023]
Abstract
Lucerne (Medicago sativa), a major perennial pasture legume, belongs to a species complex that includes several subspecies with wild and cultivated populations. Stand establishment may be compromised by poor germination. Seed scarification, deterioration and temperature have an impact on germination. The objective of this study was to analyse the genetic diversity of lucerne germination in response to three factors: (1) temperature, with seven constant temperatures ranging from 5 to 40°C, was tested on 38 accessions, (2) seed scarification was tested on the same accessions at 5 and 22°C, (3) seed deterioration was tested on two accessions and two seed lots at the seven temperatures. The germination dynamics of seed lots over time was modelled and three parameters were analysed: germinability (germination capacity), maximum germination rate (maximum% of seeds germinating per time unit), and lag time before the first seed germinates. Seed scarification enhanced germinability at both temperatures and its effect was much higher on falcata and wild sativa accessions. Incomplete loss of the hardseededness trait during domestication and selection is hypothesised, indicating that the introduction of wild material in breeding programmes should be followed by the selection for germinability without scarification. Seed lots with altered germinability had low germination at extreme temperatures, both cold and hot, suggesting that mild temperatures are required to promote germination of damaged seed lots. A large genetic diversity was revealed for germination (both capacity and rate) in response to temperature. All accessions had an optimal germination at 15 or 22°C and a poor germination at 40°C. The sativa varieties and landraces had a high germination from 5 to 34°C while the germination of falcata and the wild sativa accessions were weakened at 5 or 34°C, respectively. These differences are interpreted in terms of adaptation to the climate of their geographical origin regions in order to escape frost or heat/drought risks. These new findings give insights on adaptation and domestication of lucerne in its wide geographic area. They suggest further improvement of germination is needed, especially when introducing wild material in breeding pools to remove scarification requirements and to limit differences in response to temperature.
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Hu X, Yang L, Zhang Z. Non-destructive identification of single hard seed via multispectral imaging analysis in six legume species. PLANT METHODS 2020; 16:116. [PMID: 32863853 PMCID: PMC7448449 DOI: 10.1186/s13007-020-00659-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Accepted: 08/18/2020] [Indexed: 05/13/2023]
Abstract
BACKGROUND Physical dormancy (hard seed) occurs in most species of Leguminosae family and has great consequences not only for ecological adaptation but also for agricultural practice of these species. A rapid, nondestructive and on-site screening method to detect hard seed within species is fundamental important for maintaining seed vigor and germplasm storage as well as understanding seed adaptation to various environment. In this study, the potential of multispectral imaging with object-wise multivariate image analysis was evaluated as a way to identify hard and soft seeds in Acacia seyal, Galega orientulis, Glycyrrhiza glabra, Medicago sativa, Melilotus officinalis, and Thermopsis lanceolata. Principal component analysis (PCA), linear discrimination analysis (LDA), and support vector machines (SVM) methods were applied to classify hard and soft seeds according to their morphological features and spectral traits. RESULTS The performance of discrimination model via multispectral imaging analysis was varied with species. For M. officinalis, M. sativa, and G. orientulis, an excellent classification could be achieved in an independent validation data set. LDA model had the best calibration and validation abilities with the accuracy up to 90% for M. sativa. SVM got excellent seed discrimination results with classification accuracy of 91.67% and 87.5% for M. officinalis and G. orientulis, respectively. However, both LDA and SVM model failed to discriminate hard and soft seeds in A. seyal, G. glabra, and T. lanceolate. CONCLUSIONS Multispectral imaging together with multivariate analysis could be a promising technique to identify single hard seed in some legume species with high efficiency. More legume species with physical dormancy need to be studied in future research to extend the use of multispectral imaging techniques.
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Affiliation(s)
- Xiaowen Hu
- State Key Laboratory of Grassland Agro-ecosystems, Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs, Engineering Research Center of Grassland Industry, Ministry of Education, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730000 China
| | - Lingjie Yang
- State Key Laboratory of Grassland Agro-ecosystems, Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs, Engineering Research Center of Grassland Industry, Ministry of Education, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730000 China
| | - Zuxin Zhang
- State Key Laboratory of Grassland Agro-ecosystems, Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs, Engineering Research Center of Grassland Industry, Ministry of Education, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730000 China
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Książkiewicz M, Yang H. Molecular Marker Resources Supporting the Australian Lupin Breeding Program. COMPENDIUM OF PLANT GENOMES 2020. [DOI: 10.1007/978-3-030-21270-4_6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Plewiński P, Książkiewicz M, Rychel-Bielska S, Rudy E, Wolko B. Candidate Domestication-Related Genes Revealed by Expression Quantitative Trait Loci Mapping of Narrow-Leafed Lupin ( Lupinus angustifolius L.). Int J Mol Sci 2019; 20:ijms20225670. [PMID: 31726789 PMCID: PMC6888189 DOI: 10.3390/ijms20225670] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2019] [Revised: 11/08/2019] [Accepted: 11/09/2019] [Indexed: 12/12/2022] Open
Abstract
The last century has witnessed rapid domestication of the narrow-leafed lupin (Lupinus angustifolius L.) as a grain legume crop, exploiting discovered alleles conferring low-alkaloid content (iucundus), vernalization independence (Ku and Julius), and reduced pod shattering (lentus and tardus). In this study, a L. angustifolius mapping population was subjected to massive analysis of cDNA ends (MACE). The MACE yielded 4185 single nucleotide polymorphism (SNP) markers for linkage map improvement and 30,595 transcriptomic profiles for expression quantitative trait loci (eQTL) mapping. The eQTL highlighted a high number of cis- and trans-regulated alkaloid biosynthesis genes with gene expression orchestrated by a regulatory agent localized at iucundus locus, supporting the concept that ETHYLENE RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 may control low-alkaloid phenotype. The analysis of Ku shed light on the vernalization response via FLOWERING LOCUS T and FD regulon in L. angustifolius, providing transcriptomic evidence for the contribution of several genes acting in C-repeat binding factor (CBF) cold responsiveness and in UDP-glycosyltransferases pathways. Research on lentus selected a DUF1218 domain protein as a candidate gene controlling the orientation of the sclerified endocarp and a homolog of DETOXIFICATION14 for purplish hue of young pods. An ABCG transporter was identified as a hypothetical contributor to sclerenchyma fortification underlying tardus phenotype.
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Brǿnnvik H, von Wettberg EJ. Bird Dispersal as a Pre-Adaptation for Domestication in Legumes: Insights for Neo-Domestication. FRONTIERS IN PLANT SCIENCE 2019; 10:1293. [PMID: 31681385 PMCID: PMC6803499 DOI: 10.3389/fpls.2019.01293] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Accepted: 09/18/2019] [Indexed: 06/10/2023]
Affiliation(s)
- Hester Brǿnnvik
- Department of Plant and Soil Science, University of Vermont, Burlington, VT, United States
| | - Eric J. von Wettberg
- Department of Plant and Soil Science, University of Vermont, Burlington, VT, United States
- Mathematical Biology and Bioinformatics Laboratory, Peter the Great St. Petersburg Polytechic University, Saint Petersburg, Russia
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