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Chung SSW, Cheung K, Arromrak BS, Li Z, Tse CM, Gaitán-Espitia JD. The interplay between host-specificity and habitat-filtering influences sea cucumber microbiota across an environmental gradient of pollution. ENVIRONMENTAL MICROBIOME 2024; 19:74. [PMID: 39397007 DOI: 10.1186/s40793-024-00620-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Accepted: 09/26/2024] [Indexed: 10/15/2024]
Abstract
Environmental gradients can influence morpho-physiological and life-history differences in natural populations. It is unclear, however, to what extent such gradients can also modulate phenotypic differences in other organismal characteristics such as the structure and function of host-associated microbial communities. In this work, we addressed this question by assessing intra-specific variation in the diversity, structure and function of environmental-associated (sediment and water) and animal-associated (skin and gut) microbiota along an environmental gradient of pollution in one of the most urbanized coastal areas in the world. Using the tropical sea cucumber Holothuria leucospilota, we tested the interplay between deterministic (e.g., environmental/host filtering) and stochastic (e.g., random microbial dispersal) processes underpinning host-microbiome interactions and microbial assemblages. Overall, our results indicate that microbial communities are complex and vary in structure and function between the environment and the animal hosts. However, these differences are modulated by the level of pollution across the gradient with marked clines in alpha and beta diversity. Yet, such clines and overall differences showed opposite directions when comparing environmental- and animal-associated microbial communities. In the sea cucumbers, intrinsic characteristics (e.g., body compartments, biochemistry composition, immune systems), may underpin the observed intra-individual differences in the associated microbiomes, and their divergence from the environmental source. Such regulation favours specific microbial functional pathways that may play an important role in the survival and physiology of the animal host, particularly in high polluted areas. These findings suggest that the interplay between both, environmental and host filtering underpins microbial community assembly in H. leucospilota along the pollution gradient in Hong Kong.
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Affiliation(s)
- Sheena Suet-Wah Chung
- The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China
- GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
| | - Khan Cheung
- The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China
| | - Bovern Suchart Arromrak
- The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China
| | - Zhenzhen Li
- The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China
- Jiangsu Key Laboratory of Marine Bioresources and Environment and Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, China
| | - Cham Man Tse
- The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China
| | - Juan Diego Gaitán-Espitia
- The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
- Institute for Climate and Carbon Neutrality, The University of Hong Kong, Hong Kong SAR, China.
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Wang S, Liu J, Liu Y, Tian C. Application of rhizobium inoculation in regulating heavy metals in legumes: A meta-analysis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:173923. [PMID: 38880144 DOI: 10.1016/j.scitotenv.2024.173923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 05/21/2024] [Accepted: 06/09/2024] [Indexed: 06/18/2024]
Abstract
Rhizobium inoculation has been widely applied to alleviate heavy metal (HM) stress in legumes grown in contaminated soils, but it has generated inconsistent results with regard to HM accumulation in plant tissues. Here, we conducted a meta-analysis to assess the performance of Rhizobium inoculation for regulating HM in legumes and reveal the general influencing factors and processes. The meta-analysis showed that Rhizobium inoculation in legumes primarily increased the total HM uptake by stimulating plant biomass growth rather than HM phytoavailability. Inoculation had no significant effect on the average shoot HM concentration (p > 0.05); however, it significantly increased root HM uptake by 61 % and root HM concentration by 7 % (p < 0.05), indicating safe agricultural production while facilitating HM phytostabilisation. Inoculation decreased shoot HM concentrations and increased root HM uptake in Vicia, Medicago and Glycine, whereas it increased shoot HM concentrations in Sulla, Cicer and Vigna. The effects of inoculation on shoot biomass were suppressed by nitrogen fertiliser and native microorganisms, and the effect on shoot HM concentration was enhanced by high soil pH, organic matter content, and phosphorous content. Inoculation-boosted shoot nutrient concentration was positively correlated with increased shoot biomass, whereas the changes in pH and organic matter content were insufficient to significantly affect accumulation outcomes. Nitrogen content changes in the soil were positively correlated with changes in root HM concentration and uptake, whereas nitrogen translocation changes in the tissues were positively correlated with changes in HM translocation. Phosphorus solubilisation could improve HM phytoavailability at the expense of slight biomass promotion. These results suggest that the diverse growth-promoting characteristics of Rhizobia influence the trade-off between biomass-HM phytoavailability and HM translocation, impacting HM accumulation outcomes. Our findings can assist in optimising the utilisation of legume-Rhizobium systems in HM-contaminated soils.
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Affiliation(s)
- Shiqi Wang
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences (CAS), Urumqi 830011, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jinbiao Liu
- Agricultural College, Heilongjiang Bayi Agricultural University, Daqing 163317, China
| | - Yalan Liu
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences (CAS), Urumqi 830011, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Changyan Tian
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences (CAS), Urumqi 830011, China.
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Resitano M, Tucci M, Mezzi A, Kaciulis S, Matturro B, D'Ugo E, Bertuccini L, Fazi S, Rossetti S, Aulenta F, Cruz Viggi C. Anaerobic treatment of groundwater co-contaminated by toluene and copper in a single chamber bioelectrochemical system. Bioelectrochemistry 2024; 158:108711. [PMID: 38626620 DOI: 10.1016/j.bioelechem.2024.108711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Revised: 04/10/2024] [Accepted: 04/12/2024] [Indexed: 04/18/2024]
Abstract
Addressing the simultaneous removal of multiple coexisting groundwater contaminants poses a significant challenge, primarily because of their different physicochemical properties. Indeed, different chemical compounds may necessitate establishing distinct, and sometimes conflicting, (bio)degradation and/or removal pathways. In this work, we investigated the concomitant anaerobic treatment of toluene and copper in a single-chamber bioelectrochemical cell with a potential difference of 1 V applied between the anode and the cathode. As a result, the electric current generated by the bioelectrocatalytic oxidation of toluene at the anode caused the abiotic reduction and precipitation of copper at the cathode, until the complete removal of both contaminants was achieved. Open circuit potential (OCP) experiments confirmed that the removal of copper and toluene was primarily associated with polarization. Analogously, abiotic experiments, at an applied potential of 1 V, confirmed that neither toluene was oxidized nor copper was reduced in the absence of microbial activity. At the end of each experiment, both electrodes were characterized by means of a comprehensive suite of chemical and microbiological analyses, evidencing a highly selected microbial community competent in the biodegradation of toluene in the anodic biofilm, and a uniform electrodeposition of spherical Cu2O nanoparticles over the cathode surface.
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Affiliation(s)
- Marco Resitano
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, (RM), Italy
| | - Matteo Tucci
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, (RM), Italy
| | - Alessio Mezzi
- Institute for the Study of Nanostructured Materials, National Research Council (CNR), 00010 Montelibretti, (RM), Italy
| | - Saulius Kaciulis
- Institute for the Study of Nanostructured Materials, National Research Council (CNR), 00010 Montelibretti, (RM), Italy
| | - Bruna Matturro
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, (RM), Italy; National Biodiversity Future Center, Palermo 90133, Italy
| | - Emilio D'Ugo
- Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy
| | | | - Stefano Fazi
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, (RM), Italy
| | - Simona Rossetti
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, (RM), Italy
| | - Federico Aulenta
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, (RM), Italy; National Biodiversity Future Center, Palermo 90133, Italy
| | - Carolina Cruz Viggi
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, (RM), Italy.
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Xu Y, Teng Y, Wang X, Wang H, Li Y, Ren W, Zhao L, Wei M, Luo Y. Biohydrogen utilization in legume-rhizobium symbiosis reveals a novel mechanism of accelerated tetrachlorobiphenyl transformation. BIORESOURCE TECHNOLOGY 2024; 404:130918. [PMID: 38823562 DOI: 10.1016/j.biortech.2024.130918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Revised: 05/23/2024] [Accepted: 05/30/2024] [Indexed: 06/03/2024]
Abstract
Symbiosis between Glycine max and Bradyrhizobium diazoefficiens were used as a model system to investigate whether biohydrogen utilization promotes the transformation of the tetrachlorobiphenyl PCB77. Both a H2 uptake-positive (Hup+) strain (wild type) and a Hup- strain (a hupL deletion mutant) were inoculated into soybean nodules. Compared with Hup- nodules, Hup+ nodules increased dechlorination significantly by 61.1 % and reduced the accumulation of PCB77 in nodules by 37.7 % (p < 0.05). After exposure to nickel, an enhancer of uptake hydrogenase, dechlorination increased significantly by 2.2-fold, and the accumulation of PCB77 in nodules decreased by 54.4 % (p < 0.05). Furthermore, the tetrachlorobiphenyl transformation in the soybean root nodules was mainly testified to be mediated by nitrate reductase (encoded by the gene NR) for tetrachlorobiphenyl dechlorination and biphenyl-2,3-diol 1,2-dioxygenase (bphC) for biphenyl degradation. This study demonstrates for the first time that biohydrogen utilization has a beneficial effect on tetrachlorobiphenyl biotransformation in a legume-rhizobium symbiosis.
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Affiliation(s)
- Yongfeng Xu
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ying Teng
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Xiaomi Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hongzhe Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yanning Li
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wenjie Ren
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ling Zhao
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Min Wei
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, College of Ecology, Lanzhou University, Lanzhou 730000, China
| | - Yongming Luo
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
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Szada-Borzyszkowska A, Krzyżak J, Rusinowski S, Sitko K, Pogrzeba M. Toxic effect of mercury on arbuscular mycorrhizal fungi colonisation and physiological status of three seed-based Miscanthus hybrids. J Trace Elem Med Biol 2024; 83:127391. [PMID: 38219458 DOI: 10.1016/j.jtemb.2024.127391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Revised: 01/04/2024] [Accepted: 01/08/2024] [Indexed: 01/16/2024]
Abstract
BACKGROUND Currently, mercury pollution is a widespread problem in the world. As mercury is difficult to remove from the environment, it has long-term negative effects on soil health and human life. One of the techniques to stabilise Hg is phytostabilisation, which can be supported by arbuscular mycorrhizal fungi (AMF). METHODS In a 4-month pot experiment, we investigated the suitability of three seed-based Miscanthus hybrids (GNT3, GNT34, GNT43) for growth on soils heavily polluted with mercury (6795.7 mg kg-1). During the experiment, the effects of high soil contamination with mercury on physiological parameters and colonisation of roots of seed-based Miscanthus hybrids by indigenous AMF from Hg-contaminated and uncontaminated soils were investigated. RESULTS A high pseudo-total Hg concentration (6795.75 mg kg-1) in soil was found. The Hg content in the aerial part of GNT34 grown on Hg-contaminated soil was 1.5 times and 3 times higher than GNT3 and GNT43, respectively. The Hg content in the roots of GNT3 on Hg-contaminated soil was 25% and 10% lower than that of GNT34 and GNT43, respectively. The N content in the aboveground part of GNT34 in the Hg variant was 13.5% lower compared to the control soil. The P and K content in the shoots of the Miscanthus hybrids was lower in the plants grown on Hg-contaminated soil. The P content in GNT43 in the Hg variant was 33% and 19% lower than in GNT34 and GNT3, respectively. The K content in GNT34 in the Hg variant was 24.7% and 31.4% higher than in GNT43 and GNT3, respectively. The dry weight of the shoots and roots as well as the shoot height of the Miscanthus hybrids were lower in Hg-contaminated soil. Lower values of AMF root colonisation parameters (F, M) were observed in the plants in the Hg variant. In the Hg variant, a lower photosynthetic rate and a decrease in chlorophyll content were observed in the leaves of the Miscanthus hybrids. In the Hg variant, an increase in the content of flavonols was observed. The strongest toxic effect of mercury on the light phase of photosynthesis was measured in GNT34. CONCLUSION Soils heavily contaminated with mercury negatively affected the physiological parameters of Miscanthus, as evidenced by a decrease in photosynthetic rate and biomass. The ability of indigenous AMF from Hg-contaminated soils to colonise the roots of seed-based Miscanthus hybrids was limited.
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Affiliation(s)
| | - Jacek Krzyżak
- Institute for Ecology of Industrial Areas, 6 Kossutha St., 40-844 Katowice, Poland
| | - Szymon Rusinowski
- Institute for Ecology of Industrial Areas, 6 Kossutha St., 40-844 Katowice, Poland
| | - Krzysztof Sitko
- Institute for Ecology of Industrial Areas, 6 Kossutha St., 40-844 Katowice, Poland; Plant Ecophysiology Team, University of Silesia in Katowice, 28 Jagiellońska St., 40-032 Katowice, Poland
| | - Marta Pogrzeba
- Institute for Ecology of Industrial Areas, 6 Kossutha St., 40-844 Katowice, Poland.
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Liu R, Hu B, Flemetakis E, Dannenmann M, Geilfus CM, Haensch R, Wang D, Rennenberg H. Antagonistic effect of mercury and excess nitrogen exposure reveals provenance-specific phytoremediation potential of black locust-rhizobia symbiosis. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 342:123050. [PMID: 38042473 DOI: 10.1016/j.envpol.2023.123050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Revised: 11/18/2023] [Accepted: 11/25/2023] [Indexed: 12/04/2023]
Abstract
Interaction of different environmental constrains pose severe threats to plants that cannot be predicted from individual stress exposure. In this context, mercury (Hg), as a typical toxic and hazardous heavy metal, has recently attracted particular attention. Nitrogen (N2)-fixing legumes can be used for phytoremediation of Hg accumulation, whereas N availability could greatly affect its N2-fixation efficiency. However, information on the physiological responses to combined Hg exposure and excess N supply of woody legume species is still lacking. Here, we investigated the interactive effects of rhizobia inoculation, Hg exposure (+Hg), and high N (+N) supply, individually and in combination (+N*Hg), on photosynthesis and biochemical traits in Robinia pseudoacacia L. seedlings of two provenances, one from Northeast (DB) and one from Northwest (GS) China. Our results showed antagonistic effects of combined + N*Hg exposure compared to the individual treatments that were provenance-specific. Compared to individual Hg exposure, combined + N*Hg stress significantly increased foliar photosynthesis (+50.6%) of inoculated DB seedlings and resulted in more negative (-137.4%) δ15N abundance in the roots. Furthermore, combined + N*Hg stress showed 47.7% increase in amino acid N content, 39.4% increase in NR activity, and 14.8% decrease in MDA content in roots of inoculated GS seedlings. Inoculation with rhizobia significantly promoted Hg uptake in both provenances, reduced MDA contents of leaves and roots, enhanced photosynthesis and maintained the nutrient balance of Robinia. Among the two Robinia provenances investigated, DB seedlings formed more nodules, had higher biomass and Hg accumulation than GS seedlings. For example, total Hg concentrations in leaves and roots and total biomass of inoculated DB seedlings were 1.3,1.9 and 3.4 times higher than in inoculated GS seedlings under combined + N*Hg stress, respectively. Therefore, the DB provenance is considered to possess a higher potential for phytoremediation of Hg contamination compared to the GS provenance in environments subjected to N deposition.
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Affiliation(s)
- Rui Liu
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, No. 2, Tiansheng Road, Beibei District, 400715, Chongqing, PR China; College of Resources and Environment, Academy of Agriculture Sciences, Southwest University, Chongqing, 400715, PR China
| | - Bin Hu
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, No. 2, Tiansheng Road, Beibei District, 400715, Chongqing, PR China.
| | - Emmanouil Flemetakis
- Laboratory of Molecular Biology, Department of Biotechnology, Agricultural University of Athens, 11855, Athens, Greece
| | - Michael Dannenmann
- Institute for Meteorology and Climate Research, Atmospheric Environmental Research (IMK-IFU), Karlsruhe Institute of Technology (KIT), Kreuzeckbahnstrasse 19, 82467, Garmisch-Partenkirchen, Germany
| | - Christoph-Martin Geilfus
- Department of Soil Science and Plant Nutrition, Hochschule Geisenheim University, 65366, Geisenheim, Germany
| | - Robert Haensch
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, No. 2, Tiansheng Road, Beibei District, 400715, Chongqing, PR China; Institute for Plant Biology, Technische Universität Braunschweig, Humboldtstraße 1, D-38106, Braunschweig, Germany
| | - Dingyong Wang
- College of Resources and Environment, Academy of Agriculture Sciences, Southwest University, Chongqing, 400715, PR China
| | - Heinz Rennenberg
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, No. 2, Tiansheng Road, Beibei District, 400715, Chongqing, PR China
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Wójcik M, Koper P, Żebracki K, Marczak M, Mazur A. Genomic and Metabolic Characterization of Plant Growth-Promoting Rhizobacteria Isolated from Nodules of Clovers Grown in Non-Farmed Soil. Int J Mol Sci 2023; 24:16679. [PMID: 38069003 PMCID: PMC10706249 DOI: 10.3390/ijms242316679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 11/20/2023] [Accepted: 11/22/2023] [Indexed: 12/18/2023] Open
Abstract
The rhizosphere microbiota, which includes plant growth-promoting rhizobacteria (PGPR), is essential for nutrient acquisition, protection against pathogens, and abiotic stress tolerance in plants. However, agricultural practices affect the composition and functions of microbiota, reducing their beneficial effects on plant growth and health. Among PGPR, rhizobia form mutually beneficial symbiosis with legumes. In this study, we characterized 16 clover nodule isolates from non-farmed soil to explore their plant growth-promoting (PGP) potential, hypothesizing that these bacteria may possess unique, unaltered PGP traits, compared to those affected by common agricultural practices. Biolog profiling revealed their versatile metabolic capabilities, enabling them to utilize a wide range of carbon and energy sources. All isolates were effective phosphate solubilizers, and individual strains exhibited 1-aminocyclopropane-1-carboxylate deaminase and metal ion chelation activities. Metabolically active strains showed improved performance in symbiotic interactions with plants. Comparative genomics revealed that the genomes of five nodule isolates contained a significantly enriched fraction of unique genes associated with quorum sensing and aromatic compound degradation. As the potential of PGPR in agriculture grows, we emphasize the importance of the molecular and metabolic characterization of PGP traits as a fundamental step towards their subsequent application in the field as an alternative to chemical fertilizers and supplements.
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Affiliation(s)
| | | | | | | | - Andrzej Mazur
- Department of Genetics and Microbiology, Institute of Biological Sciences, Maria Curie-Skłodowska University, Akademicka 19 St., 20-033 Lublin, Poland; (M.W.); (P.K.); (K.Ż.); (M.M.)
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8
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Naasko KI, Naylor D, Graham EB, Couvillion SP, Danczak R, Tolic N, Nicora C, Fransen S, Tao H, Hofmockel KS, Jansson JK. Influence of soil depth, irrigation, and plant genotype on the soil microbiome, metaphenome, and carbon chemistry. mBio 2023; 14:e0175823. [PMID: 37728606 PMCID: PMC10653930 DOI: 10.1128/mbio.01758-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 07/25/2023] [Indexed: 09/21/2023] Open
Abstract
IMPORTANCE Carbon is cycled through the air, plants, and belowground environment. Understanding soil carbon cycling in deep soil profiles will be important to mitigate climate change. Soil carbon cycling is impacted by water, plants, and soil microorganisms, in addition to soil mineralogy. Measuring biotic and abiotic soil properties provides a perspective of how soil microorganisms interact with the surrounding chemical environment. This study emphasizes the importance of considering biotic interactions with inorganic and oxidizable soil carbon in addition to total organic carbon in carbonate-containing soils for better informing soil carbon management decisions.
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Affiliation(s)
- Katherine I. Naasko
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
- Department of Crop and Soil Sciences, Washington State University, Pullman, Washington, USA
| | - Daniel Naylor
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Emily B. Graham
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Sneha P. Couvillion
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Robert Danczak
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Nikola Tolic
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Carrie Nicora
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
| | - Steven Fransen
- Department of Crop and Soil Sciences, Washington State University, Prosser, Washington, USA
| | - Haiying Tao
- Department of Plant Science and Landscape Architecture, University of Connecticut, Storrs, Connecticut, USA
| | - Kirsten S. Hofmockel
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
- Department of Agronomy, Iowa State University, Ames, Iowa, USA
| | - Janet K. Jansson
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
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9
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Bernadet O, Larasati A, van Veelen HPJ, Euverink GJW, Gagliano MC. Biological Oxygen-dosed Activated Carbon (BODAC) filters - A bioprocess for ultrapure water production removing organics, nutrients and micropollutants. JOURNAL OF HAZARDOUS MATERIALS 2023; 458:131882. [PMID: 37356180 DOI: 10.1016/j.jhazmat.2023.131882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Revised: 06/14/2023] [Accepted: 06/15/2023] [Indexed: 06/27/2023]
Abstract
Biological oxygen-dosed activated carbon (BODAC) filters in an Ultrapure water plant were demonstrated to have the potential to further treat secondary wastewater treatment effluent. The BODAC filters were operated for 11 years without carbon regeneration or replacement, while still functioning as pre-treatment step to reverse osmosis (RO) membranes by actively removing organic micropollutants (OMPs) and foulants. In this study, the removal of nutrients and 13 OMPs from secondary wastewater treatment effluent was investigated for 2 years and simultaneously, the granules' characterization and microbial community analysis were conducted to gain insights behind the stable long-term operation of the BODAC filters. The results showed that the BODAC granules' surface area was reduced by ∼70 % of what is in virgin carbon granules and covered by biofilm and inorganic depositions. The BODAC filters reduced the concentration of soluble organics, mainly proteins, performed as an effective nitrification system, and almost completely removed manganese. During the 2 years of observation, the filters consistently removed some OMPs such as hydrochlorothiazide, metoprolol, sotalol, and trimethoprim by at least 70 %. Finally, through microbial community analysis, we found that nitrifying and manganese-oxidizing bacteria were detected in high relative abundance on BODAC granules, supporting BODAC performance in removing OMPs and manganese as well as converting nitrogenous species in the water.
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Affiliation(s)
- Olga Bernadet
- Wetsus, Center of European Excellence in Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, the Netherlands; Engineering and Technology Institute Groningen (ENTEG), University of Groningen, Nijenborgh 4, Groningen, the Netherlands
| | - Amanda Larasati
- Wetsus, Center of European Excellence in Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, the Netherlands
| | - H Pieter J van Veelen
- Wetsus, Center of European Excellence in Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, the Netherlands
| | - Gert Jan Willem Euverink
- Engineering and Technology Institute Groningen (ENTEG), University of Groningen, Nijenborgh 4, Groningen, the Netherlands.
| | - Maria Cristina Gagliano
- Wetsus, Center of European Excellence in Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, the Netherlands
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Xu Y, Teng Y, Wang X, Ren W, Zhao L, Luo Y, Christie P, Greening C. Endogenous biohydrogen from a rhizobium-legume association drives microbial biodegradation of polychlorinated biphenyl in contaminated soil. ENVIRONMENT INTERNATIONAL 2023; 176:107962. [PMID: 37196568 DOI: 10.1016/j.envint.2023.107962] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2023] [Revised: 04/11/2023] [Accepted: 05/04/2023] [Indexed: 05/19/2023]
Abstract
Endogenous hydrogen (H2) is produced through rhizobium-legume associations in terrestrial ecosystems worldwide through dinitrogen fixation. In turn, this gas may alter rhizosphere microbial community structure and modulate biogeochemical cycles. However, very little is understood about the role that this H2 leaking to the rhizosphere plays in shaping the persistent organic pollutants degrading microbes in contaminated soils. Here, we combined DNA-stable isotope probing (DNA-SIP) with metagenomics to explore how endogenous H2 from the symbiotic rhizobium-alfalfa association drives the microbial biodegradation of tetrachlorobiphenyl PCB 77 in a contaminated soil. The results showed that PCB77 biodegradation efficiency increased significantly in soils treated with endogenous H2. Based on metagenomes of 13C-enriched DNA fractions, endogenous H2 selected bacteria harboring PCB degradation genes. Functional gene annotation allowed the reconstruction of several complete pathways for PCB catabolism, with different taxa conducting successive metabolic steps of PCB metabolism. The enrichment through endogenous H2 of hydrogenotrophic Pseudomonas and Magnetospirillum encoding biphenyl oxidation genes drove PCB biodegradation. This study proves that endogenous H2 is a significant energy source for active PCB-degrading communities and suggests that elevated H2 can influence the microbial ecology and biogeochemistry of the legume rhizosphere.
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Affiliation(s)
- Yongfeng Xu
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Ying Teng
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
| | - Xiaomi Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Wenjie Ren
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Ling Zhao
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Yongming Luo
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Peter Christie
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Chris Greening
- Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia
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11
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Huang YH, Yang YJ, Wu X, Zhu CL, Lü H, Zhao HM, Xiang L, Li H, Mo CH, Li YW, Cai QY, Li QX. Adaptation of bacterial community in maize rhizosphere for enhancing dissipation of phthalic acid esters in agricultural soil. JOURNAL OF HAZARDOUS MATERIALS 2023; 444:130292. [PMID: 36399821 DOI: 10.1016/j.jhazmat.2022.130292] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2022] [Revised: 10/19/2022] [Accepted: 10/28/2022] [Indexed: 06/16/2023]
Abstract
Rhizospheric degradation is a green and in situ strategy to accelerate dissipation of organic pollutants in soils. However, the mechanism on microbial degradation of phthalic acid esters (PAEs) in rhizosphere is still unclear. Here, the bacterial community and function genes in bulk and rhizospheric soils of maize (Zea mays L.) exposed to gradient concentrations of di-(2-ethylhexyl) phthalate (DEHP) were analyzed with 16 S rRNA, metagenomic sequencing and quantitative PCR (qPCR). Maize rhizosphere significantly increased the dissipation of DEHP by 4.02-11.5% in comparison with bulk soils. Bacterial community in rhizosphere exhibited more intensive response and shaped its beneficial structure and functions to DEHP stress than that in bulk soils. Both rhizospheric and pollution effects enriched more PAE-degrading bacteria (e.g., Bacillus and Rhizobium) and function genes in rhizosphere than in bulk soil, which played important roles in degradation of PAEs in rhizosphere. The PAE-degrading bacteria (including genera Sphingomonas, Sphingopyxis and Lysobacter) identified as keystone species participated in DEHP biodegradation. Identification of PAE intermediates and metagenomic reconstruction of PAE degradation pathways demonstrated that PAE-degrading bacteria degraded PAEs through cooperation with PAE-degrading and non-PAE-degrading bacteria. This study provides a comprehensive knowledge for the microbial mechanism on the superior dissipation of PAEs in rhizosphere.
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Affiliation(s)
- Yu-Hong Huang
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Yu-Jie Yang
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Xiaolian Wu
- School of Environmental and Chemical Engineering, Foshan University, Foshan, Guangdong 528000, China
| | - Cui-Lan Zhu
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Huixiong Lü
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Hai-Ming Zhao
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Lei Xiang
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Hui Li
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Ce-Hui Mo
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Yan-Wen Li
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Quan-Ying Cai
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China.
| | - Qing X Li
- Department of Molecular Bioscience and Bioengineering, University of Hawaii at Manoa, Honolulu, HI 96822, USA
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12
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Klonowska A, Ardley J, Moulin L, Zandberg J, Patrel D, Gollagher M, Marinova D, Reddy TBK, Varghese N, Huntemann M, Woyke T, Seshadri R, Ivanova N, Kyrpides N, Reeve W. Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018. Front Microbiol 2023; 14:1082107. [PMID: 36925474 PMCID: PMC10011098 DOI: 10.3389/fmicb.2023.1082107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Accepted: 01/24/2023] [Indexed: 03/08/2023] Open
Abstract
Integrated virus genomes (prophages) are commonly found in sequenced bacterial genomes but have rarely been described in detail for rhizobial genomes. Cupriavidus taiwanensis STM 6018 is a rhizobial Betaproteobacteria strain that was isolated in 2006 from a root nodule of a Mimosa pudica host in French Guiana, South America. Here we describe features of the genome of STM 6018, focusing on the characterization of two different types of prophages that have been identified in its genome. The draft genome of STM 6018 is 6,553,639 bp, and consists of 80 scaffolds, containing 5,864 protein-coding genes and 61 RNA genes. STM 6018 contains all the nodulation and nitrogen fixation gene clusters common to symbiotic Cupriavidus species; sharing >99.97% bp identity homology to the nod/nif/noeM gene clusters from C. taiwanensis LMG19424T and "Cupriavidus neocalidonicus" STM 6070. The STM 6018 genome contains the genomes of two prophages: one complete Mu-like capsular phage and one filamentous phage, which integrates into a putative dif site. This is the first characterization of a filamentous phage found within the genome of a rhizobial strain. Further examination of sequenced rhizobial genomes identified filamentous prophage sequences in several Beta-rhizobial strains but not in any Alphaproteobacterial rhizobia.
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Affiliation(s)
- Agnieszka Klonowska
- Université de Montpellier, IRD, CIRAD, INRAE, Institut AgroPHIM Plant Health Institute, Montpellier, France
| | - Julie Ardley
- Centre for Crop and Food Innovation, Food Futures Institute, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA, Australia
| | - Lionel Moulin
- Université de Montpellier, IRD, CIRAD, INRAE, Institut AgroPHIM Plant Health Institute, Montpellier, France
| | - Jaco Zandberg
- Centre for Crop and Food Innovation, Food Futures Institute, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA, Australia
| | - Delphine Patrel
- Université de Montpellier, IRD, CIRAD, INRAE, Institut AgroPHIM Plant Health Institute, Montpellier, France
| | - Margaret Gollagher
- Curtin University Sustainability Policy Institute, Curtin University, Bentley, WA, Australia
| | - Dora Marinova
- Curtin University Sustainability Policy Institute, Curtin University, Bentley, WA, Australia
| | - T B K Reddy
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Neha Varghese
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Marcel Huntemann
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Tanja Woyke
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Rekha Seshadri
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Natalia Ivanova
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Nikos Kyrpides
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Wayne Reeve
- Centre for Crop and Food Innovation, Food Futures Institute, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA, Australia
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13
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Tufail MA, Iltaf J, Zaheer T, Tariq L, Amir MB, Fatima R, Asbat A, Kabeer T, Fahad M, Naeem H, Shoukat U, Noor H, Awais M, Umar W, Ayyub M. Recent advances in bioremediation of heavy metals and persistent organic pollutants: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 850:157961. [PMID: 35963399 DOI: 10.1016/j.scitotenv.2022.157961] [Citation(s) in RCA: 30] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Revised: 08/02/2022] [Accepted: 08/06/2022] [Indexed: 06/15/2023]
Abstract
Heavy metals and persistent organic pollutants are causing detrimental effects on the environment. The seepage of heavy metals through untreated industrial waste destroys the crops and lands. Moreover, incineration and combustion of several products are responsible for primary and secondary emissions of pollutants. This review has gathered the remediation strategies, current bioremediation technologies, and their primary use in both in situ and ex situ methods, followed by a detailed explanation for bioremediation over other techniques. However, an amalgam of bioremediation techniques and nanotechnology could be a breakthrough in cleaning the environment by degrading heavy metals and persistant organic pollutants.
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Affiliation(s)
| | - Jawaria Iltaf
- Institute of Chemistry, University of Sargodha, 40100, Pakistan
| | - Tahreem Zaheer
- Department of Biological Physics, Eötvös Loránd University, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary
| | - Leeza Tariq
- Centre of Excellence in Molecular Biology, University of the Punjab, Lahore 53700, Pakistan
| | - Muhammad Bilal Amir
- Key Laboratory of Insect Ecology and Molecular Biology, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao 266109, China
| | - Rida Fatima
- School of Science, Department of Chemistry, University of Management and Technology, Lahore, Pakistan
| | - Ayesha Asbat
- Department of Pharmacy, The University of Lahore, Lahore, Pakistan
| | - Tahira Kabeer
- Center of Agriculture Biochemistry and Biotechnology CABB, University of Agriculture, Faisalabad, Pakistan
| | - Muhammad Fahad
- Department of Plant Breeding and Genetics, Bahauddin Zakariya University, Multan, Pakistan
| | - Hamna Naeem
- Department of Environmental Sciences, Fatima Jinnah Women University, The Mall, 46000 Rawalpindi, Pakistan
| | - Usama Shoukat
- Integrated Genomics Cellular Development Biology Lab, Department of Entomology, University of Agriculture, Faisalabad, Pakistan
| | - Hazrat Noor
- Department of Microbiology, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad 45320, Pakistan
| | - Muhammad Awais
- International Center for Chemical and Biological Sciences, University of Karachi, Karachi 75270, Pakistan
| | - Wajid Umar
- Institute of Environmental Science, Hungarian University of Agriculture and Life Sciences, Gödöllő 2100, Hungary
| | - Muhaimen Ayyub
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Pakistan
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14
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Rana R, Ferdous J, Rahman M, Rahman F, Huq A, Ali Y, Huda N, Mukhles MB, Rafi MH. Biosynthesis and chemical composition of nanomaterials in agricultural soil bioremediation: a review. ENVIRONMENTAL MONITORING AND ASSESSMENT 2022; 194:730. [PMID: 36066693 DOI: 10.1007/s10661-022-10315-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 07/25/2022] [Indexed: 06/15/2023]
Abstract
Nanomaterials (NMs) are currently being used in agricultural soils as part of a new bioremediation (BR) process. In this study, we reviewed the biosynthesis of NMs, as well as their chemical composition and prospective strategies for helpful and sustainable agricultural soil bioremediation (BR). Different types of NMs, such as nanoparticles, nanocomposites, nanocrystals, nano-powders, and nanotubes, are used in agricultural soil reclamation, and they reflect the toxicity of NMs to microorganisms. Plants (Sargassum muticum, Dodonaea viscose, Aloe Vera, Rosemarinus officinalis, Azadirachta indica, Green tea, and so on) and microorganisms (Escherichia coli, Shewanella oneidensis, Pleurotus sp., Klebsiella oxytoca, Aspergillus clavatus, and so on) are the primary sources for the biosynthesis of NMs. By using the BR process, microorganisms, such as bacteria and plants, can immobilize metals and change both inorganic and organic contaminants in the soil. Combining NMs with bioremediation techniques for agricultural soil remediation will be a valuable long-term solution.
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Affiliation(s)
- Rasel Rana
- Department of Biotechnology and Genetic Engineering, Faculty of Biological Science, Islamic University, Kushtia, 7003, Bangladesh
| | - Jannatul Ferdous
- Department of Biotechnology and Genetic Engineering, Faculty of Biological Science, Islamic University, Kushtia, 7003, Bangladesh
| | - Mizanur Rahman
- Department of Biotechnology and Genetic Engineering, Faculty of Biological Science, Islamic University, Kushtia, 7003, Bangladesh.
| | - Fahida Rahman
- Department of Biotechnology and Genetic Engineering, Faculty of Biological Science, Islamic University, Kushtia, 7003, Bangladesh
| | - Amdadul Huq
- Department of Food and Nutrition, College of Biotechnology and Natural Resources, Chung-Ang University, Gyeonggi-do, Anseong-si, 17546, Republic of Korea
| | - Yousof Ali
- Department of Physiology and Pharmacology, Hotchkiss Brain Institute, and Alberta Children's Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, T2N 4N1, Canada
| | - Nazmul Huda
- Department of Biotechnology and Genetic Engineering, Faculty of Biological Science, Islamic University, Kushtia, 7003, Bangladesh
| | - Muntaha Binte Mukhles
- Department of Biotechnology and Genetic Engineering, Faculty of Biological Science, Islamic University, Kushtia, 7003, Bangladesh
| | - Meherab Hossain Rafi
- Department of Biotechnology and Genetic Engineering, Faculty of Biological Science, Islamic University, Kushtia, 7003, Bangladesh
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15
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Utilization of Legume-Nodule Bacterial Symbiosis in Phytoremediation of Heavy Metal-Contaminated Soils. BIOLOGY 2022; 11:biology11050676. [PMID: 35625404 PMCID: PMC9138774 DOI: 10.3390/biology11050676] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/10/2022] [Revised: 04/24/2022] [Accepted: 04/25/2022] [Indexed: 02/04/2023]
Abstract
Simple Summary The legume–rhizobium symbiosis is one of the most beneficial interactions with high importance in agriculture, as it delivers nitrogen to plants and soil, thereby enhancing plant growth. Currently, this symbiosis is increasingly being exploited in phytoremediation of metal contaminated soil to improve soil fertility and simultaneously metal extraction or stabilization. Rhizobia increase phytoremediation directly by nitrogen fixation, protection of plants from pathogens, and production of plant growth-promoting factors and phytohormones. Abstract With the increasing industrial activity of the growing human population, the accumulation of various contaminants in soil, including heavy metals, has increased rapidly. Heavy metals as non-biodegradable elements persist in the soil environment and may pollute crop plants, further accumulating in the human body causing serious conditions. Hence, phytoremediation of land contamination as an environmental restoration technology is desirable for both human health and broad-sense ecology. Legumes (Fabaceae), which play a special role in nitrogen cycling, are dominant plants in contaminated areas. Therefore, the use of legumes and associated nitrogen-fixing rhizobia to reduce the concentrations or toxic effects of contaminants in the soil is environmentally friendly and becomes a promising strategy for phytoremediation and phytostabilization. Rhizobia, which have such plant growth-promoting (PGP) features as phosphorus solubilization, phytohormone synthesis, siderophore release, production of beneficial compounds for plants, and most of all nitrogen fixation, may promote legume growth while diminishing metal toxicity. The aim of the present review is to provide a comprehensive description of the main effects of metal contaminants in nitrogen-fixing leguminous plants and the benefits of using the legume–rhizobium symbiosis with both wild-type and genetically modified plants and bacteria to enhance an efficient recovery of contaminated lands.
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16
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Kadam SK, Tamboli AS, Chandanshive VV, Govindwar SP, Choo YS, Pak JH. Construction and implementation of floating wetpark as effective constructed wetland for industrial textile wastewater treatment. JOURNAL OF HAZARDOUS MATERIALS 2022; 424:127710. [PMID: 34815126 DOI: 10.1016/j.jhazmat.2021.127710] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Revised: 11/01/2021] [Accepted: 11/02/2021] [Indexed: 06/13/2023]
Abstract
Fimbristylis dichotoma, Ipomoea aquatica, Pluchea tomentosa and their co-plantation (consortium FIP) autonomously degrade Orange 3R. Consortium FIP showed 84% removal of Orange 3R within 48 h, which is a higher dye elimination rate than individual plant systems. Oxidoreductase enzymes like tyrosinase (76%), varatryal alcohol oxidase (85%), lignin peroxidase (150%), riboflavin reductase (151%), laccase (171%), NADH-DCIP reductase (11%) and azo reductase (241%) were expressed in consortia FIP during Orange 3R degradation. UV-vis spectroscopy, enzyme activities, HPTLC, FTIR and GC-MS confirmed mineralization of Orange 3R into its metabolites. Microscopic investigation of root tissue revealed the harsh effect of dye on root tissues. Toxicity assessment on the HepG2 cell line demonstrated the toxic nature of Orange 3R, which gets reduced after phyto-treatment with consortia FIP. Floating wetpark of consortia FIP was found more efficient for the treatment of industrial textile waste and accomplished 87%, 86%, 75%, 49% and 46% removal of COD, BOD, color, TSS and TDS of effluent.
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Affiliation(s)
- Suhas K Kadam
- Research Institute for Dok-do and Ulleung-do Island, Department of Biology, School of Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea.
| | - Asif S Tamboli
- Research Institute for Dok-do and Ulleung-do Island, Department of Biology, School of Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | | | | | - Yeon-Sik Choo
- Research Institute for Dok-do and Ulleung-do Island, Department of Biology, School of Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Jae Hong Pak
- Research Institute for Dok-do and Ulleung-do Island, Department of Biology, School of Life Sciences, Kyungpook National University, Daegu 41566, Republic of Korea; Department of Biology, School of Life Sciences, Kyungpook National University, 80, Daehak-ro, Buk-gu, Daegu 41566, Republic of Korea.
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17
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Basu S, Clark RE, Blundell R, Casteel CL, Charlton AM, Crowder DW. Reciprocal plant‐mediated antagonism between a legume plant virus and soil rhizobia. Funct Ecol 2021. [DOI: 10.1111/1365-2435.13828] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Saumik Basu
- Department of Entomology Washington State University Pullman WA USA
| | - Robert E. Clark
- Department of Entomology Washington State University Pullman WA USA
| | - Robert Blundell
- Department of Plant Pathology University of California Davis Davis CA USA
- School of Integrative Plant Science, Plant Pathology and Plant‐Microbe Biology Section Cornell University Ithaca NY USA
| | - Clare L. Casteel
- Department of Plant Pathology University of California Davis Davis CA USA
- School of Integrative Plant Science, Plant Pathology and Plant‐Microbe Biology Section Cornell University Ithaca NY USA
| | | | - David W. Crowder
- Department of Entomology Washington State University Pullman WA USA
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18
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Bang-Andreasen T, Peltre M, Ellegaard-Jensen L, Hansen LH, Ingerslev M, Rønn R, Jacobsen CS, Kjøller R. Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil. Sci Rep 2021; 11:742. [PMID: 33436951 PMCID: PMC7804945 DOI: 10.1038/s41598-020-80732-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Accepted: 12/21/2020] [Indexed: 01/29/2023] Open
Abstract
Wood ash is alkaline and contains base-cations. Application of wood ash to forests therefore counteracts soil acidification and recycle nutrients removed during harvest. Wood ash application to soil leads to strong vertical gradients in physicochemical parameters. Consequently, we designed an experimental system where small-scale vertical changes in soil properties and prokaryotic community structure could be followed after wood ash application. A mixed fly and bottom ash was applied in dosages of 3 and 9 t ha-1 to the surface of soil mesocosms, simulating a typical coniferous podzol. Soil pH, exchangeable cations and 16S prokaryotic community was subsequently assessed at small depth intervals to 5 cm depth at regular intervals for one year. Wood ash significantly changed the prokaryotic community in the top of the soil column. Also, the largest increases in pH and concentrations of exchangeable cations was found here. The relative abundance of prokaryotic groups directionally changed, suggesting that wood ash favors copiotrophic prokaryotes at the expense of oligotrophic and acidophilic taxa. The effect of wood ash were negligible both in terms of pH- and biological changes in lower soil layers. Consequently, by micro-vertical profiling we showed that wood ash causes a steep gradient of abiotic factors driving biotic changes but only in the top-most soil layers.
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Affiliation(s)
- Toke Bang-Andreasen
- grid.7048.b0000 0001 1956 2722Department of Environmental Science, Aarhus University, Roskilde, Denmark ,grid.5254.60000 0001 0674 042XDepartment of Biology, University of Copenhagen, Copenhagen Ø, Denmark
| | - Mette Peltre
- grid.5254.60000 0001 0674 042XDepartment of Geosciences and Natural Resource Management, University of Copenhagen, Frederiksberg C, Denmark
| | - Lea Ellegaard-Jensen
- grid.7048.b0000 0001 1956 2722Department of Environmental Science, Aarhus University, Roskilde, Denmark
| | - Lars Hestbjerg Hansen
- grid.7048.b0000 0001 1956 2722Department of Environmental Science, Aarhus University, Roskilde, Denmark ,grid.5254.60000 0001 0674 042XDepartment of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Denmark
| | - Morten Ingerslev
- grid.5254.60000 0001 0674 042XDepartment of Geosciences and Natural Resource Management, University of Copenhagen, Frederiksberg C, Denmark
| | - Regin Rønn
- grid.5254.60000 0001 0674 042XDepartment of Biology, University of Copenhagen, Copenhagen Ø, Denmark
| | - Carsten Suhr Jacobsen
- grid.7048.b0000 0001 1956 2722Department of Environmental Science, Aarhus University, Roskilde, Denmark
| | - Rasmus Kjøller
- grid.5254.60000 0001 0674 042XDepartment of Biology, University of Copenhagen, Copenhagen Ø, Denmark
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19
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Assessment of Genetic Diversity and Symbiotic Efficiency of Selected Rhizobia Strains Nodulating Lentil ( Lens culinaris Medik.). PLANTS 2020; 10:plants10010015. [PMID: 33374129 PMCID: PMC7823456 DOI: 10.3390/plants10010015] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Revised: 12/13/2020] [Accepted: 12/14/2020] [Indexed: 11/30/2022]
Abstract
A total of 14 Rhizobium strains were isolated from lentil accessions grown at the ICARDA experimental research station at Marchouch in Morocco and used for molecular characterization and symbiotic efficiency assessment. Individual phylogenetic analysis using the 16S rRNA gene, house-keeping genes rpoB, recA, and gyrB, and symbiotic genes nodD and nodA along with Multilocus Sequence Analysis (MLSA) of the concatenated genes (16S rRNA-rpoB-recA-gyrB) was carried out for the identification and clustering of the isolates. The symbiotic efficiency of the strains was assessed on three Moroccan lentil cultivars (Bakria, Chakkouf, and Zaria) based on the number of nodules, plant height, plant dry weight, and total nitrogen content in leaves. The results showed that the individual phylogenetic analysis clustered all the strains into Rhizobium laguerreae and Rhizobium leguminosarum with sequence similarity ranging from 94 to 100%, except one strain which clustered with Mesorhizobium huakuii with sequence similarity of 100%. The MLSA of the concatenated genes and the related percentages of similarity clustered these strains into two groups of Rhizobium species, with one strain as a new genospecies when applying the threshold of 96%. For symbiotic efficiency, the Bakria variety showed the best association with 10 strains compared to its non-inoculated control (p-value ≤ 0.05), followed by Chakkouf and Zaria. The present study concluded that the genetic diversity and the symbiotic efficiency of Rhizobium strains appeared to be mainly under the control of the lentil genotypes.
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Xu Y, Teng Y, Wang X, Li R, Christie P. Exploring bacterial community structure and function associated with polychlorinated biphenyl biodegradation in two hydrogen-amended soils. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 745:140839. [PMID: 32726695 DOI: 10.1016/j.scitotenv.2020.140839] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Revised: 07/07/2020] [Accepted: 07/07/2020] [Indexed: 06/11/2023]
Abstract
Hydrogen (H2) is a universal energy source supplying survival energy for numerous microbial functions. Diffusive fluxes of H2 released by rhizobacterial symbiont nodules in which H2 is an obligate by-product of dinitrogen fixation may act as an additional energy input shaping microbial community structure and function in soils. However, the effects of H2 at the soil-nodule interface on soil contaminant degradation processes are poorly understood. Here, we mimicked the hydrogen conditions present at the soil-nodule interface (10,000 ppmv) to test the impact of elevated H2 concentrations on soil microbial removal of 3, 3', 4, 4'-tetrachlorobiphenyl (PCB77) and examined the associated bacterial communities and their functions by conducting a microcosm experiment using two different soil types at three PCB contamination levels (0.5, 1.0 and 5.0 mg kg-1). After incubation for 84 days the PCB77 removal rates in the elevated H2 treatments in the Paddy soil were significantly promoted (by 4.88 to 6.41%) compared with the control (0.5 ppmv H2) but no significant effect was observed in a Fluvo-aquic soil. This is consistent with changes in the abundance of functional genes for PCB-degraders as shown by quantitative real-time PCR (Q-PCR) and phylogenetic investigation of bacterial communities by reconstruction of unobserved states (PICRUSt). 16S amplicon sequencing was conducted to explore bacterial community structure and correlate the genera to potential PCB degradation. The abundance of a total of four potentially PCB-degrading bacterial genera (Bacillus, Streptomyces, Ramlibacter and Paenibacillus) increased with increasing H2 level. In addition, the abundance of hydrogenase in the elevated H2 treatments was higher than in the control across different contamination levels in both soil types. Thus, elevated H2 stimulated soil PCB degradation with direct effects (aerobic PCB-degrading bacteria directly utilized H2 as an energy source for growth and thus enhanced PCB degradation efficiency) and indirect effects (aerobic PCB-degrading bacteria acted synergistically with other hydrogenotrophs to enhance PCB degradation efficiency by exchange of substances and energy). These results help to further understand the role of elevated hydrogen amendment in the PCB biodegradation process and provide evidence that H2 supports metabolic and energetic flexibility in microorganisms supplying a range of ecosystem services.
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Affiliation(s)
- Yongfeng Xu
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of the Chinese Academy of Sciences, Beijing, China
| | - Ying Teng
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
| | - Xiaomi Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Ran Li
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of the Chinese Academy of Sciences, Beijing, China
| | - Peter Christie
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
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Cyriaque V, Géron A, Billon G, Nesme J, Werner J, Gillan DC, Sørensen SJ, Wattiez R. Metal-induced bacterial interactions promote diversity in river-sediment microbiomes. FEMS Microbiol Ecol 2020; 96:5826176. [PMID: 32343356 DOI: 10.1093/femsec/fiaa076] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Accepted: 04/27/2020] [Indexed: 01/05/2023] Open
Abstract
Anthropogenic metal contamination results in long-term environmental selective pressure with unclear impacts on bacterial communities, which comprise key players in ecosystem functioning. Since metal contamination poses serious toxicity and bioaccumulation issues, assessing their impact on environmental microbiomes is important to respond to current environmental and health issues. Despite elevated metal concentrations, the river sedimentary microbiome near the MetalEurop foundry (France) shows unexpected higher diversity compared with the upstream control site. In this work, a follow-up of the microbial community assembly during a metal contamination event was performed in microcosms with periodic renewal of the supernatant river water. Sediments of the control site were gradually exposed to a mixture of metals (Cd, Cu, Pb and Zn) in order to reach similar concentrations to MetalEurop sediments. Illumina sequencing of 16S rRNA gene amplicons was performed. Metal-resistant genes, czcA and pbrA, as well as IncP plasmid content, were assessed by quantitative PCR. The outcomes of this study support previous in situ observations showing that metals act as community assembly managers, increasing diversity. This work revealed progressive adaptation of the sediment microbiome through the selection of different metal-resistant mechanisms and cross-species interactions involving public good-providing bacteria co-occurring with the rest of the community.
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Affiliation(s)
- Valentine Cyriaque
- Proteomics and Microbiology Laboratory, Research Institute for Biosciences, UMONS, 20 Place du Parc, 7000 Mons, Belgium
| | - Augustin Géron
- Proteomics and Microbiology Laboratory, Research Institute for Biosciences, UMONS, 20 Place du Parc, 7000 Mons, Belgium.,Division of Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling,FK9 4LA, UK
| | - Gabriel Billon
- Univ. Lille, CNRS, UMR 8516 - LASIRE - LAboratoire de Spectroscopie pour les Interactions, la Réactivité et l'Environnement, F-59000 Lille, France
| | - Joseph Nesme
- Section of Microbiology, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark
| | - Johannes Werner
- Department of Biological Oceanography, Leibniz Institute of Baltic Sea Research, D-18119 Rostock, Germany
| | - David C Gillan
- Proteomics and Microbiology Laboratory, Research Institute for Biosciences, UMONS, 20 Place du Parc, 7000 Mons, Belgium
| | - Søren J Sørensen
- Section of Microbiology, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark
| | - Ruddy Wattiez
- Proteomics and Microbiology Laboratory, Research Institute for Biosciences, UMONS, 20 Place du Parc, 7000 Mons, Belgium
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22
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Bang-Andreasen T, Anwar MZ, Lanzén A, Kjøller R, Rønn R, Ekelund F, Jacobsen CS. Total RNA sequencing reveals multilevel microbial community changes and functional responses to wood ash application in agricultural and forest soil. FEMS Microbiol Ecol 2020; 96:5721238. [PMID: 32009159 PMCID: PMC7028008 DOI: 10.1093/femsec/fiaa016] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Accepted: 01/31/2020] [Indexed: 11/15/2022] Open
Abstract
Recycling of wood ash from energy production may counteract soil acidification and return essential nutrients to soils. However, wood ash amendment affects soil physicochemical parameters that control composition and functional expression of the soil microbial community. Here, we applied total RNA sequencing to simultaneously assess the impact of wood ash amendment on the active soil microbial communities and the expression of functional genes from all microbial taxa. Wood ash significantly affected the taxonomic (rRNA) as well as functional (mRNA) profiles of both agricultural and forest soil. Increase in pH, electrical conductivity, dissolved organic carbon and phosphate were the most important physicochemical drivers for the observed changes. Wood ash amendment increased the relative abundance of the copiotrophic groups Chitinonophagaceae (Bacteroidetes) and Rhizobiales (Alphaproteobacteria) and resulted in higher expression of genes involved in metabolism and cell growth. Finally, total RNA sequencing allowed us to show that some groups of bacterial feeding protozoa increased concomitantly to the enhanced bacterial growth, which shows their pivotal role in the regulation of bacterial abundance in soil.
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Affiliation(s)
- Toke Bang-Andreasen
- Department of Environmental Science, Aarhus University, RISØ Campus, Roskilde, 4000, Denmark.,Department of Biology, University of Copenhagen, DK-2100, Copenhagen, Denmark
| | - Muhammad Zohaib Anwar
- Department of Environmental Science, Aarhus University, RISØ Campus, Roskilde, 4000, Denmark
| | - Anders Lanzén
- Department of Conservation of Natural Resources, NEIKER-Tecnalia, Bizkaia Technology Park, E-48160, Derio, Spain.,AZTI-Tecnalia, Herrera Kaia, E-20110, Pasaia, Spain.,Ikerbasque, Basque Foundation for Science, E-48013, Bilbao, Spain
| | - Rasmus Kjøller
- Department of Biology, University of Copenhagen, DK-2100, Copenhagen, Denmark
| | - Regin Rønn
- Department of Biology, University of Copenhagen, DK-2100, Copenhagen, Denmark.,Arctic Station, University of Copenhagen, 3953, Qeqertarsuaq, Greenland
| | - Flemming Ekelund
- Department of Biology, University of Copenhagen, DK-2100, Copenhagen, Denmark
| | - Carsten Suhr Jacobsen
- Department of Environmental Science, Aarhus University, RISØ Campus, Roskilde, 4000, Denmark
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Salam LB, Obayori OS. Remarkable shift in structural and functional properties of an animal charcoal-polluted soil accentuated by inorganic nutrient amendment. J Genet Eng Biotechnol 2020; 18:70. [PMID: 33175233 PMCID: PMC7658278 DOI: 10.1186/s43141-020-00089-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Accepted: 11/02/2020] [Indexed: 12/02/2022]
Abstract
Background Soils polluted with animal charcoal from skin and hide cottage industries harbour extremely toxic and carcinogenic hydrocarbon pollutants and thus require a bio-based eco-friendly strategy for their depuration. The effects of carbon-free mineral medium (CFMM) amendment on hydrocarbon degradation and microbial community structure and function in an animal charcoal-polluted soil was monitored for 6 weeks in field moist microcosms consisting of CFMM-treated soil (FN4) and an untreated control (FN1). Hydrocarbon degradation was monitored using gas chromatography-flame ionization detector (GC-FID), and changes in microbial community structure were monitored using Kraken, while functional annotation of putative open reading frames (ORFs) was done using KEGG KofamKOALA and NCBI’s conserved domain database (CDD). Results Gas chromatographic analysis of hydrocarbon fractions revealed the removal of 84.02% and 82.38% aliphatic and 70.09% and 70.14% aromatic fractions in FN4 and FN1 microcosms in 42 days. Shotgun metagenomic analysis of the two metagenomes revealed a remarkable shift in the microbial community structure. In the FN4 metagenome, 92.97% of the population belong to the phylum Firmicutes and its dominant representative genera Anoxybacillus (64.58%), Bacillus (21.47%) and Solibacillus (2.39%). In untreated FN1 metagenome, the phyla Proteobacteria (56.12%), Actinobacteria (23.79%) and Firmicutes (11.20%), and the genera Xanthobacter (9.73%), Rhizobium (7.49%) and Corynebacterium (7.35%), were preponderant. Functional annotation of putative ORFs from the two metagenomes revealed the detection of degradation genes for aromatic hydrocarbons, benzoate, xylene, chlorocyclohexane/chlorobenzene, toluene and several others in FN1 metagenome. In the FN4 metagenome, only seven hydrocarbon degradation genes were detected. Conclusion This study revealed that though CFMM amendment slightly increases the rate of hydrocarbon degradation, it negatively impacts the structural and functional properties of the animal charcoal-polluted soil. It also revealed that intrinsic bioremediation of the polluted soil could be enhanced via addition of water and aeration. Supplementary Information The online version contains supplementary material available at 10.1186/s43141-020-00089-9.
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Affiliation(s)
- Lateef Babatunde Salam
- Department of Biological Sciences, Microbiology unit, Summit University, Offa, Kwara, Nigeria.
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24
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Lukhele T, Nyoni H, Mamba BB, Msagati TAM. Unraveling bacterial diversity in oil refinery effluents. Arch Microbiol 2020; 203:1231-1240. [PMID: 33079208 DOI: 10.1007/s00203-020-02062-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2020] [Revised: 09/01/2020] [Accepted: 09/30/2020] [Indexed: 11/30/2022]
Abstract
Oil refinery effluents are among stressful environments, and they are characterized by alkaline pH, high concentrations of dissolved solids, electrical conductivity, and metals (mainly Fe, Al, B, Sr, Mn, Cu, Ni). In this study, bacterial diversity in these habitats was inferred from full-length 16S rRNA gene sequences obtained from the PacBio® sequencing platform. The results have shown low bacterial diversity in both raw and treated effluents, with sequences representing only two phyla: Firmicutes and Proteobacteria. Sequences from the raw effluents represent four major genera: Bacillus, Wenzhouxiangella, Rhodabaculum, and Halomonas. Whilst bacterial communities from the treated effluents are relatively more diverse as sequences represent five dominant genera: Pseudoxanthomonas, Brevundimonas, Pseudomonas, Rhodobaculum and Rhizobium. Most of the genera represented in the dataset are halophilic or halotolerant microbes known to have the competency to catabolize a broad spectrum of organic and inorganic pollutants. Hypothetically, these bacteria may be relevant for biotechnological and industrial applications, particularly for the remediation of saline industrial wastes.
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Affiliation(s)
- Thabile Lukhele
- Institute of Nanotechnology and Water Sustainability (iNanoWS), College of Science Engineering and Technology, University of South Africa, Florida Science Campus, Johannesburg, South Africa
| | - Hlengilizwe Nyoni
- Institute of Nanotechnology and Water Sustainability (iNanoWS), College of Science Engineering and Technology, University of South Africa, Florida Science Campus, Johannesburg, South Africa
| | - Bhekie Brilliance Mamba
- Institute of Nanotechnology and Water Sustainability (iNanoWS), College of Science Engineering and Technology, University of South Africa, Florida Science Campus, Johannesburg, South Africa.,State Key Laboratory of Separation and Membranes, Membrane Processes, National Center for International Joint Research on Membrane Science and Technology, Tianjin, 300387, People's Republic of China
| | - Titus Alfred Makudali Msagati
- Institute of Nanotechnology and Water Sustainability (iNanoWS), College of Science Engineering and Technology, University of South Africa, Florida Science Campus, Johannesburg, South Africa. .,School of Life Sciences and Bio-Engineering, The Nelson Mandela African Institution of Science and Technology, Tengeru, P O Box 447, Arusha, United Republic of Tanzania.
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25
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Vaidya BP, Hagmann DF, Balacco J, Passchier S, Krumins JA, Goodey NM. Plants mitigate restrictions to phosphatase activity in metal contaminated soils. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 265:114801. [PMID: 32806404 DOI: 10.1016/j.envpol.2020.114801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 05/09/2020] [Accepted: 05/10/2020] [Indexed: 06/11/2023]
Abstract
Soil anthropogenic contaminants can limit enzymatic nutrient mineralization, either by direct regulation or via impacts on the microbial community, thus affecting plant growth in agricultural and non-agricultural soils. The impact on phosphatase activity of mixing two contaminated, post-industrial rail yard soils was investigated; one was vegetated and had high phosphatase function, the other was barren and had low enzymatic function. The two soils had different abiotic properties, including contaminant load, vegetation cover, soil aggregate size distribution, and phosphatase potential. An experimental gradient was established between the two soils to systematically vary the abiotic properties and microbial community composition of the two soils, creating a gradient of novel ecosystems. The time dependence of extracellular phosphatase activity, soil moisture, and organic matter content was assessed along this gradient in the presence and absence of plants. Initially, mixtures with higher percentages of functional, vegetated soil had higher phosphatase activities. Phosphatase activity remained unchanged through time (65 days) in all soil mixtures in unplanted pots, but it increased in planted pots. For example, in the presence of plants, phosphatase activity increased from 0.6 ± 0.1 to 2.4 ± 0.3 μmol•h-1•gdry soil-1 from day one to day 65 in the 1:1 functional:barren soil mixture. The presence of plants also promoted moisture retention. Inoculation of poorly functioning soil with 10% of the functional soil with its microbial community did not, over 65 days, revitalize the poorly functioning soil. The findings showed that abiotic limitations to enzymatic activity in barren brownfield soils could be mitigated by establishing primary production but not by the addition of enzymatically active microbial communities alone.
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Affiliation(s)
- Bhagyashree P Vaidya
- Department of Earth and Environmental Science, Montclair State University, Montclair, NJ, USA, 07043.
| | - Diane F Hagmann
- Department of Earth and Environmental Science, Montclair State University, Montclair, NJ, USA, 07043.
| | - Jennifer Balacco
- Department of Biology, Montclair State University, Montclair, NJ, USA, 07043.
| | - Sandra Passchier
- Department of Earth and Environmental Science, Montclair State University, Montclair, NJ, USA, 07043.
| | | | - Nina M Goodey
- Department of Chemistry and Biochemistry, Montclair State University, Montclair, NJ, 07043, USA; PSEG Institute of Sustainability Studies, Montclair State University, Montclair, NJ, 07043, USA.
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26
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Kamal N, Liu Z, Qian C, Wu J, Zhong X. Improving hybrid Pennisetum growth and cadmium phytoremediation potential by using Bacillus megaterium BM18-2 spores as biofertilizer. Microbiol Res 2020; 242:126594. [PMID: 33007635 DOI: 10.1016/j.micres.2020.126594] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Revised: 08/29/2020] [Accepted: 09/11/2020] [Indexed: 10/23/2022]
Abstract
Environmental pollution with heavy metals becomes an issue of serious concern worldwide. Cadmium is considered one which adversely affects living organisms. Recently, the usage of endophytic bacteria to enhance the plant growth and phytoremediation of heavy metals contaminated sites is gaining great attention. The current study focused on utilizing the spores of Bacillus megaterium BM18-2 as biofertilizer for enhancing the growth of Cd hyperaccumulator Hybrid Pennisetum and Cd tolerance of the plant. Therefore, the production of the highest proportion of BM18-2 spores in short incubation time was investigated using different culture media. The results revealed that the maximum proportion of BM18-2 spores (90%) was obtained following incubation for 48 h in Tryptone- yeast extract media (TY). Furthermore, several growth parameters of H. Pennisetum were shown to be significantly improved by inclusion of BM18-2 spores into Cd contaminated soil in contrast to non- inoculated plant. The chlorophyll concentration of the leaves rose by 5%, 13%, and 22.89% with increasing Cd concentration of soil (20, 40 and 60 mg/Kg, respectively). The percentage of total nitrogen content of the root, stem and leaf was increased due to the bacterial spores inoculation and the highest percentage was recorded in the leaf in all treatments. Moreover, Cd phytoremediation capacity of H. Pennisetum greatly enhanced with the application of BM18-2 spores into the soil. An obvious correlation was also observed between Cd accumulation and bacterial colonization where the Cd accumulation enhanced by 21.9%, 16.5%, and 94.6% and the maximum count of BM18-2 (27 × 105, 194 × 104,and 145 × 104 CFU/g) were recorded in the root system in 20, 40, and 60 mg/Kg Cd spiked soil, respectively. Consequently, the spores of BM18-2 was proven to succeed as biofertilizer to improve growth of H. pennisetum during Cd stress which subsequently improved the phytoremediation of Cd contaminated soil.
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Affiliation(s)
- Nehal Kamal
- National Forage Breeding Innovation Base (JAAS), Nanjing, 210014, PR China; Institute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, PR China; Botany and Microbiology Department, Faculty of Science, Suez University, Suez, Egypt.
| | - Zhiwei Liu
- National Forage Breeding Innovation Base (JAAS), Nanjing, 210014, PR China; Institute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, PR China; Key Laboratory for Crop and Animal Integrated Farming of Ministry of Agriculture and Rural Affairs, Nanjing, 210014, PR China.
| | - Chen Qian
- National Forage Breeding Innovation Base (JAAS), Nanjing, 210014, PR China; Institute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, PR China; Key Laboratory for Crop and Animal Integrated Farming of Ministry of Agriculture and Rural Affairs, Nanjing, 210014, PR China.
| | - Juanzi Wu
- National Forage Breeding Innovation Base (JAAS), Nanjing, 210014, PR China; Institute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, PR China; Key Laboratory for Crop and Animal Integrated Farming of Ministry of Agriculture and Rural Affairs, Nanjing, 210014, PR China.
| | - Xiaoxian Zhong
- National Forage Breeding Innovation Base (JAAS), Nanjing, 210014, PR China; Institute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, PR China; Key Laboratory for Crop and Animal Integrated Farming of Ministry of Agriculture and Rural Affairs, Nanjing, 210014, PR China.
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Engineering Burkholderia xenovorans LB400 BphA through Site-Directed Mutagenesis at Position 283. Appl Environ Microbiol 2020; 86:AEM.01040-20. [PMID: 32709719 DOI: 10.1128/aem.01040-20] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 07/15/2020] [Indexed: 11/20/2022] Open
Abstract
Biphenyl dioxygenase (BPDO), which is a Rieske-type oxygenase (RO), catalyzes the initial dioxygenation of biphenyl and some polychlorinated biphenyls (PCBs). In order to enhance the degradation ability of BPDO in terms of a broader substrate range, the BphAES283M, BphAEp4-S283M, and BphAERR41-S283M variants were created from the parent enzymes BphAELB400, BphAEp4, and BphAERR41, respectively, by a substitution at one residue, Ser283Met. The results of steady-state kinetic parameters show that for biphenyl, the k cat/Km values of BphAES283M, BphAEp4-S283M, and BphAERR41-S283M were significantly increased compared to those of their parent enzymes. Meanwhile, we determined the steady-state kinetics of BphAEs toward highly chlorinated biphenyls. The results suggested that the Ser283Met substitution enhanced the catalytic activity of BphAEs toward 2,3',4,4'-tetrachlorobiphenyl (2,3',4,4'-CB), 2,2',6,6'-tetrachlorobiphenyl (2,2',6,6'-CB), and 2,3',4,4',5-pentachlorobiphenyl (2,3',4,4',5-CB). We compared the catalytic reactions of BphAELB400 and its variants toward 2,2'-dichlorobiphenyl (2,2'-CB), 2,5-dichlorobiphenyl (2,5-CB), and 2,6-dichlorobiphenyl (2,6-CB). The biochemical data indicate that the Ser283Met substitution alters the orientation of the substrate inside the catalytic site and, thereby, its site of hydroxylation, and this was confirmed by docking experiments. We also assessed the substrate ranges of BphAELB400 and its variants with degradation activity. BphAES283M and BphAEp4-S283M were clearly improved in oxidizing some of the 3-6-chlorinated biphenyls, which are generally very poorly oxidized by most dioxygenases. Collectively, the present work showed a significant effect of mutation Ser283Met on substrate specificity/regiospecificity in BPDO. These will certainly be meaningful elements for understanding the effect of the residue corresponding to position 283 in other Rieske oxygenase enzymes.IMPORTANCE The segment from positions 280 to 283 in BphAEs is located at the entrance of the catalytic pocket, and it shows variation in conformation. In previous works, results have suggested but never proved that residue Ser283 of BphAELB400 might play a role in substrate specificity. In the present paper, we found that the Ser283Met substitution significantly increased the specificity of the reaction of BphAE toward biphenyl, 2,3',4,4'-CB, 2,2',6,6'-CB, and 2,3',4,4',5-CB. Meanwhile, the Ser283Met substitution altered the regiospecificity of BphAE toward 2,2'-dichlorobiphenyl and 2,6-dichlorobiphenyl. Additionally, this substitution extended the range of PCBs metabolized by the mutated BphAE. BphAES283M and BphAEp4-S283M were clearly improved in oxidizing some of the more highly chlorinated biphenyls (3 to 6 chlorines), which are generally very poorly oxidized by most dioxygenases. We used modeled and docked enzymes to identify some of the structural features that explain the new properties of the mutant enzymes. Altogether, the results of this study provide better insights into the mechanisms by which BPDO evolves to change and/or expand its substrate range and its regiospecificity.
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Zhao L, Li Y, Ren W, Huang Y, Wang X, Fu Z, Ma W, Teng Y, Luo Y. Pesticide residues in soils planted with Panax notoginseng in south China, and their relationships in Panax notoginseng and soil. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 201:110783. [PMID: 32534333 DOI: 10.1016/j.ecoenv.2020.110783] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Revised: 05/15/2020] [Accepted: 05/18/2020] [Indexed: 06/11/2023]
Abstract
In this study, 73 samples from soils planted with Panax notoginseng and six P. notoginseng samples were collected in Yunnan Province to investigate the residual levels of six pesticides and their relationships with P. notoginseng and soil. All six pesticides were detected in the soils planted with P. notoginseng located in three regions of Shilin, Kaiyuan, and Yanshan. The detection frequencies of the pesticides in the soils followed the order: quintozene (100%) > iprodione (96%) > procymidone (69%) > chlorothalonil (51%) > pyrimethanil (49%) > pyraclostrobin (29%). The median concentrations of iprodione, pyraclostrobin, pyrimethanil, quintozene, procymidone, and chlorothalonil were 46.40, 6.4, 3.1, 2.86, 2.69, and 0.24 μg/kg, respectively. The mean concentrations of pesticides in the three regions followed the order: Kaiyuan > Shilin > Yanshan, except for iprodione. Furthermore, the concentrations of pesticide residues in soils in each region followed the order: soils never planted with P. notoginseng < soils previously planted with P. notoginseng < soils currently planted with P. notoginseng. The concentration of chlorothalonil in P. notoginseng followed the order: root > stem > leaf, whereas those of the other five pesticides followed the opposite order: root < stem < leaf. There were significant positive correlations between the mean concentrations of pesticides in P. notoginseng and those in the corresponding soils. These results indicate that the rational application of pesticides in P. notoginseng cultivation would be effective for reducing the accumulation of pesticides in P. notoginseng to protect people from the harmful effects of residual pesticides.
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Affiliation(s)
- Ling Zhao
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Yan Li
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Wenjie Ren
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Yang Huang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Xiaomi Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Zhaocong Fu
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Wenting Ma
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Ying Teng
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of the Chinese Academy of Sciences, Beijing, 100049, China.
| | - Yongming Luo
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of the Chinese Academy of Sciences, Beijing, 100049, China
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29
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Lamin H, Alami S, Bouhnik O, Bennis M, Benkritly S, Abdelmoumen H, Bedmar EJ, Missbah-El Idrissi M. Identification of the endosymbionts from Sulla spinosissima growing in a lead mine tailings in Eastern Morocco as Mesorhizobium camelthorni sv. aridi. J Appl Microbiol 2020; 130:948-959. [PMID: 32866324 DOI: 10.1111/jam.14834] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2020] [Revised: 08/18/2020] [Accepted: 08/23/2020] [Indexed: 02/06/2023]
Abstract
AIMS To identify the bacteria nodulating Sulla spinosissima growing profusely in a lead and zinc mine tailings in Eastern Morocco. METHODS AND RESULTS In all, 32 rhizobial cultures, isolated from root nodules of S. spinosissima growing in soils of the mining site, were tolerant to different heavy metals. The ERIC-polymerase chain reaction (PCR) fingerprinting analysis clustered the isolates into seven different groups, and the analysis of the 16S rRNA sequences of four selected representative strains, showed they were related to different species of the genus Mesorhizobium. The atpD, glnII and recA housekeeping genes analysis confirmed the affiliation of the four representative strains to Mesorhizobium camelthorni CCNWXJ40-4T , with similarity percentages varying from 96·30 to 98·30%. The sequences of the nifH gene had 97·33-97·78% similarities with that of M. camelthorni CCNWXJ40-4T ; however, the nodC phylogeny of the four strains diverged from the type and other reference strains of M. camelthorni and formed a separated cluster. The four strains nodulate also Astragalus gombiformis and A. armatus but did not nodulate A. boeticus, Vachellia gummifera, Prosopis chilensis, Cicer arietinum, Lens culinaris, Medicago truncatula, Lupinus luteus or Phaseolus vulgaris. CONCLUSIONS Based on similarities of the nodC symbiotic gene and differences in the host range, the strains isolated from S. spinosissima growing in soils of the Sidi Boubker mining site may form a different symbiovar within Mesorhizobium for which the name aridi is proposed. SIGNIFICANCE AND IMPACT OF THE STUDY In this work, we show that strains of M. camelthorni species nodulating S. spinosissima in the arid area of Eastern Morocco constitute a distinct phylogenetic clade of nodulation genes; we named symbiovar aridi, which encompasses also mesorhizobia from other Mediterranean desert legumes.
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Affiliation(s)
- H Lamin
- Centre de Biotechnologies végétales et microbiennes, Biodiversité et Environnement, Faculty of Sciences, Mohammed V University in Rabat, Rabat, Morocco
| | - S Alami
- Centre de Biotechnologies végétales et microbiennes, Biodiversité et Environnement, Faculty of Sciences, Mohammed V University in Rabat, Rabat, Morocco
| | - O Bouhnik
- Centre de Biotechnologies végétales et microbiennes, Biodiversité et Environnement, Faculty of Sciences, Mohammed V University in Rabat, Rabat, Morocco
| | - M Bennis
- Centre de Biotechnologies végétales et microbiennes, Biodiversité et Environnement, Faculty of Sciences, Mohammed V University in Rabat, Rabat, Morocco
| | - S Benkritly
- Laboratoire de Biotechnologie des Rhizobiums et Amélioration des Plantes (LBRAP), Département de Biotechnologie, Faculté des Sciences, Université d'Oran1 Ahmed Ben Bella, Es Senia, Algeria
| | - H Abdelmoumen
- Centre de Biotechnologies végétales et microbiennes, Biodiversité et Environnement, Faculty of Sciences, Mohammed V University in Rabat, Rabat, Morocco
| | - E J Bedmar
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas (CSIC), Granada, Spain
| | - M Missbah-El Idrissi
- Centre de Biotechnologies végétales et microbiennes, Biodiversité et Environnement, Faculty of Sciences, Mohammed V University in Rabat, Rabat, Morocco
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Ju W, Liu L, Jin X, Duan C, Cui Y, Wang J, Ma D, Zhao W, Wang Y, Fang L. Co-inoculation effect of plant-growth-promoting rhizobacteria and rhizobium on EDDS assisted phytoremediation of Cu contaminated soils. CHEMOSPHERE 2020; 254:126724. [PMID: 32334248 DOI: 10.1016/j.chemosphere.2020.126724] [Citation(s) in RCA: 55] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2019] [Revised: 02/08/2020] [Accepted: 04/05/2020] [Indexed: 06/11/2023]
Abstract
Chelants application can increase the bioavailability of metals, subsequently limiting plant growth and reducing the efficiency of phytoremediation. Plant growth-promoting rhizobacteria (PGPRs) and rhizobium have substantial potential to improve plant growth and plant tolerance to metal stress. We evaluated the effects of co-inoculation with a PGPR strain (Paenibacillus mucilaginosus) and a Cu-resistant rhizobium strain (Sinorhizobium meliloti) on the efficiency of biodegradable chelant (S,S-ethylenediaminedisuccinic acid; EDDS) assisted phytoremediation of a Cu contaminated soil using alfalfa. The highest total Cu extraction by alfalfa was observed in the EDDS-treated soil upon co-inoculation with the PGPR and rhizobium strains, which was 1.2 times higher than that without co-inoculation. Partial least squares path modeling identified plant oxidative damage and soil microbial biomass as the key variables influencing Cu uptake by alfalfa roots. Co-inoculation significantly reduced the oxidative damage to alfalfa by mitigating the accumulation of malondialdehyde and reactive oxygen species, and improving the antioxidation capacity of the plant in the presence of EDDS. EDDS application decreased microbial diversity in the rhizosphere, whereas co-inoculation increased microbial biomass carbon and nitrogen, and microbial community diversity. Increased relative abundances of Actinobacteria and Bacillus and the presence of Firmicutes taxa as potential biomarkers demonstrated that co-inoculation increased soil nutrient content, and improved plant growth. Co-inoculation with PGPR and rhizobium can be useful for altering plant-soil biochemical responses during EDDS-enhanced phytoremediation to alleviate phytotoxicity of heavy metals and improve soil biochemical activities. This study provides an effective strategy for improving phytoremediation efficiency and soil quality during chelant assisted phytoremediation of metal-contaminated soils.
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Affiliation(s)
- Wenliang Ju
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, 712100, China; CAS Center for Excellence in Quaternary Science and Global Change, Chinese Academy of Sciences, Xian, 710061, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Lei Liu
- Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Hanzeplein 1, 9713 GZ, Groningen, the Netherlands
| | - Xiaolian Jin
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, 712100, China
| | - Chengjiao Duan
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, 712100, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yongxing Cui
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, 712100, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jie Wang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, 712100, China
| | - Dengke Ma
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, 712100, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Wei Zhao
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, 712100, China
| | - Yunqiang Wang
- CAS Center for Excellence in Quaternary Science and Global Change, Chinese Academy of Sciences, Xian, 710061, China; State Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xian, 710061, China
| | - Linchuan Fang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, 712100, China; CAS Center for Excellence in Quaternary Science and Global Change, Chinese Academy of Sciences, Xian, 710061, China.
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The Response of Red Clover ( Trifolium pratense L.) to Separate and Mixed Inoculations with Rhizobium leguminosarum and Azospirillum brasilense in Presence of Polycyclic Aromatic Hydrocarbons. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:ijerph17165751. [PMID: 32784849 PMCID: PMC7460069 DOI: 10.3390/ijerph17165751] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Revised: 07/31/2020] [Accepted: 08/06/2020] [Indexed: 11/20/2022]
Abstract
This study aimed to evaluate the impact of co-inoculation Rhizobium sp. and Azospirillum sp. on plant (Trifolium pratense L.) growth in the presence of polycyclic aromatic hydrocarbon (PAH) contamination (anthracene, phenanthrene, and pyrene). Eight strains from the genus Rhizobium leguminosarum bv. trifolii were selected for biotest analysis. Two methods of inoculation were used in the chamber experiment: (1) R. leguminosarum alone and (2) a combined inoculant (R. leguminosarum and Azospirillum brasilense). For comparison, non-contaminated controls were also used. The results demonstrated that co-inoculation of plants with Rhizobium and Azospirillum resulted in more root and shoot biomass than in plants inoculated with R. leguminosarum alone. The results indicated that application of a co-inoculation of bacteria from Rhizobium and Azospirillum species had a positive effect on clover nodulation and growth under the condition of PAH contamination.
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Yu YQ, Luo HQ, Tang WY, Yu CP, Lu L, Li JW, Yang JY. Mechanism of vanadium(IV) resistance of the strains isolated from a vanadium titanomagnetite mining region. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 195:110463. [PMID: 32182531 DOI: 10.1016/j.ecoenv.2020.110463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2020] [Revised: 03/06/2020] [Accepted: 03/08/2020] [Indexed: 06/10/2023]
Abstract
Microbial treatment for vanadium contamination of soils is a favorable and environment-friendly method. However, information of the resistant mechanism of the strains in soils to vanadium, especially to tetravalent vanadium [vanadium(IV)], is still limited. Herein, potential of the vanadium(IV) biosorption and biotransformation of the strains (4K1, 4K2, 4K3 and 4K4) which were capable of tolerating vanadium(IV) was determined. For biosorption, the bioadsorption and the bioabsorption of vanadium(IV) occur on the bacterial cell wall and within the cell, respectively, were taken into consideration. Comparison of the vanadium(IV) adsorbed on the bacterial cell walls and remained in the cells after sorption indicated the major bacterial vanadium(IV) sorption role of the bioadsorption which was at least one order of magnitude higher than the bioabsorption amount. Isotherm study using various isotherm models revealed a monolayer and a multilayer vanadium(IV) biosorption by 4K2 and the others (4K1, 4K3 and 4K4), respectively. Higher biosorption was observed in acidic conditions than in alkaline conditions, and the maximum biosorption was 2.41, 9.35, 7.76 and 8.44 mg g-1 observed at pH 6 for 4K1, at pH 3 for 4K2, and at pH 4 for 4K3 and 4K4, respectively. At the present experimental range of the initial vanadium(IV) concentration, optimal biosorption capacity of the bacteria was observed at the vanadium(IV) level of 100-250 mg L-1. Different biotransformation level of vanadium(IV) in soils by the stains was observed during a 28-d pot incubation of the soils mixed with the strains, which can be attributed to the discrepancy of both soil properties and bacterial species. Present study can help to fill up the gaps of the insufficient knowledge of the vanadium(IV) resistant mechanism of the strains in soils.
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Affiliation(s)
- Ya-Qi Yu
- College of Architecture and Environment & Healthy Food Evaluation Research Center, Sichuan University, Chengdu, 610065, China
| | - Hou-Qiao Luo
- College of Architecture and Environment & Healthy Food Evaluation Research Center, Sichuan University, Chengdu, 610065, China
| | - Wen-Ya Tang
- College of Architecture and Environment & Healthy Food Evaluation Research Center, Sichuan University, Chengdu, 610065, China
| | - Chang-Ping Yu
- Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, 361021, China
| | - Li Lu
- College of Architecture and Environment & Healthy Food Evaluation Research Center, Sichuan University, Chengdu, 610065, China
| | - Jiang-Wei Li
- Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, 361021, China
| | - Jin-Yan Yang
- College of Architecture and Environment & Healthy Food Evaluation Research Center, Sichuan University, Chengdu, 610065, China.
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Tsyganov VE, Tsyganova AV, Gorshkov AP, Seliverstova EV, Kim VE, Chizhevskaya EP, Belimov AA, Serova TA, Ivanova KA, Kulaeva OA, Kusakin PG, Kitaeva AB, Tikhonovich IA. Efficacy of a Plant-Microbe System: Pisum sativum (L.) Cadmium-Tolerant Mutant and Rhizobium leguminosarum Strains, Expressing Pea Metallothionein Genes PsMT1 and PsMT2, for Cadmium Phytoremediation. Front Microbiol 2020; 11:15. [PMID: 32063892 PMCID: PMC7000653 DOI: 10.3389/fmicb.2020.00015] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Accepted: 01/06/2020] [Indexed: 11/13/2022] Open
Abstract
Two transgenic strains of Rhizobium leguminosarum bv. viciae, 3841-PsMT1 and 3841-PsMT2, were obtained. These strains contain the genetic constructions nifH-PsMT1 and nifH-PsMT2 coding for two pea (Pisum sativum L.) metallothionein genes, PsMT1 and PsMT2, fused with the promoter region of the nifH gene. The ability of both transgenic strains to form nodules on roots of the pea wild-type SGE and the mutant SGECdt, which is characterized by increased tolerance to and accumulation of cadmium (Cd) in plants, was analyzed. Without Cd treatment, the wild type and mutant SGECdt inoculated with R. leguminosarum strains 3841, 3841-PsMT1, or 3841-PsMT2 were similar histologically and in their ultrastructural organization of nodules. Nodules of wild-type SGE inoculated with strain 3841 and exposed to 0.5 μM CdCl2 were characterized by an enlarged senescence zone. It was in stark contrast to Cd-treated nodules of the mutant SGECdt that maintained their proper organization. Cadmium treatment of either wild-type SGE or mutant SGECdt did not cause significant alterations in histological organization of nodules formed by strains 3841-PsMT1 and 3841-PsMT2. Although some abnormalities were observed at the ultrastructural level, they were less pronounced in the nodules of strain 3841-PsMT1 than in those formed by 3841-PsMT2. Both transgenic strains also differed in their effects on pea plant growth and the Cd and nutrient contents in shoots. In our opinion, combination of Cd-tolerant mutant SGECdt and the strains 3841-PsMT1 or 3841-PsMT2 may be used as an original model for study of Cd tolerance mechanisms in legume-rhizobial symbiosis and possibilities for its application in phytoremediation or phytostabilization technologies.
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Affiliation(s)
- Viktor E. Tsyganov
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
- Saint Petersburg Scientific Center (RAS), Saint Petersburg, Russia
| | - Anna V. Tsyganova
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
| | - Artemii P. Gorshkov
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
| | - Elena V. Seliverstova
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
- Sechenov Institute of Evolutionary Physiology and Biochemistry (RAS), Saint Petersburg, Russia
| | - Viktoria E. Kim
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
| | - Elena P. Chizhevskaya
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
| | - Andrey A. Belimov
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
| | - Tatiana A. Serova
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
| | - Kira A. Ivanova
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
| | - Olga A. Kulaeva
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
| | - Pyotr G. Kusakin
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
| | - Anna B. Kitaeva
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
| | - Igor A. Tikhonovich
- All-Russian Research Institute for Agricultural Microbiology, Saint Petersburg, Russia
- Department of Genetics and Biotechnology, Saint Petersburg State University, Saint Petersburg, Russia
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Zhao A, Gao L, Chen B, Feng L. Phytoremediation potential of Miscanthus sinensis for mercury-polluted sites and its impacts on soil microbial community. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:34818-34829. [PMID: 31654309 DOI: 10.1007/s11356-019-06563-3] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2019] [Accepted: 09/20/2019] [Indexed: 05/04/2023]
Abstract
Phytoremediation potential of Miscanthus sinensis and its impacts on soil microbial community and nutrients were evaluated by pot experiment at soil mercury concentration from 1.48 to 706 mg kg-1. The changes in biomass yield in dry mass, chlorophyll content, and SOD activity indicated Miscanthus sinensis was tolerant to higher levels of soil mercury exposure, and could grow even if at soil mercury up to 706 mg kg-1. Mercury bioconcentration and translocation factors were close to or greater than 1 when exposed to soil mercury up to 183 mg kg-1, demonstrating Miscanthus sinensis a potential phytoremediator for mercury-polluted soils. Miscanthus sinensis planting could significantly improve the diversity and abundance of soil microbial community, but might cause potential loss of soil nitrogen and phosphorus in the early and middle of its growth. In a word, the study indicated Miscanthus sinensis was a promising energy crop linking biofuel production and phytoremediation of mercury-contaminated sites.
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Affiliation(s)
- Anqi Zhao
- Department of Environmental Sciences and Engineering, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China
| | - Lingyun Gao
- Environmental Convention Implementation Technical Center, Ministry of Ecological Environment, Beijing, 100035, People's Republic of China
| | - Buqing Chen
- Department of Environmental Sciences and Engineering, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China
| | - Liu Feng
- Department of Environmental Sciences and Engineering, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China.
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Yu X, Kang X, Li Y, Cui Y, Tu W, Shen T, Yan M, Gu Y, Zou L, Ma M, Xiang Q, Zhao K, Liang Y, Zhang X, Chen Q. Rhizobia population was favoured during in situ phytoremediation of vanadium-titanium magnetite mine tailings dam using Pongamia pinnata. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 255:113167. [PMID: 31522008 DOI: 10.1016/j.envpol.2019.113167] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 08/27/2019] [Accepted: 09/02/2019] [Indexed: 05/28/2023]
Abstract
Mine tailings contain toxic metals and can lead to serious pollution of soil environment. Phytoremediation using legumes has been regarded as an eco-friendly way for the rehabilitation of tailings-laden lands but little is known about the changes of microbial structure during the process. In the present study, we monitored the dynamic change of microbiota in the rhizosphere of Pongamia pinnata during a 2-year on-site remediation of vanadium-titanium magnetite tailings. After remediation, overall soil health conditions were significantly improved as increased available N and P contents and enzyme activities were discovered. There was also an increase of microbial carbon and nitrogen contents. The Illumina sequencing technique revealed that the abundance of taxa under Proteobacteria was increased and rhizobia-related OTUs were preferentially enriched. A significant difference was discovered for sample groups before and after remediation. Rhizobium and Nordella were identified as the keystone taxa at genus rank. The functional prediction indicated that nitrogen fixation was enhanced, corresponding well with qPCR results which showed a significant increase of nifH gene copy numbers by the 2nd year. Our findings for the first time elucidated that legume phytoremediation can effectively cause microbial communities to shift in favour of rhizobia in heavy metal contaminated soil.
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Affiliation(s)
- Xiumei Yu
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Xia Kang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China; Geomicrobiology Group, School of Life Sciences, University of Dundee, Dundee DD1 5EH, UK
| | - Yanmei Li
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Yongliang Cui
- Sichuan Provincial Academy of Natural Resource and Sciences, Chengdu 610015, China
| | - Weiguo Tu
- Sichuan Provincial Academy of Natural Resource and Sciences, Chengdu 610015, China
| | - Tian Shen
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Min Yan
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Yunfu Gu
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Likou Zou
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Menggen Ma
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Quanju Xiang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Ke Zhao
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Yueyang Liang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Xiaoping Zhang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Qiang Chen
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China.
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Tian H, Kah M, Kariman K. Are Nanoparticles a Threat to Mycorrhizal and Rhizobial Symbioses? A Critical Review. Front Microbiol 2019; 10:1660. [PMID: 31396182 PMCID: PMC6668500 DOI: 10.3389/fmicb.2019.01660] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Accepted: 07/04/2019] [Indexed: 11/13/2022] Open
Abstract
Soil microorganisms can be exposed to, and affected by, nanoparticles (NPs) that are either purposely released into the environment (e.g., nanoagrochemicals and NP-containing amendments) or reach soil as nanomaterial contaminants. It is crucial to evaluate the potential impact of NPs on key plant-microbe symbioses such as mycorrhizas and rhizobia, which are vital for health, functioning and sustainability of both natural and agricultural ecosystems. Our critical review of the literature indicates that NPs may have neutral, negative, or positive effects on development of mycorrhizal and rhizobial symbioses. The net effect of NPs on mycorrhizal development is driven by various factors including NPs type, speciation, size, concentration, fungal species, and soil physicochemical properties. As expected for potentially toxic substances, NPs concentration was found to be the most critical factor determining the toxicity of NPs against mycorrhizas, as even less toxic NPs such as ZnO NPs can be inhibitory at high concentrations, and highly toxic NPs such as Ag NPs can be stimulatory at low concentrations. Likewise, rhizobia show differential responses to NPs depending on the NPs concentration and the properties of NPs, rhizobia, and growth substrate, however, most rhizobial studies have been conducted in soil-less media, and the documented effects cannot be simply interpreted within soil systems in which complex interactions occur. Overall, most studies indicating adverse effects of NPs on mycorrhizas and rhizobia have been performed using either unrealistically high NP concentrations that are unlikely to occur in soil, or simple soil-less media (e.g., hydroponic cultures) that provide limited information about the processes occurring in the real environment/agrosystems. To safeguard these ecologically paramount associations, along with other ecotoxicological considerations, large-scale application of NPs in farming systems should be preceded by long-term field trials and requires an appropriate application rate and comprehensive (preferably case-specific) assessment of the context parameters i.e., the properties of NPs, microbial symbionts, and soil. Directions and priorities for future research are proposed based on the gaps and experimental restrictions identified.
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Affiliation(s)
- Hui Tian
- Key Laboratory of Plant Nutrition and Agri-environment in Northwest China, Ministry of Agriculture, College of Natural Resources and Environment, Northwest A&F University, Yangling, China
| | - Melanie Kah
- School of Environment, The University of Auckland, Auckland, New Zealand
| | - Khalil Kariman
- School of Agriculture and Environment, The University of Western Australia, Crawley, WA, Australia
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Colin Y, Goberna M, Verdú M, Navarro-Cano JA. Successional trajectories of soil bacterial communities in mine tailings: The role of plant functional traits. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 241:284-292. [PMID: 31009816 DOI: 10.1016/j.jenvman.2019.04.023] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2018] [Revised: 02/20/2019] [Accepted: 04/07/2019] [Indexed: 06/09/2023]
Abstract
Plant species identity is assumed to be a major driver of belowground microbial diversity and composition. However, diagnosing which plant functional traits are responsible for shaping microbial communities remains elusive. Primary succession on barren metalliferous mining substrates was selected as the framework to study above-belowground interactions, and plant functional traits that lead the successional trajectories of soil bacterial communities were identified. The impact of the plant functional group (i.e. trees, shrubs, dwarf shrubs, perennial grasses), a trait integrating the life span and morphological structure, on the bacterial primary succession was monitored. Bacterial diversity and composition was estimated along plant size gradients including over 90 scattered patches ranging from seedlings to mature multispecific patches. Soil bacterial diversity was affected by heavy metals levels and increased towards higher resource availability underneath mature patches, with stress-tolerant heterotrophs and phototrophs being replaced by competitive heterotrophs. The plant functional group modulated these general patterns and shrubs had the greatest impact belowground by inducing the largest increase in soil fertility. Functional traits related to leaf decomposability and root architecture further determined the composition and structure of bacterial communities. These results underline the importance of plant functional traits in the assembly of soil bacterial communities, and can help guiding restoration of degraded lands.
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Affiliation(s)
- Yannick Colin
- Centro de Investigaciones sobre Desertificación (CSIC-UVEG-GV), Carretera Moncada ‒ Náquera, km 4.5, Moncada, Valencia, 46113, Spain.
| | - Marta Goberna
- Centro de Investigaciones sobre Desertificación (CSIC-UVEG-GV), Carretera Moncada ‒ Náquera, km 4.5, Moncada, Valencia, 46113, Spain; Department of Environment and Agronomy, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Ctra. de la Coruña, km 7.5, E-28040, Madrid, Spain
| | - Miguel Verdú
- Centro de Investigaciones sobre Desertificación (CSIC-UVEG-GV), Carretera Moncada ‒ Náquera, km 4.5, Moncada, Valencia, 46113, Spain
| | - Jose A Navarro-Cano
- Centro de Investigaciones sobre Desertificación (CSIC-UVEG-GV), Carretera Moncada ‒ Náquera, km 4.5, Moncada, Valencia, 46113, Spain
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Rafique M, Ortas I, Rizwan M, Sultan T, Chaudhary HJ, Işik M, Aydin O. Effects of Rhizophagus clarus and biochar on growth, photosynthesis, nutrients, and cadmium (Cd) concentration of maize (Zea mays) grown in Cd-spiked soil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:20689-20700. [PMID: 31104234 DOI: 10.1007/s11356-019-05323-7] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2018] [Accepted: 04/30/2019] [Indexed: 05/08/2023]
Abstract
Cadmium (Cd) toxicity in agricultural crops is a widespread problem. Little is known about biochar and arbuscular mycorrhizal fungi (AMF) effect on Cd concentration in maize plant either applied separately or in combination. Current study was performed to demonstrate effects of biochar and Rhizophagus clarus on plant growth, photosynthesis activity, nutrients (P, Ca, Mg, Fe, Cu, and Mn), and Cd concentration in maize grown in Cd-spiked soil. The alkaline soil was spiked by Cd factor at three levels: 0 (Cd 0), 5 (Cd 5), and 10 (Cd 10) mg/kg; biochar factor at two levels: 0 and 1%; and mycorrhizal inoculum factor at two levels: MF0 and MF1 (R. clraus). Plants were harvested after 70 days of seed germination, and various morphological and physiological parameters, as well as elemental concentration and root colonization, were recorded. Addition of biochar increased plant biomass by 21% (Cd 5) and 93% (Cd 10), MF1 enhanced by 53% (Cd 0) and 69% (Cd 10), while biochar + MF1 enhanced dry plant biomass by 70% (Cd 0) and 94% (Cd 10). Results showed maximum increase of 94% (Cd 10) in plant biomass was observed in Cd-spiked soil. Root colonization decreased proportionally by increasing Cd concentration and at Cd 10, colonization was 36.7% and 31.7% for MF1 and biochar + MF1 treatments, respectively. Besides that, addition of biochar enhanced root attributes (root length, volume, and surface area) by 34-58% compared to control in Cd 10. The MF1 increased these attributes by 11-78% while biochar + MF1 enhanced by 32-61% in Cd-spiked soil. However, biochar + MF1 neutralized Cd stress in maize plant for gaseous attributes (assimilation rate, transpiration rate, intercellular CO2, and stomatal conductance). The MF1 enhanced Cd concentration in plant as it was 3.32 mg/kg in Cd 5 and 6.73 mg/kg in Cd 10 treatments while addition of biochar phytostabilized Cd and reduced its concentration in plants by 2.0 mg/kg in Cd 5 and 4.27 mg/kg in Cd 10. The biochar + MF1 had 2.9 mg/kg and 4.8 mg/kg Cd concentration in Cd 5 and Cd 10 plants, respectively. Phosphorus concentration was augmented in shoots (up to 26%) and roots (up to 20%) of maize plant in biochar-amended soil than control plants. In biochar + MF1, concentration of P was 1.01% and 0.73% in Cd 5 and Cd 10, respectively. It is concluded that biochar + MF1 treatment enhances plant biomass while addition of sole biochar reduced Cd uptake, slightly indifferent to earlier treatment.
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Affiliation(s)
- Mazhar Rafique
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan
- Department of Soil Science and Plant Nutrition, Cukurova University, 1150, Adana, Turkey
| | - Ibrahim Ortas
- Department of Soil Science and Plant Nutrition, Cukurova University, 1150, Adana, Turkey
| | - Muhammad Rizwan
- Department of Environmental Sciences and Engineering, Government College University, Allama Iqbal Road, Faisalabad, 38000, Pakistan.
| | - Tariq Sultan
- Land Resources Research Institute, National Agricultural Research Centre, Islamabad, 44000, Pakistan
| | | | - Mehmet Işik
- Department of Soil Science and Plant Nutrition, Cukurova University, 1150, Adana, Turkey
| | - Oğuzhan Aydin
- Department of Soil Science and Plant Nutrition, Cukurova University, 1150, Adana, Turkey
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Ren XM, Guo SJ, Tian W, Chen Y, Han H, Chen E, Li BL, Li YY, Chen ZJ. Effects of Plant Growth-Promoting Bacteria (PGPB) Inoculation on the Growth, Antioxidant Activity, Cu Uptake, and Bacterial Community Structure of Rape ( Brassica napus L.) Grown in Cu-Contaminated Agricultural Soil. Front Microbiol 2019; 10:1455. [PMID: 31316489 PMCID: PMC6610483 DOI: 10.3389/fmicb.2019.01455] [Citation(s) in RCA: 57] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Accepted: 06/11/2019] [Indexed: 11/13/2022] Open
Abstract
Previous analyses of plant growth-promoting bacteria (PGPB) combined with the remediation of heavy metal pollution in soil have largely been performed under potting or greenhouse conditions, and in situ remediation experiments under field conditions have rarely been reported. In this study, the effects of the metal-resistant PGPB Microbacterium oxydans JYC17, Pseudomonas thivervalensis Y1-3-9, and Burkholderia cepacia J62 on soil Cu pollution under rape remediation were studied in the farmland surrounding the Nanjing Jiuhuashan copper mining region in China. Following inoculation treatment for 50 days, the biomasses of the rape inoculated with strains JYC17, Y1-3-9, and J62 increased, and the total amounts of Cu uptake increased by 113.38, 66.26, and 67.91%, respectively, the translocation factor (TF) of rape inoculated with J62 was 0.85, a significant increase of 70.68%, thus improving the Cu remediation efficiency of the rape. Y1-3-9 and J62 affected the bioavailability of Cu in the soil, and the water-soluble Cu contents were increased by 10.13 and 41.77%, respectively, compared with the control. The antioxidant activities in the rape leaves showed that the tested bacteria increased the contents of antioxidant non-enzymatic substances, including ascorbic acid (ASA) and glutathione (GSH), which were increased by 40.24-91.22% and 9.89-17.67%, respectively, thereby reducing the oxidative stress caused by heavy metals and the contents of thiobarbituric acid-reactive substances (TBARS) and peroxidase (POD). PCR-denaturing gradient gel electrophoresis (PCR-DGGE) was used to analyze the effects of the tested bacteria on the cultivation-dependent and cultivation-independent bacterial communities in the root endosphere and rhizosphere soil of the rape. The sequencing results of the DGGE bands indicated that the tested bacteria colonized the endosphere and rhizosphere, and they became an important component of the cultivation-dependent bacteria. The canonical correspondence analysis (CCA) of the DGGE profile and similarity cluster analysis showed that the tested bacteria affected the cultivation-dependent and cultivation-independent bacterial communities in the root endosphere and rhizosphere. In this experiment, the effects and mechanisms of the combined plant-microbe remediation under field conditions were preliminarily studied, and the results are expected to provide a theoretical basis for future combined remediation experiments.
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Affiliation(s)
- Xue-Min Ren
- Innovation Center of Water Security for Water Source Region of Mid-Route Project of South-North Water Diversion of Henan Province, School of Agricultural Engineering, Nanyang Normal University, Nanyang, China
| | - Shi-Jun Guo
- School of Life Sciences and Technology, Nanyang Normal University, Nanyang, China
| | - Wei Tian
- Nanjing Institute of Environmental Sciences, Ministry of Environmental Protection, Nanjing, China
| | - Yan Chen
- School of Life Sciences and Technology, Nanyang Normal University, Nanyang, China
| | - Hui Han
- Innovation Center of Water Security for Water Source Region of Mid-Route Project of South-North Water Diversion of Henan Province, School of Agricultural Engineering, Nanyang Normal University, Nanyang, China
| | - E. Chen
- Gansu Province Environmental Monitoring Centre, Lanzhou, China
| | - Bai-Lian Li
- Innovation Center of Water Security for Water Source Region of Mid-Route Project of South-North Water Diversion of Henan Province, School of Agricultural Engineering, Nanyang Normal University, Nanyang, China
- Ecological Complexity and Modelling Laboratory, Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA, United States
| | - Yu-Ying Li
- Innovation Center of Water Security for Water Source Region of Mid-Route Project of South-North Water Diversion of Henan Province, School of Agricultural Engineering, Nanyang Normal University, Nanyang, China
| | - Zhao-Jin Chen
- Innovation Center of Water Security for Water Source Region of Mid-Route Project of South-North Water Diversion of Henan Province, School of Agricultural Engineering, Nanyang Normal University, Nanyang, China
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Shen G, Ju W, Liu Y, Guo X, Zhao W, Fang L. Impact of Urea Addition and Rhizobium Inoculation on Plant Resistance in Metal Contaminated Soil. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2019; 16:E1955. [PMID: 31159445 PMCID: PMC6603927 DOI: 10.3390/ijerph16111955] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2019] [Revised: 05/27/2019] [Accepted: 05/29/2019] [Indexed: 12/16/2022]
Abstract
Legume-rhizobium symbiosis has been heavily investigated for their potential to enhance plant metal resistance in contaminated soil. However, the extent to which plant resistance is associated with the nitrogen (N) supply in symbiont is still uncertain. This study investigates the effect of urea or/and rhizobium (Sinorhizobium meliloti) application on the growth of Medicago sativa and resistance in metals contaminated soil (mainly with Cu). The results show that Cu uptake in plant shoots increased by 41.7%, 69%, and 89.3% with urea treatment, rhizobium inoculation, and their combined treatment, respectively, compared to the control group level. In plant roots, the corresponding values were 1.9-, 1.7-, and 1.5-fold higher than the control group values, respectively. Statistical analysis identified that N content was the dominant variable contributing to Cu uptake in plants. Additionally, a negative correlation was observed between plant oxidative stress and N content, indicating that N plays a key role in plant resistance. Oxidative damage decreased after rhizobium inoculation as the activities of antioxidant enzymes (catalase and superoxide dismutase in roots and peroxidase in plant shoots) were stimulated, enhancing plant resistance and promoting plant growth. Our results suggest that individual rhizobium inoculation, without urea treatment, is the most recommended approach for effective phytoremediation of contaminated land.
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Affiliation(s)
- Guoting Shen
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling 712100, China.
| | - Wenliang Ju
- Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling 712100, China.
- University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Yuqing Liu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling 712100, China.
| | - Xiaobin Guo
- Agriculture Production and Research Division, Department of Fisheries and Land Resources, Government of Newfoundland and Labrador, Corner Brook, NL A2H 6J8, Canada.
| | - Wei Zhao
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling 712100, China.
| | - Linchuan Fang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling 712100, China.
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Fagorzi C, Checcucci A, diCenzo GC, Debiec-Andrzejewska K, Dziewit L, Pini F, Mengoni A. Harnessing Rhizobia to Improve Heavy-Metal Phytoremediation by Legumes. Genes (Basel) 2018; 9:genes9110542. [PMID: 30413093 PMCID: PMC6266702 DOI: 10.3390/genes9110542] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Revised: 11/05/2018] [Accepted: 11/06/2018] [Indexed: 12/15/2022] Open
Abstract
Rhizobia are bacteria that can form symbiotic associations with plants of the Fabaceae family, during which they reduce atmospheric di-nitrogen to ammonia. The symbiosis between rhizobia and leguminous plants is a fundamental contributor to nitrogen cycling in natural and agricultural ecosystems. Rhizobial microsymbionts are a major reason why legumes can colonize marginal lands and nitrogen-deficient soils. Several leguminous species have been found in metal-contaminated areas, and they often harbor metal-tolerant rhizobia. In recent years, there have been numerous efforts and discoveries related to the genetic determinants of metal resistance by rhizobia, and on the effectiveness of such rhizobia to increase the metal tolerance of host plants. Here, we review the main findings on the metal resistance of rhizobia: the physiological role, evolution, and genetic determinants, and the potential to use native and genetically-manipulated rhizobia as inoculants for legumes in phytoremediation practices.
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Affiliation(s)
- Camilla Fagorzi
- Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Italy.
| | - Alice Checcucci
- Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Italy.
| | - George C diCenzo
- Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Italy.
| | - Klaudia Debiec-Andrzejewska
- Laboratory of Environmental Pollution Analysis, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland.
| | - Lukasz Dziewit
- Department of Bacterial Genetics, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland.
| | - Francesco Pini
- Department of Agri-food Production and Environmental Science, University of Florence, 50144 Florence, Italy.
| | - Alessio Mengoni
- Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Italy.
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Benedek T, Szentgyörgyi F, Szabó I, Kriszt B, Révész F, Radó J, Maróti G, Táncsics A. Aerobic and oxygen-limited enrichment of BTEX-degrading biofilm bacteria: dominance of Malikia versus Acidovorax species. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:32178-32195. [PMID: 30220065 DOI: 10.1007/s11356-018-3096-6] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Accepted: 08/28/2018] [Indexed: 05/14/2023]
Abstract
Due to their high resistance against environmental challenges, bacterial biofilms are ubiquitous and are frequently associated with undesired phenomena in environmental industry (e. g. biofouling). However, because of the high phylogenetic and functional diversity, bacterial biofilms are important sources of biotechnologically relevant microorganisms, e.g. those showing bioremediation potential. In our previous work, the high phylogenetic and metabolic diversity of a clogging biofilm, developed in a simple aromatic hydrocarbon (BTEX)-contaminated groundwater well was uncovered. The determination of relationships between different groups of biofilm bacteria and certain metabolic traits has been omitted so far. Therefore, by setting up new biofilm-based enrichment microcosms, the research goal of the present study was to identify the aerobic/hypoxic BTEX-degrading and/or prolific biofilm-forming bacteria. The initial bacterial community composition as well as temporal dynamics due to the selective enrichment has been determined. The obtained results indicated that the concentration of dissolved oxygen may be a strong selective force on the evolution and final structure of microbial communities, developed in hydrocarbon-contaminated environments. Accordingly, members of the genus Malikia proved to be the most dominant community members of the aerobic BTEX-degrading enrichments. Acidovorax spp. dominated the oxygen-limited/hypoxic setup. During the study, a strain collection of 23 different bacterial species was obtained. Non-pathogenic members of this strain collection, with outstanding biodegradation (e.g. Pseudomonas, Variovorax isolates) and biofilm-forming potential (e.g. Rhizobium), may potentially be applied in the development of biofilm-based semipermeable reactive biobarriers.
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Affiliation(s)
- Tibor Benedek
- Regional University Centre of Excellence in Environmental Industry, Szent István University, Páter K. u. 1, Gödöllő, H-2100, Hungary.
| | - Flóra Szentgyörgyi
- Department of Environmental Safety and Ecotoxicology, Szent István University, Páter K. u. 1, Gödöllő, H-2100, Hungary
| | - István Szabó
- Department of Environmental Safety and Ecotoxicology, Szent István University, Páter K. u. 1, Gödöllő, H-2100, Hungary
| | - Balázs Kriszt
- Department of Environmental Safety and Ecotoxicology, Szent István University, Páter K. u. 1, Gödöllő, H-2100, Hungary
| | - Fruzsina Révész
- Regional University Centre of Excellence in Environmental Industry, Szent István University, Páter K. u. 1, Gödöllő, H-2100, Hungary
| | - Júlia Radó
- Department of Environmental Safety and Ecotoxicology, Szent István University, Páter K. u. 1, Gödöllő, H-2100, Hungary
| | - Gergely Maróti
- Institute of Plant Biology, Biological Research Centre of the Hungarian Academy of Sciences, Temesvári krt. 62, Szeged, Hungary
- Faculty of Agricultural and Economics Studies, Tessedik Campus, Szent István University, Szabadság u. 1-3, Szarvas, H-5530, Hungary
| | - András Táncsics
- Regional University Centre of Excellence in Environmental Industry, Szent István University, Páter K. u. 1, Gödöllő, H-2100, Hungary
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Mixed Intercropping of Wheat and White Clover to Enhance the Sustainability of the Conventional Cropping System: Effects on Biomass Production and Leaching of Mineral Nitrogen. SUSTAINABILITY 2018. [DOI: 10.3390/su10103367] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The main goal of our research was to compare the mixed intercropping (MC) of winter wheat (Triticum aestivum) and white clover (Trifolium repens) with the sole cropping of Triticum aestivum, during two growing seasons (2012–2014), in a lysimetric experiment. We aimed to investigate the effect of the above growing system on total biomass production, grain yield and leaching of mineral nitrogen (Nmin). Four variants of intercropping (0 kg N/ha; 112 kg N/ha; 112 kg N/ha + 1.25 L of humic acids/ha; 70 kg N + 0.65 L of humic acids/ha) and two variants of sole cropping (0 kg N/ha; 140 kg N/ha) were used. Research results showed a good potential for growing wheat in the mixed cropping system without any negative effect on grain and total biomass production. No significant differences were found between the variants where winter wheat was grown with white clover (70 and 112 kg N/ha), and variants with sole wheat (140 kg N/ha), in both years of the experiment. The loss of Nmin from the soil was affected by the application of N fertilizer and mixed intercropping system. During the experiment, the loss of Nmin was higher by 20% in the variant using the sole winter wheat (140 kg N/ha), than in the MC variants.
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Abdelkrim S, Jebara SH, Saadani O, Chiboub M, Abid G, Jebara M. Effect of Pb-resistant plant growth-promoting rhizobacteria inoculation on growth and lead uptake by Lathyrus sativus. J Basic Microbiol 2018; 58:579-589. [DOI: 10.1002/jobm.201700626] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2017] [Revised: 03/02/2018] [Accepted: 04/20/2018] [Indexed: 11/06/2022]
Affiliation(s)
- Souhir Abdelkrim
- Center of Biotechnology of Borj Cedria; Laboratory of Legumes; Hammam Lif Tunisia
- National Agronomic Institute of Tunisia; University of Carthage; Tunis Tunisia
| | - Salwa H. Jebara
- Center of Biotechnology of Borj Cedria; Laboratory of Legumes; Hammam Lif Tunisia
| | - Omar Saadani
- Center of Biotechnology of Borj Cedria; Laboratory of Legumes; Hammam Lif Tunisia
| | - Manel Chiboub
- Center of Biotechnology of Borj Cedria; Laboratory of Legumes; Hammam Lif Tunisia
| | - Ghassen Abid
- Center of Biotechnology of Borj Cedria; Laboratory of Legumes; Hammam Lif Tunisia
| | - Moez Jebara
- Center of Biotechnology of Borj Cedria; Laboratory of Legumes; Hammam Lif Tunisia
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Garris HW, Baldwin SA, Taylor J, Gurr DB, Denesiuk DR, Van Hamme JD, Fraser LH. Short-term microbial effects of a large-scale mine-tailing storage facility collapse on the local natural environment. PLoS One 2018; 13:e0196032. [PMID: 29694379 PMCID: PMC5918821 DOI: 10.1371/journal.pone.0196032] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Accepted: 04/05/2018] [Indexed: 11/18/2022] Open
Abstract
We investigated the impacts of the Mount Polley tailings impoundment failure on chemical, physical, and microbial properties of substrates within the affected watershed, comprised of 70 hectares of riparian wetlands and 40 km of stream and lake shore. We established a biomonitoring network in October of 2014, two months following the disturbance, and evaluated riparian and wetland substrates for microbial community composition and function via 16S and full metagenome sequencing. A total of 234 samples were collected from substrates at 3 depths and 1,650,752 sequences were recorded in a geodatabase framework. These data revealed a wealth of information regarding watershed-scale distribution of microbial community members, as well as community composition, structure, and response to disturbance. Substrates associated with the impact zone were distinct chemically as indicated by elevated pH, nitrate, and sulphate. The microbial community exhibited elevated metabolic capacity for selenate and sulfate reduction and an abundance of chemolithoautotrophs in the Thiobacillus thiophilus/T. denitrificans/T. thioparus clade that may contribute to nitrate attenuation within the affected watershed. The most impacted area (a 6 km stream connecting two lakes) exhibited 30% lower microbial diversity relative to the remaining sites. The tailings impoundment failure at Mount Polley Mine has provided a unique opportunity to evaluate functional and compositional diversity soon after a major catastrophic disturbance to assess metabolic potential for ecosystem recovery.
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Affiliation(s)
- Heath W. Garris
- Departments of Natural Resource Sciences & Biological Sciences, Thompson Rivers University, Kamloops, British Columbia, Canada
- * E-mail:
| | - Susan A. Baldwin
- Department of Chemical and Biological Engineering, University of British Columbia, Vancouver, British Columbia, Canada
| | - Jon Taylor
- Department of Chemical and Biological Engineering, University of British Columbia, Vancouver, British Columbia, Canada
| | - David B. Gurr
- Department of Chemical and Biological Engineering, University of British Columbia, Vancouver, British Columbia, Canada
| | - Daniel R. Denesiuk
- Departments of Natural Resource Sciences & Biological Sciences, Thompson Rivers University, Kamloops, British Columbia, Canada
| | - Jonathan D. Van Hamme
- Departments of Natural Resource Sciences & Biological Sciences, Thompson Rivers University, Kamloops, British Columbia, Canada
| | - Lauchlan H. Fraser
- Departments of Natural Resource Sciences & Biological Sciences, Thompson Rivers University, Kamloops, British Columbia, Canada
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Wang X, Teng Y, Tu C, Luo Y, Greening C, Zhang N, Dai S, Ren W, Zhao L, Li Z. Coupling between Nitrogen Fixation and Tetrachlorobiphenyl Dechlorination in a Rhizobium-Legume Symbiosis. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:2217-2224. [PMID: 29363956 DOI: 10.1021/acs.est.7b05667] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Legume-rhizobium symbioses have the potential to remediate soils contaminated with chlorinated organic compounds. Here, the model symbiosis between Medicago sativa and Sinorhizobium meliloti was used to explore the relationships between symbiotic nitrogen fixation and transformation of tetrachlorobiphenyl PCB 77 within this association. 45-day-old seedlings in vermiculite were pretreated with 5 mg L-1 PCB 77 for 5 days. In PCB-supplemented nodules, addition of the nitrogenase enhancer molybdate significantly stimulated dechlorination by 7.2-fold and reduced tissue accumulation of PCB 77 (roots by 96% and nodules by 93%). Conversely, dechlorination decreased in plants exposed to a nitrogenase inhibitor (nitrate) or harboring nitrogenase-deficient symbionts (nifA mutant) by 29% and 72%, respectively. A range of dechlorinated products (biphenyl, methylbiphenyls, hydroxylbiphenyls, and trichlorobiphenyl derivatives) were detected within nodules and roots under nitrogen-fixing conditions. Levels of nitrogenase-derived hydrogen and leghemoglobin expression correlated positively with nodular dechlorination rates, suggesting a more reducing environment promotes PCB dechlorination. Our findings demonstrate for the first time that symbiotic nitrogen fixation acts as a driving force for tetrachlorobiphenyl dechlorination. In turn, this opens new possibilities for using rhizobia to enhance phytoremediation of halogenated organic compounds.
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Affiliation(s)
- Xiaomi Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science , Chinese Academy of Sciences, Nanjing 210008, P.R. China
- University of Chinese Academy of Sciences , Beijing 100049, P.R. China
| | - Ying Teng
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science , Chinese Academy of Sciences, Nanjing 210008, P.R. China
| | - Chen Tu
- Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research , Chinese Academy of Sciences, Yantai 264003, P.R. China
| | - Yongming Luo
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science , Chinese Academy of Sciences, Nanjing 210008, P.R. China
- Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research , Chinese Academy of Sciences, Yantai 264003, P.R. China
| | - Chris Greening
- School of Biological Sciences, Monash University , Clayton, Victoria 3800, Australia
| | - Ning Zhang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science , Chinese Academy of Sciences, Nanjing 210008, P.R. China
| | - Shixiang Dai
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science , Chinese Academy of Sciences, Nanjing 210008, P.R. China
- University of Chinese Academy of Sciences , Beijing 100049, P.R. China
| | - Wenjie Ren
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science , Chinese Academy of Sciences, Nanjing 210008, P.R. China
| | - Ling Zhao
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science , Chinese Academy of Sciences, Nanjing 210008, P.R. China
| | - Zhengao Li
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science , Chinese Academy of Sciences, Nanjing 210008, P.R. China
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Welz PJ, Ramond JB, Braun L, Vikram S, Le Roes-Hill M. Bacterial nitrogen fixation in sand bioreactors treating winery wastewater with a high carbon to nitrogen ratio. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2018; 207:192-202. [PMID: 29179109 DOI: 10.1016/j.jenvman.2017.11.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2017] [Revised: 10/20/2017] [Accepted: 11/05/2017] [Indexed: 06/07/2023]
Abstract
Heterotrophic bacteria proliferate in organic-rich environments and systems containing sufficient essential nutrients. Nitrogen, phosphorus and potassium are the nutrients required in the highest concentrations. The ratio of carbon to nitrogen is an important consideration for wastewater bioremediation because insufficient nitrogen may result in decreased treatment efficiency. It has been shown that during the treatment of effluent from the pulp and paper industry, bacterial nitrogen fixation can supplement the nitrogen requirements of suspended growth systems. This study was conducted using physicochemical analyses and culture-dependent and -independent techniques to ascertain whether nitrogen-fixing bacteria were selected in biological sand filters used to treat synthetic winery wastewater with a high carbon to nitrogen ratio (193:1). The systems performed well, with the influent COD of 1351 mg/L being reduced by 84-89%. It was shown that the nitrogen fixing bacterial population was influenced by the presence of synthetic winery effluent in the surface layers of the biological sand filters, but not in the deeper layers. It was hypothesised that this was due to the greater availability of atmospheric nitrogen at the surface. The numbers of culture-able nitrogen-fixing bacteria, including presumptive Azotobacter spp. exhibited 1-2 log increases at the surface. The results of this study confirm that nitrogen fixation is an important mechanism to be considered during treatment of high carbon to nitrogen wastewater. If biological treatment systems can be operated to stimulate this phenomenon, it may obviate the need for nitrogen addition.
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Affiliation(s)
- Pamela J Welz
- Biocatalysis and Technical Biology Research Group, Institute for Medical and Microbial Biotechnology, Cape Peninsula University of Technology, Cape Town, South Africa.
| | - Jean-Baptiste Ramond
- Centre for Microbial Ecology and Genomics, Department of Genetics, University of Pretoria, Pretoria, South Africa
| | - Lorenz Braun
- Biocatalysis and Technical Biology Research Group, Institute for Medical and Microbial Biotechnology, Cape Peninsula University of Technology, Cape Town, South Africa
| | - Surendra Vikram
- Centre for Microbial Ecology and Genomics, Department of Genetics, University of Pretoria, Pretoria, South Africa
| | - Marilize Le Roes-Hill
- Biocatalysis and Technical Biology Research Group, Institute for Medical and Microbial Biotechnology, Cape Peninsula University of Technology, Cape Town, South Africa
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Oh S, Hammes F, Liu WT. Metagenomic characterization of biofilter microbial communities in a full-scale drinking water treatment plant. WATER RESEARCH 2018; 128:278-285. [PMID: 29107912 DOI: 10.1016/j.watres.2017.10.054] [Citation(s) in RCA: 77] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Revised: 10/25/2017] [Accepted: 10/25/2017] [Indexed: 05/08/2023]
Abstract
Microorganisms inhabiting filtration media of a drinking water treatment plant can be beneficial, because they metabolize biodegradable organic matter from source waters and those formed during disinfection processes, leading to the production of biologically stable drinking water. However, which microbial consortia colonize filters and what metabolic capacity they possess remain to be investigated. To gain insights into these issues, we performed metagenome sequencing and analysis of microbial communities in three different filters of a full-scale drinking water treatment plant (DWTP). Filter communities were sampled from a rapid sand filter (RSF), granular activated carbon filter (GAC), and slow sand filter (SSF), and from the Schmutzdecke (SCM, a biologically active scum layer accumulated on top of SSF), respectively. Analysis of community phylogenetic structure revealed that the filter bacterial communities significantly differed from those in the source water and final effluent communities, respectively. Network analysis identified a filter-specific colonization pattern of bacterial groups. Bradyrhizobiaceae were abundant in GAC, whereas Nitrospira were enriched in the sand-associated filters (RSF, SCM, and SSF). The GAC community was enriched with functions associated with aromatics degradation, many of which were encoded by Rhizobiales (∼30% of the total GAC community). Predicting minimum generation time (MGT) of prokaryotic communities suggested that the GAC community potentially select fast-growers (<15 h of MGT) among the four filter communities, consistent with the highest dissolved organic matter removal rate by GAC. Our findings provide new insights into the community phylogenetic structure, colonization pattern, and metabolic capacity that potentially contributes to organic matter removal achieved in the biofiltration stages of the full-scale DWTP.
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Affiliation(s)
- Seungdae Oh
- Department of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Department of Civil Engineering, Kyung Hee University, Yongin-si, Gyeonggi-do, Republic of Korea
| | - Frederik Hammes
- Eawag, Swiss Federal Institute for Aquatic Science and Technology, Überlandstr. 133, CH-8600 Dübendorf, Switzerland
| | - Wen-Tso Liu
- Department of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
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49
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Jaiswal SK, Naamala J, Dakora FD. Nature and mechanisms of aluminium toxicity, tolerance and amelioration in symbiotic legumes and rhizobia. BIOLOGY AND FERTILITY OF SOILS 2018; 54:309-318. [PMID: 31258230 PMCID: PMC6560468 DOI: 10.1007/s00374-018-1262-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2017] [Revised: 12/14/2017] [Accepted: 01/01/2018] [Indexed: 05/18/2023]
Abstract
Recent findings on the effect of aluminium (Al) on the functioning of legumes and their associated microsymbionts are reviewed here. Al represents 7% of solid matter in the Earth's crust and is an important abiotic factor that alters microbial and plant functioning at very early stages. The trivalent Al (Al3+) dominates at pH < 5 in soils and becomes a constraint to legume productivity through its lethal effect on rhizobia, the host plant and their interaction. Al3+ has lethal effects on many aspects of the rhizobia/legume symbiosis, which include a decrease in root elongation and root hair formation, lowered soil rhizobial population, and suppression of nitrogen metabolism involving nitrate reduction, nitrite reduction, nitrogenase activity and the functioning of uptake of hydrogenases (Hup), ultimately impairing the N2 fixation process. At the molecular level, Al is known to suppress the expression of nodulation genes in symbiotic rhizobia, as well as the induction of genes for the formation of hexokinase, phosphodiesterase, phosphooxidase and acid/alkaline phosphatase. Al toxicity can also induce the accumulation of reactive oxygen species and callose, in addition to lipoperoxidation in the legume root elongation zone. Al tolerance in plants can be achieved through over-expression of citrate synthase gene in roots and/or the synthesis and release of organic acids that reverse Al-induced changes in proteins, as well as metabolic regulation by plant-secreted microRNAs. In contrast, Al tolerance in symbiotic rhizobia is attained via the production of exopolysaccharides, the synthesis of siderophores that reduce Al uptake, induction of efflux pumps resistant to heavy metals and the expression of metal-inducible (dmeRF) gene clusters in symbiotic Rhizobiaceae. In soils, Al toxicity is usually ameliorated through liming, organic matter supply and use of Al-tolerant species. Our current understanding of crop productivity in high Al soils suggests that a much greater future accumulation of Al is likely to occur in agricultural soils globally if crop irrigation is increased under a changing climate.
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Affiliation(s)
- Sanjay K. Jaiswal
- Department of Chemistry, Tshwane University of Technology, Arcadia campus, 175 Nelson Mandela Drive, Private Bag X680, Pretoria, 0001 South Africa
| | - Judith Naamala
- Department of Crop Sciences, Tshwane University of Technology, Arcadia campus, 175 Nelson Mandela Drive, Private Bag X680, Pretoria, 0001 South Africa
| | - Felix D. Dakora
- Department of Chemistry, Tshwane University of Technology, Arcadia campus, 175 Nelson Mandela Drive, Private Bag X680, Pretoria, 0001 South Africa
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50
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Chen Z, Zheng Y, Ding C, Ren X, Yuan J, Sun F, Li Y. Integrated metagenomics and molecular ecological network analysis of bacterial community composition during the phytoremediation of cadmium-contaminated soils by bioenergy crops. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2017; 145:111-118. [PMID: 28711820 DOI: 10.1016/j.ecoenv.2017.07.019] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Revised: 07/06/2017] [Accepted: 07/10/2017] [Indexed: 06/07/2023]
Abstract
Two energy crops (maize and soybean) were used in the remediation of cadmium-contaminated soils. These crops were used because they are fast growing, have a large biomass and are good sources for bioenergy production. The total accumulation of cadmium in maize and soybean plants was 393.01 and 263.24μg pot-1, respectively. The rhizosphere bacterial community composition was studied by MiSeq sequencing. Phylogenetic analysis was performed using 16S rRNA gene sequences. The rhizosphere bacteria were divided into 33 major phylogenetic groups according to phyla. The dominant phylogenetic groups included Proteobacteria, Acidobacteria, Actinobacteria, Gemmatimonadetes, and Bacteroidetes. Based on principal component analysis (PCA) and unweighted pair group with arithmetic mean (UPGMA) analysis, we found that the bacterial community was influenced by cadmium addition and bioenergy cropping. Three molecular ecological networks were constructed for the unplanted, soybean- and maize-planted bacterial communities grown in 50mgkg-1 cadmium-contaminated soils. The results indicated that bioenergy cropping increased the complexity of the bacterial community network as evidenced by a higher total number of nodes, the average geodesic distance (GD), the modularity and a shorter geodesic distance. Proteobacteria and Acidobacteria were the keystone bacteria connecting different co-expressed operational taxonomic units (OTUs). The results showed that bioenergy cropping altered the topological roles of individual OTUs and keystone populations. This is the first study to reveal the effects of bioenergy cropping on microbial interactions in the phytoremediation of cadmium-contaminated soils by network reconstruction. This method can greatly enhance our understanding of the mechanisms of plant-microbe-metal interactions in metal-polluted ecosystems.
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Affiliation(s)
- Zhaojin Chen
- Key Laboratory of Ecological Security for Water Source Region of Mid-line Project of South-to-North Diversion Project of Henan Province, College of Agricultural Engineering, Nanyang Normal University, Nanyang 473061, People's Republic of China; Henan Collaborative Innovation Center of Water Security for Water Source Region of Mid-line Project of South-to-North Diversion Project, Nanyang 473061, People's Republic of China.
| | - Yuan Zheng
- Key Laboratory of Ecological Security for Water Source Region of Mid-line Project of South-to-North Diversion Project of Henan Province, College of Agricultural Engineering, Nanyang Normal University, Nanyang 473061, People's Republic of China; Henan Collaborative Innovation Center of Water Security for Water Source Region of Mid-line Project of South-to-North Diversion Project, Nanyang 473061, People's Republic of China
| | - Chuanyu Ding
- Key Laboratory of Ecological Security for Water Source Region of Mid-line Project of South-to-North Diversion Project of Henan Province, College of Agricultural Engineering, Nanyang Normal University, Nanyang 473061, People's Republic of China; Henan Collaborative Innovation Center of Water Security for Water Source Region of Mid-line Project of South-to-North Diversion Project, Nanyang 473061, People's Republic of China
| | - Xuemin Ren
- Key Laboratory of Ecological Security for Water Source Region of Mid-line Project of South-to-North Diversion Project of Henan Province, College of Agricultural Engineering, Nanyang Normal University, Nanyang 473061, People's Republic of China; Henan Collaborative Innovation Center of Water Security for Water Source Region of Mid-line Project of South-to-North Diversion Project, Nanyang 473061, People's Republic of China
| | - Jian Yuan
- Key Laboratory of Ecological Security for Water Source Region of Mid-line Project of South-to-North Diversion Project of Henan Province, College of Agricultural Engineering, Nanyang Normal University, Nanyang 473061, People's Republic of China; Henan Collaborative Innovation Center of Water Security for Water Source Region of Mid-line Project of South-to-North Diversion Project, Nanyang 473061, People's Republic of China
| | - Feng Sun
- Key Laboratory of Ecological Security for Water Source Region of Mid-line Project of South-to-North Diversion Project of Henan Province, College of Agricultural Engineering, Nanyang Normal University, Nanyang 473061, People's Republic of China; Henan Collaborative Innovation Center of Water Security for Water Source Region of Mid-line Project of South-to-North Diversion Project, Nanyang 473061, People's Republic of China
| | - Yuying Li
- Key Laboratory of Ecological Security for Water Source Region of Mid-line Project of South-to-North Diversion Project of Henan Province, College of Agricultural Engineering, Nanyang Normal University, Nanyang 473061, People's Republic of China; Henan Collaborative Innovation Center of Water Security for Water Source Region of Mid-line Project of South-to-North Diversion Project, Nanyang 473061, People's Republic of China
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