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Rimal S, Shrestha S, Paudel SW, Shah Y, Bhandari G, Pandey K, Kharbuja A, Kapandji M, Gautam I, Bhujel R, Takamatsu Y, Bhandari R, Klungthong C, Shrestha SK, Fernandez S, Malavige GN, Pandey BD, Urano T, Morita K, Ngwe Tun MM, Dumre SP. Molecular and Entomological Characterization of 2023 Dengue Outbreak in Dhading District, Central Nepal. Viruses 2024; 16:594. [PMID: 38675935 PMCID: PMC11053854 DOI: 10.3390/v16040594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 04/07/2024] [Accepted: 04/09/2024] [Indexed: 04/28/2024] Open
Abstract
In 2023, Nepal faced its second largest dengue outbreak ever, following a record-breaking number of dengue cases in 2022, characterized by the expansion of infections into areas of higher altitudes. However, the characteristics of the 2023 circulating dengue virus (DENV) and the vector density remain poorly understood. Therefore, we performed DENV serotyping, clinical and laboratory assessment, and entomological analysis of the 2023 outbreak in central Nepal. A total of 396 fever cases in Dhading hospital suspected of being DENV positive were enrolled, and blood samples were collected and tested by different techniques including PCR. Of these, 278 (70.2%) had confirmed DENV infection. Multiple serotypes (DENV-1, -2, and -3) were detected. DENV-2 (97.5%) re-emerged after six years in Dhading while DENV-3 was identified for the first time. Dengue inpatients had significantly higher frequency of anorexia, myalgia, rash, diarrhea, nausea, vomiting, abdominal pain, and thrombocytopenia (p < 0.05). In this area, Aedes mosquitoes largely predominated (90.7%) with the majority being A. aegypti (60.7%). We also found high levels of Aedes index (20.0%) and container index (16.7%). We confirmed multiple DENV serotype circulation with serotype re-emergence and new serotype introduction, and high vector density in 2023. These findings call for the urgent initiation and scaling up of DENV molecular surveillance in human and mosquito populations for dengue control and prevention in Nepal.
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Affiliation(s)
- Sandesh Rimal
- Central Department of Microbiology, Tribhuvan University, Kathmandu 44601, Nepal; (S.R.); (S.S.); (A.K.); (R.B.)
| | - Sabin Shrestha
- Central Department of Microbiology, Tribhuvan University, Kathmandu 44601, Nepal; (S.R.); (S.S.); (A.K.); (R.B.)
| | | | | | - Govinda Bhandari
- Dhading Hospital, Dhading Besi 45100, Nepal; (S.W.P.); (G.B.); (R.B.)
| | - Kishor Pandey
- Central Department of Zoology, Tribhuvan University, Kathmandu 44601, Nepal;
| | - Anjana Kharbuja
- Central Department of Microbiology, Tribhuvan University, Kathmandu 44601, Nepal; (S.R.); (S.S.); (A.K.); (R.B.)
| | - Merveille Kapandji
- Department of Virology, Institute of Tropical Medicine, Nagasaki University, Nagasaki 852-8523, Japan; (M.K.); (Y.T.); (K.M.)
| | - Ishan Gautam
- Natural History Museum, Tribhuvan University, Swayambhu, Kathmandu 44620, Nepal;
| | - Rajshree Bhujel
- Central Department of Microbiology, Tribhuvan University, Kathmandu 44601, Nepal; (S.R.); (S.S.); (A.K.); (R.B.)
| | - Yuki Takamatsu
- Department of Virology, Institute of Tropical Medicine, Nagasaki University, Nagasaki 852-8523, Japan; (M.K.); (Y.T.); (K.M.)
| | | | - Chonticha Klungthong
- Armed Forces Research Institute of Medical Sciences, Bangkok 10400, Thailand; (C.K.); (S.F.)
| | | | - Stefan Fernandez
- Armed Forces Research Institute of Medical Sciences, Bangkok 10400, Thailand; (C.K.); (S.F.)
| | | | - Basu Dev Pandey
- DEJIMA Infectious Disease Research Alliance, Nagasaki University, Nagasaki 852-8523, Japan; (B.D.P.); (T.U.)
| | - Takeshi Urano
- DEJIMA Infectious Disease Research Alliance, Nagasaki University, Nagasaki 852-8523, Japan; (B.D.P.); (T.U.)
| | - Kouichi Morita
- Department of Virology, Institute of Tropical Medicine, Nagasaki University, Nagasaki 852-8523, Japan; (M.K.); (Y.T.); (K.M.)
- DEJIMA Infectious Disease Research Alliance, Nagasaki University, Nagasaki 852-8523, Japan; (B.D.P.); (T.U.)
- Center for Vaccines and Therapeutic Antibodies for Emerging Infectious Diseases, Shimane University, Izumo 690-8504, Japan
- Department of Tropical Viral Vaccine Development, Institute of Tropical Medicine, Nagasaki University, Nagasaki 852-8523, Japan
| | - Mya Myat Ngwe Tun
- Department of Virology, Institute of Tropical Medicine, Nagasaki University, Nagasaki 852-8523, Japan; (M.K.); (Y.T.); (K.M.)
- DEJIMA Infectious Disease Research Alliance, Nagasaki University, Nagasaki 852-8523, Japan; (B.D.P.); (T.U.)
- Center for Vaccines and Therapeutic Antibodies for Emerging Infectious Diseases, Shimane University, Izumo 690-8504, Japan
- Department of Tropical Viral Vaccine Development, Institute of Tropical Medicine, Nagasaki University, Nagasaki 852-8523, Japan
| | - Shyam Prakash Dumre
- Central Department of Microbiology, Tribhuvan University, Kathmandu 44601, Nepal; (S.R.); (S.S.); (A.K.); (R.B.)
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Pakaya R, Daniel D, Widayani P, Utarini A. Spatial model of Dengue Hemorrhagic Fever (DHF) risk: scoping review. BMC Public Health 2023; 23:2448. [PMID: 38062404 PMCID: PMC10701958 DOI: 10.1186/s12889-023-17185-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2023] [Accepted: 11/08/2023] [Indexed: 12/18/2023] Open
Abstract
BACKGROUND Creating a spatial model of dengue fever risk is challenging duet to many interrelated factors that could affect dengue. Therefore, it is crucial to understand how these critical factors interact and to create reliable predictive models that can be used to mitigate and control the spread of dengue. METHODS This scoping review aims to provide a comprehensive overview of the important predictors, and spatial modelling tools capable of producing Dengue Haemorrhagic Fever (DHF) risk maps. We conducted a methodical exploration utilizing diverse sources, i.e., PubMed, Scopus, Science Direct, and Google Scholar. The following data were extracted from articles published between January 2011 to August 2022: country, region, administrative level, type of scale, spatial model, dengue data use, and categories of predictors. Applying the eligibility criteria, 45 out of 1,349 articles were selected. RESULTS A variety of models and techniques were used to identify DHF risk areas with an arrangement of various multiple-criteria decision-making, statistical, and machine learning technique. We found that there was no pattern of predictor use associated with particular approaches. Instead, a wide range of predictors was used to create the DHF risk maps. These predictors may include climatology factors (e.g., temperature, rainfall, humidity), epidemiological factors (population, demographics, socio-economic, previous DHF cases), environmental factors (land-use, elevation), and relevant factors. CONCLUSIONS DHF risk spatial models are useful tools for detecting high-risk locations and driving proactive public health initiatives. Relying on geographical and environmental elements, these models ignored the impact of human behaviour and social dynamics. To improve the prediction accuracy, there is a need for a more comprehensive approach to understand DHF transmission dynamics.
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Affiliation(s)
- Ririn Pakaya
- Doctoral Program in Public Health, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia.
- Department of Public Health, Public Health Faculty, Universitas Gorontalo, Gorontalo, Indonesia.
| | - D Daniel
- Department of Health Behaviour, Environment and Social Medicine, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia
| | - Prima Widayani
- Department of Geographic Information Science, Faculty of Geography, Universitas Gadjah Mada, Yogyakarta, Indonesia
| | - Adi Utarini
- Doctoral Program in Public Health, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia
- Department of Health Policy and Management, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia
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Lim AY, Jafari Y, Caldwell JM, Clapham HE, Gaythorpe KAM, Hussain-Alkhateeb L, Johansson MA, Kraemer MUG, Maude RJ, McCormack CP, Messina JP, Mordecai EA, Rabe IB, Reiner RC, Ryan SJ, Salje H, Semenza JC, Rojas DP, Brady OJ. A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk. BMC Infect Dis 2023; 23:708. [PMID: 37864153 PMCID: PMC10588093 DOI: 10.1186/s12879-023-08717-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 10/16/2023] [Indexed: 10/22/2023] Open
Abstract
BACKGROUND Aedes (Stegomyia)-borne diseases are an expanding global threat, but gaps in surveillance make comprehensive and comparable risk assessments challenging. Geostatistical models combine data from multiple locations and use links with environmental and socioeconomic factors to make predictive risk maps. Here we systematically review past approaches to map risk for different Aedes-borne arboviruses from local to global scales, identifying differences and similarities in the data types, covariates, and modelling approaches used. METHODS We searched on-line databases for predictive risk mapping studies for dengue, Zika, chikungunya, and yellow fever with no geographical or date restrictions. We included studies that needed to parameterise or fit their model to real-world epidemiological data and make predictions to new spatial locations of some measure of population-level risk of viral transmission (e.g. incidence, occurrence, suitability, etc.). RESULTS We found a growing number of arbovirus risk mapping studies across all endemic regions and arboviral diseases, with a total of 176 papers published 2002-2022 with the largest increases shortly following major epidemics. Three dominant use cases emerged: (i) global maps to identify limits of transmission, estimate burden and assess impacts of future global change, (ii) regional models used to predict the spread of major epidemics between countries and (iii) national and sub-national models that use local datasets to better understand transmission dynamics to improve outbreak detection and response. Temperature and rainfall were the most popular choice of covariates (included in 50% and 40% of studies respectively) but variables such as human mobility are increasingly being included. Surprisingly, few studies (22%, 31/144) robustly tested combinations of covariates from different domains (e.g. climatic, sociodemographic, ecological, etc.) and only 49% of studies assessed predictive performance via out-of-sample validation procedures. CONCLUSIONS Here we show that approaches to map risk for different arboviruses have diversified in response to changing use cases, epidemiology and data availability. We identify key differences in mapping approaches between different arboviral diseases, discuss future research needs and outline specific recommendations for future arbovirus mapping.
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Affiliation(s)
- Ah-Young Lim
- Department of Infectious Disease Epidemiology and Dynamics, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK.
- Centre for Mathematical Modelling of Infectious Diseases, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK.
| | - Yalda Jafari
- Mahidol Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK
| | - Jamie M Caldwell
- High Meadows Environmental Institute, Princeton University, Princeton, NJ, USA
| | - Hannah E Clapham
- Saw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore, Singapore
| | - Katy A M Gaythorpe
- MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College London, London, UK
| | - Laith Hussain-Alkhateeb
- School of Public Health and Community Medicine, Sahlgrenska Academy, Institute of Medicine, Global Health, University of Gothenburg, Gothenburg, Sweden
- Population Health Research Section, King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
| | - Michael A Johansson
- Dengue Branch, Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, San Juan, Puerto Rico, USA
| | | | - Richard J Maude
- Mahidol Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK
| | - Clare P McCormack
- MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College London, London, UK
| | - Jane P Messina
- School of Geography and the Environment, University of Oxford, Oxford, UK
- Oxford School of Global and Area Studies, University of Oxford, Oxford, UK
| | - Erin A Mordecai
- Department of Biology, Stanford University, Stanford, CA, USA
| | - Ingrid B Rabe
- Department of Epidemic and Pandemic Preparedness and Prevention, World Health Organization, Geneva, Switzerland
| | - Robert C Reiner
- Institute for Health Metrics and Evaluation, University of Washington, Seattle, WA, USA
- Department of Health Metrics Sciences, School of Medicine, University of Washington, Seattle, WA, USA
| | - Sadie J Ryan
- Department of Geography and Emerging Pathogens Institute, University of Florida, Gainesville, FL, USA
| | - Henrik Salje
- Department of Genetics, University of Cambridge, Cambridge, UK
| | - Jan C Semenza
- Department of Public Health and Clinical Medicine, Section of Sustainable Health, Umeå University, Umeå, Sweden
| | - Diana P Rojas
- Department of Epidemic and Pandemic Preparedness and Prevention, World Health Organization, Geneva, Switzerland
| | - Oliver J Brady
- Department of Infectious Disease Epidemiology and Dynamics, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK
- Centre for Mathematical Modelling of Infectious Diseases, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK
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Accoti A, Becker M, Abu AEI, Vulcan J, Yun R, Widen S, Sylla M, Popov VL, Weaver SC, Dickson LB. Dehydration induced AePer50 regulates midgut infection in Ae. aegypti. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.10.11.561962. [PMID: 37873391 PMCID: PMC10592720 DOI: 10.1101/2023.10.11.561962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
Abstract
In the face of climate change, mosquitoes will experience evolving climates including longer periods of drought. An important physiological response to dry environments is the protection against water loss or dehydration, here defined as desiccation tolerance. Various environmental factors including temperature are known to alter interactions between the mosquito, Aedes aegypti , and the arboviruses it transmits, but little is known about how low humidity impacts arboviral infection. Here, we report that a gene upregulated in response to desiccation is important for controlling midgut infection. We have identified two genetically diverse lines of Ae. aegypti with marked differences in desiccation tolerance. To understand if the genetic basis underlying desiccation tolerance is the same between the contrasting lines, we compared gene expression profiles between desiccant treated and non-desiccant treated individuals in both the desiccation tolerant and susceptible lines by RNAseq. Gene expression analysis demonstrates that different genes are differentially expressed in response to desiccation stress between desiccation tolerant and susceptible lines. The most highly expressed transcript under desiccation stress in the desiccation susceptible line encodes a peritrophin protein, Ae Per50. Peritrophins play a crucial role in peritrophic matrix formation after a bloodmeal. Gene silencing of Ae Per50 by RNAi demonstrates that expression of Ae Per50 is required for survival of the desiccation susceptible line under desiccation stress, but not for the desiccation tolerant line. Moreover, the knockdown of Ae Per50 results in higher infection rates and viral replication rates of ZIKV and higher infection rates of CHIKV. Finally, following a bloodmeal, the desiccation susceptible line develops a thicker peritrophic matrix than the desiccation tolerant line. Together these results provide a functional link between the protection against desiccation and midgut infection which has important implications in predicting how climate change will impact mosquito-borne viruses.
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Lin X, Geng R, Menke K, Edelson M, Yan F, Leong T, Rust GS, Waller LA, Johnson EL, Cheng Immergluck L. Machine learning to predict risk for community-onset Staphylococcus aureus infections in children living in southeastern United States. PLoS One 2023; 18:e0290375. [PMID: 37656705 PMCID: PMC10473480 DOI: 10.1371/journal.pone.0290375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Accepted: 08/07/2023] [Indexed: 09/03/2023] Open
Abstract
Staphylococcus aureus (S. aureus) is known to cause human infections and since the late 1990s, community-onset antibiotic resistant infections (methicillin resistant S. aureus (MRSA)) continue to cause significant infections in the United States. Skin and soft tissue infections (SSTIs) still account for the majority of these in the outpatient setting. Machine learning can predict the location-based risks for community-level S. aureus infections. Multi-year (2002-2016) electronic health records of children <19 years old with S. aureus infections were queried for patient level data for demographic, clinical, and laboratory information. Area level data (Block group) was abstracted from U.S. Census data. A machine learning ecological niche model, maximum entropy (MaxEnt), was applied to assess model performance of specific place-based factors (determined a priori) associated with S. aureus infections; analyses were structured to compare methicillin resistant (MRSA) against methicillin sensitive S. aureus (MSSA) infections. Differences in rates of MRSA and MSSA infections were determined by comparing those which occurred in the early phase (2002-2005) and those in the later phase (2006-2016). Multi-level modeling was applied to identify risks factors for S. aureus infections. Among 16,124 unique patients with community-onset MRSA and MSSA, majority occurred in the most densely populated neighborhoods of Atlanta's metropolitan area. MaxEnt model performance showed the training AUC ranged from 0.771 to 0.824, while the testing AUC ranged from 0.769 to 0.839. Population density was the area variable which contributed the most in predicting S. aureus disease (stratified by CO-MRSA and CO-MSSA) across early and late periods. Race contributed more to CO-MRSA prediction models during the early and late periods than for CO-MSSA. Machine learning accurately predicts which densely populated areas are at highest and lowest risk for community-onset S. aureus infections over a 14-year time span.
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Affiliation(s)
- Xiting Lin
- Morehouse School of Medicine, Department of Microbiology/Biochemistry/Immunology and Clinical Research Center, Atlanta, Georgia, United States of America
| | - Ruijin Geng
- Morehouse School of Medicine, Department of Microbiology/Biochemistry/Immunology and Clinical Research Center, Atlanta, Georgia, United States of America
| | | | - Mike Edelson
- InterDev, Roswell, Georgia, United States of America
| | - Fengxia Yan
- Morehouse School of Medicine, Department of Community Health and Preventive Medicine, Atlanta, Georgia, United States of America
| | - Traci Leong
- Emory University, Rollins School of Public Health, Department of Biostatistics & Bioinformatics, Atlanta, Georgia, United States of America
| | - George S. Rust
- College of Medicine, and Center for Medicine and Public Health, Florida State University, Tallahassee, Florida, United States of America
| | - Lance A. Waller
- Emory University, Rollins School of Public Health, Department of Biostatistics & Bioinformatics, Atlanta, Georgia, United States of America
| | - Erica L. Johnson
- Morehouse School of Medicine, Department of Microbiology/Biochemistry/Immunology and Clinical Research Center, Atlanta, Georgia, United States of America
| | - Lilly Cheng Immergluck
- Morehouse School of Medicine, Department of Microbiology/Biochemistry/Immunology and Clinical Research Center, Atlanta, Georgia, United States of America
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Saeed A, Ali S, Khan F, Muhammad S, Reboita MS, Khan AW, Goheer MA, Khan MA, Kumar R, Ikram A, Jabeen A, Pongpanich S. Modelling the impact of climate change on dengue outbreaks and future spatiotemporal shift in Pakistan. ENVIRONMENTAL GEOCHEMISTRY AND HEALTH 2023; 45:3489-3505. [PMID: 36367603 DOI: 10.1007/s10653-022-01429-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 10/31/2022] [Indexed: 06/01/2023]
Abstract
Climate change has a significant impact on the intensity and spread of dengue outbreaks. The objective of this study is to assess the number of dengue transmission suitable days (DTSD) in Pakistan for the baseline (1976-2005) and future (2006-2035, 2041-2070, and 2071-2099) periods under Representative Concentration Pathway (RCP4.5 and RCP8.5) scenarios. Moreover, potential spatiotemporal shift and future hotspots of DTSD due to climate change were also identified. The analysis is based on fourteen CMIP5 models that have been downscaled and bias-corrected with quantile delta mapping technique, which addresses data stationarity constraints while preserving future climate signal. The results show a higher DTSD during the monsoon season in the baseline in the study area except for Sindh (SN) and South Punjab (SP). In future periods, there is a temporal shift (extension) towards pre- and post-monsoon. During the baseline period, the top ten hotspot cities with a higher frequency of DTSD are Karachi, Hyderabad, Sialkot, Jhelum, Lahore, Islamabad, Balakot, Peshawar, Kohat, and Faisalabad. However, as a result of climate change, there is an elevation-dependent shift in DTSD to high-altitude cities, e.g. in the 2020s, Kotli, Muzaffarabad, and Drosh; in the 2050s, Garhi Dopatta, Quetta, and Zhob; and in the 2080s, Chitral and Bunji. Karachi, Islamabad, and Balakot will remain highly vulnerable to dengue outbreaks for all the future periods of the twenty-first century. Our findings also indicate that DTSD would spread across Pakistan, particularly in areas where we have never seen dengue infections previously. The good news is that the DTSD in current hotspot cities is projected to decrease in the future due to climate change. There is also a temporal shift in the region during the post- and pre-monsoon season, which provides suitable breeding conditions for dengue mosquitos due to freshwater; therefore, local authorities need to take adaption and mitigation actions.
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Affiliation(s)
- Alia Saeed
- Health Services Academy, Islamabad, Pakistan
| | - Shaukat Ali
- Global Change Impact Studies Centre (GCISC), Ministry of Climate Change, Islamabad, Pakistan
| | - Firdos Khan
- School of Natural Sciences (SNS), National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Sher Muhammad
- International Centre for Integrated Mountain Development (ICIMOD), Kathmandu, Nepal
| | | | | | - Muhammad Arif Goheer
- Global Change Impact Studies Centre (GCISC), Ministry of Climate Change, Islamabad, Pakistan
| | | | - Ramesh Kumar
- Health Services Academy, Islamabad, Pakistan.
- College of Public Health Sciences, Chulalongkorn University, Bangkok, Thailand.
| | - Aamer Ikram
- National Institute of Health, Islamabad, Pakistan
| | - Aliya Jabeen
- National Institute of Health, Islamabad, Pakistan
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Rimal S, Shrestha S, Pandey K, Nguyen TV, Bhandari P, Shah Y, Acharya D, Adhikari N, Rijal KR, Ghimire P, Takamatsu Y, Pandey BD, Fernandez S, Morita K, Ngwe Tun MM, Dumre SP. Co-Circulation of Dengue Virus Serotypes 1, 2, and 3 during the 2022 Dengue Outbreak in Nepal: A Cross-Sectional Study. Viruses 2023; 15:507. [PMID: 36851721 PMCID: PMC9958792 DOI: 10.3390/v15020507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 01/30/2023] [Accepted: 02/07/2023] [Indexed: 02/15/2023] Open
Abstract
The largest dengue outbreak in the history of Nepal occurred in 2022, with a significant number of casualties. It affected all 77 districts, with the nation's capital, Kathmandu (altitude 1300 m), being the hardest hit. However, the molecular epidemiology of this outbreak, including the dengue virus (DENV) serotype(s) responsible for this epidemic, remain unknown. Here, we report the epidemic trends, clinico-laboratory features, and virus serotypes and their viral load profiles that are associated with this outbreak in Nepal. Dengue-suspected febrile patients were investigated by routine laboratory, serological, and molecular tools, including a real-time quantitative polymerase chain reaction (qRT-PCR). Of the 538 dengue-suspected patients enrolled, 401 (74.5%) were diagnosed with dengue. Among these dengue cases, 129 (32.2%) patients who required hospital admission had significant associations with myalgia, rash, diarrhea, retro-orbital pain, bleeding, and abdominal pain. DENV-1, -2, and -3 were identified during the 2022 epidemic, with a predominance of DENV-1 (57.1%) and DENV-3 (32.1%), exhibiting a new serotype addition. We found that multiple serotypes circulated in 2022, with a higher frequency of hospitalizations, more severe dengue, and more deaths than in the past. Therefore, precise mapping of dengue and other related infections through integrated disease surveillance, evaluation of the dynamics of population-level immunity and virus evolution should be the urgent plans of action for evidence-based policy-making for dengue control and prevention in the country.
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Affiliation(s)
- Sandesh Rimal
- Central Department of Microbiology, Tribhuvan University, Kathmandu 44601, Nepal
| | - Sabin Shrestha
- Central Department of Microbiology, Tribhuvan University, Kathmandu 44601, Nepal
| | - Kishor Pandey
- Central Department of Zoology, Tribhuvan University, Kathmandu 44601, Nepal
| | - Thanh Vu Nguyen
- Institute of Tropical Medicine, DEJIMA Infectious Disease Research Allience, Nagasaki University, Nagasaki 852-8523, Japan
| | - Parmananda Bhandari
- Sukraraj Tropical and Infectious Diseases Hospital, Teku, Kathmandu 44600, Nepal
| | | | - Dhiraj Acharya
- Cleveland Clinic, Florida Research and Innovation Center, Port Saint Lucie, FL 34987, USA
| | - Nabaraj Adhikari
- Central Department of Microbiology, Tribhuvan University, Kathmandu 44601, Nepal
| | - Komal Raj Rijal
- Central Department of Microbiology, Tribhuvan University, Kathmandu 44601, Nepal
| | - Prakash Ghimire
- Central Department of Microbiology, Tribhuvan University, Kathmandu 44601, Nepal
| | - Yuki Takamatsu
- Institute of Tropical Medicine, DEJIMA Infectious Disease Research Allience, Nagasaki University, Nagasaki 852-8523, Japan
| | - Basu Dev Pandey
- Department of Molecular Epidemiology, Institute of Tropical Medicine, Nagasaki University, Nagasaki 852-8523, Japan
| | - Stefan Fernandez
- Armed Forces Research Institute of Medical Sciences (AFRIMS), Bangkok 10400, Thailand
| | - Kouichi Morita
- Institute of Tropical Medicine, DEJIMA Infectious Disease Research Allience, Nagasaki University, Nagasaki 852-8523, Japan
| | - Mya Myat Ngwe Tun
- Institute of Tropical Medicine, DEJIMA Infectious Disease Research Allience, Nagasaki University, Nagasaki 852-8523, Japan
| | - Shyam Prakash Dumre
- Central Department of Microbiology, Tribhuvan University, Kathmandu 44601, Nepal
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Li X, Wei X, Yin W, Soares Magalhaes RJ, Xu Y, Wen L, Peng H, Qian Q, Sun H, Zhang W. Using ecological niche modeling to predict the potential distribution of scrub typhus in Fujian Province, China. Parasit Vectors 2023; 16:44. [PMID: 36721181 PMCID: PMC9887782 DOI: 10.1186/s13071-023-05668-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Accepted: 01/13/2023] [Indexed: 02/02/2023] Open
Abstract
BACKGROUND Despite the increasing number of cases of scrub typhus and its expanding geographical distribution in China, its potential distribution in Fujian Province, which is endemic for the disease, has yet to be investigated. METHODS A negative binomial regression model for panel data mainly comprising meteorological, socioeconomic and land cover variables was used to determine the risk factors for the occurrence of scrub typhus. Maximum entropy modeling was used to identify the key predictive variables of scrub typhus and their ranges, map the suitability of different environments for the disease, and estimate the proportion of the population at different levels of infection risk. RESULTS The final multivariate negative binomial regression model for panel data showed that the annual mean normalized difference vegetation index had the strongest correlation with the number of scrub typhus cases. With each 0.1% rise in shrubland and 1% rise in barren land there was a 75.0% and 37.0% increase in monthly scrub typhus cases, respectively. In contrast, each unit rise in mean wind speed in the previous 2 months and each 1% increase in water bodies corresponded to a decrease of 40.0% and 4.0% in monthly scrub typhus cases, respectively. The predictions of the maximum entropy model were robust, and the average area under the curve value was as high as 0.864. The best predictive variables for scrub typhus occurrence were population density, annual mean normalized difference vegetation index, and land cover types. The projected potentially most suitable areas for scrub typhus were widely distributed across the eastern coastal area of Fujian Province, with highly suitable and moderately suitable areas accounting for 16.14% and 9.42%, respectively. Of the total human population of the province, 81.63% reside in highly suitable areas for scrub typhus. CONCLUSIONS These findings could help deepen our understanding of the risk factors of scrub typhus, and provide information for public health authorities in Fujian Province to develop more effective surveillance and control strategies in identified high risk areas in Fujian Province.
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Affiliation(s)
- Xuan Li
- grid.186775.a0000 0000 9490 772XDepartment of Epidemiology and Biostatistics, School of Public Health, Anhui Medical University, Hefei, China ,grid.488137.10000 0001 2267 2324Chinese PLA Center for Disease Control and Prevention, Beijing, China
| | - Xianyu Wei
- grid.186775.a0000 0000 9490 772XDepartment of Epidemiology and Biostatistics, School of Public Health, Anhui Medical University, Hefei, China ,grid.488137.10000 0001 2267 2324Chinese PLA Center for Disease Control and Prevention, Beijing, China
| | - Wenwu Yin
- grid.198530.60000 0000 8803 2373Chinese Center for Disease Control and Prevention, Beijing, China
| | - Ricardo J. Soares Magalhaes
- grid.1003.20000 0000 9320 7537Spatial Epidemiology Laboratory, School of Veterinary Science, The University of Queensland, Brisbane, Australia ,grid.1003.20000 0000 9320 7537Child Health Research Center, The University of Queensland, Brisbane, Australia
| | - Yuanyong Xu
- grid.488137.10000 0001 2267 2324Chinese PLA Center for Disease Control and Prevention, Beijing, China
| | - Liang Wen
- grid.488137.10000 0001 2267 2324Chinese PLA Center for Disease Control and Prevention, Beijing, China
| | - Hong Peng
- grid.488137.10000 0001 2267 2324Chinese PLA Center for Disease Control and Prevention, Beijing, China
| | - Quan Qian
- grid.488137.10000 0001 2267 2324Chinese PLA Center for Disease Control and Prevention, Beijing, China
| | - Hailong Sun
- grid.186775.a0000 0000 9490 772XDepartment of Epidemiology and Biostatistics, School of Public Health, Anhui Medical University, Hefei, China ,grid.488137.10000 0001 2267 2324Chinese PLA Center for Disease Control and Prevention, Beijing, China
| | - Wenyi Zhang
- grid.186775.a0000 0000 9490 772XDepartment of Epidemiology and Biostatistics, School of Public Health, Anhui Medical University, Hefei, China ,grid.488137.10000 0001 2267 2324Chinese PLA Center for Disease Control and Prevention, Beijing, China
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9
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Phang WK, Hamid MHBA, Jelip J, Mudin RNB, Chuang TW, Lau YL, Fong MY. Predicting Plasmodium knowlesi transmission risk across Peninsular Malaysia using machine learning-based ecological niche modeling approaches. Front Microbiol 2023; 14:1126418. [PMID: 36876062 PMCID: PMC9977793 DOI: 10.3389/fmicb.2023.1126418] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Accepted: 01/30/2023] [Indexed: 02/18/2023] Open
Abstract
The emergence of potentially life-threatening zoonotic malaria caused by Plasmodium knowlesi nearly two decades ago has continued to challenge Malaysia healthcare. With a total of 376 P. knowlesi infections notified in 2008, the number increased to 2,609 cases in 2020 nationwide. Numerous studies have been conducted in Malaysian Borneo to determine the association between environmental factors and knowlesi malaria transmission. However, there is still a lack of understanding of the environmental influence on knowlesi malaria transmission in Peninsular Malaysia. Therefore, our study aimed to investigate the ecological distribution of human P. knowlesi malaria in relation to environmental factors in Peninsular Malaysia. A total of 2,873 records of human P. knowlesi infections in Peninsular Malaysia from 1st January 2011 to 31st December 2019 were collated from the Ministry of Health Malaysia and geolocated. Three machine learning-based models, maximum entropy (MaxEnt), extreme gradient boosting (XGBoost), and ensemble modeling approach, were applied to predict the spatial variation of P. knowlesi disease risk. Multiple environmental parameters including climate factors, landscape characteristics, and anthropogenic factors were included as predictors in both predictive models. Subsequently, an ensemble model was developed based on the output of both MaxEnt and XGBoost. Comparison between models indicated that the XGBoost has higher performance as compared to MaxEnt and ensemble model, with AUCROC values of 0.933 ± 0.002 and 0.854 ± 0.007 for train and test datasets, respectively. Key environmental covariates affecting human P. knowlesi occurrence were distance to the coastline, elevation, tree cover, annual precipitation, tree loss, and distance to the forest. Our models indicated that the disease risk areas were mainly distributed in low elevation (75-345 m above mean sea level) areas along the Titiwangsa mountain range and inland central-northern region of Peninsular Malaysia. The high-resolution risk map of human knowlesi malaria constructed in this study can be further utilized for multi-pronged interventions targeting community at-risk, macaque populations, and mosquito vectors.
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Affiliation(s)
- Wei Kit Phang
- Department of Parasitology, Faculty of Medicine, Universiti Malaya, Kuala Lumpur, Malaysia
| | | | - Jenarun Jelip
- Disease Control Division, Ministry of Health Malaysia, Putrajaya, Malaysia
| | - Rose Nani Binti Mudin
- Sabah State Health Department, Ministry of Health Malaysia, Kota Kinabalu, Sabah, Malaysia
| | - Ting-Wu Chuang
- Department of Molecular Parasitology and Tropical Diseases, School of Medicine, College of Medicine, Taipei Medical University, Taipei, Taiwan
| | - Yee Ling Lau
- Department of Parasitology, Faculty of Medicine, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Mun Yik Fong
- Department of Parasitology, Faculty of Medicine, Universiti Malaya, Kuala Lumpur, Malaysia
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10
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Kramer IM, Pfenninger M, Feldmeyer B, Dhimal M, Gautam I, Shreshta P, Baral S, Phuyal P, Hartke J, Magdeburg A, Groneberg DA, Ahrens B, Müller R, Waldvogel AM. Genomic profiling of climate adaptation in Aedes aegypti along an altitudinal gradient in Nepal indicates nongradual expansion of the disease vector. Mol Ecol 2023; 32:350-368. [PMID: 36305220 DOI: 10.1111/mec.16752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2022] [Revised: 10/21/2022] [Accepted: 10/25/2022] [Indexed: 01/11/2023]
Abstract
Driven by globalization, urbanization and climate change, the distribution range of invasive vector species has expanded to previously colder ecoregions. To reduce health-threatening impacts on humans, insect vectors are extensively studied. Population genomics can reveal the genomic basis of adaptation and help to identify emerging trends of vector expansion. By applying whole genome analyses and genotype-environment associations to populations of the main dengue vector Aedes aegypti, sampled along an altitudinal gradient in Nepal (200-1300 m), we identify putatively adaptive traits and describe the species' genomic footprint of climate adaptation to colder ecoregions. We found two differentiated clusters with significantly different allele frequencies in genes associated to climate adaptation between the highland population (1300 m) and all other lowland populations (≤800 m). We revealed nonsynonymous mutations in 13 of the candidate genes associated to either altitude, precipitation or cold tolerance and identified an isolation-by-environment differentiation pattern. Other than the expected gradual differentiation along the altitudinal gradient, our results reveal a distinct genomic differentiation of the highland population. Local high-altitude adaptation could be one explanation of the population's phenotypic cold tolerance. Carrying alleles relevant for survival under colder climate increases the likelihood of this highland population to a worldwide expansion into other colder ecoregions.
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Affiliation(s)
- Isabelle Marie Kramer
- Institute of Occupational, Social and Environmental Medicine, Goethe University, Frankfurt am Main, Germany.,Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Germany
| | - Markus Pfenninger
- Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Germany.,Institute of Organismic and Molecular Evolution, Johannes Gutenberg University, Mainz, Germany
| | - Barbara Feldmeyer
- Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Germany
| | | | - Ishan Gautam
- Natural History Museum, Tribhuvan University, Kathmandu, Nepal
| | | | | | - Parbati Phuyal
- Institute of Occupational, Social and Environmental Medicine, Goethe University, Frankfurt am Main, Germany
| | - Juliane Hartke
- Institute of Organismic and Molecular Evolution, Johannes Gutenberg University, Mainz, Germany
| | - Axel Magdeburg
- Institute of Occupational, Social and Environmental Medicine, Goethe University, Frankfurt am Main, Germany
| | - David A Groneberg
- Institute of Occupational, Social and Environmental Medicine, Goethe University, Frankfurt am Main, Germany
| | - Bodo Ahrens
- Institute for Atmospheric and Environmental Sciences, Goethe University, Frankfurt am Main, Germany
| | - Ruth Müller
- Institute of Occupational, Social and Environmental Medicine, Goethe University, Frankfurt am Main, Germany.,Unit Entomology, Institute of Tropical Medicine, Antwerp, Belgium
| | - Ann-Marie Waldvogel
- Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Germany.,Institute of Zoology, University of Cologne, Cologne, Germany
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11
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Sharma H, Ilyas A, Chowdhury A, Poddar NK, Chaudhary AA, Shilbayeh SAR, Ibrahim AA, Khan S. Does COVID-19 lockdowns have impacted on global dengue burden? A special focus to India. BMC Public Health 2022; 22:1402. [PMID: 35869470 PMCID: PMC9304795 DOI: 10.1186/s12889-022-13720-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Accepted: 06/27/2022] [Indexed: 12/12/2022] Open
Abstract
Background The world has been battling several vector-borne diseases since time immemorial. Socio-economic marginality, precipitation variations and human behavioral attributes play a major role in the proliferation of these diseases. Lockdown and social distancing have affected social behavioral aspects of human life and somehow impact on the spread of vector borne diseases. This article sheds light into the relationship between COVID-19 lockdown and global dengue burden with special focus on India. It also focuses on the interconnection of the COVID-19 pandemic (waves 1 and 2) and the alteration of human behavioral patterns in dengue cases. Methods We performed a systematic search using various resources from different platforms and websites, such as Medline; Pubmed; PAHO; WHO; CDC; ECDC; Epidemiology Unit Ministry of Health (Sri Lanka Government); NASA; NVBDCP from 2015 until 2021. We have included many factors, such as different geographical conditions (tropical climate, semitropic and arid conditions); GDP rate (developed nations, developing nations, and underdeveloped nations). We also categorized our data in order to conform to COVID-19 duration from 2019 to 2021. Data was extracted for the complete duration of 10 years (2012 to 2021) from various countries with different geographical region (arid region, semitropic/semiarid region and tropical region). Results There was a noticeable reduction in dengue cases in underdeveloped (70–85%), developing (50–90%), and developed nations (75%) in the years 2019 and 2021. The dengue cases drastically reduced by 55–65% with the advent of COVID-19 s wave in the year 2021 across the globe. Conclusions At present, we can conclude that COVID-19 and dengue show an inverse relationship. These preliminary, data-based observations should guide clinical practice until more data are made public and basis for further medical research. • COVID-19 has increased the burden on the health care system across the globe. • COVID-19 has inverse relation with the occurrence of Dengue cases. • Dengue situation is worse in countries with low GDP. • Human behavior and social distancing have direct correlation with the number of Dengue cases. • Cross-reactivity or overlap between Dengue and COVID-19, has proportional effect on each other.
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12
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Bonnin L, Tran A, Herbreteau V, Marcombe S, Boyer S, Mangeas M, Menkes C. Predicting the Effects of Climate Change on Dengue Vector Densities in Southeast Asia through Process-Based Modeling. ENVIRONMENTAL HEALTH PERSPECTIVES 2022; 130:127002. [PMID: 36473499 PMCID: PMC9726451 DOI: 10.1289/ehp11068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Revised: 09/19/2022] [Accepted: 10/21/2022] [Indexed: 05/06/2023]
Abstract
BACKGROUND Aedes aegypti and Ae. albopictus mosquitoes are major vectors for several human diseases of global importance, such as dengue and yellow fever. Their life cycles and hosted arboviruses are climate sensitive and thus expected to be impacted by climate change. Most studies investigating climate change impacts on Aedes at global or continental scales focused on their future global distribution changes, whereas a single study focused on its effects on Ae. aegypti densities regionally. OBJECTIVES A process-based approach was used to model densities of Ae. aegypti and Ae. albopictus and their potential evolution with climate change using a panel of nine CMIP6 climate models and climate scenarios ranging from strong to low mitigation measures at the Southeast Asian scale and for the next 80 y. METHODS The process-based model described, through a system of ordinary differential equations, the variations of mosquito densities in 10 compartments, corresponding to 10 different stages of mosquito life cycle, in response to temperature and precipitation variations. Local field data were used to validate model outputs. RESULTS We show that both species densities will globally increase due to future temperature increases. In Southeast Asia by the end of the century, Ae. aegypti densities are expected to increase from 25% with climate mitigation measures to 46% without; Ae. albopictus densities are expected to increase from 13%-21%, respectively. However, we find spatially contrasted responses at the seasonal scales with a significant decrease in Ae. albopictus densities in lowlands during summer in the future. DISCUSSION These results contrast with previous results, which brings new insight on the future impacts of climate change on Aedes densities. Major sources of uncertainties, such as mosquito model parametrization and climate model uncertainties, were addressed to explore the limits of such modeling. https://doi.org/10.1289/EHP11068.
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Affiliation(s)
- Lucas Bonnin
- ENTROPIE (UMR 9220), IRD, Université de la Réunion, CNRS, Ifremer, Université de Nouvelle Calédonie, Nouméa, Nouvelle-Calédonie
| | - Annelise Tran
- CIRAD, UMR TETIS, Sainte-Clotilde, Reunion Island, France
- TETIS, Université Montpellier, AgroParisTech, CIRAD, CNRS, INRAE, Montpellier, France
- CIRAD, UMR ASTRE, Sainte-Clotilde, Reunion Island, France
- ASTRE, Université Montpellier, CIRAD, INRAE, Montpellier, France
| | - Vincent Herbreteau
- ESPACE-DEV, IRD, Université Antilles, Université Guyane, Université Montpellier, Université de la Réunion, Montpellier, France
- ESPACE-DEV, IRD, Université Antilles, Université Guyane, Université Montpellier, Université de la Réunion, Phnom Penh, Cambodia
| | - Sébastien Marcombe
- Medical Entomology and Vector-Borne Disease Laboratory, Institut Pasteur du Laos, Vientiane, Lao PDR
| | - Sébastien Boyer
- Medical and Veterinary Entomology Unit, Institut Pasteur du Cambodge, Phnom Penh, Cambodia
| | - Morgan Mangeas
- ENTROPIE (UMR 9220), IRD, Université de la Réunion, CNRS, Ifremer, Université de Nouvelle Calédonie, Nouméa, Nouvelle-Calédonie
| | - Christophe Menkes
- ENTROPIE (UMR 9220), IRD, Université de la Réunion, CNRS, Ifremer, Université de Nouvelle Calédonie, Nouméa, Nouvelle-Calédonie
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13
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Transmission Risk Prediction and Evaluation of Mountain-Type Zoonotic Visceral Leishmaniasis in China Based on Climatic and Environmental Variables. ATMOSPHERE 2022. [DOI: 10.3390/atmos13060964] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
With global warming and socioeconomic developments, there is a tendency toward the emergence and spread of mountain-type zoonotic visceral leishmaniasis (MT-ZVL) in China. Timely identification of the transmission risk and spread of MT-ZVL is, therefore, of great significance for effectively interrupting the spread of MT-ZVL and eliminating the disease. In this study, 26 environmental variables—namely, climatic, geographical, and 2 socioeconomic indicators were collected from regions where MT-ZVL patients were detected during the period from 2019 to 2021, to create 10 ecological niche models. The performance of these ecological niche models was evaluated using the area under the receiver-operating characteristic curve (AUC) and true skill statistic (TSS), and ensemble models were created to predict the transmission risk of MT-ZVL in China. All ten ecological niche models were effective at predicting the transmission risk of MT-ZVL in China, and there were significant differences in the mean AUC (H = 33.311, p < 0.05) and TSS values among these ten models (H = 26.344, p < 0.05). The random forest, maximum entropy, generalized boosted, and multivariate adaptive regression splines showed high performance at predicting the transmission risk of MT-ZVL (AUC > 0.95, TSS > 0.85). Ensemble models predicted a transmission risk of MT-ZVL in the provinces of Shanxi, Shaanxi, Henan, Gansu, Sichuan, and Hebei, which was centered in Shanxi Province and presented high spatial clustering characteristics. Multiple ensemble ecological niche models created based on climatic and environmental variables are effective at predicting the transmission risk of MT-ZVL in China. This risk is centered in Shanxi Province and tends towards gradual radiation dispersion to surrounding regions. Our results provide insights into MT-ZVL surveillance in regions at high risk of MT-ZVL.
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14
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Ochida N, Mangeas M, Dupont-Rouzeyrol M, Dutheil C, Forfait C, Peltier A, Descloux E, Menkes C. Modeling present and future climate risk of dengue outbreak, a case study in New Caledonia. Environ Health 2022; 21:20. [PMID: 35057822 PMCID: PMC8772089 DOI: 10.1186/s12940-022-00829-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Accepted: 01/03/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Dengue dynamics result from the complex interactions between the virus, the host and the vector, all being under the influence of the environment. Several studies explored the link between weather and dengue dynamics and some investigated the impact of climate change on these dynamics. Most attempted to predict incidence rate at a country scale or assess the environmental suitability at a global or regional scale. Here, we propose a new approach which consists in modeling the risk of dengue outbreak at a local scale according to climate conditions and study the evolution of this risk taking climate change into account. We apply this approach in New Caledonia, where high quality data are available. METHODS We used a statistical estimation of the effective reproduction number (Rt) based on case counts to create a categorical target variable : epidemic week/non-epidemic week. A machine learning classifier has been trained using relevant climate indicators in order to estimate the probability for a week to be epidemic under current climate data and this probability was then estimated under climate change scenarios. RESULTS Weekly probability of dengue outbreak was best predicted with the number of days when maximal temperature exceeded 30.8°C and the mean of daily precipitation over 80 and 60 days prior to the predicted week respectively. According to scenario RCP8.5, climate will allow dengue outbreak every year in New Caledonia if the epidemiological and entomological contexts remain the same. CONCLUSION We identified locally relevant climatic factor driving dengue outbreaks in New Caledonia and assessed the inter-annual and seasonal risk of dengue outbreak under different climate change scenarios up to the year 2100. We introduced a new modeling approach to estimate the risk of dengue outbreak depending on climate conditions. This approach is easily reproducible in other countries provided that reliable epidemiological and climate data are available.
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Affiliation(s)
- Noé Ochida
- UMR ENTROPIE (IRD, Université de la Réunion, CNRS, Ifremer, Université de la Nouvelle-Calédonie), Nouméa, New Caledonia.
- URE-Dengue et Arboviroses, Institut Pasteur de Nouvelle-Calédonie, Pasteur Network, Nouméa, New Caledonia.
| | - Morgan Mangeas
- UMR ENTROPIE (IRD, Université de la Réunion, CNRS, Ifremer, Université de la Nouvelle-Calédonie), Nouméa, New Caledonia
| | - Myrielle Dupont-Rouzeyrol
- URE-Dengue et Arboviroses, Institut Pasteur de Nouvelle-Calédonie, Pasteur Network, Nouméa, New Caledonia
| | - Cyril Dutheil
- Department of Physical Oceanography and Instrumentation, Leibniz Institute for Baltic Sea Research, Warnemünde, Rostock, Germany
| | - Carole Forfait
- Direction des Affaires Sanitaires et Sociales, Nouméa, New Caledonia
| | | | - Elodie Descloux
- Service de Médecine interne, Centre Hospitalier Territorial Gaston-Bourret, 988935, Dumbea-Sur-Mer, New Caledonia
| | - Christophe Menkes
- UMR ENTROPIE (IRD, Université de la Réunion, CNRS, Ifremer, Université de la Nouvelle-Calédonie), Nouméa, New Caledonia
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15
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Rubel M, Anwar C, Irfanuddin I, Irsan C, Amin R, Ghiffari A. Impact of Climate Variability and Incidence on Dengue Hemorrhagic Fever in Palembang City, South Sumatra, Indonesia. Open Access Maced J Med Sci 2021. [DOI: 10.3889/oamjms.2021.6853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
Dengue hemorrhagic fever (DHF) is a dengue virus infection transmitted by Aedes spp. Climate has a profound influence on mosquito breeding. Palembang has the highest rate of DHF in South Sumatra. This study aimed to investigate the relationship between the components of climate factors and the incidence of DHF in Palembang. This study was cross-sectional, with an observational analytic approach. The Palembang City Health Office compiled data on DHF incidence rates from 2016 to 2020. Climatic factor data (rainfall, number of rainy days, temperature, humidity, wind speed, sun irradiance) were collected from the Climatology Station Class I Palembang - BMKG Station and Task Force that same year. The Spearman test was used to conduct the correlation test. Between 2016 and 2020, there were 3,398 DHF patients. From January to May, DHF increased. There was a significant correlation between rainfall (r = 0.320; p = 0.005), number of rainy days (r = 0.295; p = 0.020), temperature (r = 0.371; p = 0.040), and humidity (r = 0.221; p = 0.024), wind speed (r= 0.76; p = 0.492), and sunlight (r = 0.008; p = 0.865). Rainfall, the number of rainy days, and temperature were three climatic factors determining the increase in dengue incidence in Palembang.
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16
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Dhimal M, Bhandari D, Dhimal ML, Kafle N, Pyakurel P, Mahotra N, Akhtar S, Ismail T, Dhiman RC, Groneberg DA, Shrestha UB, Müller R. Impact of Climate Change on Health and Well-Being of People in Hindu Kush Himalayan Region: A Narrative Review. Front Physiol 2021; 12:651189. [PMID: 34421631 PMCID: PMC8378503 DOI: 10.3389/fphys.2021.651189] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Accepted: 06/30/2021] [Indexed: 12/03/2022] Open
Abstract
Climate change and variability affect virtually everyone and every region of the world but the effects are nowhere more prominent than in mountain regions and people living therein. The Hindu Kush Himalayan (HKH) region is a vast expanse encompassing 18% of the world’s mountainous area. Sprawling over 4.3 million km2, the HKH region occupies areas of eight countries namely Nepal, Bhutan, Afghanistan, Bangladesh, China, India, Myanmar, and Pakistan. The HKH region is warming at a rate higher than the global average and precipitation has also increased significantly over the last 6 decades along with increased frequency and intensity of some extreme events. Changes in temperature and precipitation have affected and will like to affect the climate-dependent sectors such as hydrology, agriculture, biodiversity, and human health. This paper aims to document how climate change has impacted and will impact, health and well-being of the people in the HKH region and offers adaptation and mitigation measures to reduce the impacts of climate change on health and well-being of the people. In the HKH region, climate change boosts infectious diseases, non-communicable diseases (NCDs), malnutrition, and injuries. Hence, climate change adaptation and mitigation measures are needed urgently to safeguard vulnerable populations residing in the HKH region.
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Affiliation(s)
- Meghnath Dhimal
- Nepal Health Research Council, Kathmandu, Nepal.,Global Institute for Interdisciplinary Studies, Lalitpur, Nepal
| | - Dinesh Bhandari
- School of Public Health, The University of Adelaide, Adelaide, SA, Australia
| | - Mandira Lamichhane Dhimal
- Global Institute for Interdisciplinary Studies, Lalitpur, Nepal.,Policy Research Institute, Kathmandu, Nepal
| | | | - Prajjwal Pyakurel
- Department of Community Medicine, BP Koirala Institute of Health Sciences, Dharan, Nepal
| | - Narayan Mahotra
- Institute of Medicine, Tribhuvan University, Kathmandu, Nepal
| | - Saeed Akhtar
- Institute of Food Science and Nutrition, Bahauddin Zakariya University, Multan, Pakistan
| | - Tariq Ismail
- Institute of Food Science and Nutrition, Bahauddin Zakariya University, Multan, Pakistan
| | - Ramesh C Dhiman
- ICMR-National Institute of Malaria Research, New Delhi, India
| | - David A Groneberg
- Institute of Occupational, Social and Environmental Medicine, Goethe University, Frankfurt am Main, Germany
| | | | - Ruth Müller
- Institute of Tropical Medicine, Antwerp, Belgium
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17
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Tsheten T, Gray DJ, Clements ACA, Wangdi K. Epidemiology and challenges of dengue surveillance in the WHO South-East Asia Region. Trans R Soc Trop Med Hyg 2021; 115:583-599. [PMID: 33410916 DOI: 10.1093/trstmh/traa158] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 10/02/2020] [Accepted: 11/18/2020] [Indexed: 11/13/2022] Open
Abstract
Dengue poses a significant health and economic burden in the WHO South-East Asia Region. Approaches for control need to be aligned with current knowledge on the epidemiology of dengue in the region. Such knowledge will ensure improved targeting of interventions to reduce dengue incidence and its socioeconomic impact. This review was undertaken to describe the contemporary epidemiology of dengue and critically analyse the existing surveillance strategies in the region. Over recent decades, dengue incidence has continued to increase with geographical expansion. The region has now become hyper-endemic for multiple dengue virus serotypes/genotypes. Every epidemic cycle was associated with a change of predominant serotype/genotype and this was often associated with severe disease with intense transmission. Classical larval indices are widely used in vector surveillance and adult mosquito samplings are not implemented as a part of routine surveillance. Further, there is a lack of integration of entomological and disease surveillance systems, often leading to inaction or delays in dengue prevention and control. Disease surveillance does not capture all cases, resulting in under-reporting, and has thus failed to adequately represent the true burden of disease in the region. Possible solutions include incorporating adult mosquito sampling into routine vector surveillance, the establishment of laboratory-based sentinel surveillance, integrated vector and dengue disease surveillance and climate-based early warning systems using available technologies like mobile apps.
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Affiliation(s)
- Tsheten Tsheten
- Department of Globa l Health, Research School of Population Health, Australian National University, Canberra, Australia.,Royal Centre for Disease Control, Ministry of Health, Bhutan
| | - Darren J Gray
- Department of Globa l Health, Research School of Population Health, Australian National University, Canberra, Australia
| | - Archie C A Clements
- Faculty of Health Sciences, Curtin University, Perth, Australia.,Telethon Kids Institute, Nedlands, Australia
| | - Kinley Wangdi
- Department of Globa l Health, Research School of Population Health, Australian National University, Canberra, Australia
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Mendoza-Cano O, Rincón-Avalos P, Watson V, Khouakhi A, la Cruz JLD, Ruiz-Montero AP, Nava-Garibaldi CM, Lopez-Rojas M, Murillo-Zamora E. The Burden of Dengue in Children by Calculating Spatial Temperature: A Methodological Approach Using Remote Sensing Techniques. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:4230. [PMID: 33923602 PMCID: PMC8073896 DOI: 10.3390/ijerph18084230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 04/12/2021] [Accepted: 04/12/2021] [Indexed: 12/02/2022]
Abstract
BACKGROUND Dengue fever is one of the most important arboviral diseases. Surface temperature versus dengue burden in tropical environments can provide valuable information that can be adapted in future measurements to improve health policies. METHODS A methodological approach using Daymet-V3 provided estimates of daily weather parameters. A Python code developed by us extracted the median temperature from the urban regions of Colima State (207.3 km2) in Mexico. JointPoint regression models computed the mean temperature-adjusted average annual percentage of change (AAPC) in disability-adjusted life years (DALY) rates (per 100,000) due to dengue in Colima State among school-aged (5-14 years old) children. RESULTS Primary outcomes were average temperature in urban areas and cumulative dengue burden in DALYs in the school-aged population. A model from 1990 to 2017 medium surface temperature with DALY rates was performed. The increase in DALYs rate was 64% (95% CI, 44-87%), and it seemed to depend on the 2000-2009 estimates (AAPC = 185%, 95% CI 18-588). CONCLUSION From our knowledge, this is the first study to evaluate surface temperature and to model it through an extensive period with health economics calculations in a specific subset of the Latin-American endemic population for dengue epidemics.
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Affiliation(s)
- Oliver Mendoza-Cano
- Facultad de Ingeniería Civil, Universidad de Colima, km. 9 Carretera Colima-Coquimatlán, Col. Jardines del Llano, Coquimatlán 28400, Colima, Mexico; (P.R.-A.); (J.L.-d.l.C.); (A.P.R.-M.); (M.L.-R.)
| | - Pedro Rincón-Avalos
- Facultad de Ingeniería Civil, Universidad de Colima, km. 9 Carretera Colima-Coquimatlán, Col. Jardines del Llano, Coquimatlán 28400, Colima, Mexico; (P.R.-A.); (J.L.-d.l.C.); (A.P.R.-M.); (M.L.-R.)
| | - Verity Watson
- Health Economics Research Unit, University of Aberdeen, Aberdeen AB25 2ZD, UK;
| | - Abdou Khouakhi
- School of Water, Energy and Environment, Centre for Environmental and Agricultural Informatics, Cranfield University, Cranfield MK43 0AL, UK;
| | - Jesús López-de la Cruz
- Facultad de Ingeniería Civil, Universidad de Colima, km. 9 Carretera Colima-Coquimatlán, Col. Jardines del Llano, Coquimatlán 28400, Colima, Mexico; (P.R.-A.); (J.L.-d.l.C.); (A.P.R.-M.); (M.L.-R.)
| | - Angelica Patricia Ruiz-Montero
- Facultad de Ingeniería Civil, Universidad de Colima, km. 9 Carretera Colima-Coquimatlán, Col. Jardines del Llano, Coquimatlán 28400, Colima, Mexico; (P.R.-A.); (J.L.-d.l.C.); (A.P.R.-M.); (M.L.-R.)
| | - Cynthia Monique Nava-Garibaldi
- Department of Civil and Environmental Engineering, University of Wisconsin-Madison, 1415 Engineering Dr, Madison, WI 53706, USA;
| | - Mario Lopez-Rojas
- Facultad de Ingeniería Civil, Universidad de Colima, km. 9 Carretera Colima-Coquimatlán, Col. Jardines del Llano, Coquimatlán 28400, Colima, Mexico; (P.R.-A.); (J.L.-d.l.C.); (A.P.R.-M.); (M.L.-R.)
| | - Efrén Murillo-Zamora
- Departamento de Epidemiología, Unidad de Medicina Familiar No. 19, Instituto Mexicano del Seguro Social, Av. Javier Mina 301, Col. Centro, Colima 28000, Colima, Mexico
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Otieno FT, Gachohi J, Gikuma-Njuru P, Kariuki P, Oyas H, Canfield SA, Bett B, Njenga MK, Blackburn JK. Modeling the Potential Future Distribution of Anthrax Outbreaks under Multiple Climate Change Scenarios for Kenya. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:4176. [PMID: 33920863 PMCID: PMC8103515 DOI: 10.3390/ijerph18084176] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Revised: 03/17/2021] [Accepted: 03/23/2021] [Indexed: 11/16/2022]
Abstract
The climate is changing, and such changes are projected to cause global increase in the prevalence and geographic ranges of infectious diseases such as anthrax. There is limited knowledge in the tropics with regards to expected impacts of climate change on anthrax outbreaks. We determined the future distribution of anthrax in Kenya with representative concentration pathways (RCP) 4.5 and 8.5 for year 2055. Ecological niche modelling (ENM) of boosted regression trees (BRT) was applied in predicting the potential geographic distribution of anthrax for current and future climatic conditions. The models were fitted with presence-only anthrax occurrences (n = 178) from historical archives (2011-2017), sporadic outbreak surveys (2017-2018), and active surveillance (2019-2020). The selected environmental variables in order of importance included rainfall of wettest month, mean precipitation (February, October, December, July), annual temperature range, temperature seasonality, length of longest dry season, potential evapotranspiration and slope. We found a general anthrax risk areal expansion i.e., current, 36,131 km2, RCP 4.5, 40,012 km2, and RCP 8.5, 39,835 km2. The distribution exhibited a northward shift from current to future. This prediction of the potential anthrax distribution under changing climates can inform anticipatory measures to mitigate future anthrax risk.
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Affiliation(s)
- Fredrick Tom Otieno
- Animal Health Program, International Livestock Research Institute, P.O. Box 30709 Nairobi 00100, Kenya;
- School of Environment, Water and Natural Resources, South Eastern Kenya University, P.O. Box 17, Kitui 90200, Kenya; (P.G.-N.); (P.K.)
| | - John Gachohi
- Paul Allen School for Global Health, Washington State University-Global Health Kenya, One Padmore Place, George Padmore Lane, P.O. Box 19676 Nairobi 00100, Kenya; (J.G.); (M.K.N.)
- School of Public Health, Jomo Kenyatta University of Agriculture and Technology, P.O. Box 62000, Nairobi 00200, Kenya
| | - Peter Gikuma-Njuru
- School of Environment, Water and Natural Resources, South Eastern Kenya University, P.O. Box 17, Kitui 90200, Kenya; (P.G.-N.); (P.K.)
| | - Patrick Kariuki
- School of Environment, Water and Natural Resources, South Eastern Kenya University, P.O. Box 17, Kitui 90200, Kenya; (P.G.-N.); (P.K.)
| | - Harry Oyas
- Veterinary Epidemiology and Economics Unit, Kenya Ministry of Agriculture, Livestock and Fisheries, P.O. Box 30028 Nairobi 00100, Kenya;
| | - Samuel A. Canfield
- Spatial Epidemiology and Ecology Research Laboratory, Department of Geography, University of Florida, Gainesville, FL 32611, USA; (S.A.C.); (J.K.B.)
- Emerging Pathogens Institute, University of Florida, 2055 Mowry Road, Gainesville, FL 32611, USA
| | - Bernard Bett
- Animal Health Program, International Livestock Research Institute, P.O. Box 30709 Nairobi 00100, Kenya;
| | - Moses Kariuki Njenga
- Paul Allen School for Global Health, Washington State University-Global Health Kenya, One Padmore Place, George Padmore Lane, P.O. Box 19676 Nairobi 00100, Kenya; (J.G.); (M.K.N.)
| | - Jason K. Blackburn
- Spatial Epidemiology and Ecology Research Laboratory, Department of Geography, University of Florida, Gainesville, FL 32611, USA; (S.A.C.); (J.K.B.)
- Emerging Pathogens Institute, University of Florida, 2055 Mowry Road, Gainesville, FL 32611, USA
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Ocampo-Chavira P, Eaton-Gonzalez R, Riquelme M. Of Mice and Fungi: Coccidioides spp. Distribution Models. J Fungi (Basel) 2020; 6:jof6040320. [PMID: 33261168 PMCID: PMC7712536 DOI: 10.3390/jof6040320] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Revised: 11/18/2020] [Accepted: 11/25/2020] [Indexed: 12/25/2022] Open
Abstract
The continuous increase of Coccidioidomycosis cases requires reliable detection methods of the causal agent, Coccidioides spp., in its natural environment. This has proven challenging because of our limited knowledge on the distribution of this soil-dwelling fungus. Knowing the pathogen’s geographic distribution and its relationship with the environment is crucial to identify potential areas of risk and to prevent disease outbreaks. The maximum entropy (Maxent) algorithm, Geographic Information System (GIS) and bioclimatic variables were combined to obtain current and future potential distribution models (DMs) of Coccidioides and its putative rodent reservoirs for Arizona, California and Baja California. We revealed that Coccidioides DMs constructed with presence records from one state are not well suited to predict distribution in another state, supporting the existence of distinct phylogeographic populations of Coccidioides. A great correlation between Coccidioides DMs and United States counties with high Coccidioidomycosis incidence was found. Remarkably, under future scenarios of climate change and high concentration of greenhouse gases, the probability of habitat suitability for Coccidioides increased. Overlap analysis between the DMs of rodents and Coccidioides, identified Neotoma lepida as one of the predominant co-occurring species in all three states. Considering rodents DMs would allow to implement better surveillance programs to monitor disease spread.
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Affiliation(s)
- Pamela Ocampo-Chavira
- Department of Microbiology, Centro de Investigación Científica y Educación Superior de Ensenada (CICESE), Ctra. Ensenada-Tijuana No. 3918, Ensenada, Baja California 22860, Mexico;
| | - Ricardo Eaton-Gonzalez
- Academic Unit of Ensenada, Universidad Tecnológica de Tijuana, Ctra. a la Bufadora KM. 1, Maneadero Parte Alta, Ensenada, Baja California 22790, Mexico;
| | - Meritxell Riquelme
- Department of Microbiology, Centro de Investigación Científica y Educación Superior de Ensenada (CICESE), Ctra. Ensenada-Tijuana No. 3918, Ensenada, Baja California 22860, Mexico;
- Correspondence:
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Sintayehu DW, Tassie N, De Boer WF. Present and future climatic suitability for dengue fever in Africa. Infect Ecol Epidemiol 2020; 10:1782042. [PMID: 32939230 PMCID: PMC7480615 DOI: 10.1080/20008686.2020.1782042] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The number of dengue fever incidence and its distribution has increased considerably in recent years in Africa. However, due to inadequate research at the continental level, there is a limited understanding regarding the current and future spatial distribution of the main vector, the mosquitoAedes aegypti, and the associated dengue risk due to climate change. To fill this gap we used reported dengue fever incidences, the presence of Ae. aegypti, and bioclimatic variables in a species distribution model to assess the current and future (2050 and 2070) climatically suitable areas. High temperatures and with high moisture levels are climatically suitable for the distribution of Ae. aegypti related to dengue fever. Under the current climate scenario indicated that 15.2% of the continent is highly suitable for dengue fever outbreaks. We predict that climatically suitable areas for Ae. aegypti related to dengue fever incidences in eastern, central and western part of Africa will increase in the future and will expand further towards higher elevations. Our projections provide evidence for the changing continental threat of vector-borne diseases and can guide public health policy decisions in Africa to better prepare for and respond to future changes in dengue fever risk.
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Affiliation(s)
- Dejene W Sintayehu
- College of Agriculture and Environmental Sciences, Haramaya University, Dire Dawa, Ethiopia
| | - Nega Tassie
- College of Sciences, Bahir Dar University, Bahir Dar, Ethiopia
| | - Willem F De Boer
- Wildlife Ecology and Conservation Group, Wageningen University, Wageningen, The Netherlands
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Henry S, Mendonça FDA. Past, Present, and Future Vulnerability to Dengue in Jamaica: A Spatial Analysis of Monthly Variations. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:E3156. [PMID: 32369951 PMCID: PMC7246587 DOI: 10.3390/ijerph17093156] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/02/2020] [Revised: 04/11/2020] [Accepted: 04/13/2020] [Indexed: 11/18/2022]
Abstract
Over the years, Jamaica has experienced sporadic cases of dengue fever. Even though the island is vulnerable to dengue, there is paucity in the spatio-temporal analysis of the disease using Geographic Information Systems (GIS) and remote sensing tools. Further, access to time series dengue data at the community level is a major challenge on the island. This study therefore applies the Water-Associated Disease Index (WADI) framework to analyze vulnerability to dengue in Jamaica based on past, current and future climate change conditions using three scenarios: (1) WorldClim rainfall and temperature dataset from 1970 to 2000; (2) Climate Hazard Group InfraRed Precipitation with Station data (CHIRPS) rainfall and land surface temperature (LST) as proxy for air temperature from the Moderate Resolution Imaging Spectroradiometer (MODIS) for the period 2002 to 2016, and (3) maximum temperature and rainfall under the Representative Concentration Pathway (RCP) 8.5 climate change scenario for 2030 downscaled at 25 km based on the Regional Climate Model, RegCM4.3.5. Although vulnerability to dengue varies spatially and temporally, a higher vulnerability was depicted in urban areas in comparison to rural areas. The results also demonstrate the possibility for expansion in the geographical range of dengue in higher altitudes under climate change conditions based on scenario 3. This study provides an insight into the use of data with different temporal and spatial resolution in the analysis of dengue vulnerability.
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Affiliation(s)
- Sheika Henry
- Department of Geography, Federal University of Parana, Curitiba 81531-980, Brazil;
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Zhang J, Yue M, Hu Y, Bergquist R, Su C, Gao F, Cao ZG, Zhang Z. Risk prediction of two types of potential snail habitats in Anhui Province of China: Model-based approaches. PLoS Negl Trop Dis 2020; 14:e0008178. [PMID: 32251421 PMCID: PMC7162538 DOI: 10.1371/journal.pntd.0008178] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 04/16/2020] [Accepted: 02/27/2020] [Indexed: 11/19/2022] Open
Abstract
Elimination of the intermediate snail host of Schistosoma is the most effective way to control schistosomiasis and the most important first step is to accurately identify the snail habitats. Due to the substantial resources required for traditional, manual snail-searching in the field, and potential risk of miss-classification of potential snail habitats by remote sensing, more convenient and precise methods are urgently needed. Snail data (N = 15,000) from two types of snail habitats (lake/marshland and hilly areas) in Anhui Province, a typical endemic area for schistosomiasis, were collected together with 36 environmental variables covering the whole province. Twelve different models were built and evaluated with indices, such as area under the curve (AUC), Kappa, percent correctly classified (PCC), sensitivity and specificity. We found the presence-absence models performing better than those based on presence-only. However, those derived from machine-learning, especially the random forest (RF) approach were preferable with all indices above 0.90. Distance to nearest river was found to be the most important variable for the lake/marshlands, while the climatic variables were more important for the hilly endemic areas. The predicted high-risk areas for potential snail habitats of the lake/marshland type exist mainly along the Yangtze River, while those of the hilly type are dispersed in the areas south of the Yangtze River. We provide here the first comprehensive risk profile of potential snail habitats based on precise examinations revealing the true distribution and habitat type, thereby improving efficiency and accuracy of snail control including better allocation of limited health resources.
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Affiliation(s)
- Jun Zhang
- Department of Epidemiology and Biostatistics, School of Public Health, Fudan University, Key Laboratory of Public Health Safety of Ministry of Education, School of Public Health, Fudan University, Shanghai, China
| | - Ming Yue
- Department of Infectious Diseases, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China
| | - Yi Hu
- Department of Epidemiology and Biostatistics, School of Public Health, Fudan University, Key Laboratory of Public Health Safety of Ministry of Education, School of Public Health, Fudan University, Shanghai, China
| | | | - Chuan Su
- Center for Global Health, Jiangsu Key Laboratory of Pathogen Biology, Department of Pathogen Biology & Immunology, Nanjing Medical University, Jiangning District, Nanjing, Jiangsu, China
| | - Fenghua Gao
- Anhui Institute of Schistosomiasis Control, Hefei, Anhui Province, China
| | - Zhi-Guo Cao
- Anhui Institute of Schistosomiasis Control, Hefei, Anhui Province, China
| | - Zhijie Zhang
- Department of Epidemiology and Biostatistics, School of Public Health, Fudan University, Key Laboratory of Public Health Safety of Ministry of Education, School of Public Health, Fudan University, Shanghai, China
- * E-mail:
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Bhandari D, Bi P, Sherchand JB, Dhimal M, Hanson-Easey S. Climate change and infectious disease research in Nepal: Are the available prerequisites supportive enough to researchers? Acta Trop 2020; 204:105337. [PMID: 31930962 DOI: 10.1016/j.actatropica.2020.105337] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Revised: 01/07/2020] [Accepted: 01/07/2020] [Indexed: 12/15/2022]
Abstract
Although Nepal has been identified as a country highly vulnerable to adverse health and socioeconomic impacts arising from climate change, extant research on climate sensitive infectious diseases has yet to develop the evidence base to adequately address these threats. In this opinion paper we identify and characterise basic requirements that are hindering the progress of climate change and infectious disease research in Nepal. Our opinion is that immediate attention should be given to strengthening Nepal's public health surveillance system, promoting inter-sectoral collaboration, improving public health capacity, and enhancing community engagement in disease surveillance. Moreover, we advocate for greater technical support of public health researchers, and data sharing among data custodians and epidemiologists/researchers, to generate salient evidence to guide relevant public health policy formulation aimed at addressing the impacts of climate change on human health in Nepal. International studies on climate variability and infectious diseases have clearly demonstrated that climate sensitive diseases, namely vector-borne and food/water-borne diseases, are sensitive to climate variation and climate change. This research has driven the development and implementation of climate-based early warning systems for preventing potential outbreaks of climate-sensitive infectious diseases across many European and African countries. Similarly, we postulate that Nepal would greatly benefit from a climate-based early warning system, which would assist in identification or prediction of conditions suitable for disease emergence and facilitate a timely response to reduce mortality and morbidity during epidemics.
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Xu Z, Bambrick H, Frentiu FD, Devine G, Yakob L, Williams G, Hu W. Projecting the future of dengue under climate change scenarios: Progress, uncertainties and research needs. PLoS Negl Trop Dis 2020; 14:e0008118. [PMID: 32119666 PMCID: PMC7067491 DOI: 10.1371/journal.pntd.0008118] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2019] [Revised: 03/12/2020] [Accepted: 02/05/2020] [Indexed: 11/18/2022] Open
Abstract
BACKGROUND Dengue is a mosquito-borne viral disease and its transmission is closely linked to climate. We aimed to review available information on the projection of dengue in the future under climate change scenarios. METHODS Using five databases (PubMed, ProQuest, ScienceDirect, Scopus and Web of Science), a systematic review was conducted to retrieve all articles from database inception to 30th June 2019 which projected the future of dengue under climate change scenarios. In this review, "the future of dengue" refers to disease burden of dengue, epidemic potential of dengue cases, geographical distribution of dengue cases, and population exposed to climatically suitable areas of dengue. RESULTS Sixteen studies fulfilled the inclusion criteria, and five of them projected a global dengue future. Most studies reported an increase in disease burden, a wider spatial distribution of dengue cases or more people exposed to climatically suitable areas of dengue as climate change proceeds. The years 1961-1990 and 2050 were the most commonly used baseline and projection periods, respectively. Multiple climate change scenarios introduced by the Intergovernmental Panel on Climate Change (IPCC), including B1, A1B, and A2, as well as Representative Concentration Pathway 2.6 (RCP2.6), RCP4.5, RCP6.0 and RCP8.5, were most widely employed. Instead of projecting the future number of dengue cases, there is a growing consensus on using "population exposed to climatically suitable areas for dengue" or "epidemic potential of dengue cases" as the outcome variable. Future studies exploring non-climatic drivers which determine the presence/absence of dengue vectors, and identifying the pivotal factors triggering the transmission of dengue in those climatically suitable areas would help yield a more accurate projection for dengue in the future. CONCLUSIONS Projecting the future of dengue requires a systematic consideration of assumptions and uncertainties, which will facilitate the development of tailored climate change adaptation strategies to manage dengue.
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Affiliation(s)
- Zhiwei Xu
- School of Public Health and Social Work, Queensland University of Technology, Brisbane, Australia
- Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia
| | - Hilary Bambrick
- School of Public Health and Social Work, Queensland University of Technology, Brisbane, Australia
- Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia
| | - Francesca D. Frentiu
- School of Biomedical Sciences, Queensland University of Technology, Brisbane, Australia
| | - Gregor Devine
- Mosquito Control Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia
| | - Laith Yakob
- Department of Disease Control, London School of Hygiene and Tropical Medicine, London, United Kingdom
| | - Gail Williams
- School of Public Health, University of Queensland, Brisbane, Australia
| | - Wenbiao Hu
- School of Public Health and Social Work, Queensland University of Technology, Brisbane, Australia
- Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia
- * E-mail:
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Sun J, Qiu H, Guo J, Xu X, Wu D, Zhong L, Jiang B, Jiao J, Yuan W, Huang Y, Shen A, Wang W. Modeling the potential distribution of Zelkova schneideriana under different human activity intensities and climate change patterns in China. Glob Ecol Conserv 2020. [DOI: 10.1016/j.gecco.2019.e00840] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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Adhikari N, Subedi D. The alarming outbreaks of dengue in Nepal. Trop Med Health 2020; 48:5. [PMID: 32055230 PMCID: PMC7007638 DOI: 10.1186/s41182-020-0194-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 02/03/2020] [Indexed: 11/21/2022] Open
Abstract
Dengue is a mosquito-borne viral infection. Since the first reported incidence in 2004, several sporadic outbreaks of dengue have been recorded from both tropical and subtropical regions of Nepal, including the capital city Kathmandu. However, in the last 5 years, the incidence of dengue cases has risen alarmingly. The largest-ever outbreak was reported in 2019, which killed six people. The global warming, unplanned urbanization, increased transportation, and lack of efficient mosquito control are presumably associated with the spread of dengue and its vector to the plane and hilly regions of this country. With the ongoing Nepalese government campaign “Visit Nepal Year 2020” to attract two million tourists in mind, effective dengue control measures must be implemented to control potential future outbreaks.
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Affiliation(s)
- Niran Adhikari
- 1Animal Health Training & Consultancy Services, AHTCS, Pokhara, Nepal
| | - Dinesh Subedi
- 2School of Biological Sciences, Monash University, Melbourne, Australia
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Liu D, Guo S, Zou M, Chen C, Deng F, Xie Z, Hu S, Wu L. A dengue fever predicting model based on Baidu search index data and climate data in South China. PLoS One 2019; 14:e0226841. [PMID: 31887118 PMCID: PMC6936853 DOI: 10.1371/journal.pone.0226841] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Accepted: 12/04/2019] [Indexed: 12/12/2022] Open
Abstract
With the acceleration of global urbanization and climate change, dengue fever is spreading worldwide. Different levels of dengue fever have also occurred in China, especially in southern China, causing enormous economic losses. Unfortunately, there is no effective treatment for dengue, and the most popular dengue vaccine does not exhibit good curative effects. Therefore, we developed a Generalized Additive Mixed Model (GAMM) that gathered climate factors (mean temperature, relative humidity and precipitation) and Baidu search data during 2011-2015 in Guangzhou city to improve the accuracy of dengue fever prediction. Firstly, the time series dengue fever data were decomposed into seasonal, trend and remainder components by the seasonal-trend decomposition procedure based on loess (STL). Secondly, the time lag of variables was determined in cross-correlation analysis and the order of autocorrelation was estimated using autocorrelation (ACF) and partial autocorrelation functions (PACF). Finally, the GAMM was built and evaluated by comparing it with Generalized Additive Mode (GAM). Experimental results indicated that the GAMM (R2: 0.95 and RMSE: 34.1) has a superior prediction capability than GAM (R2: 0.86 and RMSE: 121.9). The study could help the government agencies and hospitals respond early to dengue fever outbreak.
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Affiliation(s)
- Dan Liu
- School of Medicine, Wuhan University of Science and Technology, Wuhan, China
| | - Songjing Guo
- School of Geography and Information Engineering, China University of Geosciences, Wuhan, China
| | - Mingjun Zou
- School of Medicine, Wuhan University of Science and Technology, Wuhan, China
| | - Cong Chen
- School of Medicine, Wuhan University of Science and Technology, Wuhan, China
| | - Fei Deng
- State Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, China
| | - Zhong Xie
- School of Geography and Information Engineering, China University of Geosciences, Wuhan, China
- National Engineering Research Center for GIS, Wuhan, China
| | - Sheng Hu
- School of Geography and Information Engineering, China University of Geosciences, Wuhan, China
| | - Liang Wu
- School of Geography and Information Engineering, China University of Geosciences, Wuhan, China
- National Engineering Research Center for GIS, Wuhan, China
- * E-mail:
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Mapping Environmental Suitability of Scrub Typhus in Nepal Using MaxEnt and Random Forest Models. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2019; 16:ijerph16234845. [PMID: 31810239 PMCID: PMC6926588 DOI: 10.3390/ijerph16234845] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Revised: 11/26/2019] [Accepted: 11/28/2019] [Indexed: 11/17/2022]
Abstract
Being a globally emerging mite-borne zoonotic disease, scrub typhus is a serious public health concern in Nepal. Mapping environmental suitability and quantifying the human population under risk of the disease is important for prevention and control efforts. In this study, we model and map the environmental suitability of scrub typhus using the ecological niche approach, machine learning modeling techniques, and report locations of scrub typhus along with several climatic, topographic, Normalized Difference Vegetation Index (NDVI), and proximity explanatory variables and estimated population under the risk of disease at a national level. Both MaxEnt and RF technique results reveal robust predictive power with test The area under curve (AUC) and true skill statistics (TSS) of above 0.8 and 0.6, respectively. Spatial prediction reveals that environmentally suitable areas of scrub typhus are widely distributed across the country particularly in the low-land Tarai and less elevated river valleys. We found that areas close to agricultural land with gentle slopes have higher suitability of scrub typhus occurrence. Despite several speculations on the association between scrub typhus and proximity to earthquake epicenters, we did not find a significant role of proximity to earthquake epicenters in the distribution of scrub typhus in Nepal. About 43% of the population living in highly suitable areas for scrub typhus are at higher risk of infection, followed by 29% living in suitable areas of moderate-risk, and about 22% living in moderately suitable areas of lower risk. These findings could be useful in selecting priority areas for surveillance and control strategies effectively.
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Talchabhadel R, Karki R. Assessing climate boundary shifting under climate change scenarios across Nepal. ENVIRONMENTAL MONITORING AND ASSESSMENT 2019; 191:520. [PMID: 31359147 DOI: 10.1007/s10661-019-7644-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Accepted: 07/10/2019] [Indexed: 06/10/2023]
Abstract
This study assesses the climate boundary shifts from the historical time to near/mid future by using a slightly modified Köppen-Geiger (KG) classification scheme and presents comprehensive pictures of historical (1960-1990) and projected near/mid future (1950s: 2040-2060/1970s: 2060-2080) climate classes across Nepal. Ensembles of three selected general circulation models (GCMs) under two Representative Concentration Pathways (RCP 4.5 and RCP 8.5) were used for projected future analysis. During the 1950s, annual average temperature is expected to increase by 2.5 °C under RCP 8.5. Similarly, during the 1970s, it is even anticipated to rise by 3.6 °C under RCP 8.5. The rate of temperature rise is higher in the non-monsoon period than in monsoon period. During the 1970s, annual precipitation is projected to increase by 8.1% under RCP 8.5. Even though the precipitation is anticipated to increase in the future in annual scale, winter seasons are estimated to be drier by more than 15%. This study shows significant increments of tropical (Am and Aw) and arid (BSk) climate types and reductions of temperate (Cwa and Cwb) and polar (ET and EF). Noticeably, the reduction of the areal coverage of polar frost (EF) is considerably high. In general, about 50% of the country's area is covered by the temperate climate (Cwa and Cwb) in baseline scenario and it is expected to reduce to 45% under RCP 4.5 and 42.5% under RCP 8.5 during the 1950s, and 42% under RCP 4.5 and 39% under RCP 8.5 during the 1970s. Importantly, the degree of climate boundary shifts is quite higher under RCP 8.5 than RCP 4.5, and likewise, the degree is higher during the 1970s than the 1950s. We believe this study to facilitate the identification of regions in which impacts of climate change are notable for crop production, soil management, and disaster risk reduction, requiring a more detailed assessment of adaptation measures. The assessment of climate boundary shifting can serve as valuable information for stakeholders of many disciplines like water, climate, transport, energy, environment, disaster, development, agriculture, and tourism.
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Affiliation(s)
- Rocky Talchabhadel
- Department of Hydrology and Meteorology, Government of Nepal, Kathmandu, Nepal.
- Disaster Prevention Research Institute, Kyoto University, Kyoto, Japan.
| | - Ramchandra Karki
- Department of Hydrology and Meteorology, Government of Nepal, Kathmandu, Nepal
- Institute of Geography, University of Hamburg, Hamburg, Germany
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Alt KG, Kochmann J, Klimpel S, Cunze S. Improving species distribution models of zoonotic marine parasites. Sci Rep 2019; 9:9851. [PMID: 31285445 PMCID: PMC6614473 DOI: 10.1038/s41598-019-46127-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Accepted: 06/19/2019] [Indexed: 02/05/2023] Open
Abstract
Environmental niche modelling is an acclaimed method for estimating species' present or future distributions. However, in marine environments the assembly of representative data from reliable and unbiased occurrences is challenging. Here, we aimed to model the environmental niche and distribution of marine, parasitic nematodes from the Pseudoterranova decipiens complex using the software Maxent. The distribution of these potentially zoonotic species is of interest, because they infect the muscle tissue of host species targeted by fisheries. To achieve the best possible model, we used two different approaches. The land distance (LD) model was based on abiotic data, whereas the definitive host distance (DHD) model included species-specific biotic data. To assess whether DHD is a suitable descriptor for Pseudoterranova spp., the niches of the parasites and their respective definitive hosts were analysed using ecospat. The performance of LD and DHD was compared based on the variables' contribution to the model. The DHD-model clearly outperformed the LD-model. While the LD-model gave an estimate of the parasites' niches, it only showed the potential distribution. The DHD-model produced an estimate of the species' realised distribution and indicated that biotic variables can help to improve the modelling of data-poor, marine species.
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Affiliation(s)
- Katharina G Alt
- Goethe-University, Institute for Ecology, Evolution and Diversity; Senckenberg Biodiversity and Climate Research Centre, Senckenberg Gesellschaft für Naturforschung; Max-von-Laue-Str. 13, D-60438, Frankfurt/Main, Germany.
| | - Judith Kochmann
- Goethe-University, Institute for Ecology, Evolution and Diversity; Senckenberg Biodiversity and Climate Research Centre, Senckenberg Gesellschaft für Naturforschung; Max-von-Laue-Str. 13, D-60438, Frankfurt/Main, Germany
| | - Sven Klimpel
- Goethe-University, Institute for Ecology, Evolution and Diversity; Senckenberg Biodiversity and Climate Research Centre, Senckenberg Gesellschaft für Naturforschung; Max-von-Laue-Str. 13, D-60438, Frankfurt/Main, Germany
| | - Sarah Cunze
- Goethe-University, Institute for Ecology, Evolution and Diversity; Senckenberg Biodiversity and Climate Research Centre, Senckenberg Gesellschaft für Naturforschung; Max-von-Laue-Str. 13, D-60438, Frankfurt/Main, Germany
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Tuladhar R, Singh A, Varma A, Choudhary DK. Climatic factors influencing dengue incidence in an epidemic area of Nepal. BMC Res Notes 2019; 12:131. [PMID: 30867027 PMCID: PMC6417253 DOI: 10.1186/s13104-019-4185-4] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Accepted: 03/11/2019] [Indexed: 12/14/2022] Open
Abstract
Objective Geographic expansion of dengue incidence has drawn a global interest to identify the influential factors that instigate the spread of this disease. The objective of this study was to find the environmental factors linked to dengue incidence in a dengue epidemic area of Nepal by negative binomial models using climatic factors from 2010 to 2017. Results Minimum temperature at lag 2 months, maximum temperature and relative humidity without lag period significantly affected dengue incidence. Rainfall was not associated with dengue incidence in Chitwan district of Nepal. The incident rate ratio (IRR) of dengue case rise by more than 1% for every unit increase in minimum temperature at lag 2 months, maximum temperature and relative humidity, but decrease by .759% for maximum temperature at lag 3 months. Considering the effect of minimum temperature of previous months on dengue incidence, the vector control and dengue management program should be implemented at least 2 months ahead of dengue outbreak season. Electronic supplementary material The online version of this article (10.1186/s13104-019-4185-4) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Reshma Tuladhar
- Central Department of Microbiology, Tribhuvan University, Kathmandu, Nepal. .,Amity Institute of Microbial Technology, Amity University, Noida, UP, India.
| | - Anjana Singh
- Central Department of Microbiology, Tribhuvan University, Kathmandu, Nepal
| | - Ajit Varma
- Amity Institute of Microbial Technology, Amity University, Noida, UP, India
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Ryan SJ, Carlson CJ, Mordecai EA, Johnson LR. Global expansion and redistribution of Aedes-borne virus transmission risk with climate change. PLoS Negl Trop Dis 2019; 13:e0007213. [PMID: 30921321 PMCID: PMC6438455 DOI: 10.1371/journal.pntd.0007213] [Citation(s) in RCA: 376] [Impact Index Per Article: 75.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2018] [Accepted: 02/04/2019] [Indexed: 12/22/2022] Open
Abstract
Forecasting the impacts of climate change on Aedes-borne viruses-especially dengue, chikungunya, and Zika-is a key component of public health preparedness. We apply an empirically parameterized model of viral transmission by the vectors Aedes aegypti and Ae. albopictus, as a function of temperature, to predict cumulative monthly global transmission risk in current climates, and compare them with projected risk in 2050 and 2080 based on general circulation models (GCMs). Our results show that if mosquito range shifts track optimal temperature ranges for transmission (21.3-34.0°C for Ae. aegypti; 19.9-29.4°C for Ae. albopictus), we can expect poleward shifts in Aedes-borne virus distributions. However, the differing thermal niches of the two vectors produce different patterns of shifts under climate change. More severe climate change scenarios produce larger population exposures to transmission by Ae. aegypti, but not by Ae. albopictus in the most extreme cases. Climate-driven risk of transmission from both mosquitoes will increase substantially, even in the short term, for most of Europe. In contrast, significant reductions in climate suitability are expected for Ae. albopictus, most noticeably in southeast Asia and west Africa. Within the next century, nearly a billion people are threatened with new exposure to virus transmission by both Aedes spp. in the worst-case scenario. As major net losses in year-round transmission risk are predicted for Ae. albopictus, we project a global shift towards more seasonal risk across regions. Many other complicating factors (like mosquito range limits and viral evolution) exist, but overall our results indicate that while climate change will lead to increased net and new exposures to Aedes-borne viruses, the most extreme increases in Ae. albopictus transmission are predicted to occur at intermediate climate change scenarios.
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Affiliation(s)
- Sadie J. Ryan
- Department of Geography, University of Florida, Gainesville, Florida, United States of America
- Emerging Pathogens Institute, University of Florida, Gainesville, Florida, United States of America
- School of Life Sciences, University of KwaZulu-Natal, Durban, South Africa
| | - Colin J. Carlson
- Department of Biology, Georgetown University, Washington, DC, United States of America
- National Socio-Environmental Synthesis Center, University of Maryland, Annapolis, Maryland, United States of America
| | - Erin A. Mordecai
- Department of Biology, Stanford University, Stanford, California, United States of America
| | - Leah R. Johnson
- Department of Statistics, Virginia Polytechnic and State University, Blacksburg, Virginia, United States of America
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Badia-Rius X, Betts H, Molyneux DH, Kelly-Hope LA. Environmental factors associated with the distribution of Loa loa vectors Chrysops spp. in Central and West Africa: seeing the forest for the trees. Parasit Vectors 2019; 12:72. [PMID: 30728063 PMCID: PMC6366063 DOI: 10.1186/s13071-019-3327-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Accepted: 01/29/2019] [Indexed: 11/16/2022] Open
Abstract
BACKGROUND Loiasis is caused by the filarial parasite Loa loa, which is widespread through Central and West Africa and largely confined the tropical equatorial rainforests. The tabanid flies Chrysops silacea and Chrysops dimidiata are the main vectors driving transmission. This study aimed to better define the spatial distribution and ecological niche of the two vectors to help define spatial-temporal risk and target appropriate, timely intervention strategies for filariasis control and elimination programmes. METHODS Chrysops spp. distributions were determined by collating information from the published literature into a database, detailing the year, country, locality, latitude/longitude and species collected. Environmental factors including climate, elevation and tree canopy characteristics were summarised for each vector from data obtained from satellite modelled data or imagery, which were also used to identify areas with overt landcover changes. The presence of each Chrysops vector was predicted using a maximum entropy species distribution modelling (MaxEnt) method. RESULTS A total of 313 location-specific data points from 59 published articles were identified across seven loiasis endemic countries. Of these, 186 sites were included in the climate and elevation analysis, and due to overt landcover changes, 83 sites included in tree canopy analysis and MaxEnt model. Overall, C. silacea and C. dimidiata were found to have similar ranges; annual mean temperature (24.6 °C and 24.1 °C, respectively), annual precipitation (1848.6 mm and 1868.8 mm), elevation (368.8 m and 400.6 m), tree canopy cover (61.4% and 66.9%) and tree canopy height (22.4 m and 25.1 m). MaxEnt models found tree canopy coverage was a significant environmental variable for both vectors. CONCLUSIONS The Chrysops spp. database and large-scale environmental analysis provides insights into the spatial and ecological parameters of the L. loa vectors driving transmission. These may be used to further delineate loiasis risk, which will be important for implementing filariasis control and elimination programmes in the equatorial rainforest region of Central and West Africa.
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Affiliation(s)
- Xavier Badia-Rius
- Department of Tropical Disease Biology, Liverpool School of Tropical Medicine, Liverpool, UK
| | - Hannah Betts
- Department of Tropical Disease Biology, Liverpool School of Tropical Medicine, Liverpool, UK
| | - David H. Molyneux
- Department of Tropical Disease Biology, Liverpool School of Tropical Medicine, Liverpool, UK
| | - Louise A. Kelly-Hope
- Department of Tropical Disease Biology, Liverpool School of Tropical Medicine, Liverpool, UK
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Liu B, Gao X, Ma J, Jiao Z, Xiao J, Wang H. Influence of Host and Environmental Factors on the Distribution of the Japanese Encephalitis Vector Culex tritaeniorhynchus in China. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2018; 15:ijerph15091848. [PMID: 30150565 PMCID: PMC6165309 DOI: 10.3390/ijerph15091848] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/04/2018] [Revised: 08/23/2018] [Accepted: 08/25/2018] [Indexed: 12/16/2022]
Abstract
Culex tritaeniorhynchus is an important vector that transmits a variety of human and animal diseases. Japanese encephalitis (JE), an endemic disease in the Asia-Pacific region, is primarily transmitted by Cx. tritaeniorhynchus. Insufficient monitoring of vector mosquitoes has led to a poor understanding of the distribution of Cx. tritaeniorhynchus in China. To delineate the habitat of Cx. tritaeniorhynchus and any host and environmental factors that affect its distribution, we used a maximum entropy modeling method to predict its distribution in China. Our models provided high resolution predictions on the potential distribution of Cx. tritaeniorhynchus. The predicted suitable habitats of the JE vector were correlated with areas of high JE incidence in parts of China. Factors driving the distribution of Cx. tritaeniorhynchus in China were also revealed by our models. Furthermore, human population density and the maximum NDVI were the most important predictors in our models. Bioclimate factors and elevation also significantly impacted the distribution of Cx. tritaeniorhynchus. Our findings may serve as a reference for vector and disease control.
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Affiliation(s)
- Boyang Liu
- Department of Veterinary Surgery, College of Veterinary Medicine, Northeast Agricultural University, Harbin 150030, China.
| | - Xiang Gao
- Department of Veterinary Surgery, College of Veterinary Medicine, Northeast Agricultural University, Harbin 150030, China.
| | - Jun Ma
- Department of Veterinary Surgery, College of Veterinary Medicine, Northeast Agricultural University, Harbin 150030, China.
| | - Zhihui Jiao
- Department of Veterinary Surgery, College of Veterinary Medicine, Northeast Agricultural University, Harbin 150030, China.
| | - Jianhua Xiao
- Department of Veterinary Surgery, College of Veterinary Medicine, Northeast Agricultural University, Harbin 150030, China.
| | - Hongbin Wang
- Department of Veterinary Surgery, College of Veterinary Medicine, Northeast Agricultural University, Harbin 150030, China.
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Temporal Variations and Associated Remotely Sensed Environmental Variables of Dengue Fever in Chitwan District, Nepal. ISPRS INTERNATIONAL JOURNAL OF GEO-INFORMATION 2018. [DOI: 10.3390/ijgi7070275] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Dengue fever is one of the leading public health problems of tropical and subtropical countries across the world. Transmission dynamics of dengue fever is largely affected by meteorological and environmental factors, and its temporal pattern generally peaks in hot-wet periods of the year. Despite this continuously growing problem, the temporal dynamics of dengue fever and associated potential environmental risk factors are not documented in Nepal. The aim of this study was to fill this research gap by utilizing epidemiological and earth observation data in Chitwan district, one of the frequent dengue outbreak areas of Nepal. We used laboratory confirmed monthly dengue cases as a dependent variable and a set of remotely sensed meteorological and environmental variables as explanatory factors to describe their temporal relationship. Descriptive statistics, cross correlation analysis, and the Poisson generalized additive model were used for this purpose. Results revealed that dengue fever is significantly associated with satellite estimated precipitation, normalized difference vegetation index (NDVI), and enhanced vegetation index (EVI) synchronously and with different lag periods. However, the associations were weak and insignificant with immediate daytime land surface temperature (dLST) and nighttime land surface temperature (nLST), but were significant after 4–5 months. Conclusively, the selected Poisson generalized additive model based on the precipitation, dLST, and NDVI explained the largest variation in monthly distribution of dengue fever with minimum Akaike’s Information Criterion (AIC) and maximum R-squared. The best fit model further significantly improved after including delayed effects in the model. The predicted cases were reasonably accurate based on the comparison of 10-fold cross validation and observed cases. The lagged association found in this study could be useful for the development of remote sensing-based early warning forecasts of dengue fever.
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McGushin A, Tcholakov Y, Hajat S. Climate Change and Human Health: Health Impacts of Warming of 1.5 °C and 2 °C. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2018; 15:E1123. [PMID: 29857466 PMCID: PMC6025259 DOI: 10.3390/ijerph15061123] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 05/26/2018] [Accepted: 05/29/2018] [Indexed: 11/29/2022]
Abstract
In December 2015, a historic agreement was reached at the Paris Climate Conference for the first-ever global deal to reduce greenhouse gas emissions.[...].
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Affiliation(s)
- Alice McGushin
- Faculty of Public Health & Policy, London School of Hygiene & Tropical Medicine, London WC1H 9SH, UK.
| | - Yassen Tcholakov
- Faculty of Public Health & Policy, London School of Hygiene & Tropical Medicine, London WC1H 9SH, UK.
- Department of Epidemiology, Biostatistics & Occupational Health McGill University, Montreal, QC H3A 1A2, Canada.
| | - Shakoor Hajat
- Faculty of Public Health & Policy, London School of Hygiene & Tropical Medicine, London WC1H 9SH, UK.
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