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Morgan BST, Tian G, Oladeji OO, Cox AE, Granato TC, Zhang H, Podczerwinski EW. Analysis of effects and factors linked to soil microbial populations and nitrogen cycling under long-term biosolids application. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 934:173216. [PMID: 38776785 DOI: 10.1016/j.scitotenv.2024.173216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 05/10/2024] [Accepted: 05/11/2024] [Indexed: 05/25/2024]
Abstract
Information about impacts of long-term biosolids application on soil microbial populations and functional groups and N cycling is important for evaluating soil health and agroecosystem sustainability under long-term biosolids application. Mine spoil plots received annual biosolids application from 1973 to 2010 at low (16.8 Mg ha-1 yr-1), medium (33.6 Mg ha-1 yr-1), and high rates (67.2 Mg ha-1 yr-1). A no-biosolids control received chemical fertilizer at the agronomic rate. Soil samples were collected in three seasons per year spanning 2003-2005 for measuring soil moisture, pH, soil organic C (SOC), total and extractable heavy metals (Cd, Cu, Ni, Zn), NO3-, N mineralization potential (NMP), microbial biomass C (MBC), and populations of three N-cycling bacteria (NCB) groups: ammonia-oxidizing bacteria (AOB), nitrite-oxidizing bacteria (NOB), and denitrifying bacteria (DNB). Soil samples were collected again in 2008 and 2010 for quantifying total and extractable heavy metals, and in 2018 (eight years after biosolids applications ended) for measuring SOC, MBC, NMP, and microbial respiration. During 2003-2005, mean MBC was 315, 554, 794, and 1001 mg kg-1 in the control, low, medium, and high biosolids treatments, respectively. Populations of NCB did not differ among treatments. Biosolids application increased total and extractable metal concentrations but the effect of biosolids rates were much lower on extractable than total concentrations. Soil extractable Cd and Cu concentrations decreased from medium to high applications, likely due to complexing with biosolids organic matter. Partial least squares regression analysis identified a strong positive effect on MBC of SOC and a weak negative effect of Cu, explaining the strong net positive effect of biosolids on MBC. In 2018, the medium and high biosolids treatments maintained higher SOC, MBC, NMP, and microbial respiration than the control. This study provided further evidence that long-term biosolids application has positive effects on soil microbes that persist for years after ending application.
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Affiliation(s)
- Benjamin S T Morgan
- Monitoring and Research Department, Metropolitan Water Reclamation District of Greater Chicago, 6001 West Pershing Road, Cicero, IL 60804, USA.
| | - Guanglong Tian
- Monitoring and Research Department, Metropolitan Water Reclamation District of Greater Chicago, 6001 West Pershing Road, Cicero, IL 60804, USA
| | - Olawale O Oladeji
- Monitoring and Research Department, Metropolitan Water Reclamation District of Greater Chicago, 6001 West Pershing Road, Cicero, IL 60804, USA
| | - Albert E Cox
- Monitoring and Research Department, Metropolitan Water Reclamation District of Greater Chicago, 6001 West Pershing Road, Cicero, IL 60804, USA
| | - Thomas C Granato
- Monitoring and Research Department, Metropolitan Water Reclamation District of Greater Chicago, 6001 West Pershing Road, Cicero, IL 60804, USA
| | - Heng Zhang
- Monitoring and Research Department, Metropolitan Water Reclamation District of Greater Chicago, 6001 West Pershing Road, Cicero, IL 60804, USA
| | - Edward W Podczerwinski
- Monitoring and Research Department, Metropolitan Water Reclamation District of Greater Chicago, 6001 West Pershing Road, Cicero, IL 60804, USA
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Araujo ASF, de Medeiros EV, da Costa DP, Pereira APDA, Mendes LW. From desertification to restoration in the Brazilian semiarid region: Unveiling the potential of land restoration on soil microbial properties. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 351:119746. [PMID: 38071918 DOI: 10.1016/j.jenvman.2023.119746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2023] [Revised: 11/10/2023] [Accepted: 11/29/2023] [Indexed: 01/14/2024]
Abstract
Land desertification poses a significant challenge in the Brazilian semiarid region, encompassing a substantial portion of the country. Within this region, the detrimental effects of human activities, particularly unsuitable anthropic actions, have resulted in diminished vegetation cover and an accelerated rate of soil erosion. Notably, practices such as overgrazing and the conversion of native forests into pasturelands have played a pivotal role in exacerbating the process of land desertification. Ultimately, land desertification results in significant losses of soil organic matter and microbial diversity. To address this pressing issue and contribute to the existing literature, various land restoration practices, such as grazing exclusion, cover crops, and terracing, have been implemented in the Brazilian semiarid. These practices have shown promising results in terms of enhancing soil fertility and restoring microbial properties. Nonetheless, their effectiveness in improving soil microbial properties in the Brazilian semiarid region remains a subject of ongoing study. Recent advances in molecular techniques have improved our understanding of microbial communities in lands undergoing desertification and restoration. In this review, we focus on assessing the effectiveness of these restoration practices in revitalizing soil microbial properties, with a particular emphasis on the soil microbiome and its functions. Through a critical assessment of the impact of these practices on soil microbial properties, our research aims to provide valuable insights that can help mitigate the adverse effects of desertification and promote sustainable development in this ecologically sensitive region.
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Affiliation(s)
| | | | - Diogo Paes da Costa
- Federal University of the Agreste of Pernambuco, Garanhuns, Pernambuco, Brazil
| | | | - Lucas William Mendes
- Center for Nuclear Energy in Agriculture, University of Sao Paulo, Piracicaba, São Paulo, Brazil
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Jia J, Hu G, Ni G, Xie M, Li R, Wang G, Zhang J. Bacteria drive soil multifunctionality while fungi are effective only at low pathogen abundance. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167596. [PMID: 37802347 DOI: 10.1016/j.scitotenv.2023.167596] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 09/21/2023] [Accepted: 10/03/2023] [Indexed: 10/08/2023]
Abstract
The positive correlation between soil biodiversity and multifunctionality has gained widespread recognition. However, the impact of plant pathogens on soil multifunctionality and its relationship with microbial diversity remains understudied. To address this knowledge gap, we collected soil samples from three Hami melon (Cucumis melo L.) planting sites with varying monoculture durations (1, 3, and 5 years). We sequenced the bacterial and fungal communities in these samples and quantified multifunctionality. The results revealed a significant increase in the relative abundance of fungal pathogens over the years of planting, which influenced the correlations between microbial diversity and multifunctionality at a threshold value of 0.01. Both bacterial and fungal richness positively influenced multifunctionality when fungal pathogen abundance was low (< 0.01), whereas only bacterial richness showed a positive correlation with multifunctionality under high fungal pathogen abundance (> 0.01) conditions. Both bacterial and fungal communities were primarily governed by deterministic processes. However, only bacterial community assembly drove soil multifunctionality, showing positive correlations with multifunctionality dissimilarity under low fungal pathogen abundance condition and negative correlations under high fungal pathogen abundance condition, reflecting distinct pathogen pressures. Structural equaling modeling further confirmed the distinct roles of bacterial and fungal richness and composition in promoting multifunctionality under different fungal pathogen condition. Our findings provide evidence that shifts in fungal pathogen abundance alter the balance and interactions between biodiversity and multifunctionality and highlight the importance of engineering biotic interactions in determining soil functioning in agroecosystems.
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Affiliation(s)
- Jiyu Jia
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing 100193, China; Department of Soil Quality, Wageningen University & Research, P.O. Box 47, 6700AA Wageningen, the Netherlands
| | - Guozhi Hu
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing 100193, China; Hami Melon Research Center, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China
| | - Gang Ni
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing 100193, China
| | - Muxi Xie
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing 100193, China
| | - Ruipeng Li
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing 100193, China
| | - Guangzhou Wang
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing 100193, China.
| | - Junling Zhang
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing 100193, China
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Pino V, Fajardo M, McBratney A, Minasny B, Wilson N, Baldock C. Australian soil microbiome: A first sightseeing regional prediction driven by cycles of soil temperature and pedogenic variations. Mol Ecol 2023; 32:6243-6259. [PMID: 36862079 DOI: 10.1111/mec.16911] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2021] [Revised: 02/05/2023] [Accepted: 02/27/2023] [Indexed: 03/03/2023]
Abstract
Declines in soil multifunctionality (e.gsoil capacity to provide food and energy) are closely related to changes in the soil microbiome (e.g., diversity) Determining ecological drivers promoting such microbiome changes is critical knowledge for protecting soil functions. However, soil-microbe interactions are highly variable within environmental gradients and may not be consistent across studies. Here we propose that analysis of community dissimilarity (β-diversity) is a valuable tool for overviewing soil microbiome spatiotemporal changes. Indeed, β-diversity studies at larger scales (modelling and mapping) simplify complex multivariate interactions and refine our understanding of ecological drivers by also giving the possibility of expanding the environmental scenarios. This study represents the first spatial investigation of β-diversity in the soil microbiome of New South Wales (800,642 km2 ), Australia. We used metabarcoding soil data (16S rRNA and ITS genes) as exact sequence variants (ASVs) and UMAP (Uniform Manifold Approximation and Projection) as the distance metric. β-Diversity maps (1000-m resolution)-concordance correlations of 0.91-0.96 and 0.91-0.95 for bacteria and fungi, respectively-showed soil biome dissimilarities driven primarily by soil chemistry-pH and effective cation exchange capacity (ECEC)-and cycles of soil temperature-land surface temperature (LST-phase and LST-amplitude). Regionally, the spatial patterns of microbes parallel the distribution of soil classes (e.g., Vertosols) beyond spatial distances and rainfall, for example. Soil classes can be valuable discriminants for monitoring approaches, for example pedogenons and pedophenons. Ultimately, cultivated soils exhibited lower richness due to declines in rare microbes which might compromise soil functions over time.
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Affiliation(s)
- Vanessa Pino
- School of Life and Environmental Sciences & Sydney Institute of Agriculture, Faculty of Science, The University of Sydney, Sydney, New South Wales, Australia
| | - Mario Fajardo
- School of Life and Environmental Sciences & Sydney Institute of Agriculture, Faculty of Science, The University of Sydney, Sydney, New South Wales, Australia
| | - Alex McBratney
- School of Life and Environmental Sciences & Sydney Institute of Agriculture, Faculty of Science, The University of Sydney, Sydney, New South Wales, Australia
| | - Budiman Minasny
- School of Life and Environmental Sciences & Sydney Institute of Agriculture, Faculty of Science, The University of Sydney, Sydney, New South Wales, Australia
| | - Neil Wilson
- Metagenomic Laboratory, Metagen Pty, Ltd., Gatton, Queensland, Australia
| | - Chris Baldock
- Metagenomic Laboratory, Metagen Pty, Ltd., Gatton, Queensland, Australia
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Ladau J, Ramirez KS. A global catalogue of plant-beneficial bacteria. NATURE FOOD 2023; 4:933-934. [PMID: 37904025 DOI: 10.1038/s43016-023-00877-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/01/2023]
Affiliation(s)
- Joshua Ladau
- Department of Computational Precision Health, University of California, San Francisco, CA, USA.
| | - Kelly S Ramirez
- Department of Biological Sciences, University of Texas at El Paso, El Paso, TX, USA
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Silva V, Gai L, Harkes P, Tan G, Ritsema CJ, Alcon F, Contreras J, Abrantes N, Campos I, Baldi I, Bureau M, Christ F, Mandrioli D, Sgargi D, Pasković I, Polić Pasković M, Glavan M, Hofman J, Huerta Lwanga E, Norgaard T, Bílková Z, Osman R, Khurshid C, Navarro I, de la Torre A, Sanz P, Ángeles Martínez M, Dias J, Mol H, Gort G, Martins Figueiredo D, Scheepers PTJ, Schlünssen V, Vested A, Alaoui A, Geissen V. Pesticide residues with hazard classifications relevant to non-target species including humans are omnipresent in the environment and farmer residences. ENVIRONMENT INTERNATIONAL 2023; 181:108280. [PMID: 37924602 DOI: 10.1016/j.envint.2023.108280] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 10/16/2023] [Accepted: 10/19/2023] [Indexed: 11/06/2023]
Abstract
Intensive and widespread use of pesticides raises serious environmental and human health concerns. The presence and levels of 209 pesticide residues (active substances and transformation products) in 625 environmental samples (201 soil, 193 crop, 20 outdoor air, 115 indoor dust, 58 surface water, and 38 sediment samples) have been studied. The samples were collected during the 2021 growing season, across 10 study sites, covering the main European crops, and conventional and organic farming systems. We profiled the pesticide residues found in the different matrices using existing hazard classifications towards non-target organisms and humans. Combining monitoring data and hazard information, we developed an indicator for the prioritization of pesticides, which can support policy decisions and sustainable pesticide use transitions. Eighty-six percent of the samples had at least one residue above the respective limit of detection. One hundred residues were found in soil, 112 in water, 99 in sediments, 78 in crops, 76 in outdoor air, and 197 in indoor dust. The number, levels, and profile of residues varied between farming systems. Our results show that non-approved compounds still represent a significant part of environmental cocktails and should be accounted for in monitoring programs and risk assessments. The hazard profiles analysis confirms the dominance of compounds of low-moderate hazard and underscores the high hazard of some approved compounds and recurring "no data available" situations. Overall, our results support the idea that risk should be assessed in a mixture context, taking environmentally relevant mixtures into consideration. We have uncovered uncertainties and data gaps that should be addressed, as well as the policy implications at the EU approval status level. Our newly introduced indicator can help identify research priority areas, and act as a reference for targeted scenarios set forth in the Farm to Fork pesticide reduction goals.
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Affiliation(s)
- Vera Silva
- Soil Physics and Land Management Group, Wageningen University & Research, Netherlands
| | - Lingtong Gai
- Soil Physics and Land Management Group, Wageningen University & Research, Netherlands.
| | - Paula Harkes
- Soil Physics and Land Management Group, Wageningen University & Research, Netherlands
| | - Gaowei Tan
- Soil Physics and Land Management Group, Wageningen University & Research, Netherlands
| | - Coen J Ritsema
- Soil Physics and Land Management Group, Wageningen University & Research, Netherlands
| | - Francisco Alcon
- Agricultural Engineering School, Universidad Politécnica de Cartagena, Spain
| | - Josefa Contreras
- Agricultural Engineering School, Universidad Politécnica de Cartagena, Spain
| | - Nelson Abrantes
- CESAM and Department of Biology, University of Aveiro, Portugal
| | - Isabel Campos
- CESAM and Department of Biology, University of Aveiro, Portugal
| | - Isabelle Baldi
- Univ. Bordeaux, INSERM, BPH, U1219, F-33000 Bordeaux, France
| | - Mathilde Bureau
- Univ. Bordeaux, INSERM, BPH, U1219, F-33000 Bordeaux, France
| | - Florian Christ
- Institute of Geography, University of Bern, Hallerstrasse 12, 3012 Bern, Switzerland
| | | | - Daria Sgargi
- Cesare Maltoni Cancer Research Center, Ramazzini Institute, Italy
| | - Igor Pasković
- Department of Agriculture and Nutrition, Institute of Agriculture and Tourism, K. Huguesa 8, 52440 Poreč, Croatia
| | - Marija Polić Pasković
- Department of Agriculture and Nutrition, Institute of Agriculture and Tourism, K. Huguesa 8, 52440 Poreč, Croatia
| | - Matjaž Glavan
- Agronomy Department, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000 Ljubljana, Slovenia
| | - Jakub Hofman
- RECETOX, Faculty of Science, Masaryk University, Brno, The Czech Republic
| | | | - Trine Norgaard
- Department of Agroecology, Aarhus University, Blichers Allé 20, 8830 Tjele, Denmark
| | - Zuzana Bílková
- RECETOX, Faculty of Science, Masaryk University, Brno, The Czech Republic
| | - Rima Osman
- Soil Physics and Land Management Group, Wageningen University & Research, Netherlands
| | - Chrow Khurshid
- Soil Physics and Land Management Group, Wageningen University & Research, Netherlands
| | - Irene Navarro
- Unit of POPs and Emerging Pollutants in Environment, Department of Environment, CIEMAT, Madrid, Spain
| | - Adrián de la Torre
- Unit of POPs and Emerging Pollutants in Environment, Department of Environment, CIEMAT, Madrid, Spain
| | - Paloma Sanz
- Unit of POPs and Emerging Pollutants in Environment, Department of Environment, CIEMAT, Madrid, Spain
| | - María Ángeles Martínez
- Unit of POPs and Emerging Pollutants in Environment, Department of Environment, CIEMAT, Madrid, Spain
| | - Jonatan Dias
- Wageningen Food Safety Research (WFSR), part of Wageningen University & Research, Wageningen, The Netherlands
| | - Hans Mol
- Wageningen Food Safety Research (WFSR), part of Wageningen University & Research, Wageningen, The Netherlands
| | - Gerrit Gort
- Biometris, Wageningen University, The Netherlands
| | | | - Paul T J Scheepers
- Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, the Netherlands
| | - Vivi Schlünssen
- Department of Public Health, Research Unit for Environment, Occupation and Health, Danish Ramazzini Centre, Aarhus University, Aarhus, Denmark
| | - Anne Vested
- Department of Public Health, Research Unit for Environment, Occupation and Health, Danish Ramazzini Centre, Aarhus University, Aarhus, Denmark
| | - Abdallah Alaoui
- Institute of Geography, University of Bern, Hallerstrasse 12, 3012 Bern, Switzerland
| | - Violette Geissen
- Soil Physics and Land Management Group, Wageningen University & Research, Netherlands
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Jiang Y, Zhu W, Zhu K, Ge Y, Li W, Liao N. Similarities and differences in the microbial structure of surface soils of different vegetation types. PeerJ 2023; 11:e16260. [PMID: 37872953 PMCID: PMC10590577 DOI: 10.7717/peerj.16260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 09/18/2023] [Indexed: 10/25/2023] Open
Abstract
Background Soil microbial community diversity serves as a highly sensitive indicator for assessing the response of terrestrial ecosystems to various changes, and it holds significant ecological relevance in terms of indicating ecological alterations. At the global scale, vegetation type acts as a major driving force behind the diversity of soil microbial communities, encompassing both bacterial and fungal components. Modifications in vegetation type not only induce transformations in the visual appearance of land, but also influence the soil ecosystem's material cycle and energy flow, resulting in substantial impacts on the composition and performance of soil microbes. Methods In order to examine the disparities in the structure and diversity of soil microbial communities across distinct vegetation types, we opted to utilize sample plots representing four specific vegetation types. These included a woodland with the dominant tree species Drypetes perreticulata, a woodland with the dominant tree species Horsfieldia hainanensis, a Zea mays farmland and a Citrus reticulata fields. Through the application of high-throughput sequencing, the 16S V3_V4 region of soil bacteria and the ITS region of fungi were sequenced in this experiment. Subsequently, a comparative analysis was conducted to explore and assess the structure and dissimilarities of soil bacterial and fungal communities of the four vegetation types were analyzed comparatively. Results Our findings indicated that woodland soil exhibit a higher richness of microbial diversity compared to farmland soils. There were significant differences between woodland and farmland soil microbial community composition. However, all four dominant phyla of soil fungi were Ascomycota across the four vegetation types, but the bacterial dominant phyla were different in the two-farmland soil microbial communities with the highest similarity. Furthermore, we established a significant correlation between the nutrient content of different vegetation types and the relative abundance of soil microorganisms at both phyla and genus levels. This experiment serves as a crucial step towards unraveling the intricate relationships between plants, soil microbes, and soil, as well as understanding the underlying driving mechanism.
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Affiliation(s)
- Yong Jiang
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Guangxi Normal University, Ministry of Education, Guilin, China
| | - Wenxu Zhu
- College of Forestry, Shenyang Agricultual University, Shenyang, China
| | - Keye Zhu
- College of Forestry, Shenyang Agricultual University, Shenyang, China
| | - Yang Ge
- College of Forestry, Shenyang Agricultual University, Shenyang, China
| | - Wuzheng Li
- Guangxi Fangcheng Golden Camellias National Nature Reserve, Fangchenggang, China
| | - Nanyan Liao
- Guangxi Fangcheng Golden Camellias National Nature Reserve, Fangchenggang, China
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Makhdumi W, Shwetha HR, Dwarakish GS. Soil erosion in diverse agroecological regions of India: a comprehensive review of USLE-based modelling. ENVIRONMENTAL MONITORING AND ASSESSMENT 2023; 195:1112. [PMID: 37648877 DOI: 10.1007/s10661-023-11687-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2023] [Accepted: 08/07/2023] [Indexed: 09/01/2023]
Abstract
Soil erosion caused by water refers to the removal of topsoil by rainfall and runoff. Proper selection of an assessment method is crucial for quantifying the spatial variance of soil erosion. The Universal Soil Loss Equation (USLE) and its revised version (RUSLE) are widely used for modelling soil erosion. This study aimed to evaluate the effectiveness of the USLE-based soil erosion modelling in different agroecological regions of India, identify potential issues, and provide suggestions for future applications. The review revealed that little attention has been given to estimate soil erosion in high-priority land degradation regions of India. Additionally, many studies failed to thoroughly verify the authenticity of stated soil loss rates in their research regions either by overestimating or underestimating at least one of the five soil loss parameters. Furthermore, flaws in the application of methods to calculate these parameters leading to erroneous values were identified and suggestions for improvement were made. The USLE-based soil erosion modelling is an effective tool for quantifying soil erosion risk, but researchers should put emphasis on thoroughly verifying the methodologies adopted, unit conversions, and data availability for the estimation of soil loss parameters to improve the accuracy of their final results. This paper provides valuable insights to assist researchers in implementing USLE-based erosion models in diverse agroecological regions in India and elsewhere. However, for effective soil conservation and sustainable agriculture, further research is necessary to develop efficient techniques for using USLE-based soil erosion modelling to achieve a comprehensive understanding of erosion risk across different agroecological regions.
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Affiliation(s)
- W Makhdumi
- Department of Water Resources and Ocean Engineering, National Institute of Technology Karnataka, Surathkal, 575025, India.
| | - H R Shwetha
- Department of Water Resources and Ocean Engineering, National Institute of Technology Karnataka, Surathkal, 575025, India
| | - G S Dwarakish
- Department of Water Resources and Ocean Engineering, National Institute of Technology Karnataka, Surathkal, 575025, India
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Singh S, Singh S, Lukas SB, Machado S, Nouri A, Calderon F, Rieke ER, Cappellazzi SB. Long-term agro-management strategies shape soil bacterial community structure in dryland wheat systems. Sci Rep 2023; 13:13929. [PMID: 37626146 PMCID: PMC10457325 DOI: 10.1038/s41598-023-41216-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Accepted: 08/23/2023] [Indexed: 08/27/2023] Open
Abstract
Soil microbes play a crucial role in soil organic matter decomposition and nutrient cycling and are influenced by management practices. Therefore, quantifying the impacts of various agricultural management practices on soil microbiomes and their activity is crucial for making informed management decisions. This study aimed to assess the impact of various management systems on soil bacterial abundance and diversity, soil enzyme activities and carbon mineralization potential in wheat-based systems. To accomplish this, soil samples from 0 to 15 cm depth were collected from ongoing long-term field trials in eastern Oregon region under wheat (Triticum aestivum L.)-fallow (WF), WF with different tillage (WT), wheat-pea (Pisum sativum L.) (WP), WF under different crop residue management (CR) and natural undisturbed/unmanaged grassland pasture (GP). These trials consisted of an array of treatments like tillage intensities, nitrogen rates, organic amendments, and seasonal residue burning. This study was a part of the Soil Health Institute's North American Project to Evaluate Soil Health measurements (NAPESHM). Bacterial community structure was determined using amplicon sequencing of the V4 region of 16SrRNA genes and followed the protocols of the Earth Microbiome Project. In addition, extracellular enzyme activities, and carbon mineralization potential (1d-CO2) were measured. Among different trials, 1d-CO2 in WT, WP, and CR studies averaged 53%, 51% and 87% lower than GP systems, respectively. Enzyme activities were significantly greater in GP compared to the other managements and followed similar trend as respiration. We observed higher evenness in GP and higher richness in spring residue burning treatment of CR study. Our results indicated that species evenness is perhaps a better indicator of soil health in comparison to other indices in dryland wheat systems.
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Affiliation(s)
- Shikha Singh
- Hermiston Agricultural Research and Extension Center, Oregon State University, 2121 S 1St, Hermiston, OR, 97838, USA
| | - Surendra Singh
- Columbia Basin Agricultural Research Center, Oregon State University, 48037 Tubbs Ranch Rd., Adams, OR, 97810, USA
| | - Scott B Lukas
- Hermiston Agricultural Research and Extension Center, Oregon State University, 2121 S 1St, Hermiston, OR, 97838, USA.
| | - Stephen Machado
- Columbia Basin Agricultural Research Center, Oregon State University, 48037 Tubbs Ranch Rd., Adams, OR, 97810, USA
| | - Amin Nouri
- Hermiston Agricultural Research and Extension Center, Oregon State University, 2121 S 1St, Hermiston, OR, 97838, USA
| | - Francisco Calderon
- Columbia Basin Agricultural Research Center, Oregon State University, 48037 Tubbs Ranch Rd., Adams, OR, 97810, USA
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Pesce S, Bérard A, Coutellec MA, Hedde M, Langlais-Hesse A, Larras F, Leenhardt S, Mongruel R, Munaron D, Sabater S, Gallai N. Linking ecotoxicological effects on biodiversity and ecosystem functions to impairment of ecosystem services is a challenge: an illustration with the case of plant protection products. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023:10.1007/s11356-023-29128-x. [PMID: 37548787 DOI: 10.1007/s11356-023-29128-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Accepted: 07/29/2023] [Indexed: 08/08/2023]
Abstract
There is growing interest in using the ecosystem services framework for environmental risk assessments of chemicals, including plant protection products (PPPs). Although this topic is increasingly discussed in the recent scientific literature, there is still a substantial gap between most ecotoxicological studies and a solid evaluation of potential ecotoxicological consequences on ecosystem services. This was recently highlighted by a collective scientific assessment (CSA) performed by 46 scientific experts who analyzed the international science on the impacts of PPPs on biodiversity, ecosystem functions, and ecosystem services. Here, we first point out the main obstacles to better linking knowledge on the ecotoxicological effects of PPPs on biodiversity and ecological processes with ecosystem functions and services. Then, we go on to propose and discuss possible pathways for related improvements. We describe the main processes governing the relationships between biodiversity, ecological processes, and ecosystem functions in response to effects of PPP, and we define categories of ecosystem functions that could be directly linked with the ecological processes used as functional endpoints in investigations on the ecotoxicology of PPPs. We then explore perceptions on the possible links between these categories of ecosystem functions and ecosystem services among a sub-panel of the scientific experts from various fields of environmental science. We find that these direct and indirect linkages still need clarification. This paper, which reflects the difficulties faced by the multidisciplinary group of researchers involved in the CSA, suggests that the current gap between most ecotoxicological studies and a solid potential evaluation of ecotoxicological consequences on ecosystem services could be partially addressed if concepts and definitions related to ecological processes, ecosystem functions, and ecosystem services were more widely accepted and shared within the ecotoxicology community. Narrowing this gap would help harmonize and extend the science that informs decision-making and policy-making, and ultimately help to better address the trade-off between social benefits and environmental losses caused by the use of PPPs.
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Affiliation(s)
| | | | - Marie-Agnès Coutellec
- DECOD (Ecosystem Dynamics and Sustainability), INRAE, Institut Agro-Agrocampus Ouest, IFREMER, Rennes, France
| | - Mickaël Hedde
- Eco&Sols, Univ. Montpellier, INRAE, IRD, CIRAD, Institut Agro Montpellier, Montpellier, France
| | | | - Floriane Larras
- INRAE, DEPE, Paris, France
- KREATiS SAS, 23 rue du Creuzat, ZAC de St-Hubert, 38080, L'Isle-d'Abeau, France
| | | | - Rémi Mongruel
- Ifremer, UMR 6308 Amure, CS10070, 29280, Plouzané, France
| | | | - Sergi Sabater
- Catalan Institute of Water Research (ICRA), Carrer Emili Grahit 101, 17003 Girona, and Institute of Aquatic Ecology, University of Girona-Montilivi Campus, 17071, Girona, Spain
| | - Nicola Gallai
- UMR LEREPS/ENSFEA, 2 route de Narbonne, Castanet-Tolosan Cedex, 31320 Cedex, France
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11
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Leal Filho W, Nagy GJ, Setti AFF, Sharifi A, Donkor FK, Batista K, Djekic I. Handling the impacts of climate change on soil biodiversity. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 869:161671. [PMID: 36657677 DOI: 10.1016/j.scitotenv.2023.161671] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Revised: 01/12/2023] [Accepted: 01/13/2023] [Indexed: 06/17/2023]
Abstract
Land as a whole, and soil, in particular, plays a critical function in the climate system. The various types of land use, especially agriculture and forestry, account for nearly a quarter of the greenhouse gas emissions. On the other hand, the world's soil is under pressure from many factors, including climate change and land use change. Increases in temperature, prolonged drought and floods put pressure on the soil. In order to contribute to a better understanding of these interactions, we conducted a review combining a narrative-focused approach, selecting examples worldwide, and a bibliometric analysis (VosViewer software). This review reports on a study that analyses how climate change and land use change may negatively influence soil biodiversity and related services. It also outlines some of the actions needed to increase the resilience of soil biodiversity in the context of a changing climate. Some key findings are: 1) Well-managed soils are critical for resilient production systems. 2) Integrated agricultural production systems have gained prominence as climate-resilient production systems. 3) Agricultural zoning may be a valuable tool in integrated systems to minimise the effects of climate change. However, it is vital to continuously monitor environmental variations so producers can be more prepared for climate change and extreme events. Finally, adequate water management is essential for soil functioning under climate change aggravating water scarcity. An intersectoral approach between critical sectors facilitates comprehensive water management.
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Affiliation(s)
- Walter Leal Filho
- Department of Natural Sciences, Manchester Metropolitan University, Chester Street, Manchester M1 5GD, UK; European School of Sustainability Science and Research, Hamburg University of Applied Sciences, Germany.
| | - Gustavo J Nagy
- Instituto de Ecología y Ciencias Ambientales (IECA), Universidad de la República (UdelaR), Montevideo 11400, Uruguay.
| | - Andréia Faraoni Freitas Setti
- Department of Biology & CESAM Centre for Environmental and Marine Studies, University of Aveiro, 3810-193 Aveiro, Portugal.
| | - Ayyoob Sharifi
- Graduate School of Humanities and Social Sciences and Network for Education and Research on Peace and Sustainability, Hiroshima University, Higashi, Hiroshima 739-8530, Japan.
| | - Felix Kwabena Donkor
- College of Agriculture & Environmental Sciences (CAES), University of South Africa (UNISA), 28 Pioneer Ave, Florida Park, Roodepoort 1709, South Africa
| | - Karina Batista
- Instituto de Zootecnia, Agência Paulista de Tecnologia dos Agronegócios, Secretaria de Agricultura e Abastecimento do Estado de São Paulo, 56 Heitor Penteado St. Centro, Zip Code: 13.460-000 Nova Odessa, SP, Brazil
| | - Ilija Djekic
- Faculty of Agriculture, University of Belgrade, Nemanjina 6, Zemun, 11080 Belgrade, Serbia.
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12
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Araujo ASF, de Araujo Pereira AP, Melo VMM, de Medeiros EV, Mendes LW. Environmental DNA Sequencing to Monitor Restoration Practices on Soil Bacterial and Archaeal Communities in Soils Under Desertification in the Brazilian Semiarid. MICROBIAL ECOLOGY 2023; 85:1072-1076. [PMID: 35633375 DOI: 10.1007/s00248-022-02048-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Accepted: 05/18/2022] [Indexed: 05/04/2023]
Abstract
Soils from Brazilian semiarid regions are highly vulnerable to desertification due to their geology, climate, human actions, and intensive land use that contribute to desertification. Therefore, areas under desertification have increased in the Brazilian semiarid region and it has negatively changed the soil bacterial and archaeal communities and their functionality. On the other hand, although restoration strategies are expensive and there are few soils restoration programs, some practices have been applied to restore these soils under desertification. For instance, conservationist practices and grazing exclusion have been strategically implemented, and they created a new altered soil condition for soil microbial communities, boosting soil microbial diversity. Here, we discuss the potential of these restoration strategies to recover the richness and diversity of soil bacterial and archaeal communities that were described through environmental DNA (eDNA) sequencing of soil samples. eDNA sequencing results show that areas where restoration strategies have been applied in regions under desertification in the Brazilian semiarid have increased species richness, diversity, and structure of the bacterial and archaeal community. In addition, network connectivity and functionality of the soil microorganisms have been improved over time. Altogether, we show that management strategies for soil restoration have positive effects on soil microbial communities and these effects can be monitored using the eDNA sequencing approach.
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Affiliation(s)
| | | | | | | | - Lucas William Mendes
- Centro de Energia Nuclear Na Agricultura, Universidade de São Paulo, Piracicaba, São Paulo, Brazil
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13
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Mishra A, Singh L, Singh D. Unboxing the black box-one step forward to understand the soil microbiome: A systematic review. MICROBIAL ECOLOGY 2023; 85:669-683. [PMID: 35112151 PMCID: PMC9957845 DOI: 10.1007/s00248-022-01962-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/03/2021] [Accepted: 01/10/2022] [Indexed: 06/14/2023]
Abstract
Soil is one of the most important assets of the planet Earth, responsible for maintaining the biodiversity and managing the ecosystem services for both managed and natural ecosystems. It encompasses large proportion of microscopic biodiversity, including prokaryotes and the microscopic eukaryotes. Soil microbiome is critical in managing the soil functions, but their activities have diminutive recognition in few systems like desert land and forest ecosystems. Soil microbiome is highly dependent on abiotic and biotic factors like pH, carbon content, soil structure, texture, and vegetation, but it can notably vary with ecosystems and the respective inhabitants. Thus, unboxing this black box is essential to comprehend the basic components adding to the soil systems and supported ecosystem services. Recent advancements in the field of molecular microbial ecology have delivered commanding tools to examine this genetic trove of soil biodiversity. Objective of this review is to provide a critical evaluation of the work on the soil microbiome, especially since the advent of the NGS techniques. The review also focuses on advances in our understanding of soil communities, their interactions, and functional capabilities along with understanding their role in maneuvering the biogeochemical cycle while underlining and tapping the unprecedented metagenomics data to infer the ecological attributes of yet undiscovered soil microbiome. This review focuses key research directions that could shape the future of basic and applied research into the soil microbiome. This review has led us to understand that it is difficult to generalize that soil microbiome plays a substantiated role in shaping the soil networks and it is indeed a vital resource for sustaining the ecosystem functioning. Exploring soil microbiome will help in unlocking their roles in various soil network. It could be resourceful in exploring and forecasting its impacts on soil systems and for dealing with alleviating problems like rapid climate change.
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Affiliation(s)
- Apurva Mishra
- Academy of Scientific and Innovative Research [AcSIR], Ghaziabad, 201002, India
- Environmental Biotechnology and Genomics Division, , CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, 440020, Maharashtra, India
| | - Lal Singh
- Environmental Biotechnology and Genomics Division, , CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, 440020, Maharashtra, India
| | - Dharmesh Singh
- Institute for Medical Microbiology, Immunology and Hygiene, Technical University of Munich, Trogerstrasse 30, 81675, Munich, Bavaria, Germany.
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14
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Tedersoo L, Mikryukov V, Zizka A, Bahram M, Hagh‐Doust N, Anslan S, Prylutskyi O, Delgado‐Baquerizo M, Maestre FT, Pärn J, Öpik M, Moora M, Zobel M, Espenberg M, Mander Ü, Khalid AN, Corrales A, Agan A, Vasco‐Palacios A, Saitta A, Rinaldi AC, Verbeken A, Sulistyo BP, Tamgnoue B, Furneaux B, Ritter CD, Nyamukondiwa C, Sharp C, Marín C, Gohar D, Klavina D, Sharmah D, Dai DQ, Nouhra E, Biersma EM, Rähn E, Cameron E, De Crop E, Otsing E, Davydov EA, Albornoz F, Brearley FQ, Buegger F, Zahn G, Bonito G, Hiiesalu I, Barrio IC, Heilmann‐Clausen J, Ankuda J, Kupagme JY, Maciá‐Vicente JG, Fovo JD, Geml J, Alatalo JM, Alvarez‐Manjarrez J, Põldmaa K, Runnel K, Adamson K, Bråthen KA, Pritsch K, Tchan KI, Armolaitis K, Hyde KD, Newsham K, Panksep K, Lateef AA, Tiirmann L, Hansson L, Lamit LJ, Saba M, Tuomi M, Gryzenhout M, Bauters M, Piepenbring M, Wijayawardene N, Yorou NS, Kurina O, Mortimer PE, Meidl P, Kohout P, Nilsson RH, Puusepp R, Drenkhan R, Garibay‐Orijel R, Godoy R, Alkahtani S, Rahimlou S, Dudov SV, Põlme S, Ghosh S, Mundra S, Ahmed T, Netherway T, Henkel TW, Roslin T, Nteziryayo V, Fedosov VE, Onipchenko V, Yasanthika WAE, Lim YW, Soudzilovskaia NA, Antonelli A, Kõljalg U, Abarenkov K. Global patterns in endemicity and vulnerability of soil fungi. GLOBAL CHANGE BIOLOGY 2022; 28:6696-6710. [PMID: 36056462 PMCID: PMC9826061 DOI: 10.1111/gcb.16398] [Citation(s) in RCA: 29] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2022] [Accepted: 08/09/2022] [Indexed: 05/29/2023]
Abstract
Fungi are highly diverse organisms, which provide multiple ecosystem services. However, compared with charismatic animals and plants, the distribution patterns and conservation needs of fungi have been little explored. Here, we examined endemicity patterns, global change vulnerability and conservation priority areas for functional groups of soil fungi based on six global surveys using a high-resolution, long-read metabarcoding approach. We found that the endemicity of all fungi and most functional groups peaks in tropical habitats, including Amazonia, Yucatan, West-Central Africa, Sri Lanka, and New Caledonia, with a negligible island effect compared with plants and animals. We also found that fungi are predominantly vulnerable to drought, heat and land-cover change, particularly in dry tropical regions with high human population density. Fungal conservation areas of highest priority include herbaceous wetlands, tropical forests, and woodlands. We stress that more attention should be focused on the conservation of fungi, especially root symbiotic arbuscular mycorrhizal and ectomycorrhizal fungi in tropical regions as well as unicellular early-diverging groups and macrofungi in general. Given the low overlap between the endemicity of fungi and macroorganisms, but high conservation needs in both groups, detailed analyses on distribution and conservation requirements are warranted for other microorganisms and soil organisms.
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Affiliation(s)
- Leho Tedersoo
- Mycology and Microbiology CenterUniversity of TartuTartuEstonia
| | | | | | - Mohammad Bahram
- Department of EcologySwedish University of Agricultural SciencesUppsalaSweden
| | | | - Sten Anslan
- Institute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | - Oleh Prylutskyi
- Department of Mycology and Plant Resistance, School of BiologyV.N. Karazin Kharkiv National UniversityKharkivUkraine
| | - Manuel Delgado‐Baquerizo
- Laboratorio de Biodiversidad y Funcionamiento Ecosistémico, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, and Unidad Asociada CSIC‐UPO (BioFun)Universidad Pablo de OlavideSevillaSpain
| | - Fernando T. Maestre
- Departamento de Ecología, Instituto Multidisciplinar para el Estudio del Medio ‘Ramón Margalef’Universidad de AlicanteAlicanteSpain
| | - Jaan Pärn
- Institute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | - Maarja Öpik
- Institute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | - Mari Moora
- Institute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | - Martin Zobel
- Institute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | - Mikk Espenberg
- Institute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | - Ülo Mander
- Institute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | | | - Adriana Corrales
- Centro de Investigaciones en Microbiología y Biotecnología‐UR (CIMBIUR)Universidad del RosarioBogotáColombia
| | - Ahto Agan
- Institute of Forestry and EngineeringEstonian University of Life SciencesTartuEstonia
| | - Aída‐M. Vasco‐Palacios
- BioMicro, Escuela de MicrobiologíaUniversidad de Antioquia UdeAMedellinAntioquiaColombia
| | - Alessandro Saitta
- Department of Agricultural, Food and Forest SciencesUniversity of PalermoPalermoItaly
| | - Andrea C. Rinaldi
- Department of Biomedical SciencesUniversity of CagliariCagliariItaly
| | | | - Bobby P. Sulistyo
- Department of BiomedicineIndonesia International Institute for Life SciencesJakartaIndonesia
| | - Boris Tamgnoue
- Department of Crop ScienceUniversity of DschangDschangCameroon
| | - Brendan Furneaux
- Department of Ecology and GeneticsUppsala UniversityUppsalaSweden
| | | | - Casper Nyamukondiwa
- Department of Biological Sciences and BiotechnologyBotswana International University of Science and TechnologyPalapyeBotswana
| | - Cathy Sharp
- Natural History Museum of ZimbabweBulawayoZimbabwe
| | - César Marín
- Centro de Investigación e Innovación para el Cambio Climático (CiiCC)Universidad SantoTomásSantiagoChile
| | - Daniyal Gohar
- Mycology and Microbiology CenterUniversity of TartuTartuEstonia
| | - Darta Klavina
- Latvian State Forest Research Insitute SilavaSalaspilsLatvia
| | - Dipon Sharmah
- Department of Botany, Jawaharlal Nehru Rajkeeya MahavidyalayaPondicherry UniversityPort BlairIndia
| | - Dong Qin Dai
- College of Biological Resource and Food EngineeringQujing Normal UniversityQujingChina
| | - Eduardo Nouhra
- Instituto Multidisciplinario de Biología Vegetal (CONICET)Universidad Nacional de CórdobaCordobaArgentina
| | | | - Elisabeth Rähn
- Institute of Forestry and EngineeringEstonian University of Life SciencesTartuEstonia
| | - Erin K. Cameron
- Department of Environmental ScienceSaint Mary's UniversityHalifaxCanada
| | | | - Eveli Otsing
- Mycology and Microbiology CenterUniversity of TartuTartuEstonia
| | | | | | - Francis Q. Brearley
- Department of Natural SciencesManchester Metropolitan UniversityManchesterUK
| | | | | | - Gregory Bonito
- Plant, Soil and Microbial SciencesMichigan State UniversityEast LansingMichiganUSA
| | - Inga Hiiesalu
- Institute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | - Isabel C. Barrio
- Faculty of Natural and Environmental SciencesAgricultural University of IcelandHvanneyriIceland
| | | | - Jelena Ankuda
- Department of Silviculture and EcologyInstitute of Forestry of Lithuanian Research Centre for Agriculture and Forestry (LAMMC)GirionysLithuania
| | - John Y. Kupagme
- Mycology and Microbiology CenterUniversity of TartuTartuEstonia
| | - Jose G. Maciá‐Vicente
- Plant Ecology and Nature ConservationWageningen University & ResearchWageningenThe Netherlands
| | | | - József Geml
- ELKH‐EKKE Lendület Environmental Microbiome Research GroupEszterházy Károly Catholic UniversityEgerHungary
| | | | | | - Kadri Põldmaa
- Institute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | - Kadri Runnel
- Institute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | - Kalev Adamson
- Institute of Forestry and EngineeringEstonian University of Life SciencesTartuEstonia
| | - Kari Anne Bråthen
- Department of Arctic and Marine BiologyThe Arctic University of NorwayTromsøNorway
| | | | - Kassim I. Tchan
- Research Unit Tropical Mycology and Plants‐Soil Fungi InteractionsUniversity of ParakouParakouBenin
| | - Kęstutis Armolaitis
- Department of Silviculture and EcologyInstitute of Forestry of Lithuanian Research Centre for Agriculture and Forestry (LAMMC)GirionysLithuania
| | - Kevin D. Hyde
- Center of Excellence in Fungal ResearchMae Fah Luang UniversityChiang RaiThailand
| | | | - Kristel Panksep
- Chair of Hydrobiology and FisheryEstonian University of Life SciencesTartuEstonia
| | | | - Liis Tiirmann
- Mycology and Microbiology CenterUniversity of TartuTartuEstonia
| | - Linda Hansson
- Gothenburg Centre for Sustainable DevelopmentGothenburgSweden
| | - Louis J. Lamit
- Department of BiologySyracuse UniversitySyracuseNew YorkUSA
- Department of Environmental and Forest BiologyState University of New York College of Environmental Science and ForestrySyracuseNew YorkUSA
| | - Malka Saba
- Department of Plant SciencesQuaid‐i‐Azam UniversityIslamabadPakistan
| | - Maria Tuomi
- Department of Arctic and Marine BiologyThe Arctic University of NorwayTromsøNorway
| | - Marieka Gryzenhout
- Department of GeneticsUniversity of the Free StateBloemfonteinSouth Africa
| | | | - Meike Piepenbring
- Mycology Working GroupGoethe University Frankfurt am MainFrankfurt am MainGermany
| | - Nalin Wijayawardene
- College of Biological Resource and Food EngineeringQujing Normal UniversityQujingChina
| | - Nourou S. Yorou
- Research Unit Tropical Mycology and Plants‐Soil Fungi InteractionsUniversity of ParakouParakouBenin
| | - Olavi Kurina
- Institute of Agricultural and Environmental SciencesEstonian University of Life SciencesTartuEstonia
| | - Peter E. Mortimer
- Center For Mountain Futures, Kunming Institute of BotanyChinese Academy of SciencesKunmingChina
| | - Peter Meidl
- Institut für BiologieFreie Universität BerlinBerlinGermany
| | - Petr Kohout
- Institute of MicrobiologyCzech Academy of SciencesPragueCzech Republic
| | - Rolf Henrik Nilsson
- Gothenburg Global Biodiversity CentreUniversity of GothenburgGothenburgSweden
| | - Rasmus Puusepp
- Mycology and Microbiology CenterUniversity of TartuTartuEstonia
| | - Rein Drenkhan
- Institute of Forestry and EngineeringEstonian University of Life SciencesTartuEstonia
| | | | - Roberto Godoy
- Instituto Ciencias Ambientales y EvolutivasUniversidad Austral de ChileValdiviaChile
| | - Saad Alkahtani
- College of ScienceKing Saud UniversityRiyadhSaudi Arabia
| | - Saleh Rahimlou
- Mycology and Microbiology CenterUniversity of TartuTartuEstonia
| | - Sergey V. Dudov
- Department of Ecology and Plant GeographyMoscow Lomonosov State UniversityMoscowRussia
| | - Sergei Põlme
- Mycology and Microbiology CenterUniversity of TartuTartuEstonia
| | - Soumya Ghosh
- Department of GeneticsUniversity of the Free StateBloemfonteinSouth Africa
| | - Sunil Mundra
- Department of Biology, College of ScienceUnited Arab Emirates UniversityAbu DhabiUAE
| | - Talaat Ahmed
- Environmental Science CenterQatar UniversityDohaQatar
| | - Tarquin Netherway
- Department of EcologySwedish University of Agricultural SciencesUppsalaSweden
| | - Terry W. Henkel
- Department of Biological SciencesCalifornia State Polytechnic UniversityArcataCaliforniaUSA
| | - Tomas Roslin
- Department of EcologySwedish University of Agricultural SciencesUppsalaSweden
| | - Vincent Nteziryayo
- Department of Food Science and TechnologyUniversity of BurundiBujumburaBurundi
| | - Vladimir E. Fedosov
- Department of Ecology and Plant GeographyMoscow Lomonosov State UniversityMoscowRussia
| | | | | | - Young Woon Lim
- School of Biological Sciences and Institute of MicrobiologySeoul National UniversitySeoulSouth Korea
| | | | | | - Urmas Kõljalg
- Institute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
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15
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Konestabo HS, Birkemoe T, Leinaas HP, van Gestel CAM, Sengupta S, Borgå K. Pesticide effects on the abundance of springtails and mites in field mesocosms at an agricultural site. ECOTOXICOLOGY (LONDON, ENGLAND) 2022; 31:1450-1461. [PMID: 36319919 PMCID: PMC9652236 DOI: 10.1007/s10646-022-02599-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Accepted: 10/13/2022] [Indexed: 06/16/2023]
Abstract
The use of pesticides to protect crops often affects non-target organisms vital to ecosystem functioning. A functional soil mesofauna is important for decomposition and nutrient cycling processes in agricultural soils, which generally have low biodiversity. To assess pesticide effects on natural soil communities we enclosed intact soil cores in situ in an agricultural field in 5 cm wide mesocosms. We used two types of mesh lids on the mesocosms, allowing or preventing migration of mesofauna. The mesocosms were exposed to the insecticide imidacloprid (0, 0.1, 1, and 10 mg/kg dry soil) and left in the field for 20 days. Overall, regardless of lid type, mesocosm enclosure did not affect springtail or mite abundances during the experiment when compared with undisturbed soil. Imidacloprid exposure reduced the abundance of both surface- and soil-living springtails in a concentration-dependent manner, by 65-90% at the two highest concentrations, and 21-23% at 0.1 mg/kg, a concentration found in some agricultural soils after pesticide application. Surface-living springtails were more affected by imidacloprid exposure than soil-living ones. In contrast, neither predatory nor saprotrophic mites showed imidacloprid-dependent changes in abundance, concurring with previous findings indicating that mites are generally less sensitive to neonicotinoids than other soil organisms. The possibility to migrate did not affect the springtail or mite abundance responses to imidacloprid. We show that under realistic exposure concentrations in the field, soil arthropod community composition and abundance can be substantially altered in an organism-dependent manner, thus affecting the soil community diversity.
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Affiliation(s)
- Heidi Sjursen Konestabo
- Department of Biosciences, University of Oslo, Oslo, Norway.
- The Science Library, University of Oslo, Oslo, Norway.
| | - Tone Birkemoe
- Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, Oslo, Norway
| | | | - Cornelis A M van Gestel
- Amsterdam Institute for Life and Environment (A-LIFE), Faculty of Science, Vrije Universiteit, Amsterdam, The Netherlands
| | | | - Katrine Borgå
- Department of Biosciences, University of Oslo, Oslo, Norway
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16
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Choudoir MJ, Eggleston EM. Reciprocal Inclusion of Microbiomes and Environmental Justice Contributes Solutions to Global Environmental Health Challenges. mSystems 2022; 7:e0146221. [PMID: 35642845 PMCID: PMC9239259 DOI: 10.1128/msystems.01462-21] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Generations of colonialism, industrialization, intensive agriculture, and anthropogenic climate change have radically altered global ecosystems and by extension, their environmental microbiomes. The environmental consequences of global change disproportionately burden racialized communities, those with lower socioeconomic status, and other systematically underserved populations. Environmental justice seeks to balance the relationships between environmental burden, beneficial ecosystem functions, and local communities. Given their direct links to human and ecosystem health, microbes are embedded within social and environmental justice. Considering scientific and technological advances is becoming an important step in developing actionable solutions to global equity challenges. Here we identify areas where inclusion of microbial knowledge and research can support planetary health goals. We offer guidelines for strengthening a reciprocal integration of environmental justice into environmental microbiology research. Microbes form intimate relationships with the environment and society, thus microbiologists have numerous and unique opportunities to incorporate equity into their research, teaching, and community engagement.
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Affiliation(s)
- Mallory J. Choudoir
- Department of Microbiology, University of Massachusetts Amherst, Amherst, Massachusetts, USA
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17
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Ecohealth Villages: A Framework for an Ecosystem Approach to Health in Human Settlements. SUSTAINABILITY 2022. [DOI: 10.3390/su14127053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
As life emerged on Earth, it began to affect its environments. It still does. The complex interactions between living things and their environments mediate the character of both. Today, this is apparent in the global impacts humans have made on ecosystems, with resultant reciprocal impacts on human health. This paper is concerned with that reciprocity, which may be considered as a link between ecosystems and human populations. We will distinguish an ecosystem approach to human health—or ecohealth—from One Health and planetary health perspectives. We will also propose a conceptual framework that can be used to distinguish human settlements as Ecohealth Villages. Broadly defined, an Ecohealth Village is a settlement that recognizes the interactions between healthy ecosystems and the health of people who live, work, learn, and play in it. The key principles of an Ecohealth Villages are as follows: community ownership, ecological restoration, sustainability, social and gender equity, integrated perspectives, and traditional practices and knowledge. Together, they support a holistic, ecosystem approach to health in human settlements, as demonstrated in case studies from Mexico and Aotearoa New Zealand.
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Byrne LB. The essence of soil biodiversity. Conserv Lett 2022. [DOI: 10.1111/conl.12900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Affiliation(s)
- Loren B. Byrne
- Department of Biology, Marine Biology and Environmental Science Roger Williams University Bristol Rhode Island
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Pothula SK, Phillips G, Bernard EC. Increasing Levels of Physical Disturbance Affect Soil Nematode Community Composition in a Previously Undisturbed Ecosystem. J Nematol 2022; 54:20220022. [PMID: 35937923 PMCID: PMC9301655 DOI: 10.2478/jofnem-2022-0022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Indexed: 11/20/2022] Open
Abstract
Soil is essential for the sustenance of life. Diverse soil organisms support several biological processes such as organic matter decomposition, mineralization, nutrient cycling, and controlling pests and diseases. Among multicellular soil organisms, nematodes are ubiquitous, functionally diverse, and abundant. Notably, agricultural practices have diverse impacts on plants, soils, and soil organisms. Tillage affects nematodes directly by altering pore size and disrupting the continuity of water films and indirectly by affecting the lower trophic groups such as bacteria and fungi. The primary goal of this study was to examine the effect of increasing levels of physical disturbance on nematode communities in an undisturbed forest ecosystem. The experiment included four treatments: control with no disturbance, surface litter removed with no litter and no vegetation, tilling the soil with a rototiller every 2 mon, and every 2 wk. Tillage significantly reduced the overall abundance and overall richness of nematode communities over time. Among nematode trophic groups, tillage significantly reduced the abundance and richness of bacterial feeders, predators, and omnivores over time. The abundance and richness of c-p 2, c-p 4, and c-p 5 class nematodes were significantly decreased by tillage. Unlike tillage, minimal disturbance such as removal of surface litter resulted in a significant decrease in the abundance of only three genera: Acrobeles, Aporcelaimellus, and Boleodorus. Nonmetric multidimensional scaling analysis revealed that nematodes of higher c-p classes such as Dorylaimida, Aporcelaimellus, Alaimus, Clarkus, and Tripyla were sensitive to physical disturbances. Bacterial feeders belonging to the c-p 2 class such as Tylocephalus, Acrobeles, Ceratoplectus, Plectus, and Pseudacrobeles were significantly reduced by tillage. Moreover, tillage significantly reduced the functional metabolic footprint of nematodes, which indicates decreased metabolic activity, reduced C inflow, and poorly structured soil food webs. Previous studies conducted in agricultural ecosystems determined that Clarkus, Filenchus, and Plectus were tolerant to tillage; however, they were found sensitive to tillage in our study. Overall, our study suggests that increasing levels of physical disturbance are detrimental to nematode community abundance and diversity that could affect soil ecosystem stability and sustainability.
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Affiliation(s)
- Satyendra Kumar Pothula
- Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN 37996-4560Tennessee
| | - Gary Phillips
- Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN 37996-4560Tennessee
| | - Ernest C. Bernard
- Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN 37996-4560Tennessee
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Kouser Y, Shah AA, Rasmann S. The functional role and diversity of soil nematodes are stronger at high elevation in the lesser Himalayan Mountain ranges. Ecol Evol 2021; 11:13793-13804. [PMID: 34707818 PMCID: PMC8525141 DOI: 10.1002/ece3.8061] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Revised: 08/09/2021] [Accepted: 08/11/2021] [Indexed: 11/22/2022] Open
Abstract
Soil nematodes are a foremost component of terrestrial biodiversity; they display a whole gamut of trophic guilds and life strategies, and by their activity, affect major ecosystem process, such as organic matter degradation and carbon cycling. Based on nematodes' functional types, nematode community indices have been developed, and can be used to link variation in nematodes community composition and ecosystem processes. Yet, the use of these indices has been mainly restricted to anthropogenic stresses. In this study, we propose to expand the use of nematodes' derived ecological indices to link soil and climate properties with soil food webs, and ecosystem processes that all vary along steep elevation gradients. For this purpose, we explored how elevation affects the trophic and functional diversity of nematode communities sampled every 300 m, from about 1,000 m to 3,700 m above sea level, across four transects in the lesser Himalayan range of Jammu and Kashmir. We found that (a) the trophic and functional diversity of nematodes increases with elevation; (b) differences in nematodes communities generate habitat-specific functional diversity; (c) the maturity index (ΣMI) increases with elevation, while the enrichment index decreases, indicating less mature and less productive ecosystems, enhanced fungal-based energy flow, and a predominant role of nematodes in generating carbon influxes at high-elevation sites. We thus confirm that the functional contribution of soil nematodes to belowground ecosystem processes, including carbon and energy flow, is stronger at high elevation. Overall, this study highlights the central importance of nematodes in sustaining soil ecosystems and brings insights into their functional role, particularly in alpine and arctic soils.
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Affiliation(s)
- Yasmeen Kouser
- Department of ZoologyNematode Biodiversity and Genomics Research LabBaba Ghulam Shah Badshah UniversityRajouriIndia
| | - Ali Asghar Shah
- Department of ZoologyNematode Biodiversity and Genomics Research LabBaba Ghulam Shah Badshah UniversityRajouriIndia
| | - Sergio Rasmann
- Laboratory of Functional EcologyInstitute of BiologyUniversity of NeuchâtelNeuchâtelSwitzerland
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21
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Heve WK, Adjadeh TA, Billah MK. Overview and future research needs for development of effective biocontrol strategies for management of Bactrocera dorsalis Hendel (Diptera: Tephritidae) in sub-Saharan Africa. PEST MANAGEMENT SCIENCE 2021; 77:4224-4237. [PMID: 34031975 DOI: 10.1002/ps.6485] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 05/16/2021] [Accepted: 05/25/2021] [Indexed: 06/12/2023]
Abstract
Infestation of fruits by native and invasive fruit flies causes significant economic losses. In most cases, incidence of 'regulated' dangerous fruit flies in orchards results in restrictions on export of fruits from such places to international markets. Unfortunately, use of insecticides applied on foliage and fruits does not kill the fruit-to-soil stages of fruit flies. However, diverse biological control agents (BCAs) do so. Thus, prevalence of native and invasive fruit flies in orchards will require that a combination of BCAs is included in integrated pest management (IPM) programmes. In the case of Bactrocera dorsalis Hendel and other economically important fruit flies found in sub-Saharan Africa (SSA), use of classical biocontrol approach involves concomitant releases of two exotic parasitoids (Fopius arisanus Sonan and Diachasmimorpha longicaudata Ashmead). These non-native wasps may have complemented the indigenous parasitoids in combination with application of entomopathogenic fungi (EPFs) and conservation of predatory ants (Oecophylla longinoda Latreille, with O. smaragdina) in fruit fly IPM plans. Consequently, some levels of decline in fruit infestation have been observed. Although interspecific interactions between BCAs against several insect pests have produced varying results, including threatening the survival of other BCAs, the prevalence of B. dorsalis in orchards across SSA requires further research to investigate effects of coalescing biocontrol approaches in IPM strategies. Therefore, future research into combining parasitoids, EPFs and entomopathogenic nematodes, in addition to conservation of predatory ants (O. longinoda, O. smaragdina and others) in IPM plans may improve the effectiveness of currently used strategies for the management of fruit-infesting tephritids. © 2021 Society of Chemical Industry.
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Affiliation(s)
- William K Heve
- Department of Biological, Physical and Mathematical Sciences, School of Natural and Environmental Sciences, University of Environment and Sustainable Development, Somanya, Ghana
| | | | - Maxwell K Billah
- Department of Animal Biology and Conservation Science, University of Ghana, Accra, Ghana
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22
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Ishaq SL, Parada FJ, Wolf PG, Bonilla CY, Carney MA, Benezra A, Wissel E, Friedman M, DeAngelis KM, Robinson JM, Fahimipour AK, Manus MB, Grieneisen L, Dietz LG, Pathak A, Chauhan A, Kuthyar S, Stewart JD, Dasari MR, Nonnamaker E, Choudoir M, Horve PF, Zimmerman NB, Kozik AJ, Darling KW, Romero-Olivares AL, Hariharan J, Farmer N, Maki KA, Collier JL, O’Doherty KC, Letourneau J, Kline J, Moses PL, Morar N. Introducing the Microbes and Social Equity Working Group: Considering the Microbial Components of Social, Environmental, and Health Justice. mSystems 2021; 6:e0047121. [PMID: 34313460 PMCID: PMC8407420 DOI: 10.1128/msystems.00471-21] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Humans are inextricably linked to each other and our natural world, and microorganisms lie at the nexus of those interactions. Microorganisms form genetically flexible, taxonomically diverse, and biochemically rich communities, i.e., microbiomes that are integral to the health and development of macroorganisms, societies, and ecosystems. Yet engagement with beneficial microbiomes is dictated by access to public resources, such as nutritious food, clean water and air, safe shelter, social interactions, and effective medicine. In this way, microbiomes have sociopolitical contexts that must be considered. The Microbes and Social Equity (MSE) Working Group connects microbiology with social equity research, education, policy, and practice to understand the interplay of microorganisms, individuals, societies, and ecosystems. Here, we outline opportunities for integrating microbiology and social equity work through broadening education and training; diversifying research topics, methods, and perspectives; and advocating for evidence-based public policy that supports sustainable, equitable, and microbial wealth for all.
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Affiliation(s)
- Suzanne L. Ishaq
- University of Maine, School of Food and Agriculture, Orono, Maine, USA
| | - Francisco J. Parada
- Centro de Estudios en Neurociencia Humana y Neuropsicología, Facultad de Psicología, Universidad Diego Portales, Santiago, Chile
| | - Patricia G. Wolf
- Institute for Health Research and Policy, University of Illinois at Chicago, Chicago, Illinois, USA
| | - Carla Y. Bonilla
- Gonzaga University, Department of Biology, Spokane, Washington, USA
| | - Megan A. Carney
- University of Arizona, School of Anthropology, Tucson, Arizona, USA
| | - Amber Benezra
- Stevens Institute of Technology, Science and Technology Studies, Hoboken, New Jersey, USA
| | | | - Michael Friedman
- American International College of Arts and Sciences of Antigua, Antigua, Antigua and Barbuda, West Indies
| | - Kristen M. DeAngelis
- Department of Microbiology, University of Massachusetts, Amherst, Massachusetts, USA
| | - Jake M. Robinson
- University of Sheffield, Department of Landscape Architecture, Sheffield, United Kingdom
| | - Ashkaan K. Fahimipour
- Institute of Marine Sciences, University of California, Santa Cruz, Santa Cruz, California, USA
- National Oceanic and Atmospheric Administration, Southwest Fisheries Science Center, Santa Cruz, California, USA
| | - Melissa B. Manus
- Department of Anthropology, Northwestern University, Evanston, Illinois, USA
| | - Laura Grieneisen
- Department of Genetics, Cell, and Development, University of Minnesota, Minneapolis, Minnesota, USA
| | - Leslie G. Dietz
- University of Oregon, Biology and the Built Environment Center, Eugene, Oregon, USA
| | - Ashish Pathak
- School of the Environment, Florida Agricultural and Mechanical University, Tallahassee, Florida, USA
| | - Ashvini Chauhan
- School of the Environment, Florida Agricultural and Mechanical University, Tallahassee, Florida, USA
| | - Sahana Kuthyar
- Division of Biological Sciences, University of California San Diego, La Jolla, California, USA
| | - Justin D. Stewart
- Department of Ecological Science, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
| | - Mauna R. Dasari
- Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana, USA
| | - Emily Nonnamaker
- Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana, USA
| | - Mallory Choudoir
- Department of Microbiology, University of Massachusetts, Amherst, Massachusetts, USA
| | - Patrick F. Horve
- University of Oregon, Biology and the Built Environment Center, Eugene, Oregon, USA
| | - Naupaka B. Zimmerman
- University of San Francisco, Department of Biology, San Francisco, California, USA
| | - Ariangela J. Kozik
- Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan, USA
| | - Katherine Weatherford Darling
- Social Science Program, University of Maine at Augusta, Augusta, Maine, USA
- University of Maine, Graduate School of Biomedical Science & Engineering, Bangor, Maine, USA
| | | | - Janani Hariharan
- Field of Soil and Crop Sciences, School of Integrative Plant Science, Cornell University, Ithaca, New York, USA
| | - Nicole Farmer
- National Institutes of Health, Clinical Center, Bethesda, Maryland, USA
| | - Katherine A. Maki
- National Institutes of Health, Clinical Center, Bethesda, Maryland, USA
| | - Jackie L. Collier
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, New York, USA
| | | | - Jeffrey Letourneau
- Molecular Genetics and Microbiology, Duke University, Durham, North Carolina, USA
| | | | - Peter L. Moses
- Robert Larner College of Medicine, University of Vermont, Burlington, Vermont, USA
- Finch Therapeutics, Somerville, Massachusetts, USA
| | - Nicolae Morar
- Environmental Studies Program, University of Oregon, Eugene, Oregon, USA
- Department of Philosophy, University of Oregon, Eugene, Oregon, USA
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Fortunato G, Vaz-Moreira I, Nunes OC, Manaia CM. Effect of copper and zinc as sulfate or nitrate salts on soil microbiome dynamics and bla VIM-positive Pseudomonas aeruginosa survival. JOURNAL OF HAZARDOUS MATERIALS 2021; 415:125631. [PMID: 33773246 DOI: 10.1016/j.jhazmat.2021.125631] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Revised: 02/10/2021] [Accepted: 03/08/2021] [Indexed: 06/12/2023]
Abstract
The exposure of soil to metals and to antibiotic resistant bacteria may lead to the progressive deterioration of soil quality. The persistence of antibiotic resistant bacteria or antibiotic resistance genes in soil can be influenced by the microbial community or by soil amendments with metal salts. This work assessed the effect of soil amendment with copper and zinc, as sulfate or nitrate salts, on the fate of a carbapenem-resistant (blaVIM+) hospital effluent isolate of Pseudomonas aeruginosa (strain H1FC49) and on the variations of the microbial community composition. Microcosms with soil aged or not with copper and zinc salts (20 mM), and inoculated with P. aeruginosa H1FC49 were monitored at 0, 7, 14 and/or 30 days, for community composition (16S rRNA gene amplicon) and strain H1FC49 persistence. Data on culturable P. aeruginosa, quantitative PCR of the housekeeping gene ecf, and the presumably acquired genes blaVIM+ and integrase (intI1), and community composition were interpreted based on descriptive statistics and multivariate analysis. P. aeruginosa and the presumably acquired genes, were quantifiable in soil for up to one month, in both metal-amended and non-amended soil. Metal amendments were associated with a significant decrease of bacterial community diversity and richness. The persistence of P. aeruginosa and acquired genes in soils, combined with the adverse effect of metals on the bacterial community, highlight the vulnerability of soil to both types of exogenous contamination.
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Affiliation(s)
- Gianuario Fortunato
- Universidade Católica Portuguesa, CBQF - Centro de Biotecnologia e Química Fina - Laboratório Associado, Escola Superior de Biotecnologia, Rua Diogo Botelho 1327, 4169-005 Porto, Portugal
| | - Ivone Vaz-Moreira
- Universidade Católica Portuguesa, CBQF - Centro de Biotecnologia e Química Fina - Laboratório Associado, Escola Superior de Biotecnologia, Rua Diogo Botelho 1327, 4169-005 Porto, Portugal
| | - Olga C Nunes
- LEPABE, Laboratório de Engenharia de Processos, Ambiente, Biotecnologia e Energia, Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - Célia M Manaia
- Universidade Católica Portuguesa, CBQF - Centro de Biotecnologia e Química Fina - Laboratório Associado, Escola Superior de Biotecnologia, Rua Diogo Botelho 1327, 4169-005 Porto, Portugal.
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Gupta R, Anshu, Noureldeen A, Darwish H. Rhizosphere mediated growth enhancement using phosphate solubilizing rhizobacteria and their tri-calcium phosphate solubilization activity under pot culture assays in Rice ( Oryza sativa.). Saudi J Biol Sci 2021; 28:3692-3700. [PMID: 34220220 PMCID: PMC8241618 DOI: 10.1016/j.sjbs.2021.05.052] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Revised: 05/19/2021] [Accepted: 05/20/2021] [Indexed: 12/04/2022] Open
Abstract
Phosphate solubilizing rhizobacteria are considered as an important alternative to increase the availability of accumulated phosphates through solubilization. These increase the growth of plant by enhancing the efficiency of fixing biological nitrogen. This was studied through a pot experiment involving two Phosphate Solubilizing Rhizobacteria (PSRB) isolates, Pseudomonas aeruginosa and Bacillus subtilis along with Tri-calcium phosphate (TCP) on availibity of nutrients, biological composition of soil and yield attributes of rice crop at its growth stages. Experiment was laid in factorial completely randomized design (CRD) comprising of eight treatments replicated thrice with two factors viz. factor 1 with or without TCP (1 g−1soil) and factor 2 with single or combined inoculation of PSRB isolates. Considerable enhancement in available content of potassium (K), phosphorous (P), nitrogen (N) in soil was found with TCP 1 g−1soil (P1) and consortium of Pseudomonas aeruginosa and Bacillus subtilis broth culture at crop growth stages. Highest increase in available N (17.13% and 19.1%), available P (232% and 265%), available K (19.6% and 29.2%) over control were recorded in B3 (consortium of Pseudomonas aeruginosa and Bacillus subtilis broth culture). Similarly, maximum nutrient uptake N (6.4%), P (15.8%) and K (8.9%) were recorded with same treatment. A considerable growth in soil microbial biomass carbon and dehydrogenase activity at crop growth stages was recorded on application of TCP 1 g−1soil (P1) and consortium of PSRB isolates' Pseudomonas aeruginosa and Bacillus subtilis (B3). Highest increase in microbial biomass carbon (16.4% and 16.5%) and dehydrogenase activity 34.7% and 43.8% over control were recorded in B3 (consortium of PSRB isolates Pseudomonas aeruginosa and Bacillus subtilis) and was found best among all treatments in terms of yield (63.2%) and yield attributes; number of panicles−1plant (54.8%), number of grains−1panicle (156%) and average panicle length (63.9%).
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Affiliation(s)
- Renu Gupta
- Division of Soil Science and Agriculture Chemistry, Sher-e-Kashmir University of Agricultural Sciences and Technology, Chatha, Jammu, India
| | - Anshu
- Division of Soil Science and Agriculture Chemistry, Sher-e-Kashmir University of Agricultural Sciences and Technology, Chatha, Jammu, India
| | - Ahmed Noureldeen
- Department of Biology, College of Sciences, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
| | - Hadeer Darwish
- Department of Biotechnology, College of Sciences, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
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Pesce S, Mamy L, Achard AL, Le Gall M, Le Perchec S, Réchauchère O, Tibi A, Leenhardt S, Sanchez W. Collective scientific assessment as a relevant tool to inform public debate and policymaking: an illustration about the effects of plant protection products on biodiversity and ecosystem services. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:38448-38454. [PMID: 34131840 DOI: 10.1007/s11356-021-14863-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2021] [Accepted: 06/08/2021] [Indexed: 06/12/2023]
Abstract
Several sustainable development goals cannot be achieved without implementing a new generation of environmental measures to better preserve or restore biodiversity and ecosystem services. However, understanding and addressing biodiversity loss and ecosystem degradation is a challenging problem that is not solvable without integrating the best and latest science. It is crucial to enhance the legibility of this knowledge for decision-makers and policymakers following good-practice standards of scientific assessment. This is the main objective of collective scientific assessments (CSAs), as carried out by the French National Research Institute for Agriculture, Food and the Environment (INRAE) since the early 2000s following a documented procedure to inform public policy and foster public debate on complex interdisciplinary issues. This article describes the main steps of the CSA procedure designed by INRAE's Directorate for Collective Scientific Assessment, Foresight and Advanced Studies, from formulation of the initial question asked by public or para-public bodies (typically ministry divisions or environmental agencies) to wider dissemination of the results and conclusions. This process description is then illustrated through the example of a CSA recently commissioned by three French Ministries (for Ecology, for Research, and for Agriculture) regarding (i) contamination of terrestrial, freshwater, and marine ecosystems by plant protection products (PPPs); (ii) the resulting effects on biodiversity and ecosystem services; and (iii) possible prevention and mitigation strategies. The capacity of this kind of CSA to inform public debate and policymaking is then exemplified through a description of the main outcomes generated by the latest CSA dealing with the adverse effects of PPPs. We also provide a short overview of some key expectations from the current CSA, with a focus on the recent development of the ecosystem service approach in ecological risk assessments of PPPs in the European Union. This illustration demonstrates that CSAs, which are applicable to a wide variety of complex interdisciplinary questions that are not limited to environmental issues, are a relevant tool to inform public debate and policymaking.
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Affiliation(s)
| | - Laure Mamy
- Université Paris-Saclay, INRAE, AgroParisTech, UMR ECOSYS, 78850, Thiverval-Grignon, France
| | - Anne-Laure Achard
- INRAE, Departement AQUA, Information Scientifique et Technique, 69625, Villeurbanne, France
| | - Morgane Le Gall
- Ifremer, Information Scientifique et Technique, Bibliothèque La Pérouse, 29280, Plouzané, France
| | | | - Olivier Réchauchère
- INRAE, Directorate for Collective Scientific Assessment, Foresight and Advanced Studies, 75338, Paris, France
| | - Anaïs Tibi
- INRAE, Directorate for Collective Scientific Assessment, Foresight and Advanced Studies, 75338, Paris, France
| | - Sophie Leenhardt
- INRAE, Directorate for Collective Scientific Assessment, Foresight and Advanced Studies, 75338, Paris, France
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Productivity of Black Locust (Robinia pseudoacacia L.) Grown on a Varying Habitats in Southeastern Poland. FORESTS 2021. [DOI: 10.3390/f12040470] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
This study investigated growth performances of black locust (Robinia pseudoacacia L.) tree species in various soil and agro-climatic conditions in Poland. Implementing of research was based on monoculture black locust stands in which it was possible to carry out dendrometric tests allowing us to learn about their volume. These stands were located on marginal soils. In the sample plots selected for the study, the parameters of stands (main and secondary) were determined, such as number and social structure of trees, average tree height, average diameter at breast height (DBH), and volume. The volume was determined with division into trunks and branches and wood thickness classes (0.0–1.0 cm, 1.1–5.0 cm, 5.1–10.0 cm and then every 5 cm). During the research, it was found that sunlight and moisture conditions mainly affect the volume. It has been noticed that the content of nutrients in the soil plays a minor role because black locust grows very well in poorly fertile soils, often subject to erosion processes. Black locust grows well on damp, shaded slopes with northern exposures. In such areas, the stand volume was the highest (353.8 m3 ha−1), exceeding the average volume of the remaining 35-year-old stands on sandy soils by 60%. Along with the increase in the age of stands, the share of trunk wood increased with the wood of branches. The share of wood up to 5.0 cm was small in older stands, at most a dozen or so percent. However, in young stands (4- and 8-year-old), the share of the thickness class up to 5 cm was even 65% of the stand volume. In 35-year-old stands, wood fractions of 15.1–20.0 cm were dominant. In the oldest, 64-year-old stand, over 30 cm thick wood constituted 44% of the stand volume. However, statistical analysis showed, with p = 0.1644, no differences existed between the thickness of the individual thickness classes.
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Zytynska SE. Embracing the complexity of plant-microbe-insect interactions under a changing climate for sustainable agriculture. CURRENT OPINION IN INSECT SCIENCE 2021; 44:89-94. [PMID: 33887532 DOI: 10.1016/j.cois.2021.04.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Revised: 04/07/2021] [Accepted: 04/08/2021] [Indexed: 06/12/2023]
Abstract
Using beneficial soil bacteria to promote plant growth and reduce pests is a promising direction for sustainable agriculture. However, we need to understand the ecological basis of these interactions in order to identify those with the greatest potential to have an impact in the field. To do this, we need to embrace the complexity of multifactorial experiments to observe the strength of benefits across variable environments. I briefly review the recent literature on plant-microbe-insect interactions across changing environments, focusing on those using multiple factors. I finish by exploring ecological research approaches and multifactorial experimental designs that can be used to simplify the study of plant-microbe-insect interactions.
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Affiliation(s)
- Sharon E Zytynska
- Department of Evolution, Ecology and Behaviour, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.
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Abstract
Soil ecosystem services (ES) (e.g., provisioning, regulation/maintenance, and cultural) and ecosystem disservices (ED) are dependent on soil diversity/pedodiversity (variability of soils), which needs to be accounted for in the economic analysis and business decision-making. The concept of pedodiversity (biotic + abiotic) is highly complex and can be broadly interpreted because it is formed from the interaction of atmospheric diversity (abiotic + biotic), biodiversity (biotic), hydrodiversity (abiotic + biotic), and lithodiversity (abiotic) within ecosphere and anthroposphere. Pedodiversity is influenced by intrinsic (within the soil) and extrinsic (outside soil) factors, which are also relevant to ES/ED. Pedodiversity concepts and measures may need to be adapted to the ES framework and business applications. Currently, there are four main approaches to analyze pedodiversity: taxonomic (diversity of soil classes), genetic (diversity of genetic horizons), parametric (diversity of soil properties), and functional (soil behavior under different uses). The objective of this article is to illustrate the application of pedodiversity concepts and measures to value ES/ED with examples based on the contiguous United States (U.S.), its administrative units, and the systems of soil classification (e.g., U.S. Department of Agriculture (USDA) Soil Taxonomy, Soil Survey Geographic (SSURGO) Database). This study is based on a combination of original research and literature review examples. Taxonomic pedodiversity in the contiguous U.S. exhibits high soil diversity, with 11 soil orders, 65 suborders, 317 great groups, 2026 subgroups, and 19,602 series. The ranking of “soil order abundance” (area of each soil order within the U.S.) expressed as the proportion of the total area is: (1) Mollisols (27%), (2) Alfisols (17%), (3) Entisols (14%), (4) Inceptisols and Aridisols (11% each), (5) Spodosols (3%), (6) Vertisols (2%), and (7) Histosols and Andisols (1% each). Taxonomic, genetic, parametric, and functional pedodiversity are an essential context for analyzing, interpreting, and reporting ES/ED within the ES framework. Although each approach can be used separately, three of these approaches (genetic, parametric, and functional) fall within the “umbrella” of taxonomic pedodiversity, which separates soils based on properties important to potential use. Extrinsic factors play a major role in pedodiversity and should be accounted for in ES/ED valuation based on various databases (e.g., National Atmospheric Deposition Program (NADP) databases). Pedodiversity is crucial in identifying soil capacity (pedocapacity) and “hotspots” of ES/ED as part of business decision making to provide more sustainable use of soil resources. Pedodiversity is not a static construct but is highly dynamic, and various human activities (e.g., agriculture, urbanization) can lead to soil degradation and even soil extinction.
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Eisenhauer N, Buscot F, Heintz-Buschart A, Jurburg SD, Küsel K, Sikorski J, Vogel HJ, Guerra CA. The multidimensionality of soil macroecology. GLOBAL ECOLOGY AND BIOGEOGRAPHY : A JOURNAL OF MACROECOLOGY 2021; 30:4-10. [PMID: 33692654 PMCID: PMC7116881 DOI: 10.1111/geb.13211] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
The recent past has seen a tremendous surge in soil macroecological studies and new insights into the global drivers of one-quarter of the biodiversity of the Earth. Building on these important developments, a recent paper in Global Ecology and Biogeography outlined promising methods and approaches to advance soil macroecology. Among other recommendations, White and colleagues introduced the concept of a spatial three-dimensionality in soil macroecology by considering the different spheres of influence and scales, as soil organism size ranges vary from bacteria to macro- and megafauna. Here, we extend this concept by discussing three additional dimensions (biological, physical, and societal) that are crucial to steer soil macroecology from pattern description towards better mechanistic understanding. In our view, these are the requirements to establish it as a predictive science that can inform policy about relevant nature and management conservation actions. We highlight the need to explore temporal dynamics of soil biodiversity and functions across multiple temporal scales, integrating different facets of biodiversity (i.e., variability in body size, life-history traits, species identities, and groups of taxa) and their relationships to multiple ecosystem functions, in addition to the feedback effects between humans and soil biodiversity. We also argue that future research needs to consider effective soil conservation policy and management in combination with higher awareness of the contributions of soil-based nature's contributions to people. To verify causal relationships, soil macroecology should be paired with local and globally distributed experiments. The present paper expands the multidimensional perspective on soil macroecology to guide future research contents and funding. We recommend considering these multiple dimensions in projected global soil biodiversity monitoring initiatives.
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Affiliation(s)
- Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biology, Leipzig University, Leipzig, Germany
| | - François Buscot
- Institute of Biology, Leipzig University, Leipzig, Germany
- Department of Soil Ecology, Helmholtz Centre for Environmental Research – UFZ, Halle, Germany
| | - Anna Heintz-Buschart
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Department of Soil Ecology, Helmholtz Centre for Environmental Research – UFZ, Halle, Germany
| | - Stephanie D. Jurburg
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Kirsten Küsel
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
| | - Johannes Sikorski
- Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen, Braunschweig, Germany
| | - Hans-Jörg Vogel
- Department of Soil System Science, Helmholtz Centre for Environmental Research – UFZ, Halle, Germany
| | - Carlos A. Guerra
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biology, Martin Luther University Halle Wittenberg, Halle (Saale), Germany
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Abstract
Soil microbes are key to nutrient cycling and soil formation, yet the impact of soil properties on microbe biomass remains unclear. Using 240 soil cores of 0–15 cm depth, taken at random points across six cattle-grazed pastures on an undulating landscape, we evaluated the biomass of microbes in soil as affected by naturally occurring variation in soil organic carbon (SOC), clay content, and local topography. The study pastures varied in historic land-use for crops or forage seeding. SOC was found to be greater in topographically low areas. In contrast, clay content was not related to topography, and clay deposition possibly varies with glaciation legacy. Microbial biomass carbon (MBC) was correlated positively with SOC, increasing from 700 mg kg−1 MBC at 25 g kg−1 SOC to 2240 mg kg−1 MBC at 90 g kg−1 SOC. Most likely, SOC promotes MBC through the release of water-soluble organic carbon. However, the response of MBC to clay content was negative, decreasing from 1340 mg kg−1 MBC at 5% clay to 880 mg kg−1 MBC at 30% clay. Small voids in association with clay particles likely restrict the access of microbes to SOC. The relationship between SOC and MBC illustrates the important role of SOC for soil function, in terms of nutrient availability and development of soil structure via the contribution of microbes. Lastly, there was considerable spatial variability in MBC across the 65 ha site, highlighting the importance of land-use histories and gradients in environmental variables, to determine the biomass of microbes in soil.
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