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Gao H, Wu F. Physiological and transcriptomic analysis of tomato in response to sub-optimal temperature stress. PLANT SIGNALING & BEHAVIOR 2024; 19:2332018. [PMID: 38511566 PMCID: PMC10962623 DOI: 10.1080/15592324.2024.2332018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Accepted: 02/06/2024] [Indexed: 03/22/2024]
Abstract
Tomato (Solanum lycopersicum L.) is one of the most important economic crops in China. However, its quality and yield are susceptible to the adverse effects of low temperatures. In our study, two tomato cultivars, showing different tolerance to low temperatures, namely the cold-sensitive tomato cultivar (S708) and cold-tolerant tomato cultivar (T722), were grown at optimal (25/18°C) and sub-optimal (15/10°C) temperature conditions for 5 days. Our study aimed to explore the effect of sub-optimal temperature on fresh weight, chlorophyll content and chlorophyll fluorescence, soluble sugars and proline content of two tomato cultivars. Moreover, we employed RNA-Seq to analyze the transcriptomic response of tomato roots to sub-optimal temperature. The results revealed that S708 showed a more significant reduction in fresh weight, chlorophyll content, photochemical efficiency of PSII (YII), maximum quantum yield of PSII (Fv/Fm), photochemical quenching (qP) and electron transport rate (ETR) compared to T722 under the sub-optimal temperature condition. Notably, T722 maintained higher level of soluble sugars and proline in comparison to S708 uner sub-optimal temperature. RNA-seq data showed that up-regulated DEGs in both tomato cultivars were involved in "plant-pathogen interaction", "MAPK signaling pathway", "plant hormone signal transduction", and "phosphatidylinositol signaling system". Furthermore, "Amino sugar and nucleotide sugar metabolism" pathway was enriched only in T722. Moreover, under sub-optimal temperature, transcription factor genes and osmoregulation genes showed varying degrees of response in both tomato cultivars. Conclusion: In summary, our results offer detailed insights into the response characteristics of tomato to sub-optimal temperature, providing valuable references for the practical management of tomato crops under sub-optimal temperature condition.
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Affiliation(s)
- Huan Gao
- College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin, China
| | - Fengzhi Wu
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, Northeast Agricultural University, Harbin, China
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Wang Y, Zhang M, Wu C, Chen C, Meng L, Zhang G, Zhuang K, Shi Q. SlWRKY51 regulates proline content to enhance chilling tolerance in tomato. PLANT, CELL & ENVIRONMENT 2024; 47:5104-5114. [PMID: 39148214 DOI: 10.1111/pce.15081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 07/09/2024] [Accepted: 07/30/2024] [Indexed: 08/17/2024]
Abstract
Chilling stress is a major environmental factor that significantly reduces crop production. To adapt to chilling stress, plants activate a series of cellular responses and accumulate an array of metabolites, particularly proline. Here, we report that the transcription factor SlWRKY51 increases proline contents in tomato (Solanum lycopersicum) under chilling stress. SlWRKY51 expression is induced under chilling stress. Knockdown or knockout of SlWRKY51 led to chilling-sensitive phenotypes, with lower photosynthetic capacity and more reactive oxygen species (ROS) accumulation than the wild type (WT). The proline contents were significantly reduced in SlWRKY51 knockdown and knockout lines under chilling stress, perhaps explaining the phenotypes of these lines. D-1-pyrroline-5-carboxylate synthetase (P5CS), which catalyses the rate-limiting step of proline biosynthesis, is encoded by two closely related P5CS genes (P5CS1 and P5CS2). We demonstrate that SlWRKY51 directly activates the expression of P5CS1 under chilling stress. In addition, the VQ (a class of plant-specific proteins containing the conserved motif FxxhVQxhTG) family member SlVQ10 physically interacts with SlWRKY51 to enhance its activation of P5CS1. Our study reveals that the chilling-induced transcription factor SlWRKY51 enhances chilling tolerance in tomato by promoting proline accumulation.
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Affiliation(s)
- Yixuan Wang
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, China
- College of Landscape Architecture, Beijing Forestry University, Beijing, China
| | - Meihui Zhang
- College of Life Sciences, Shandong Agricultural University, Tai'an, China
| | - Chuanzhao Wu
- College of Life Sciences, Shandong Agricultural University, Tai'an, China
| | - Chong Chen
- College of Life Sciences, Shandong Agricultural University, Tai'an, China
- College of Agriculture and Bioengineering, Heze University, He'ze, China
| | - Lun Meng
- Shandong Shike Modern Agriculture Investment Co. Ltd, He'ze, China
| | - Guangqiang Zhang
- College of Agriculture and Bioengineering, Heze University, He'ze, China
| | - Kunyang Zhuang
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, China
- College of Life Sciences, Shandong Agricultural University, Tai'an, China
| | - Qinghua Shi
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, China
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Vuillefroy de Silly R, Pericou L, Seijo B, Crespo I, Irving M. Acidity suppresses CD8 + T-cell function by perturbing IL-2, mTORC1, and c-Myc signaling. EMBO J 2024; 43:4922-4953. [PMID: 39284912 PMCID: PMC11535206 DOI: 10.1038/s44318-024-00235-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 08/13/2024] [Accepted: 08/20/2024] [Indexed: 09/19/2024] Open
Abstract
CD8 + T cells have critical roles in tumor control, but a range of factors in their microenvironment such as low pH can suppress their function. Here, we demonstrate that acidity restricts T-cell expansion mainly through impairing IL-2 responsiveness, lowers cytokine secretion upon re-activation, and reduces the cytolytic capacity of CD8 + T cells expressing low-affinity TCR. We further find decreased mTORC1 signaling activity and c-Myc levels at low pH. Mechanistically, nuclear/cytoplasmic acidification is linked to mTORC1 suppression in a Rheb-, Akt/TSC2/PRAS40-, GATOR1- and Lkb1/AMPK-independent manner, while c-Myc levels drop due to both decreased transcription and higher levels of proteasome-mediated degradation. In addition, lower intracellular levels of glutamine, glutamate, and aspartate, as well as elevated proline levels are observed with no apparent impact on mTORC1 signaling or c-Myc levels. Overall, we suggest that, due to the broad impact of acidity on CD8 + T cells, multiple interventions will be required to restore T-cell function unless intracellular pH is effectively controlled.
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Affiliation(s)
- Romain Vuillefroy de Silly
- Ludwig Institute for Cancer Research, University of Lausanne and Department of Oncology, Lausanne University Hospital (CHUV), Lausanne, Switzerland.
| | - Laetitia Pericou
- Ludwig Institute for Cancer Research, University of Lausanne and Department of Oncology, Lausanne University Hospital (CHUV), Lausanne, Switzerland
| | - Bili Seijo
- Ludwig Institute for Cancer Research, University of Lausanne and Department of Oncology, Lausanne University Hospital (CHUV), Lausanne, Switzerland
| | - Isaac Crespo
- Ludwig Institute for Cancer Research, University of Lausanne and Department of Oncology, Lausanne University Hospital (CHUV), Lausanne, Switzerland
| | - Melita Irving
- Ludwig Institute for Cancer Research, University of Lausanne and Department of Oncology, Lausanne University Hospital (CHUV), Lausanne, Switzerland.
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Appunu C, Surya Krishna S, Harish Chandar SR, Valarmathi R, Suresha GS, Sreenivasa V, Malarvizhi A, Manickavasagam M, Arun M, Arun Kumar R, Gomathi R, Hemaprabha G. Overexpression of EaALDH7, an aldehyde dehydrogenase gene from Erianthus arundinaceus enhances salinity tolerance in transgenic sugarcane (Saccharum spp. Hybrid). PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2024; 348:112206. [PMID: 39096975 DOI: 10.1016/j.plantsci.2024.112206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Revised: 07/25/2024] [Accepted: 07/26/2024] [Indexed: 08/05/2024]
Abstract
Aldehyde Dehydrogenases (ALDH), a group of enzymes, are associated with the detoxification of aldehydes, produced in plants during abiotic stress conditions. Salinity remains a pivotal abiotic challenge that poses a significant threat to cultivation and yield of sugarcane. In this study, an Aldehyde dehydrogenase gene (EaALDH7) from Erianthus arundinaceus was overexpressed in the commercial sugarcane hybrid cultivar Co 86032. The transgenic lines were evaluated at different NaCl concentrations ranging from 0 mM to 200 mM for various morpho-physiological and biochemical parameters. The control plants, subjected to salinity stress condition, exhibited morphological changes in protoxylem, metaxylem, pericycle and pith whereas the transgenic events were on par with plants under regular irrigation. The overexpressing (OE) lines showed less cell membrane injury and improved photosynthetic rate, transpiration rate, and stomatal conductance than the untransformed control plants under stress conditions. Elevated proline content, higher activity of enzymatic antioxidants such as sodium dismutase (SOD), catalase (CAT), glutathione reductase (GR) and ascorbate peroxidase (APX) and low level of malondialdehyde MDA and hydrogen peroxide (H2O2) in the transgenic lines. The analysis of EaALDH7 expression revealed a significant upregulation in the transgenic lines compared to that of the untransformed control during salt stress conditions. The current study highlights the potentials of EaALDH7 gene in producing salinity-tolerant sugarcane cultivars.
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Affiliation(s)
- Chinnaswamy Appunu
- Division of Crop Improvement, ICAR-Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India.
| | - Sakthivel Surya Krishna
- Division of Crop Improvement, ICAR-Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - S R Harish Chandar
- Division of Crop Improvement, ICAR-Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Ramanathan Valarmathi
- Division of Crop Improvement, ICAR-Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | | | - Venkatarayappa Sreenivasa
- Division of Crop Improvement, ICAR-Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Arthanari Malarvizhi
- Division of Crop Improvement, ICAR-Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | | | - Muthukrishnan Arun
- Department of Biotechnology, Bharathiar University, Coimbatore, Tamil Nadu 641046, India
| | - Raja Arun Kumar
- Division of Crop Production, ICAR-Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Raju Gomathi
- Division of Crop Production, ICAR-Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
| | - Govindakurup Hemaprabha
- Division of Crop Improvement, ICAR-Sugarcane Breeding Institute, Coimbatore, Tamil Nadu 641007, India
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Gula E, Dziurka M, Hordyńska N, Libik-Konieczny M. Regulatory effect of pipecolic acid (Pip) on the antioxidant system activity of Mesembryanthemum crystallinum plants exposed to bacterial treatment. PHYSIOLOGIA PLANTARUM 2024; 176:e14583. [PMID: 39469748 DOI: 10.1111/ppl.14583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2024] [Revised: 09/14/2024] [Accepted: 10/04/2024] [Indexed: 10/30/2024]
Abstract
The presented study aims to elucidate the regulatory role of Pipecolic acid (Pip) in modulating the antioxidant system activity of Mesembryanthemum crystallinum plants exposed to Pseudomonas syringae infestation. M. crystallinum, known for its semi-halophytic nature, can transition its metabolism from C3 to CAM under salt stress conditions. The research encompasses the antioxidant system of the plants, covering both enzymatic and low molecular weight components. The findings indicate that Pip supplementation confers a beneficial effect on certain elements of the antioxidant system when the plants are subjected to stress induced by bacteria. Notably, during critical periods, particularly in the initial days post-bacterial treatment, M. crystallinum plants supplemented with Pip and exhibiting C3 metabolism display heightened total antioxidant capacity. This enhancement includes increased superoxide dismutase activity and elevated levels of glutathione and proline. However, in plants with salinity-induced CAM, where these parameters are naturally higher, the supplementation of Pip does not yield significant effects. These results validate the hypothesis that the regulatory influence of Pip on defence mechanisms against biotic stress is contingent upon the metabolic state of the plant. Furthermore, this regulatory effect is more pronounced in C3 plants of M. crystallinum than those undergoing CAM metabolism induced by salinity stress.
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Affiliation(s)
- Emilia Gula
- Polish Academy of Sciences, The Franciszek Górski Institute of Plant Physiology, Kraków, Poland
| | - Michał Dziurka
- Polish Academy of Sciences, The Franciszek Górski Institute of Plant Physiology, Kraków, Poland
| | - Natalia Hordyńska
- Polish Academy of Sciences, The Franciszek Górski Institute of Plant Physiology, Kraków, Poland
| | - Marta Libik-Konieczny
- Polish Academy of Sciences, The Franciszek Górski Institute of Plant Physiology, Kraków, Poland
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6
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Serafim C, Ramos MA, Yilmaz T, Sousa NR, Yu K, Van Geel M, Ceulemans T, Saudreau M, Somers B, Améglio T, Honnay O, Castro PML. Substrate pH mediates growth promotion and resilience to water stress of Tilia tomentosa seedlings after Ectomycorrhizal inoculation. BMC PLANT BIOLOGY 2024; 24:1001. [PMID: 39448897 PMCID: PMC11515430 DOI: 10.1186/s12870-024-05614-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Accepted: 09/23/2024] [Indexed: 10/26/2024]
Abstract
Colonization by Ectomycorrhizal (EcM) fungi is key for the health and performance of plants under different stress scenarios, such as those faced by trees in urban environments. Because urban environments can be lacking EcM fungi, we here assessed the benefits of inoculating Tilia tomentosa seedlings in a pre-transplantation nursery context with the EcM fungi Lactarius deliciosus and Paxillus involutus, using substrates of different pH and facing water-stress. P. involutus had a more evident positive effect in T. tomentosa seedlings and had a good performance in both acidic and alkaline substrate. In acidic substrate the fungus increased the plant height by 0.91-fold, increased the mycorrhization rate by 3.23-fold, expansion rate by 5.03-fold and formation of secondary roots by 0.46-fold, compared to the non-inoculated control. This species also improved the phosphorus content of leaves, which revealed a promotion of nutrient uptake. In alkaline substrate P. involutus increased root dry weight by 3.92-fold and the mycorrhization parameters. In contrast, L. deliciosus only had a positive effect in the improvement of mycorrhization and expansion rates and phosphorus content in the root, effects visible only in alkaline substrate. When exposed to water-stress the increase of proline content was visible in acidic substrate for both fungi, L. deliciosus and P. involutus, and in alkaline substrate for the fungus P. involutus, a response indicative of the enhancement of defenses in stressing scenarios such as water scarcity. We conclude that fungal inoculation improves the vigour and resilience of Tilia seedlings and that it is of utmost importance to select a suitable EcM fungus and to consider the soil pH of the transplanting site. The inoculation approach can be a valuable tool to produce robust seedlings which may have a better performance when transplanted to the challenging urban environment.
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Grants
- BR/175/A1/URBANMYCOSERVE 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
- BR/175/A1/URBANMYCOSERVE 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
- BR/175/A1/URBANMYCOSERVE 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
- BR/175/A1/URBANMYCOSERVE 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
- BR/175/A1/URBANMYCOSERVE 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
- BR/175/A1/URBANMYCOSERVE 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
- BR/175/A1/URBANMYCOSERVE 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
- BR/175/A1/URBANMYCOSERVE 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
- BR/175/A1/URBANMYCOSERVE 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
- BR/175/A1/URBANMYCOSERVE 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
- BR/175/A1/URBANMYCOSERVE 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
- BR/175/A1/URBANMYCOSERVE 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
- 2015–2016 BiodivERsA COFUND call for research proposals, with the national funders: Belgian Science Policy (BelSPo), Research Foundation Flanders (FWO), Agence Nationale de la Recherche (ANR) and Fundação para a Ciência e a Tecnologia (FCT)
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Affiliation(s)
- Cindy Serafim
- Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Diogo Botelho, 1327, Porto, 4169-005, Portugal
| | - Miguel A Ramos
- Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Diogo Botelho, 1327, Porto, 4169-005, Portugal
| | - Tugce Yilmaz
- Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Diogo Botelho, 1327, Porto, 4169-005, Portugal
| | - Nadine R Sousa
- Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Diogo Botelho, 1327, Porto, 4169-005, Portugal
| | - Kang Yu
- Precision Agriculture Lab, School of Life Sciences, Technical University of Munich, Dürnast 9, 85354, Freising, Germany
| | - Maarten Van Geel
- Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, Heverlee, 3001, Belgium
| | - Tobias Ceulemans
- Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, Heverlee, 3001, Belgium
| | - Marc Saudreau
- Université Clermont Auvergne, INRAE, UMR PIAF, Chemin de Beaulieu 5, Clermont-Ferrand, 63000, France
| | - Ben Somers
- Division of Forest, Nature & Landscape, Department of Earth & Environmental Sciences, KU Leuven, Celestijnenlaan 200E, Heverlee, 3001, Belgium
| | - Thierry Améglio
- Université Clermont Auvergne, INRAE, UMR PIAF, Chemin de Beaulieu 5, Clermont-Ferrand, 63000, France
| | - Olivier Honnay
- Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, Heverlee, 3001, Belgium
| | - Paula M L Castro
- Escola Superior de Biotecnologia, Catholic University of Portugal, Rua Diogo Botelho, 1327, Porto, 4169-005, Portugal.
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Haghmadad Milani M, Mohammadi A, Panahirad S, Farhadi H, Labib P, Kulak M, Gohari G, Fotopoulos V, Vita F. Cerium Oxide Nanoparticles (CeO 2 NPs) Enhance Salt Tolerance in Spearmint ( Mentha spicata L.) by Boosting the Antioxidant System and Increasing Essential Oil Composition. PLANTS (BASEL, SWITZERLAND) 2024; 13:2934. [PMID: 39458881 PMCID: PMC11510870 DOI: 10.3390/plants13202934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Revised: 10/17/2024] [Accepted: 10/17/2024] [Indexed: 10/28/2024]
Abstract
Salinity represents a considerable environmental risk, exerting deleterious effects on horticultural crops. Nanotechnology has recently emerged as a promising avenue for enhancing plant tolerance to abiotic stress. Among nanoparticles, cerium oxide nanoparticles (CeO2 NPs) have been demonstrated to mitigate certain stress effects, including salinity. In the present study, the impact of CeO2 NPs (0, 25, and 100 mg L-1) on various morphological traits, photosynthetic pigments, biochemical parameters, and the essential oil profile of spearmint plants under moderate (50 mM NaCl) and severe (100 mM NaCl) salinity stress conditions was examined. As expected, salinity reduced morphological parameters, including plant height, number of leaves, fresh and dry weight of leaves and shoots, as well as photosynthetic pigments, in comparison to control. Conversely, it led to an increase in the content of proline, total phenols, malondialdehyde (MDA), hydrogen peroxide (H2O2), and antioxidant enzyme activities. In terms of CeO2 NP applications, they improved the salinity tolerance of spearmint plants by increasing chlorophyll and carotenoid content, enhancing antioxidant enzyme activities, and lowering MDA and H2O2 levels. However, CeO2 NPs at 100 mg L-1 had adverse effects on certain physiological parameters, highlighting the need for careful consideration of the applied concentration of CeO2 NPs. Considering the response of essential oil compounds, combination of salinity stress and CeO2 treatments led to an increase in the concentrations of L-menthone, pulegone, and 1,8-cineole, which are the predominant compounds in spearmint essential oil. In summary, foliar application of CeO2 NPs strengthened the resilience of spearmint plants against salinity stress, offering new insights into the potential use of CeO2 NP treatments to enhance crop stress tolerance.
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Affiliation(s)
- Maryam Haghmadad Milani
- Department of Biology, Faculty of Basic Sciences, University of Maragheh, Maragheh 551877684, Iran;
| | - Asghar Mohammadi
- Department of Horticultural Sciences, Faculty of Agriculture, University of Tabriz, Tabriz 5166616471, Iran; (A.M.); (S.P.)
| | - Sima Panahirad
- Department of Horticultural Sciences, Faculty of Agriculture, University of Tabriz, Tabriz 5166616471, Iran; (A.M.); (S.P.)
| | - Habib Farhadi
- Department of Horticultural Sciences, Faculty of Agriculture, University of Maragheh, Maragheh 551877684, Iran;
| | - Parisa Labib
- Institute of Inorganic Chemistry, Slovak Academy of Sciences, 84536 Bratislava, Slovakia;
| | - Muhittin Kulak
- Department of Herbal and Animal Production, Vocational School of Technical Sciences, Igdir University, Igdir 76000, Türkiye;
| | - Gholamreza Gohari
- Department of Horticultural Sciences, Faculty of Agriculture, University of Maragheh, Maragheh 551877684, Iran;
- Department of Agricultural Sciences, Biotechnology and Food Science, Cyprus University of Technology, Limassol 3036, Cyprus
| | - Vasileios Fotopoulos
- Department of Agricultural Sciences, Biotechnology and Food Science, Cyprus University of Technology, Limassol 3036, Cyprus
| | - Federico Vita
- Department of Biology, University of Bari Aldo Moro, 70121 Bari, Italy;
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8
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Ali MH, Khan MI, Amjad F, Khan N, Seleiman MF. Improved chickpea growth, physiology, nutrient assimilation and rhizoremediation of hydrocarbons by bacterial consortia. BMC PLANT BIOLOGY 2024; 24:984. [PMID: 39425086 PMCID: PMC11490054 DOI: 10.1186/s12870-024-05709-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2024] [Accepted: 10/15/2024] [Indexed: 10/21/2024]
Abstract
BACKGROUND Soil pollution by petroleum hydrocarbons (PHCs) reduces yield by changing the physico-chemical properties of soil and plants due to PHCs' biotoxicity and persistence. Thus, removing PHCs from the soil is crucial for ecological sustainability. Microbes-assisted phytoremediation is an economical and eco-friendly solution. The current work aimed to develop and use bacterial consortia (BC) for PHCs degradation and plant growth enhancement in hydrocarbon-contaminated soil. Initially, the enriched microbial cultures (that were prepared from PHCs-contaminated soils from five distinct regions) were obtained via screening through microcosm experiments. Afterward, two best microbial cultures were tested for PHCs degradation under various temperature and pH ranges. After culture optimization, isolation and characterization of bacterial strains were done to construct two BC. These constructed BC were tested in a pot experiment for hydrocarbons degradation and chickpea growth in PHCs contaminated soil. RESULTS Findings revealed that PHCs exerted significant phytotoxic effects on chickpea growth and physiology when cultivated in PHCs contaminated soil, reducing agronomic and physiological traits by 13-29% and 12-43%, respectively. However, in the presence of BC, the phytotoxic impacts of PHCs on chickpea plants were reduced, resulting in up to 24 - 35% improvement in agronomic and physiological characteristics as compared to un-inoculated contaminated controls. Furthermore, the bacterial consortia boosted chickpea's nutritional absorption and antioxidant mechanism. Most importantly, chickpea plants phytoremediated 52% of the initial PHCs concentration; however, adding BC1 and BC2 with chickpea plants further increased this removal and remediated 74% and 80% of the initial PHCs concentration, respectively. CONCLUSION In general, BC2 outperformed BC1 (with few exceptions) in promoting plant growth and PHCs elimination. Therefore, using multi-trait BC for PHCs degradation and plant growth improvement under PHCs stress may be an efficient and environmentally friendly strategy to deal with PHCs pollution and toxicity.
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Affiliation(s)
- Muhammad Hayder Ali
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, 38000, Pakistan
| | - Muhammad Imran Khan
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, 38000, Pakistan.
| | - Fiza Amjad
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, 38000, Pakistan
| | - Naeem Khan
- Agronomy Department, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL, 32611, USA
| | - Mahmoud F Seleiman
- Plant Production Department, College of Food and Agriculture Sciences, King Saud University, P.O. Box 2460, Riyadh, 11451, Saudi Arabia
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Ullah I, Toor MD, Yerlikaya BA, Mohamed HI, Yerlikaya S, Basit A, Rehman AU. High-temperature stress in strawberry: understanding physiological, biochemical and molecular responses. PLANTA 2024; 260:118. [PMID: 39419853 DOI: 10.1007/s00425-024-04544-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Accepted: 09/30/2024] [Indexed: 10/19/2024]
Abstract
MAIN CONCLUSION Heat stress reduces strawberry growth and fruit quality by impairing photosynthesis, disrupting hormone regulation, and altering mineral nutrition. Multi-omics studies show extensive transcriptional, post-transcriptional, proteomic and metabolomic under high temperatures. Garden strawberry is a globally cultivated, economically important fruit crop highly susceptible to episodic heat waves and chronically rising temperatures associated with climate change. Heat stress negatively affects the growth, development, and quality of strawberries. Elevated temperatures affect photosynthesis, respiration, water balance, hormone signaling, and carbohydrate metabolism in strawberries. Heat stress reduces the size and number of leaves, the number of crowns, the differentiation of flower buds, and the viability of pollen and fruit set, ultimately leading to a lower yield. On a physiological level, heat stress reduces membrane stability, increases the production of reactive oxygen species, and reduces the antioxidant capacity of strawberries. Heat-tolerant varieties have better physiological and biochemical adaptation mechanisms compared to heat-sensitive varieties. Breeding heat-tolerant strawberry cultivars involves selection for traits such as increased leaf temperature, membrane thermostability, and chlorophyll content. Multi-omics studies show extensive transcriptional, post-transcriptional, proteomic, metabolomic, and ionomic reprogramming at high temperatures. Integrative-omics approaches combine multiple omics datasets to obtain a systemic understanding of the responses to heat stress in strawberries. This article summarizes the deciphering of strawberry responses to heat stress using physiological, biochemical, and molecular approaches that will enable the development of resilient adaptation strategies that sustain strawberry production under global climate change.
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Affiliation(s)
- Izhar Ullah
- Department of Horticulture, Faculty of Agriculture, Ondokuz Mayis University, Samsun, Turkey
| | - Muhammad Danish Toor
- Department of Botany, Faculty of Science and Technology, İnstitute of Ecology and Earth Science's, Chair of Mycology, University of Tartu, Tartu, Estonia
- Department of Agrochemistry and Soil Science, Faculty of Agronomy, Agricultural University, Plovdiv, Bulgaria
| | - Bayram Ali Yerlikaya
- Department of Plant Biotechnology, Faculty of Agriculture, Ondokuz Mayis University, Samsun, Turkey
| | - Heba I Mohamed
- Department of Biological and Geological Sciences, Faculty of Education, Ain Shams University, Cairo, Egypt.
| | - Seher Yerlikaya
- Department of Plant Biotechnology, Faculty of Agriculture, Ondokuz Mayis University, Samsun, Turkey
| | - Abdul Basit
- Department of Horticultural Science, Kyungpook National University, 41566, Daegu, South Korea
| | - Attiq Ur Rehman
- Department of Agricultural Sciences, Faculty of Agriculture and Forestry, The University of Helsinki, 00790, Helsinki, Finland
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10
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Moloi SJ, Alqarni AO, Brown AP, Goche T, Shargie NG, Moloi MJ, Gokul A, Chivasa S, Ngara R. Comparative Physiological, Biochemical, and Leaf Proteome Responses of Contrasting Wheat Varieties to Drought Stress. PLANTS (BASEL, SWITZERLAND) 2024; 13:2797. [PMID: 39409667 PMCID: PMC11478804 DOI: 10.3390/plants13192797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/08/2024] [Revised: 09/26/2024] [Accepted: 10/01/2024] [Indexed: 10/20/2024]
Abstract
Drought stress severely affects crop productivity and threatens food security. As current trends of global warming are predicted to exacerbate droughts, developing drought-resilient crops becomes urgent. Here, we used the drought-tolerant (BW35695) and drought-sensitive (BW4074) wheat varieties to investigate the physiological, biochemical, and leaf proteome responses underpinning drought tolerance. In response to drought, the tolerant variety had higher osmolyte accumulation and maintained higher leaf water content than the sensitive variety. BW35695 also had an enhanced antioxidant enzyme capacity and reduced reactive oxygen species (ROS), resulting in diminished membrane lipid damage, as reflected by malondialdehyde content. Proteomic analysis revealed that drought-induced differential expression of proteins involved in diverse biological processes in both wheat varieties, including primary and secondary metabolism, protein synthesis/folding/degradation, defense/ROS detoxification, energy, transcription, and cell structure. Notably, photosynthesis emerged as the most enriched biochemical process targeted for suppression in the drought-tolerant BW35695 wheat, but not in drought-sensitive BW4074, possibly as a survival strategy for averting cell damage inflicted by photosynthesis-derived ROS. Additionally, protein synthesis-related proteins were highly upregulated in BW35695, presumably to drive cell-wide stress-adaptive responses. The protein network identified here will be useful in further studies to understand the molecular basis for divergent drought response phenotypes in crops.
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Affiliation(s)
- Sellwane J. Moloi
- Department of Plant Sciences, University of the Free State, Qwaqwa Campus, P. Bag X13, Phuthaditjhaba 9866, South Africa; (S.J.M.); (A.G.)
| | - Ali O. Alqarni
- Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK; (A.O.A.); (A.P.B.); (T.G.); (S.C.)
| | - Adrian P. Brown
- Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK; (A.O.A.); (A.P.B.); (T.G.); (S.C.)
| | - Tatenda Goche
- Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK; (A.O.A.); (A.P.B.); (T.G.); (S.C.)
- Department of Crop Science, Bindura University of Science Education, P. Bag 1020, Bindura, Zimbabwe
| | - Nemera G. Shargie
- Agricultural Research Council-Grain Crops, P. Bag X1251, Potchefstroom 2520, South Africa;
| | - Makoena J. Moloi
- Department of Plant Sciences-Botany Division, University of the Free State, 205 Nelson Mandela Drive, Bloemfontein 9301, South Africa;
| | - Arun Gokul
- Department of Plant Sciences, University of the Free State, Qwaqwa Campus, P. Bag X13, Phuthaditjhaba 9866, South Africa; (S.J.M.); (A.G.)
| | - Stephen Chivasa
- Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK; (A.O.A.); (A.P.B.); (T.G.); (S.C.)
| | - Rudo Ngara
- Department of Plant Sciences, University of the Free State, Qwaqwa Campus, P. Bag X13, Phuthaditjhaba 9866, South Africa; (S.J.M.); (A.G.)
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Mondal NK, Mondal B, Koley R, Koley A, Balachandran S. Efficacy of two different forms of selenium towards reduction of arsenic toxicity and accumulation in Cicer arietinum L. J Trace Elem Med Biol 2024; 86:127541. [PMID: 39383660 DOI: 10.1016/j.jtemb.2024.127541] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/15/2024] [Revised: 09/01/2024] [Accepted: 10/01/2024] [Indexed: 10/11/2024]
Abstract
Arsenic migration from soil to crop plants and subsequently human consumption of contaminated foodstuffs is a serious threat for society. In the present study, two oxidation states of selenium [Se(0) and Se(VI)] were used to check their efficacy towards amelioration of arsenic toxicity in chickpeas (Cicer arietinum L.). Three different concentrations (1, 5, and 10 mg/L) of both oxidation states of selenium were applied separately and in combination against a fixed dose (10 mg/L) of arsenic [(As(V)] treatment on chickpea seedlings. Further, seed germination and seedling growth attributes, oxidative stress, and antioxidant defense under different treatments were analyzed. The changes in anatomical structures and arsenic accumulation in different parts of seedlings were also studied. Results revealed that increased generation of oxidative stress affected physiobiochemical parameters of seedlings and diminished plant growth and deformation in vascular bundles under arsenic stress. However, the combined application of Se with As showed overall improvement in seedling growth, reduced oxidative stress, and organized vascular bundles of chickpea seedlings as compared to arsenic stress alone. The arsenic uptake and accumulation in chickpea seedlings were also reduced upon supplementation of Se. The highest reduction of arsenic accumulation by 42 and 56 % in roots, while 47 and 58 % in shoots were recorded by the application of 10 mg/L of Se(0) and Se (VI) under As stress, respectively. Overall, Se(VI) showed much better performance towards the minimization of arsenic-induced phytotoxicity and arsenic accumulation as compared to Se(0). Therefore, this study explored the efficacy of different forms of selenium towards the mitigation of arsenic toxicity in plants.
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Affiliation(s)
- Naba Kumar Mondal
- Environmental Chemistry Laboratory, Department of Environmental Science, The University of Burdwan, Burdwan, West Bengal, India.
| | - Barnali Mondal
- Environmental Chemistry Laboratory, Department of Environmental Science, The University of Burdwan, Burdwan, West Bengal, India
| | - Rajesh Koley
- Environmental Chemistry Laboratory, Department of Environmental Science, The University of Burdwan, Burdwan, West Bengal, India
| | - Apurba Koley
- Department of Environmental Studies, Siksha-Bhavana, Visva-Bharati, Santiniketan, West Bengal, India
| | - Srinivasan Balachandran
- Department of Environmental Studies, Siksha-Bhavana, Visva-Bharati, Santiniketan, West Bengal, India
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Li X, Liu H, He F, Li M, Zi Y, Long R, Zhao G, Zhu L, Hong L, Wang S, Kang J, Yang Q, Lin C. Multi-omics integrative analysis provided new insights into alkaline stress in alfalfa. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 215:109048. [PMID: 39159534 DOI: 10.1016/j.plaphy.2024.109048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2024] [Revised: 07/29/2024] [Accepted: 08/13/2024] [Indexed: 08/21/2024]
Abstract
Saline-alkali stress is one of the main abiotic stresses that limits plant growth. Salt stress has been widely studied, but alkaline salt degradation caused by NaHCO3 has rarely been investigated. In the present study, the alfalfa cultivar 'Zhongmu No. 1' was treated with 50 mM NaHCO3 (0, 4, 8, 12 and 24 h) to study the resulting enzyme activity and changes in mRNA, miRNA and metabolites in the roots. The results showed that the enzyme activity changed significantly after alkali stress treatment. The genomic analysis revealed 14,970 differentially expressed mRNAs (DEMs), 53 differentially expressed miRNAs (DEMis), and 463 differentially accumulated metabolites (DAMs). Combined analysis of DEMs and DEMis revealed that 21 DEMis negatively regulated 42 DEMs. In addition, when combined with Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of DEMs and DAMs, we found that phenylpropanoid biosynthesis, flavonoid biosynthesis, starch and sucrose metabolism and plant hormone signal transduction played important roles in the alkali stress response. The results of this study further elucidated the regulatory mechanism underlying the plant response to alkali stress and provided valuable information for the breeding of new saline-alkaline tolerance plant varieties.
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Affiliation(s)
- Xianyang Li
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China; College of Life Science and Technology, Harbin Normal University, Harbin, 150025, China
| | - Hao Liu
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Fei He
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Mingna Li
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Yunfei Zi
- Institute of Forage Crop Science, Ordos Academy of Agricultural and Animal Husbandry Sciences, Ordos, 017000, China
| | - Ruicai Long
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Guoqing Zhao
- Institute of Forage Crop Science, Ordos Academy of Agricultural and Animal Husbandry Sciences, Ordos, 017000, China
| | - Lihua Zhu
- Institute of Forage Crop Science, Ordos Academy of Agricultural and Animal Husbandry Sciences, Ordos, 017000, China
| | - Ling Hong
- Institute of Forage Crop Science, Ordos Academy of Agricultural and Animal Husbandry Sciences, Ordos, 017000, China
| | - Shiqing Wang
- Institute of Forage Crop Science, Ordos Academy of Agricultural and Animal Husbandry Sciences, Ordos, 017000, China
| | - Junmei Kang
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Qingchuan Yang
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Chen Lin
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
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13
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Huang Y, Huang L, Cheng M, Li C, Zhou X, Ullah A, Sarfraz S, Khatab A, Xie G. Progresses in biosynthesis pathway, regulation mechanism and potential application of 2-acetyl-1-pyrroline in fragrant rice. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 215:109047. [PMID: 39153390 DOI: 10.1016/j.plaphy.2024.109047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 08/12/2024] [Accepted: 08/13/2024] [Indexed: 08/19/2024]
Abstract
The formation of rice aroma is a complex process that is influenced by genetic and environmental factors. More than 500 fragrance compounds have been documented in fragrant rice, among which 2-AP dominates the aroma of rice. This paper introduced the identification of OsBadh2 in the biosynthesis of 2-AP in rice. Then, non-enzymatic and enzymatic pathways of the 2-AP biosynthesis have been comprehensively investigated. In detail, 2-AP biosynthesis-associated enzyme, such as OsBADH2, OsP5CS, OsGAD, OsGAPDH, OsProDH, OsOAT, OsODC and OsDAO, have been summarized, while MG and fatty acids are also implicated in modulating the biosynthesis of 2-AP by providing the acetyl groups. Moreover, extensive collections of traditional fragrant rice varieties have been collated, together with the OsBadh2 haplotypes of 312 fragrant rice germplasm in China. And finally, genetic engineering of OsBadh2 and other genes in the 2-AP biosynthesis to develop fragrant rice are discussed.
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Affiliation(s)
- Yajing Huang
- MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Lei Huang
- MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China; The People's Government of Zougang Town, Xiaochang County, Xiaogan City, Hubei, 432910, China
| | - Maozhi Cheng
- MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Chuanhao Li
- MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Xiaofeng Zhou
- MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Aman Ullah
- MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Samina Sarfraz
- MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Ahmed Khatab
- MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China; Rice Research and Training Center, 33717, Sakha, Kafr El-Sheikh, Egypt
| | - Guosheng Xie
- MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
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Kaachra A, Tamang A, Hallan V. An Expedited Qualitative Profiling of Free Amino Acids in Plant Tissues Using Liquid Chromatography-Mass Spectrometry (LC-MS) in Conjunction With MS-DIAL. JOURNAL OF MASS SPECTROMETRY : JMS 2024; 59:e5094. [PMID: 39323213 DOI: 10.1002/jms.5094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Revised: 09/02/2024] [Accepted: 09/10/2024] [Indexed: 09/27/2024]
Abstract
The estimation of relative levels of amino acids is crucial for understanding various biological processes in plants, including photosynthesis, stress tolerance, and the uptake and translocation of nutrients. A wide range of liquid chromatography (LC; HPLC/UHPLC)-based methods is available for measuring the quantity of amino acids in plants. Additionally, the coupling of LC with mass spectrometry (MS) significantly enhanced the robustness of existing chromatographic methods used for amino acid quantification. However, accurate annotation and integration of mass peaks can be challenging for plant biologists with limited experience in analyzing MS data, especially in studies involving large datasets with multiple treatments and/or replicates. Further, there are instances when the experiment demands an overall view of the amino acids profile rather than focusing on absolute quantification. The present protocol provides a detailed LC-MS method for obtaining a qualitative amino acids profile using MS-DIAL, a versatile and user-friendly program for processing MS data. Free amino acids were extracted from the leaves of control and Tomato leaf curl Palampur virus (ToLCPalV)-infected Nicotiana benthamiana plants. Extracted amino acids were derivatized and separated using UHPLC-QTOF, with each amino acid subsequently identified by aligning mass data with a custom text library created in MS-DIAL. Further, MS-DIAL was employed for internal standard-based normalization to obtain a qualitative profile of 15 amino acids in control and virus-infected plants. The outlined method aims to simplify the processing of MS data to quickly assess any modulation in amino acid levels in plants with a higher degree of confidence.
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Affiliation(s)
- Anish Kaachra
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| | - Anish Tamang
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| | - Vipin Hallan
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
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15
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Zi N, Ren W, Guo H, Yuan F, Liu Y, Fry E. DNA Methylation Participates in Drought Stress Memory and Response to Drought in Medicago ruthenica. Genes (Basel) 2024; 15:1286. [PMID: 39457410 PMCID: PMC11507442 DOI: 10.3390/genes15101286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Revised: 09/18/2024] [Accepted: 09/20/2024] [Indexed: 10/28/2024] Open
Abstract
Background: Drought is currently a global environmental problem, which inhibits plant growth and development and seriously restricts crop yields. Many plants exposed to drought stress can generate stress memory, which provides some advantages for resisting recurrent drought. DNA methylation is a mechanism involved in stress memory formation, and many plants can alter methylation levels to form stress memories; however, it remains unclear whether Medicago ruthenica exhibits drought stress memory, as the epigenetic molecular mechanisms underlying this process have not been described in this species. Methods: We conducted methylome and transcriptome sequencing to identify gene methylation and expression changes in plants with a history of two drought stress exposures. Results: Methylation analysis showed that drought stress resulted in an approximately 4.41% decrease in M. ruthenica genome methylation levels. The highest methylation levels were in CG dinucleotide contexts, followed by CHG contexts, with CHH contexts having the lowest levels. Analysis of associations between methylation and transcript levels showed that most DNA methylation was negatively correlated with gene expression except methylation within CHH motifs in gene promoter regions. Genes were divided into four categories according to the relationship between methylation and gene expression; the up-regulation of hypo-methylated gene expression accounted for the vast majority (692 genes) and included genes encoding factors key for abscisic acid (ABA) and proline synthesis. The hypo-methylation of the promoter and body regions of these two gene groups induced increased gene transcription levels. Conclusions: In conclusion, DNA methylation may contribute to drought stress memory formation and maintenance in M. ruthenica by increasing the transcription levels of genes key for ABA and proline biosynthesis.
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Affiliation(s)
- Na Zi
- Inner Mongolia Key Laboratory of Grassland Ecology, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China;
| | - Weibo Ren
- Inner Mongolia Key Laboratory of Grassland Ecology, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China;
| | - Huiqin Guo
- School of Life Science, Inner Mongolia Agriculture University, Hohhot 010010, China;
| | - Feng Yuan
- Key Laboratory of Forage Breeding and Seed Production of Inner Mongolia, National Center of Pratacultural Technology Innovation, Hohhot 010010, China; (F.Y.); (Y.L.)
| | - Yaling Liu
- Key Laboratory of Forage Breeding and Seed Production of Inner Mongolia, National Center of Pratacultural Technology Innovation, Hohhot 010010, China; (F.Y.); (Y.L.)
| | - Ellen Fry
- Department of Biology, Edge Hill University, Ormskirk L39 4QP, UK;
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Budzyńska S, Rudnicki K, Budka A, Niedzielski P, Mleczek M. Dendroremediation of soil contaminated by mining sludge: A three-year study on the potential of Tilia cordata and Quercus robur in remediation of multi-element pollution. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 944:173941. [PMID: 38880152 DOI: 10.1016/j.scitotenv.2024.173941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2024] [Revised: 06/09/2024] [Accepted: 06/10/2024] [Indexed: 06/18/2024]
Abstract
The vast amounts of mining and metallurgical wastes containing unimaginable quantities of toxic metal(loid)s require searching for managed ways. The study aimed to long-term assess the growth, elements accumulation (As, Cd, Hg, In, Mn, Mo, Pb, Sb, Sn, Ti, Tl, Zn) and proline content in 2-year-old Tilia cordata Mill. and Quercus robur L. seedlings growing under 1 and 3% extremely polluted mining sludge (MS) after 1, 2 and 3 years. Both species were able to grow efficiently without significant differences resulting from the impact of MS. The overall rise was higher for T. cordata than for Q. robur. The accumulation ability for As, Hg, In, Mn, Mo, Pb, Ti, and Zn in the whole plant was significantly higher for T. cordata, while Cd, Sb, Sn and Tl did not differ considerably between species. The highest content was found for As, Mn and Zn (68.7, 158, and 157 mg per plant, respectively) for T. cordata after 3 years of growth. The calculated Bioconcentration Factors were the highest for Cu (1.23), In (6.86), and Zn (38.4) for Q. robur, as well as for As (1.55), Hg (3.24), Mn (32.8), Mo (1.64) and Ti (18.0) for T. cordata after 3 years. The highest Translocation Factors were observed for In (1.35) and Sn (1.25) after 3 years, as well as for Mn (2.72, 3.38, and 3.03 after 1, 2, and 3 years) for Q. robur seedlings. The proline content was higher for Q. robur, regardless of which organ was examined, and the differences increased with the time of the experiment and the amount of MS addition (possibly more sensitive to stress). Young T. cordata seedlings show much greater potential than Q. robur. This is the first time that a demonstration of the high potential of long-living trees in multi-element MS remediation has been described.
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Affiliation(s)
- Sylwia Budzyńska
- Poznań University of Life Sciences, Faculty of Forestry and Wood Technology, Department of Chemistry, Wojska Polskiego 75, 60-625 Poznań, Poland.
| | - Konrad Rudnicki
- University of Łódź, Faculty of Chemistry, Department of Inorganic and Analytical Chemistry, Tamka 12, 91-403 Łódź, Poland
| | - Anna Budka
- Poznań University of Life Sciences, Faculty of Environmental and Mechanical Engineering, Department of Construction and Geoengineering, Wojska Polskiego 28, 60-637 Poznań, Poland
| | - Przemysław Niedzielski
- Adam Mickiewicz University, Faculty of Chemistry, Uniwersytetu Poznańskiego 8, 61-614 Poznań, Poland
| | - Mirosław Mleczek
- Poznań University of Life Sciences, Faculty of Forestry and Wood Technology, Department of Chemistry, Wojska Polskiego 75, 60-625 Poznań, Poland
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17
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Zhang X, Ma H, Jiang P, Chen Y, Ma W, Chen P, Ma H, Li X, Ma J, Sun Q. Transcriptome and metabolism study reveals impact of nitrogen fertilizer on triticale. PROTOPLASMA 2024:10.1007/s00709-024-01986-3. [PMID: 39302434 DOI: 10.1007/s00709-024-01986-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2024] [Accepted: 09/01/2024] [Indexed: 09/22/2024]
Abstract
Autumn-sown forage triticale can effectively leverage the optimal light and heat conditions in Ningxia, a region that boasts an abundance of light and heat resources sufficient for a single seasonal crop, but limited for two seasons. This not only fully utilizes the limited growing season but also significantly improves grass yield and economic efficiency per unit area. To enhance triticale yield in low-light and low-temperature environments, we investigated the impact of applying different concentrations of nitrogen fertilizer on triticale forage yield. Our findings revealed that nitrogen fertilizer application significantly increased triticale biomass, with the N4 treatment group exhibiting the most profound effect. To further explore the mechanisms behind nitrogen fertilizer's regulation of triticale growth and development, we conducted transcriptomic and metabolomic studies. These studies revealed that nitrogen fertilizer application significantly heightened transcription activity and protein synthesis in triticale, fostering the development of its seeds. Additionally, appropriate concentrations of nitrogen fertilizer significantly promoted photosynthesis. Metabolomic analysis revealed that nitrogen fertilizer application increased the levels of proline and O-phosphoethanolamine, enhancing triticale's stress resistance and supporting its growth and development under adverse conditions.
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Affiliation(s)
- Xiaojuan Zhang
- College of Forestry and Prataculture, Ningxia University, Yinchuan, 756002, Ningxia, China
- Guyuan Branch, Ningxia Academy of Agriculture and Forestry Sciences, Guyuan, 756009, Ningxia, China
| | - Hongxiu Ma
- College of Forestry and Prataculture, Ningxia University, Yinchuan, 756002, Ningxia, China
| | - Peng Jiang
- College of Forestry and Prataculture, Ningxia University, Yinchuan, 756002, Ningxia, China
| | - Yongwei Chen
- Agricultural Technology Extension and Service Center of Ningxia Agricultural Reclamation Management Bureau, Yinchuan, 7560021, Ningxia, China
| | - Wenli Ma
- Agricultural Technology Extension and Service Center of Ningxia Agricultural Reclamation Management Bureau, Yinchuan, 7560021, Ningxia, China
| | - Ping Chen
- Agricultural Technology Extension and Service Center of Ningxia Agricultural Reclamation Management Bureau, Yinchuan, 7560021, Ningxia, China
| | - Hongcai Ma
- College of Forestry and Prataculture, Ningxia University, Yinchuan, 756002, Ningxia, China
| | - Xuexue Li
- School of Agriculture, Ningxia University, Yinchuan, 756002, Ningxia, China
| | - Jiale Ma
- School of Agriculture, Ningxia University, Yinchuan, 756002, Ningxia, China
| | - Quan Sun
- College of Forestry and Prataculture, Ningxia University, Yinchuan, 756002, Ningxia, China.
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18
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Giovenali G, Di Romana ML, Capoccioni A, Riccardi V, Kuzmanović L, Ceoloni C. Exploring Thinopyrum spp. Group 7 Chromosome Introgressions to Improve Durum Wheat Performance under Intense Daytime and Night-Time Heat Stress at Anthesis. PLANTS (BASEL, SWITZERLAND) 2024; 13:2605. [PMID: 39339580 PMCID: PMC11434826 DOI: 10.3390/plants13182605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2024] [Revised: 09/06/2024] [Accepted: 09/12/2024] [Indexed: 09/30/2024]
Abstract
Durum wheat (DW) is one of the major crops grown in the Mediterranean area, a climate-vulnerable region where the increase in day/night (d/n) temperature is severely threatening DW yield stability. In order to improve DW heat tolerance, the introgression of chromosomal segments derived from the wild gene pool is a promising strategy. Here, four DW-Thinopyrum spp. near-isogenic recombinant lines (NIRLs) were assessed for their physiological response and productive performance after intense heat stress (IH, 37/27 °C d/n) had been applied for 3 days at anthesis. The NIRLs included two primary types (R5, R112), carriers (+) of a differently sized Th. ponticum 7el1L segment on the DW 7AL arm, and two corresponding secondary types (R69-9/R5, R69-9/R112), possessing a Th. elongatum 7EL segment distally inserted into the 7el1L ones. Their response to the IH stress was compared to that of corresponding non-carrier sib lines (-) and the heat-tolerant cv. Margherita. Overall, the R112+, R69-9/R5+ and R69-9/R112+ NIRLs exhibited a tolerant behaviour towards the applied stress, standing out for the maintenance of leaf relative water content but also for the accumulation of proline and soluble sugars in the flag leaf and the preservation of photosynthetic efficiency. As a result, all the above three NIRLs (R112+ > R69-9/R5+ > R69-9/R112+) displayed good yield stability under the IH, also in comparison with cv. Margherita. R112+ particularly relied on the strength of spike fertility/grain number traits, while R69-9/R5+ benefited from efficient compensation by the grain weight increase. This work largely confirmed and further substantiated the value of exploiting the wild germplasm of Thinopyrum species as a useful source for the improvement of DW tolerance to even extreme abiotic stress conditions, such as the severe heat treatment throughout day- and night-time applied here.
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Affiliation(s)
| | | | | | | | - Ljiljana Kuzmanović
- Department of Agriculture and Forest Sciences (DAFNE), University of Tuscia, 01100 Viterbo, Italy; (G.G.); (M.L.D.R.); (A.C.); (V.R.)
| | - Carla Ceoloni
- Department of Agriculture and Forest Sciences (DAFNE), University of Tuscia, 01100 Viterbo, Italy; (G.G.); (M.L.D.R.); (A.C.); (V.R.)
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19
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El-Aal MSA, Farag HRM, Elbar OHA, Zayed MS, Khalifa GS, Abdellatif YMR. Synergistic effect of Pseudomonas putida and endomycorrhizal inoculation on the physiological response of onion (Allium cepa L.) to saline conditions. Sci Rep 2024; 14:21373. [PMID: 39266608 PMCID: PMC11393462 DOI: 10.1038/s41598-024-71165-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Accepted: 08/26/2024] [Indexed: 09/14/2024] Open
Abstract
Salinity stress negatively affects the growth and yield of crops worldwide. Onion (Allium cepa L.) is moderately sensitive to salinity. Beneficial microorganisms can potentially confer salinity tolerance. This study investigated the effects of endomycorrhizal fungi (M), Pseudomonas putida (Ps) and their combination (MPs) on onion growth under control (0 ppm), moderate (2000 ppm) and high (4000 ppm) NaCl salinity levels. A pot experiment was conducted with sandy loam soil and onion cultivar Giza 20. Results showed that salinity reduced growth attributes, leaf pigments, biomass and bulb yield while increasing oxidative stress markers. However, individual or combined inoculations significantly increased plant height, bulb diameter and biomass production compared to uninoculated plants under saline conditions. MPs treatment provided the highest stimulation, followed by Pseudomonas and mycorrhizae alone. Overall, dual microbial inoculation showed synergistic interaction, conferring maximum benefits for onion growth, bulbing through integrated physiological and biochemical processes under salinity. Bulb yield showed 3.5, 36 and 83% increase over control at 0, 2000 and 4000 ppm salinity, respectively. In conclusion, combined application of mycorrhizal-Pseudomonas inoculations (MPs) effectively mitigate salinity stress. This approach serves as a promising biotechnology for ensuring sustainable onion productivity under saline conditions.
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Affiliation(s)
- Mona S Abd El-Aal
- Agricultural Botany Department, Faculty of Agriculture, Ain Shams University, Cairo, Egypt
| | - Hanaa R M Farag
- Biochemistry Department, Faculty of Agriculture, Ain Shams University, Cairo, Egypt
| | - Ola H Abd Elbar
- Agricultural Botany Department, Faculty of Agriculture, Ain Shams University, Cairo, Egypt
| | - Mona S Zayed
- Agricultural Microbiology Department, Faculty of Agriculture, Ain Shams University, Cairo, Egypt
| | - Gamal S Khalifa
- Agricultural Botany Department, Faculty of Agriculture, Ain Shams University, Cairo, Egypt
| | - Yasmin M R Abdellatif
- Agricultural Botany Department, Faculty of Agriculture, Ain Shams University, Cairo, Egypt.
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20
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Tadić J, Dumičić G, Veršić Bratinčević M, Vitko S, Radić Brkanac S. Challenges of Salinity Intrusion and Drought Stress on Olive Tree Cultivation on Mljet Island. PLANTS (BASEL, SWITZERLAND) 2024; 13:2549. [PMID: 39339526 PMCID: PMC11435225 DOI: 10.3390/plants13182549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Revised: 09/02/2024] [Accepted: 09/06/2024] [Indexed: 09/30/2024]
Abstract
Understanding genotype-specific responses to environmental stressors is vital for developing resilience strategies that ensure sustainable olive cultivation and productivity. In this work, cultivar 'Oblica' and several olive genotypes from the island of Mljet (Croatia) were exposed to short-term (21 days) salinity and drought treatments. In contrast to other olive genotypes, genotype M29 as well as cultivar 'Oblica' managed to maintain growth and chlorophyll a levels under salinity stress to the same level as the control. Drought, however, significantly reduced the growth parameters in all olive trees. Cultivar 'Oblica' accumulated the greatest amount of Na+ ions in the leaves compared to olive genotypes from the island of Mljet, demonstrating superior resistance by translocating Na+ to leaf vacuoles. The observed reduction in K+ content in the roots of olive trees under all treatments suggests a generalized stress response. On the other hand, effective Ca2+ uptake has been identified as a crucial energy-saving strategy that olive trees use to cope with brief periods of salinity and drought. The proline content and activities of superoxide dismutase (SOD) and guaiacol peroxidase (GPOX) varied among the olive trees, highlighting the importance of antioxidative capacities and stress adaptation mechanisms. According to the obtained results, stress-resistant olive genotypes like 'Oblica' and M29 show potential for breeding resilient varieties.
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Affiliation(s)
- Josip Tadić
- Institute for Adriatic Crops and Karst Reclamation, 21000 Split, Croatia; (J.T.); (G.D.); (M.V.B.)
- Centre of Excellence for Biodiversity and Molecular Plant Breeding (CoE CroPBioDiv), 10000 Zagreb, Croatia
| | - Gvozden Dumičić
- Institute for Adriatic Crops and Karst Reclamation, 21000 Split, Croatia; (J.T.); (G.D.); (M.V.B.)
| | - Maja Veršić Bratinčević
- Institute for Adriatic Crops and Karst Reclamation, 21000 Split, Croatia; (J.T.); (G.D.); (M.V.B.)
| | - Sandra Vitko
- Department of Biology, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia;
| | - Sandra Radić Brkanac
- Department of Biology, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia;
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21
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Mehla S, Singh Y, Kumar U, Balyan P, Singh KP, Dhankher OP. Overexpression of rice lectin receptor-like kinase, OsLec-RLK, confers salinity stress tolerance and increases seed yield in pigeon pea (Cajanus cajan (L.) Millsp.). PLANT CELL REPORTS 2024; 43:230. [PMID: 39251423 DOI: 10.1007/s00299-024-03314-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Accepted: 08/10/2024] [Indexed: 09/11/2024]
Abstract
KEY MESSAGE OsLec-RLK overexpression enhances cell signalling and salt stress tolerance in pigeon pea, enhancing seed yield and harvest index and thus, enabling marginal lands to increase food and nutritional security. Lectin Receptor-like kinases (Lec-RLKs) are highly effective cell signaling molecules that counteract various stresses, including salt stress. We engineered pigeon pea by overexpressing OsLec-RLK gene for enhancing salt tolerance. The OsLec-RLK overexpression lines demonstrated superior performance under salt stress, from vegetative to reproductive phase, compared to wild types (WT). The overexpression lines had significantly higher K+/Na+ ratio than WT exposed to 100 mM NaCl. Under salt stress, transgenic lines showed higher levels of chlorophyll, proline, total soluble sugars, relative water content, and peroxidase and catalase activity than WT plants. Membrane injury index and lipid peroxidation were significantly reduced in transgenic lines. Analysis of phenological and yield attributes confirmed that the OsLec-RLK pigeon pea lines maintain plant vigor, with 10.34-fold increase in seed yield (per plant) and 4-5-fold increase in harvest index of overexpression lines, compared to wild type. Meanwhile, the overexpression of OsLec-RLK up-regulated the expression levels of histone deacetylase1, acyl CoA, ascorbate peroxidase, peroxidase, glutathione reductase and catalase, which were involved in the K+/Na+ homeostasis pathway. This study showed the potential of OsLec-RLK gene for increasing crop productivity and yields under salt stress and enabling the crops to be grown on marginal lands for increasing food and nutritional security.
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Affiliation(s)
- Sheetal Mehla
- Department of Molecular Biology and Biotechnology, College of Biotechnology, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Yogita Singh
- Department of Molecular Biology and Biotechnology, College of Biotechnology, CCS Haryana Agricultural University, Hisar, 125004, India
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA, 01003, USA
| | - Upendra Kumar
- Department of Molecular Biology and Biotechnology, College of Biotechnology, CCS Haryana Agricultural University, Hisar, 125004, India.
- Department of Plant Science, Mahatma Jyotiba Phule Rohilkhand University, Bareilly, 243006, India.
| | - Priyanka Balyan
- Department of Botany, Deva Nagri P.G. College, CCS University, Meerut, 245206, India
| | - Krishna Pal Singh
- Biophysics Unit, College of Basic Sciences & Humanities, GB Pant University of Agriculture & Technology, Pantnagar, 263145, India
- Vice-Chancellor's Secretariat, Mahatma Jyotiba Phule Rohilkhand University, Bareilly, 243001, India
| | - Om Parkash Dhankher
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA, 01003, USA.
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22
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Gupta A, Bharati R, Kubes J, Popelkova D, Praus L, Yang X, Severova L, Skalicky M, Brestic M. Zinc oxide nanoparticles application alleviates salinity stress by modulating plant growth, biochemical attributes and nutrient homeostasis in Phaseolus vulgaris L. FRONTIERS IN PLANT SCIENCE 2024; 15:1432258. [PMID: 39297008 PMCID: PMC11408239 DOI: 10.3389/fpls.2024.1432258] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Accepted: 08/19/2024] [Indexed: 09/21/2024]
Abstract
Salt stress poses a significant challenge to global agriculture, adversely affecting crop yield and food production. The current study investigates the potential of Zinc Oxide (ZnO) nanoparticles (NPs) in mitigating salt stress in common beans. Salt-stressed bean plants were treated with varying concentrations of NPs (25 mg/L, 50 mg/L, 100 mg/L, 200 mg/L) using three different application methods: foliar application, nano priming, and soil application. Results indicated a pronounced impact of salinity stress on bean plants, evidenced by a reduction in fresh weight (24%), relative water content (27%), plant height (33%), chlorophyll content (37%), increased proline (over 100%), sodium accumulation, and antioxidant enzyme activity. Application of ZnO NPs reduced salt stress by promoting physiological growth parameters. The NPs facilitated enhanced plant growth and reduced reactive oxygen species (ROS) generation by regulating plant nutrient homeostasis and chlorophyll fluorescence activity. All the tested application methods effectively mitigate salt stress, with nano-priming emerging as the most effective approach, yielding results comparable to control plants for the tested parameters. This study provides the first evidence that ZnO NPs can effectively mitigate salt stress in bean plants, highlighting their potential to address salinity-induced growth inhibition in crops.
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Affiliation(s)
- Aayushi Gupta
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Prague, Czechia
| | - Rohit Bharati
- Department of Economic Theories, Faculty of Economics and Management, Czech University of Life Sciences Prague, Prague, Czechia
| | - Jan Kubes
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Prague, Czechia
| | - Daniela Popelkova
- Materials Chemistry Department, Institute of Inorganic Chemistry AS CR v.v.i., Husinec-Řež, Czechia
| | - Lukas Praus
- Department of Agro-Environmental Chemistry and Plant Nutrition, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Prague, Czechia
| | - Xinghong Yang
- College of Life Sciences, State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, China
| | - Lucie Severova
- Department of Economic Theories, Faculty of Economics and Management, Czech University of Life Sciences Prague, Prague, Czechia
| | - Milan Skalicky
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Prague, Czechia
| | - Marian Brestic
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Prague, Czechia
- College of Life Sciences, State Key Laboratory of Crop Biology, Shandong Agricultural University, Taian, China
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23
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Shilky, Baishya R, Saikia P. Identification of urban street trees for green belt development for optimizing pollution mitigation in Delhi, India. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:54962-54978. [PMID: 39223410 DOI: 10.1007/s11356-024-34802-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Accepted: 08/22/2024] [Indexed: 09/04/2024]
Abstract
The current study evaluated the effects of air pollution on selected street trees in the National Capital Territory during the pre- and post-monsoon seasons to identify the optimally suitable tree for green belt development in Delhi. The identification was performed by measuring the air pollution tolerance index (APTI), anticipated performance index (API), dust-capturing capacity (DCC) and proline content on the trees. The APTI of street trees of Delhi varied significantly among different tree species (F11,88.91 = 47.18, p < 0.05), experimental sites (F3,12.52 = 6.65, p < 0.001) and between seasons (F1,31.12 = 16.51, p < 0.001), emphasizing the relationships between trees and other types of variables such as the climate and level of pollution, among other factors. This variability emphasizes the need to choose trees to use for urban greening in the improvement of air quality in different environments within cities. Ascorbic acid (AA) concentration and relative water content (RWC) had a strong influence on APTI with an extremely significant moderate positive correlation between AA concentration and APTI (r = 0.65, p < 0.001) along with RWC and APTI (r = 0.52, p < 0.001), indicating that higher levels of AA concentration and RWC are linked to increased air pollution tolerance. The PCA bi-plot indicates AA has poor positive loading coefficients with PC1 explaining 29.49% of the total variance in the dataset. The highest APTI was recorded in Azadirachta indica (22.01), Leucaena leucocephala (20.65), Morus alba (20.62), Ficus religiosa (20.61) and Ficus benghalensis (19.61), irrespective of sites and seasons. Similarly, based on API grading, F. religiosa and F. benghalensis were identified as excellent API grade 6 (81-90%), A. indica and Alstonia scholaris as very good API grade 5 (71-80%), M. alba, Pongamia pinnata and Monoon longifolium as good API grade 4 (61-70%) and Plumeria alba as moderate API grade 3 (51-60%) in different streets of Delhi. As these plants are indigenous to the region and hold significant socio-economic and aesthetic significance in Indian societies, they are advisable for avenue plantations as part of various government initiatives to support environmental sustainability.
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Affiliation(s)
- Shilky
- Department of Environmental Sciences, Central University of Jharkhand, Ranchi, 835222, India
| | - Ratul Baishya
- Department of Botany, University of Delhi, New Delhi, India
| | - Purabi Saikia
- Department of Environmental Sciences, Central University of Jharkhand, Ranchi, 835222, India.
- Department of Botany, Banaras Hindu University, Varanasi, 221005, India.
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24
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Janbazi Z, Zarinkamar F, Mohsenzadeh S. Exploring the phytoremediation capacity of Portulaca oleracea naphthalene aromatic hydrocarbon contaminants: a physiological and biochemical study. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:56079-56090. [PMID: 39256335 DOI: 10.1007/s11356-024-34909-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Accepted: 08/30/2024] [Indexed: 09/12/2024]
Abstract
This study is aimed to explore the potential of purslane (Portulaca oleracea L.) as a phytoremediation candidate for the removal of naphthalene in a hydroponic system; moreover, the impacts of naphthalene on the physiological and biochemical characteristics of the plant were investigated. Four different naphthalene concentrations (0, 15, 30, and 60 ppm) were selected for the experiments, with an additional control treatment without plants containing 60 ppm naphthalene. Each treatment, utilizing a total of 20 hydroponic containers, consisted of 4 replicates. The results indicated that naphthalene led to a reduction in root and shoot growth. The root weight decreased from 17 mg in the control group to 6 mg in the 60 ppm naphthalene treatment, while the shoot weight decreased from 107.5 mg in the control group to 65.7 mg in the 60 ppm naphthalene treatment. Besides, the different naphthalene concentrations had an impact on the photosynthetic pigments. Compared to the control treatment, under severe stress conditions, chlorophyll a decreased by 51.85%, chlorophyll b decreased by 48.14%, and carotenoids decreased by 54.59%; however, anthocyanin, compared to the control treatment, increased by 30.1% under severe stress conditions. The presence of naphthalene also resulted in increased levels of malondialdehyde, hydrogen peroxide, and proline in both roots and shoots at various naphthalene concentrations. In roots, malondialdehyde increased by 40.74%, H2O2 increased by 3%, and proline increased by 75.6%, while malondialdehyde increased by 43.16%, H2O2 increased by 5.34%, and proline increased by 59.48% in shoots under severe stress conditions and compared to the control treatment. Root and shoot protein levels decreased by 64.49% and 32.26%, respectively. Furthermore, the antioxidant enzymes of glutathione S-transferase, superoxide dismutase, catalase, and ascorbate peroxidase showed increased activities in both roots and shoots under severe naphthalene stress conditions. Purslane demonstrated the ability to remove approximately 80% of naphthalene from the medium. In conclusion, this plant has an effective participation in naphthalene uptake and mitigates the adverse effects of naphthalene by enhancing antioxidant enzyme and proline activities.
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Affiliation(s)
- Zahra Janbazi
- Department of Plant Biology, Faculty of Basic Sciences, Tarbiat Modares University, Tehran, Iran
| | - Fatemeh Zarinkamar
- Department of Plant Biology, Faculty of Basic Sciences, Tarbiat Modares University, Tehran, Iran.
| | - Sasan Mohsenzadeh
- Department of Biology, Scholl of Sciences, Shiraz University, Shiraz, Iran
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25
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Lin YJ, Yao BT, Zhang Q, Feng YX, Xiang L. Biochemical insights into proline metabolism and its contribution to the endurant cell wall structure under metal stress. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024; 282:116725. [PMID: 39002377 DOI: 10.1016/j.ecoenv.2024.116725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 07/09/2024] [Accepted: 07/10/2024] [Indexed: 07/15/2024]
Abstract
The cell wall serves as the primary barrier against the entry of heavy metal ions into cells. However, excessive accumulation of heavy metals within plants can lead to alterations in the spatial structure and physical properties of the cell wall, thereby affecting the capacity of plants to capture heavy metals. Proline (Pro) is involved in the synthesis of the cell wall, modulating the stability and integrity of its structure. Extensins, core proteins that maintain the cell wall structure, are proline/hydroxyproline-rich glycoproteins that contain the characteristic sequence Ser-[Pro]3-5. They act as intermediates in the regulation of biological processes such as cell wall synthesis, assembly, and signal transduction, typically forming a network structure of cell wall proteins through cross-linking with pectin. This network is essential for the self-assembly expansion of the plant cell wall and plays an indispensable role in cell wall stress signal transduction through its interaction with intracellular signalling molecules. However, the mechanisms by which Pro affects the synthesis of cell wall structural proteins, cell wall assembly, and the sensing of cell wall stress under heavy metal stress remain unclear. This review, from the perspectives of biochemistry and molecular biology, comprehensively elaborates on the impact of Pro and Pro-rich proteins on the structure and function of the cell wall. These findings emphasize the mechanism by which Pro enhances the ability of the cell wall to capture heavy metals, providing new research ideas for the use of genetic engineering to manipulate cell wall synthesis and repair, thereby reducing the phytotoxicity of heavy metals.
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Affiliation(s)
- Yu-Juan Lin
- College of Environmental Science & Engineering, Guilin University of Technology, Guilin 541006, China; The Guangxi Key Laboratory of Theory and Technology for Environmental Pollution Control, Guilin University of Technology, Guilin 541006, China; Collaborative Innovation Center for Water Pollution Control and Water Safety in Karst Area, Guilin University of Technology, Guilin 541006, China
| | - Ben-Tao Yao
- College of Environmental Science & Engineering, Guilin University of Technology, Guilin 541006, China
| | - Qin Zhang
- College of Environmental Science & Engineering, Guilin University of Technology, Guilin 541006, China; The Guangxi Key Laboratory of Theory and Technology for Environmental Pollution Control, Guilin University of Technology, Guilin 541006, China; Collaborative Innovation Center for Water Pollution Control and Water Safety in Karst Area, Guilin University of Technology, Guilin 541006, China
| | - Yu-Xi Feng
- College of Environmental Science & Engineering, Guilin University of Technology, Guilin 541006, China; The Guangxi Key Laboratory of Theory and Technology for Environmental Pollution Control, Guilin University of Technology, Guilin 541006, China; Guangdong-Hong Kong Joint Laboratory for Carbon Neutrality, Jiangmen Laboratory of Carbon Science and Technology, Jiangmen, Guangdong Province 529199, China.
| | - Lei Xiang
- College of Life Science and Technology, Guangzhou, Jinan University 510632, China
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26
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Engelberth J. Green Leaf Volatiles: A New Player in the Protection against Abiotic Stresses? Int J Mol Sci 2024; 25:9471. [PMID: 39273416 PMCID: PMC11395555 DOI: 10.3390/ijms25179471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Revised: 08/29/2024] [Accepted: 08/29/2024] [Indexed: 09/15/2024] Open
Abstract
To date, the role of green leaf volatiles (GLVs) has been mainly constrained to protecting plants against pests and pathogens. However, increasing evidence suggests that among the stresses that can significantly harm plants, GLVs can also provide significant protection against heat, cold, drought, light, and salinity stress. But while the molecular basis for this protection is still largely unknown, it seems obvious that a common theme in the way GLVs work is that most, if not all, of these stresses are associated with physical damage to the plants, which, in turn, is the major event responsible for the production of GLVs. Here, I summarize the current state of knowledge on GLVs and abiotic stresses and provide a model explaining the multifunctionality of these compounds.
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Affiliation(s)
- Jurgen Engelberth
- Department of Integrative Biology, The University of Texas at San Antonio, San Antonio, TX 78247, USA
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27
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El-Sappah AH, Zhu Y, Huang Q, Chen B, Soaud SA, Abd Elhamid MA, Yan K, Li J, El-Tarabily KA. Plants' molecular behavior to heavy metals: from criticality to toxicity. FRONTIERS IN PLANT SCIENCE 2024; 15:1423625. [PMID: 39280950 PMCID: PMC11392792 DOI: 10.3389/fpls.2024.1423625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Accepted: 07/22/2024] [Indexed: 09/18/2024]
Abstract
The contamination of soil and water with high levels of heavy metals (HMs) has emerged as a significant obstacle to agricultural productivity and overall crop quality. Certain HMs, although serving as essential micronutrients, are required in smaller quantities for plant growth. However, when present in higher concentrations, they become very toxic. Several studies have shown that to balance out the harmful effects of HMs, complex systems are needed at the molecular, physiological, biochemical, cellular, tissue, and whole plant levels. This could lead to more crops being grown. Our review focused on HMs' resources, occurrences, and agricultural implications. This review will also look at how plants react to HMs and how they affect seed performance as well as the benefits that HMs provide for plants. Furthermore, the review examines HMs' transport genes in plants and their molecular, biochemical, and metabolic responses to HMs. We have also examined the obstacles and potential for HMs in plants and their management strategies.
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Affiliation(s)
- Ahmed H El-Sappah
- College of Agriculture, Forestry, and Food Engineering, Yibin University, Yibin, Sichuan, China
- Department of Genetics, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
| | - Yumin Zhu
- College of Agriculture, Forestry, and Food Engineering, Yibin University, Yibin, Sichuan, China
| | - Qiulan Huang
- College of Agriculture, Forestry, and Food Engineering, Yibin University, Yibin, Sichuan, China
| | - Bo Chen
- College of Agriculture, Forestry, and Food Engineering, Yibin University, Yibin, Sichuan, China
| | - Salma A Soaud
- Department of Genetics, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
| | | | - Kuan Yan
- College of Agriculture, Forestry, and Food Engineering, Yibin University, Yibin, Sichuan, China
| | - Jia Li
- College of Agriculture, Forestry, and Food Engineering, Yibin University, Yibin, Sichuan, China
| | - Khaled A El-Tarabily
- Department of Biology, College of Science, United Arab Emirates University, Al Ain, United Arab Emirates
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28
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Feng L, Chen Y, Ma T, Zhou C, Sang S, Li J, Ji S. Integrative physiology and transcriptome sequencing reveal differences between G. hirsutum and G. barbadense in response to salt stress and the identification of key salt tolerance genes. BMC PLANT BIOLOGY 2024; 24:787. [PMID: 39164616 PMCID: PMC11337788 DOI: 10.1186/s12870-024-05515-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Accepted: 08/12/2024] [Indexed: 08/22/2024]
Abstract
BACKGROUND Soil salinity is one of the major abiotic stresses that threatens crop growth. Cotton has some degree of salt tolerance, known as the "pioneer crop" of saline-alkali land. Cultivation of cotton is of great significance to the utilization of saline-alkali land and the development of cotton industry. Gossypium hirsutum and G. barbadense, as two major cotton species, are widely cultivated worldwide. However, until recently, the regulatory mechanisms and specific differences of their responses to salt stress have rarely been reported. RESULTS In this study, we comprehensively compared the differences in the responses of G. hirsutum acc. TM-1 and G. barbadense cv. Hai7124 to salt stress. The results showed that Hai7124 exhibited better growth than did TM-1 under salt stress, with greater PRO content and antioxidant capability, whereas TM-1 only presented greater K+ content. Transcriptome analysis revealed significant molecular differences between the two cotton species in response to salt stress. The key pathways of TM-1 induced by salt are mainly related to growth and development, such as porphyrin metabolism, DNA replication, ribosome and photosynthesis. Conversely, the key pathways of Hai7124, such as plant hormone signal transduction, MAPK signaling pathway-plant, and phenylpropanoid biosynthesis, are mainly related to plant defense. Further comparative analyses of differentially expressed genes (DEGs) revealed that antioxidant metabolism, abscisic acid (ABA) and jasmonic acid (JA) signalling pathways were more strongly activated in Hai7124, whereas TM-1 was more active in K+ transporter-related genes and ethylene (ETH) signalling pathway. These differences underscore the various molecular strategies adopted by the two cotton species to navigate through salt stress, and Hai7124 responded more strongly to salt stress, which explains the potential reasons for the greater salt tolerance of Hai7124. Finally, we identified 217 potential salt tolerance-related genes, 167 of which overlapped with the confidence intervals of significant SNPs identified in previous genome-wide association studies (GWASs), indicating the high reliability of these genes. CONCLUSIONS These findings provide new insights into the differences in the regulatory mechanisms of salt tolerance between G. hirsutum and G. barbadense, and identify key candidate genes for salt tolerance molecular breeding in cotton.
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Affiliation(s)
- Liuchun Feng
- Engineering Research Center of Crop Genetic Improvement and Germplasm Innovation in Henan Province, College of Life Sciences, Henan Normal University, Xinxiang, 453007, China
| | - Yu Chen
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat- Sen), Nanjing, 210014, China
| | - Tengyun Ma
- Engineering Research Center of Crop Genetic Improvement and Germplasm Innovation in Henan Province, College of Life Sciences, Henan Normal University, Xinxiang, 453007, China
| | | | - Shifei Sang
- Engineering Research Center of Crop Genetic Improvement and Germplasm Innovation in Henan Province, College of Life Sciences, Henan Normal University, Xinxiang, 453007, China
| | - Junhua Li
- Engineering Research Center of Crop Genetic Improvement and Germplasm Innovation in Henan Province, College of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
| | - Shengdong Ji
- Engineering Research Center of Crop Genetic Improvement and Germplasm Innovation in Henan Province, College of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
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Lee S, Kim JA, Song J, Choe S, Jang G, Kim Y. Plant growth-promoting rhizobacterium Bacillus megaterium modulates the expression of antioxidant-related and drought-responsive genes to protect rice ( Oryza sativa L.) from drought. Front Microbiol 2024; 15:1430546. [PMID: 39234545 PMCID: PMC11371581 DOI: 10.3389/fmicb.2024.1430546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Accepted: 08/08/2024] [Indexed: 09/06/2024] Open
Abstract
Global climate change poses a significant threat to plant growth and crop yield and is exacerbated by environmental factors, such as drought, salinity, greenhouse gasses, and extreme temperatures. Plant growth-promoting rhizobacteria (PGPR) help plants withstand drought. However, the mechanisms underlying PGPR-plant interactions remain unclear. Thus, this study aimed to isolate PGPR, Bacillus megaterium strains CACC109 and CACC119, from a ginseng field and investigate the mechanisms underlying PGPR-stimulated tolerance to drought stress by evaluating their plant growth-promoting activities and effects on rice growth and stress tolerance through in vitro assays, pot experiments, and physiological and molecular analyses. Compared with B. megaterium type strain ATCC14581, CACC109 and CACC119 exhibited higher survival rates under osmotic stress, indicating their potential to enhance drought tolerance. Additionally, CACC109 and CACC119 strains exhibited various plant growth-promoting activities, including phosphate solubilization, nitrogen fixation, indole-3-acetic acid production, siderophore secretion, 1-aminocyclopropane-1-carboxylate deaminase activity, and exopolysaccharide production. After inoculation, CACC109 and CACC119 significantly improved the seed germination of rice (Oryza sativa L.) under osmotic stress and promoted root growth under stressed and non-stressed conditions. They also facilitated plant growth in pot experiments, as evidenced by increased shoot and root lengths, weights, and leaf widths. Furthermore, CACC109 and CACC119 improved plant physiological characteristics, such as chlorophyll levels, and production of osmolytes, such as proline. In particular, CACC109- and CACC119-treated rice plants showed better drought tolerance, as evidenced by their higher survival rates, greater chlorophyll contents, and lower water loss rates, compared with mock-treated rice plants. Application of CACC109 and CACC119 upregulated the expression of antioxidant-related genes (e.g., OsCAT, OsPOD, OsAPX, and OsSOD) and drought-responsive genes (e.g., OsWRKY47, OsZIP23, OsDREB2, OsNAC066, OsAREB1, and OsAREB2). In conclusion, CACC109 and CACC119 are promising biostimulants for enhancing plant growth and conferring resistance to abiotic stresses in crop production. Future studies should conduct field trials to validate these findings under real agricultural conditions, optimize inoculation methods for practical use, and further investigate the biochemical and physiological responses underlying the observed benefits.
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Affiliation(s)
- Sanghun Lee
- Department of Research and Development, Center for Industrialization of Agricultural and Livestock Microorganisms, Jeongeup-si, Republic of Korea
| | - Jung-Ae Kim
- Department of Research and Development, Center for Industrialization of Agricultural and Livestock Microorganisms, Jeongeup-si, Republic of Korea
| | - Jeongsup Song
- Department of Research and Development, Center for Industrialization of Agricultural and Livestock Microorganisms, Jeongeup-si, Republic of Korea
| | - Seonbong Choe
- Department of Research and Development, Center for Industrialization of Agricultural and Livestock Microorganisms, Jeongeup-si, Republic of Korea
| | - Geupil Jang
- School of Biological Sciences and Technology, Chonnam National University, Gwangju, Republic of Korea
| | - Yangseon Kim
- Department of Research and Development, Center for Industrialization of Agricultural and Livestock Microorganisms, Jeongeup-si, Republic of Korea
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30
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Permana BH, Krobthong S, Yingchutrakul Y, Thiravetyan P, Treesubsuntorn C. Sansevieria trifasciata's specific metabolite improves tolerance and efficiency for particulate matter and volatile organic compound removal. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 355:124199. [PMID: 38788990 DOI: 10.1016/j.envpol.2024.124199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 04/23/2024] [Accepted: 05/17/2024] [Indexed: 05/26/2024]
Abstract
Phytoremediation has become famous for removing particulate matter (PM) and volatile organic compounds (VOCs), but the ability is affected by plant health. Lately, the priming technique was a simple approach to studying improving plant tolerance against abiotic stress by specific metabolites that accumulated, known as "memory", but the mechanism underlying this mechanism and how long this "memory" was retained in the plant was a lack of study. Sansevieria trifasciata was primed for one week for PM and VOC stress to improve plant efficiency on PM and VOC. After that, the plant was recovered for two- or five-weeks, then re-exposed to the same stress with similar PM and VOC concentrations from cigarette smoke. Primed S. trifasciata showed improved removal of PMs entirely within 2 h and VOC within 24 h. The primed plant can maintain a malondialdehyde (MDA) level and retain the "memory" for two weeks. Metabolomics analysis showed that an ornithine-related compound was accumulated as a responsive metabolite under exposure to PM and VOC stress. Exogenous ornithine can maintain plant efficiency and prevent stress by increasing proline and antioxidant enzymes. This study is the first to demonstrate plant "memory" mechanisms under PM and VOC stress.
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Affiliation(s)
- Bayu Hadi Permana
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok, 10150, Thailand
| | - Sucheewin Krobthong
- Interdisciplinary Graduate Program in Genetic Engineering, Kasetsart University, Bangkok, 10900, Thailand
| | - Yodying Yingchutrakul
- Proteomics Research Team, National Omics Center, NSTDA, Pathum Thani, 12120, Thailand
| | - Paitip Thiravetyan
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok, 10150, Thailand
| | - Chairat Treesubsuntorn
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok, 10150, Thailand.
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31
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Liu QH, Tang JW, Ma ZW, Hong YX, Yuan Q, Chen J, Wen XR, Tang YR, Wang L. Rapid discrimination between wild and cultivated Ophiocordyceps sinensis through comparative analysis of label-free SERS technique and mass spectrometry. Curr Res Food Sci 2024; 9:100820. [PMID: 39263205 PMCID: PMC11387260 DOI: 10.1016/j.crfs.2024.100820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2024] [Revised: 08/01/2024] [Accepted: 08/11/2024] [Indexed: 09/13/2024] Open
Abstract
Ophiocordyceps sinensis is a genus of ascomycete fungi that has been widely used as a valuable tonic or medicine. However, due to over-exploitation and the destruction of natural ecosystems, the shortage of wild O. sinensis resources has led to an increase in artificially cultivated O. sinensis. To rapidly and accurately identify the molecular differences between cultivated and wild O. sinensis, this study employs surface-enhanced Raman spectroscopy (SERS) combined with machine learning algorithms to distinguish the two O. sinensis categories. Specifically, we collected SERS spectra for wild and cultivated O. sinensis and validated the metabolic profiles of SERS spectra using Ultra-Performance Liquid Chromatography coupled with Orbitrap High-Resolution Mass Spectrometry (UPLC-Orbitrap-HRMS). Subsequently, we constructed machine learning classifiers to mine potential information from the spectral data, and the spectral feature importance map is determined through an optimized algorithm. The results indicate that the representative characteristic peaks in the SERS spectra are consistent with the metabolites identified through metabolomics analysis, confirming the feasibility of the SERS method. The optimized support vector machine (SVM) model achieved the most accurate and efficient capacity in discriminating between wild and cultivated O. sinensis (accuracy = 98.95%, 5-fold cross-validation = 98.38%, time = 0.89s). The spectral feature importance map revealed subtle compositional differences between wild and cultivated O. sinensis. Taken together, these results are expected to enable the application of SERS in the quality control of O. sinensis raw materials, providing a foundation for the efficient and rapid identification of their quality and origin.
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Affiliation(s)
- Qing-Hua Liu
- State Key Laboratory of Quality Research in Chinese Medicines, Macau University of Science and Technology, Taipa, Macau SAR, China
| | - Jia-Wei Tang
- Laboratory Medicine, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, Guangdong Province, China
| | - Zhang-Wen Ma
- State Key Laboratory of Quality Research in Chinese Medicines, Macau University of Science and Technology, Taipa, Macau SAR, China
| | - Yong-Xuan Hong
- Laboratory Medicine, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, Guangdong Province, China
| | - Quan Yuan
- Laboratory Medicine, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, Guangdong Province, China
- School of Medical Informatics and Engineering, Xuzhou Medical University, Xuzhou, Jiangsu Province, China
| | - Jie Chen
- Laboratory Medicine, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, Guangdong Province, China
| | - Xin-Ru Wen
- Laboratory Medicine, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, Guangdong Province, China
- School of Medical Informatics and Engineering, Xuzhou Medical University, Xuzhou, Jiangsu Province, China
| | - Yu-Rong Tang
- Department of Laboratory Medicine, Shengli Oilfield Central Hospital, Dongying, Shandong Province, China
| | - Liang Wang
- Laboratory Medicine, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, Guangdong Province, China
- School of Agriculture and Food Sciences, The University of Queensland, Brisbane, Queensland, Australia
- Centre for Precision Health, School of Medical and Health Sciences, Edith Cowan University, Perth, Western Australia, Australia
- Division of Microbiology and Immunology, School of Biomedical Sciences, University of Western Australia, Crawley, Western Australia, Australia
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32
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Wang W, Ge Q, Wen J, Zhang H, Guo Y, Li Z, Xu Y, Ji D, Chen C, Guo L, Xu M, Shi C, Fan G, Xie C. Horizontal gene transfer and symbiotic microorganisms regulate the adaptive evolution of intertidal algae, Porphyra sense lato. Commun Biol 2024; 7:976. [PMID: 39128935 PMCID: PMC11317521 DOI: 10.1038/s42003-024-06663-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2024] [Accepted: 07/31/2024] [Indexed: 08/13/2024] Open
Abstract
Intertidal algae may adapt to environmental challenges by acquiring genes from other organisms and relying on symbiotic microorganisms. Here, we obtained a symbiont-free and chromosome-level genome of Pyropia haitanensis (47.2 Mb), a type of intertidal algae, by using multiple symbiont screening methods. We identified 286 horizontal gene transfer (HGT) genes, 251 of which harbored transposable elements (TEs), reflecting the importance of TEs for facilitating the transfer of genes into P. haitanensis. Notably, the bulked segregant analysis revealed that two HGT genes, sirohydrochlorin ferrochelatase and peptide-methionine (R)-S-oxide reductase, play a significant role in the adaptation of P. haitanensis to heat stress. Besides, we found Pseudomonas, Actinobacteria, and Bacteroidetes are the major taxa among the symbiotic bacteria of P. haitanensis (nearly 50% of the HGT gene donors). Among of them, a heat-tolerant actinobacterial strain (Saccharothrix sp.) was isolated and revealed to be associated with the heat tolerance of P. haitanensis through its regulatory effects on the genes involved in proline synthesis (proC), redox homeostasis (ggt), and protein folding (HSP20). These findings contribute to our understanding of the adaptive evolution of intertidal algae, expanding our knowledge of the HGT genes and symbiotic microorganisms to enhance their resilience and survival in challenging intertidal environments.
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Affiliation(s)
- Wenlei Wang
- Fisheries College, Jimei University, Xiamen, 361021, China
- State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei university, Ningde, China
- Fujian Engineering Research Center of Aquatic Breeding and Healthy Aquaculture, Xiamen, 361021, China
| | - Qijin Ge
- BGI Research, Qingdao, 266555, China
| | - Jian Wen
- Fisheries College, Jimei University, Xiamen, 361021, China
- State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei university, Ningde, China
| | - Han Zhang
- Fisheries College, Jimei University, Xiamen, 361021, China
- State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei university, Ningde, China
| | - Yanling Guo
- Fisheries College, Jimei University, Xiamen, 361021, China
- State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei university, Ningde, China
| | - Zongtang Li
- Fisheries College, Jimei University, Xiamen, 361021, China
- State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei university, Ningde, China
| | - Yan Xu
- Fisheries College, Jimei University, Xiamen, 361021, China
- State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei university, Ningde, China
| | - Dehua Ji
- Fisheries College, Jimei University, Xiamen, 361021, China
- State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei university, Ningde, China
| | - Changsheng Chen
- Fisheries College, Jimei University, Xiamen, 361021, China
- State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei university, Ningde, China
| | | | | | - Chengcheng Shi
- BGI Research, Qingdao, 266555, China
- Qingdao Key Laboratory of Marine Genomics, BGI Research, Qingdao, 266555, China
| | - Guangyi Fan
- BGI Research, Qingdao, 266555, China.
- Qingdao Key Laboratory of Marine Genomics, BGI Research, Qingdao, 266555, China.
- BGI Research, Shenzhen, 518083, China.
| | - Chaotian Xie
- Fisheries College, Jimei University, Xiamen, 361021, China.
- State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei university, Ningde, China.
- Fujian Engineering Research Center of Aquatic Breeding and Healthy Aquaculture, Xiamen, 361021, China.
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33
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Liu X, Wang T, Ruan Y, Xie X, Tan C, Guo Y, Li B, Qu L, Deng L, Li M, Liu C. Comparative Metabolome and Transcriptome Analysis of Rapeseed ( Brassica napus L.) Cotyledons in Response to Cold Stress. PLANTS (BASEL, SWITZERLAND) 2024; 13:2212. [PMID: 39204648 PMCID: PMC11360269 DOI: 10.3390/plants13162212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2024] [Revised: 08/01/2024] [Accepted: 08/06/2024] [Indexed: 09/04/2024]
Abstract
Cold stress affects the seed germination and early growth of winter rapeseed, leading to yield losses. We employed transmission electron microscopy, physiological analyses, metabolome profiling, and transcriptome sequencing to understand the effect of cold stress (0 °C, LW) on the cotyledons of cold-tolerant (GX74) and -sensitive (XY15) rapeseeds. The mesophyll cells in cold-treated XY15 were severely damaged compared to slightly damaged cells in GX74. The fructose, glucose, malondialdehyde, and proline contents increased after cold stress in both genotypes; however, GX74 had significantly higher content than XY15. The pyruvic acid content increased after cold stress in GX74, but decreased in XY15. Metabolome analysis detected 590 compounds, of which 32 and 74 were differentially accumulated in GX74 (CK vs. cold stress) and XY15 (CK vs. cold stressed). Arachidonic acid and magnoflorine were the most up-accumulated metabolites in GX74 subjected to cold stress compared to CK. There were 461 and 1481 differentially expressed genes (DEGs) specific to XY15 and GX74 rapeseeds, respectively. Generally, the commonly expressed genes had higher expressions in GX74 compared to XY15 in CK and cold stress conditions. The expression changes in DEGs related to photosynthesis-antenna proteins, chlorophyll biosynthesis, and sugar biosynthesis-related pathways were consistent with the fructose and glucose levels in cotyledons. Compared to XY15, GX74 showed upregulation of a higher number of genes/transcripts related to arachidonic acid, pyruvic acid, arginine and proline biosynthesis, cell wall changes, reactive oxygen species scavenging, cold-responsive pathways, and phytohormone-related pathways. Taken together, our results provide a detailed overview of the cold stress responses in rapeseed cotyledons.
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Affiliation(s)
- Xinhong Liu
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (X.L.); (Y.G.)
- Key Laboratory of Hunan Provincial on Crop Epigenetic Regulation and Development, Hunan Agricultural University, Changsha 410128, China; (Y.R.); (X.X.); (C.T.)
- Yuelushan Laboratory, Hunan Academy of Agricultural Sciences, Changsha 410125, China
| | - Tonghua Wang
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (X.L.); (Y.G.)
- Yuelushan Laboratory, Hunan Academy of Agricultural Sciences, Changsha 410125, China
| | - Ying Ruan
- Key Laboratory of Hunan Provincial on Crop Epigenetic Regulation and Development, Hunan Agricultural University, Changsha 410128, China; (Y.R.); (X.X.); (C.T.)
| | - Xiang Xie
- Key Laboratory of Hunan Provincial on Crop Epigenetic Regulation and Development, Hunan Agricultural University, Changsha 410128, China; (Y.R.); (X.X.); (C.T.)
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China
| | - Chengfang Tan
- Key Laboratory of Hunan Provincial on Crop Epigenetic Regulation and Development, Hunan Agricultural University, Changsha 410128, China; (Y.R.); (X.X.); (C.T.)
| | - Yiming Guo
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (X.L.); (Y.G.)
- Yuelushan Laboratory, Hunan Academy of Agricultural Sciences, Changsha 410125, China
| | - Bao Li
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (X.L.); (Y.G.)
- Yuelushan Laboratory, Hunan Academy of Agricultural Sciences, Changsha 410125, China
| | - Liang Qu
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (X.L.); (Y.G.)
- Yuelushan Laboratory, Hunan Academy of Agricultural Sciences, Changsha 410125, China
| | - Lichao Deng
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (X.L.); (Y.G.)
- Yuelushan Laboratory, Hunan Academy of Agricultural Sciences, Changsha 410125, China
| | - Mei Li
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (X.L.); (Y.G.)
- Yuelushan Laboratory, Hunan Academy of Agricultural Sciences, Changsha 410125, China
| | - Chunlin Liu
- Key Laboratory of Hunan Provincial on Crop Epigenetic Regulation and Development, Hunan Agricultural University, Changsha 410128, China; (Y.R.); (X.X.); (C.T.)
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China
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Rashid A, Achary VMM, Abdin MZ, Karippadakam S, Parmar H, Panditi V, Prakash G, Bhatnagar-Mathur P, Reddy MK. Cytokinin oxidase2-deficient mutants improve panicle and grain architecture through cytokinin accumulation and enhance drought tolerance in indica rice. PLANT CELL REPORTS 2024; 43:207. [PMID: 39096362 DOI: 10.1007/s00299-024-03289-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Accepted: 07/16/2024] [Indexed: 08/05/2024]
Abstract
KEY MESSAGE The Osckx2 mutant accumulates cytokinin thereby enhancing panicle branching, grain yield, and drought tolerance, marked by improved survival rate, membrane integrity, and photosynthetic function. Cytokinins (CKs) are multifaceted hormones that regulate growth, development, and stress responses in plants. Cytokinins have been implicated in improved panicle architecture and grain yield; however, they are inactivated by the enzyme cytokinin oxidase (CKX). In this study, we developed a cytokinin oxidase 2 (Osckx2)-deficient mutant using CRISPR/Cas9 gene editing in indica rice and assessed its function under water-deficit and salinity conditions. Loss of OsCKX2 function increased grain number, secondary panicle branching, and overall grain yield through improved cytokinin content in the panicle tissue. Under drought conditions, the Osckx2 mutant conserved more water and demonstrated improved water-saving traits. Through reduced transpiration, Osckx2 mutants showed an improved survival response than the wild type to unset dehydration stress. Further, Osckx2 maintained chloroplast and membrane integrity and showed significantly improved photosynthetic function under drought conditions through enhanced antioxidant protection systems. The OsCKX2 function negatively affects panicle grain number and drought tolerance, with no discernible impact in response to salinity. The finding suggests the utility of the beneficial Osckx2 allele in breeding to develop climate-resilient, high-yielding cultivars for future food security.
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Affiliation(s)
- Afreen Rashid
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, Delhi, India, 110067
- Department of Biotechnology, Centre for Transgenic Plant Development, Jamia Hamdard, New Delhi, India, 110062
| | - V Mohan M Achary
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, Delhi, India, 110067.
| | - M Z Abdin
- Department of Biotechnology, Centre for Transgenic Plant Development, Jamia Hamdard, New Delhi, India, 110062
| | - Sangeetha Karippadakam
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, Delhi, India, 110067
| | - Hemangini Parmar
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, Delhi, India, 110067
| | - Varakumar Panditi
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, Delhi, India, 110067
| | - Ganesan Prakash
- Plant Pathology, ICAR-Indian Agricultural Research Institute (IARI), New Delhi, India, 110012
| | - Pooja Bhatnagar-Mathur
- Plant Breeding and Genetics, International Atomic Energy Agency (IAEA), PO-1001400, Vienna, Austria
| | - Malireddy K Reddy
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, Delhi, India, 110067
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35
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Lombardi R, Ramsey JS, Mahoney JE, MacCoss MJ, Heck ML, Slupsky CM. Longitudinal Transcriptomic, Proteomic, and Metabolomic Response of Citrus sinensis to Diaphorina citri Inoculation of Candidatus Liberibacter asiaticus. J Proteome Res 2024; 23:2857-2869. [PMID: 38373055 PMCID: PMC11301674 DOI: 10.1021/acs.jproteome.3c00485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 01/16/2024] [Accepted: 02/02/2024] [Indexed: 02/21/2024]
Abstract
Huanglongbing (HLB) is a fatal citrus disease that is currently threatening citrus varieties worldwide. One putative causative agent, Candidatus Liberibacter asiaticus (CLas), is vectored by Diaphorina citri, known as the Asian citrus psyllid (ACP). Understanding the details of CLas infection in HLB disease has been hindered by its Candidatus nature and the inability to confidently detect it in diseased trees during the asymptomatic stage. To identify early changes in citrus metabolism in response to inoculation of CLas using its natural psyllid vector, leaves from Madam Vinous sweet orange (Citrus sinensis (L.) Osbeck) trees were exposed to CLas-positive ACP or CLas-negative ACP and longitudinally analyzed using transcriptomics (RNA sequencing), proteomics (liquid chromatography-tandem mass spectrometry; data available in Dryad: 10.25338/B83H1Z), and metabolomics (proton nuclear magnetic resonance). At 4 weeks postexposure (wpe) to psyllids, the initial HLB plant response was primarily to the ACP and, to a lesser extent, the presence or absence of CLas. Additionally, analysis of 4, 8, 12, and 16 wpe identified 17 genes and one protein as consistently differentially expressed between leaves exposed to CLas-positive ACP versus CLas-negative ACP. This study informs identification of early detection molecular targets and contributes to a broader understanding of vector-transmitted plant pathogen interactions.
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Affiliation(s)
- Rachel
L. Lombardi
- Department
of Food Science and Technology, University
of California Davis, Davis, California 95616, United States
| | - John S. Ramsey
- Agricultural
Research Service, Emerging Pests and Pathogens
Research Unit, Ithaca, New York 14853, United
States
| | - Jaclyn E. Mahoney
- Boyce
Thompson Institute for Plant Research, Ithaca, New York 14853, United States
| | - Michael J. MacCoss
- Department
of Genome Sciences, University of Washington, Seattle, Washington 98195, United States
| | - Michelle L. Heck
- Agricultural
Research Service, Emerging Pests and Pathogens
Research Unit, Ithaca, New York 14853, United
States
- Plant
Pathology and Plant Microbe Biology Section, School of Integrative
Plant Science, Cornell University, Ithaca, New York 14853, United States
| | - Carolyn M. Slupsky
- Department
of Food Science and Technology, University
of California Davis, Davis, California 95616, United States
- Department
of Nutrition, University of California Davis, Davis, California 95616, United States
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Ejaz U, Khan SM, Khalid N, Jehangir S, Ali Shah SF, Svenning JC. Elucidating the phytoremediation potentials and ecophysiological mechanisms of indicator plants in the industrial polluted region. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 366:121821. [PMID: 39018846 DOI: 10.1016/j.jenvman.2024.121821] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 06/30/2024] [Accepted: 07/08/2024] [Indexed: 07/19/2024]
Abstract
The integrity of natural ecosystems, particularly in the Global South, is increasingly compromised by industrial contaminants. Our study examines the growth of plant species adapted to ecosystems impacted by heavy metal pollution, specifically focusing on their phytoremediation capabilities and tolerance to contaminants. The potential of pollution-tolerant species was evaluated in the industrial subtropical wetland of Sialkot, Pakistan. Employing quantitative ecological methods, data on vegetation, phytosociological attributes, and soil properties were gathered from 450 plots across different pollution gradients. The study pinpointed 17 key indicator species tolerating high heavy metal pollution out of 182 surveyed, using a combination of Indicator Species Analysis (ISA) and the Importance Value Index (IVI). These species demonstrated diverse capacities to extract, stabilize, and accumulate heavy metals (Cr, Zn, Cu, As, Cd, Ni, Hg, and Pb) across varying pollution zones. Notably, Cannabis sativa demonstrated substantial phytoextraction of Zn and Cd, with concentrations reaching 1977.25 μg/g and 1362.78 μg/g, respectively. Arundo donax showed marked hyperaccumulation of Cd, peaking at 410.531 μg/g. Achyranthes aspera was remarkable for its extraction and accumulation of Ni and Cu, with concentrations of 242.412 μg/g and 77.2997 μg/g, respectively. Physiological changes, such as increased proline levels in Cannabis sativa and Achyranthes aspera reaching 39.041 μg/g and 27.523 μg/g under high metal concentrations, indicated adaptation to metal stress. Declines in chlorophyll and carotenoid levels were also observed as metal contamination increased, with up to 35% reductions in some species. These findings underscore the potential efficacy of selected plant species in phytoremediation and highlight the importance of physiological responses in their tolerance to metals, providing valuable information for targeted remediation strategies in polluted ecosystems and improving environmental management and sustainable practices.
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Affiliation(s)
- Ujala Ejaz
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan; Center for Ecological Dynamics in a Novel Biosphere (ECONOVO), Department of Biology, Aarhus University, Ny Munkegade 114, DK-8000, Aarhus C, Denmark.
| | - Shujaul Mulk Khan
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan; Member Pakistan Academy of Sciences, Pakistan.
| | - Noreen Khalid
- Department of Botany, Government College Women University, Sialkot, Pakistan; Faculty of Health and Life Sciences, INTI International University, 71800, Nilai, Negeri Sembilan, Malaysia
| | - Sadia Jehangir
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan; Center for Ecological Dynamics in a Novel Biosphere (ECONOVO), Department of Biology, Aarhus University, Ny Munkegade 114, DK-8000, Aarhus C, Denmark
| | - Shah Fahad Ali Shah
- School of Economics and Management, Yanshan University, Hebei Province, 066004, China
| | - Jens-Christian Svenning
- Center for Ecological Dynamics in a Novel Biosphere (ECONOVO), Department of Biology, Aarhus University, Ny Munkegade 114, DK-8000, Aarhus C, Denmark.
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Haider FU, Zulfiqar U, Ain NU, Mehmood T, Ali U, Ramos Aguila LC, Li Y, Siddique KHM, Farooq M. Managing antimony pollution: Insights into Soil-Plant system dynamics and remediation Strategies. CHEMOSPHERE 2024; 362:142694. [PMID: 38925521 DOI: 10.1016/j.chemosphere.2024.142694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2024] [Revised: 05/28/2024] [Accepted: 06/22/2024] [Indexed: 06/28/2024]
Abstract
Researchers are increasingly concerned about antimony (Sb) in ecosystems and the environment. Sb primarily enters the environment through anthropogenic (urbanization, industries, coal mining, cars, and biosolid wastes) and geological (natural and chemical weathering of parent material, leaching, and wet deposition) processes. Sb is a hazardous metal that can potentially harm human health. However, no comprehensive information is available on its sources, how it behaves in soil, and its bioaccumulation. Thus, this study reviews more than 160 peer-reviewed studies examining Sb's origins, geochemical distribution and speciation in soil, biogeochemical mechanisms regulating Sb mobilization, bioavailability, and plant phytotoxicity. In addition, Sb exposure effects plant physio-morphological and biochemical attributes were investigated. The toxicity of Sb has a pronounced impact on various aspects of plant life, including a reduction in seed germination and impeding plant growth and development, resulting from restricted essential nutrient uptake, oxidative damages, disruption of photosynthetic system, and amino acid and protein synthesis. Various widely employed methods for Sb remediation, such as organic manure and compost, coal fly ash, biochar, phytoremediation, microbial-based bioremediation, micronutrients, clay minerals, and nanoremediation, are reviewed with a critical assessment of their effectiveness, cost-efficiency, and suitability for use in agricultural soils. This review shows how plants deal with Sb stress, providing insights into lowering Sb levels in the environment and lessening risks to ecosystems and human health along the food chain. Examining different methods like bioaccumulation, bio-sorption, electrostatic attraction, and complexation actively works to reduce toxicity in contaminated agricultural soil caused by Sb. In the end, the exploration of recent advancements in genetics and molecular biology techniques are highlighted, which offers valuable insights into combating Sb toxicity. In conclusion, the findings of this comprehensive review should help develop innovative and useful strategies for minimizing Sb absorption and contamination and thus successfully managing Sb-polluted soil and plants to reduce environmental and public health risks.
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Affiliation(s)
- Fasih Ullah Haider
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; Guangdong Provincial Key Laboratory of Applied Botany, Chinese Academy of Sciences, Guangzhou 510650, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Usman Zulfiqar
- Department of Agronomy, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | - Noor Ul Ain
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China
| | - Tariq Mehmood
- Leibniz Institute for Agricultural Engineering and Bioeconomy (ATB), Department Sensors and Modeling, Max-Eyth-Allee 100, 14469 Potsdam, Germany
| | - Umed Ali
- Department of Agriculture, Mir Chakar Khan Rind University, Sibi 82000, Balochistan, Pakistan
| | - Luis Carlos Ramos Aguila
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; Guangdong Provincial Key Laboratory of Applied Botany, Chinese Academy of Sciences, Guangzhou 510650, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Yuelin Li
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; Guangdong Provincial Key Laboratory of Applied Botany, Chinese Academy of Sciences, Guangzhou 510650, China; University of Chinese Academy of Sciences, Beijing 100039, China.
| | - Kadambot H M Siddique
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6001, Australia
| | - Muhammad Farooq
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6001, Australia; Department of Plant Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, Al-Khoud 123, Oman.
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Pinto A, da Silva DC, Cardoso A, Fernandes F, Soares C, Valentão P, Fidalgo F, Teixeira J. Progesterone and brassinosteroids synergistically enhance progesterone removal and antioxidant capacity of Solanum nigrum L. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2024; 30:1353-1362. [PMID: 39184558 PMCID: PMC11341505 DOI: 10.1007/s12298-024-01496-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 07/15/2024] [Accepted: 07/24/2024] [Indexed: 08/27/2024]
Abstract
Progesterone (PROG) has been detected at various concentrations in the environment and has adverse effects on humans and wildlife. This work evaluated the impact of PROG in Solanum nigrum L. plants, its removal capacity, and how 2,4-epibrassinolide (24-EBL) affects this process. Three treatments were used: (1) control, (2) irrigation with 0.8 µM PROG, and (3) treatment with 0.8 µM PROG after a pre-treatment with a foliar application of 1 µM 2,4-EBL (PROG/24EBL). After 20 days of treatment, no PROG was detected in the nutrient solution or plant tissues, indicating that the PROG was removed and metabolized. Lipid peroxidation significantly decreased in response to PROG in shoots and roots, and this effect was even more significant for both organs of the PROG/24EBL plants. Additionally, both treatments in both organs showed a decrease in H2O2 levels, and both steroid hormones increased the plants' antioxidant system at both the biochemical and gene expression levels. In conclusion, S. nigrum can swiftly remove PROG without affecting its growth, and the use of 24-EBL synergistically decreases oxidative damage by increasing the activity of the antioxidant system and enhancing plant PROG removal ability.
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Affiliation(s)
- Ana Pinto
- GreenUPorto – Centro de Investigação em Produção Agroalimentar Sustentável – Inov4Agro & Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Porto, Portugal
| | - Daniela Correia da Silva
- REQUIMTE/Laboratório de Farmacognosia, Departamento de Química, Faculdade de Farmácia, Universidade do Porto, Porto, Portugal
| | - Ana Cardoso
- GreenUPorto – Centro de Investigação em Produção Agroalimentar Sustentável – Inov4Agro & Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Porto, Portugal
| | - Fátima Fernandes
- REQUIMTE/Laboratório de Farmacognosia, Departamento de Química, Faculdade de Farmácia, Universidade do Porto, Porto, Portugal
| | - Cristiano Soares
- GreenUPorto – Centro de Investigação em Produção Agroalimentar Sustentável – Inov4Agro & Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Porto, Portugal
| | - Patrícia Valentão
- REQUIMTE/Laboratório de Farmacognosia, Departamento de Química, Faculdade de Farmácia, Universidade do Porto, Porto, Portugal
| | - Fernanda Fidalgo
- GreenUPorto – Centro de Investigação em Produção Agroalimentar Sustentável – Inov4Agro & Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Porto, Portugal
| | - Jorge Teixeira
- GreenUPorto – Centro de Investigação em Produção Agroalimentar Sustentável – Inov4Agro & Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Porto, Portugal
- Dep° de Biologia, Faculdade de Ciências da Universidade do Porto, Edifício FC4. Rua do Campo Alegre, S/N. 4169-007, Porto, Portugal
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Singh M, Chadha P. Assessment of synthetic food dye erythrosine induced cytotoxicity, genotoxicity, biochemical and molecular alterations in Allium cepa root meristematic cells: insights from in silico study. Toxicol Res (Camb) 2024; 13:tfae126. [PMID: 39132191 PMCID: PMC11311706 DOI: 10.1093/toxres/tfae126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 07/25/2024] [Accepted: 08/03/2024] [Indexed: 08/13/2024] Open
Abstract
Background Synthetic food dyes are being exponentially used in food products and scarce studies regarding their toxicities and safety raise concern. Erythrosine is one of the synthetic food dyes being used in jams, fig, pineapple marmalades, dairy products, soft drinks, pickles, relishes, smoked fish, cheese, ketchup, maraschino cherries and a variety of other foods. Methodology In this study the cyto-genotoxic effect of erythrosine was evaluated, using root meristematic cells of Allium cepa for the cellular and molecular alternations at concentrations 0.1, 0.25, 0.5 and 1 mg/mL. Results The results revealed a significant decrease of 57.81% in the mitotic index after 96 h at the 0.1 mg/mL concentration. In biochemical analysis, the malondialdehyde content increased significantly (5.47-fold), while proline content, catalase activity and superoxide dismutase activity decreased gradually in a concentration-dependent manner showing a maximum decrease of 78.11%, 64.68% and 61.73% respectively at the highest concentration after 96 h duration. The comet assay revealed increased DNA damage with increasing concentration and attenuated total reflectance- Fourier transform infrared spectroscopy (ATR-FTIR) analysis showed significant alterations in biomolecules as indicated by multivariate analysis, i.e. Principal Component Analysis (PCA). Furthermore, molecular docking demonstrated a strong binding energy (Gbest = -11.46 kcal/mol) and an inhibition constant (Ki) of 3.96 nM between erythrosine and the DNA minor groove. Conclusion The present study's findings revealed the cytotoxic and genotoxic potential of erythrosine on A. cepa root cells. Further, the study also proposed the usefulness of A. cepa as a model system for studying the toxicity of food additives.
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Affiliation(s)
- Mandeep Singh
- Department of Zoology, Guru Nanak Dev University, Amritsar, Punjab, 143005, India
| | - Pooja Chadha
- Department of Zoology, Guru Nanak Dev University, Amritsar, Punjab, 143005, India
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40
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El Yamani M, Cordovilla MDP. Tolerance Mechanisms of Olive Tree ( Olea europaea) under Saline Conditions. PLANTS (BASEL, SWITZERLAND) 2024; 13:2094. [PMID: 39124213 PMCID: PMC11314443 DOI: 10.3390/plants13152094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2024] [Revised: 07/19/2024] [Accepted: 07/20/2024] [Indexed: 08/12/2024]
Abstract
The olive tree (Olea europaea L.) is an evergreen tree that occupies 19% of the woody crop area and is cultivated in 67 countries on five continents. The largest olive production region is concentrated in the Mediterranean basin, where the olive tree has had an enormous economic, cultural, and environmental impact since the 7th century BC. In the Mediterranean region, salinity stands out as one of the main abiotic stress factors significantly affecting agricultural production. Moreover, climate change is expected to lead to increased salinization in this region, threatening olive productivity. Salt stress causes combined damage by osmotic stress and ionic toxicity, restricting olive growth and interfering with multiple metabolic processes. A large variability in salinity tolerance among olive cultivars has been described. This paper aims to synthesize information from the published literature on olive adaptations to salt stress and its importance in salinity tolerance. The morphological, physiological, biochemical, and molecular mechanisms of olive tolerance to salt stress are reviewed.
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Affiliation(s)
- Mohamed El Yamani
- Laboratory of Applied Sciences for the Environment and Sustainable Development, Essaouira School of Technology, Cadi Ayyad University, B.P. 383, Essaouira 40000, Morocco
| | - María del Pilar Cordovilla
- Center for Advances Studies in Olive Grove and Olive Oils, Faculty of Experimental Science, University of Jaén, Paraje Las Lagunillas, E-23071 Jaén, Spain
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41
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Wang YH, Ye X, Zhao BY, Wang WJ, Zhou ZF, Zhang XQ, Du J, Song JL, Huang XL, Ouyang KX, Zhong TX, Liao FX. Comprehensive analysis of B3 family genes in pearl millet ( Pennisetum glaucum) and the negative regulator role of PgRAV-04 in drought tolerance. FRONTIERS IN PLANT SCIENCE 2024; 15:1400301. [PMID: 39135652 PMCID: PMC11317251 DOI: 10.3389/fpls.2024.1400301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Accepted: 07/08/2024] [Indexed: 08/15/2024]
Abstract
Introduction Members of the plant-specific B3 transcription factor superfamily play crucial roles in various plant growth and developmental processes. Despite numerous valuable studies on B3 genes in other species, little is known about the B3 superfamily in pearl millet. Methods and results Here, through comparative genomic analysis, we identified 70 B3 proteins in pearl millet and categorized them into four subfamilies based on phylogenetic affiliations: ARF, RAV, LAV, and REM. We also mapped the chromosomal locations of these proteins and analyzed their gene structures, conserved motifs, and gene duplication events, providing new insights into their potential functional interactions. Using transcriptomic sequencing and real-time quantitative PCR, we determined that most PgB3 genes exhibit upregulated expression under drought and high-temperature stresses, indicating their involvement in stress response regulation. To delve deeper into the abiotic stress roles of the B3 family, we focused on a specific gene within the RAV subfamily, PgRAV-04, cloning it and overexpressing it in tobacco. PgRAV-04 overexpression led to increased drought sensitivity in the transgenic plants due to decreased proline levels and peroxidase activity. Discussion This study not only adds to the existing body of knowledge on the B3 family's characteristics but also advances our functional understanding of the PgB3 genes in pearl millet, reinforcing the significance of these factors in stress adaptation mechanisms.
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Affiliation(s)
- Yin-Hua Wang
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- Guangdong Engineering Research Center for Grassland Science, Guangzhou, China
| | - Xing Ye
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- Guangdong Engineering Research Center for Grassland Science, Guangzhou, China
| | - Bi-Yao Zhao
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- Guangdong Engineering Research Center for Grassland Science, Guangzhou, China
| | - Wen-Jing Wang
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Zheng-Feng Zhou
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Xiang-Qian Zhang
- College of Food Science and Engineering, Foshan University, Foshan, China
| | - Juan Du
- Institute for Agricultural Biosciences, Oklahoma State University, Ardmore, OK, United States
| | - Jian-Ling Song
- College of biology and chemistry, Minzu Normal University of Xingyi, Xingyi, China
| | - Xiao-Ling Huang
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Kun-Xi Ouyang
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Tian-Xiu Zhong
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- Guangdong Engineering Research Center for Grassland Science, Guangzhou, China
| | - Fei-Xiong Liao
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
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Song J, Yang J, Jeong BR. Synergistic Effects of Silicon and Aspartic Acid on the Alleviation of Salt Stress in Celery ( Apium graveliens L.) "Si Ji Xiao Xiang Qin". PLANTS (BASEL, SWITZERLAND) 2024; 13:2072. [PMID: 39124189 PMCID: PMC11314570 DOI: 10.3390/plants13152072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 07/24/2024] [Accepted: 07/25/2024] [Indexed: 08/12/2024]
Abstract
Salinity is one of the primary abiotic stresses that seriously hampers plant quality and productivity. It is feasible to reduce or reverse the negative effects of salt through the supplementation of silicon (Si) and aspartic acid (Asp). However, the question of how exogenous Si and Asp induce salt tolerance in celery remains incipient. Thus, this study was performed to determine the synergistic effects of Si and Asp on the alleviation of salt stress in celery. To this end, the celery plants were cultivated in a controlled regime (light for 14 h at 22 °C; darkness for 10 h at 16 °C) and treated with one of five treatments (CK, 100 mM NaCl, 100 mM NaCl + 75 mg/L Si, 100 mM NaCl + 100 mg/L Asp, and 100 mM NaCl + 75 mg/L Si + 100 mg/L Asp). Results showed that solely NaCl-treated celery plants developed salt toxicity, as characterized by decreased growth, declined photosynthetic ability, disturbed nutritious status and internal ion balance, and a boosted antioxidant defense system (Improved antioxidant enzymes and reduced ROS accumulation). In contrast, these adverse effects of NaCl were ameliorated by the additions of Si and Asp, regardless of Si, Asp, or both. Moreover, the mitigatory impacts of the co-application of Si and Asp on salt stress were more pronounced compared to when one of them was solely applied. Collectively, exogenous Si and Asp alleviate the degree of salt stress and thereby improve the salt tolerance of celery.
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Affiliation(s)
- Jinnan Song
- Shandong Provincial University Laboratory for Protected Horticulture, Weifang University of Science and Technology, Shouguang 262700, China;
| | - Jingli Yang
- Shandong Provincial University Laboratory for Protected Horticulture, Weifang University of Science and Technology, Shouguang 262700, China;
| | - Byoung Ryong Jeong
- Division of Horticultural Science, College of Agriculture and Life Sciences, Gyeongsang National University, Jinju 52828, Republic of Korea
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Huang R, Dai M, Jiang S, Guo Z, Shi H. Chloroplast-localized PvBASS2 regulates salt tolerance in the C4 plant seashore paspalum. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024. [PMID: 39058753 DOI: 10.1111/tpj.16949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Revised: 07/03/2024] [Accepted: 07/16/2024] [Indexed: 07/28/2024]
Abstract
BILE ACID SODIUM SYMPORTER FAMILY PROTEIN 2 (BASS2) is localized within chloroplast membranes, facilitating the translocation of pyruvate and Na+ from the cytosol to the plastid, where pyruvate supports isopentenyl diphosphate (IPP) synthesis via the methylerythritol phosphate pathway in C3 plants. Nevertheless, the biological function of BASS2 in C4 plants has not been well defined. This study unveils a previously unidentified role of PvBASS2 in Na+ and pyruvate transport in seashore paspalum (Paspalum vaginatum), a halophytic C4 grass, indicating a specific cellular function within this plant species. Data showed that overexpression of PvBASS2 in seashore paspalum attenuated salt tolerance, whereas its RNAi lines exhibited enhanced salt resistance compared to wild-type plants, suggesting a negative regulatory role of PvBASS2 in seashore paspalum salt tolerance. The constitutive overexpression of PvBASS2 was also found to reduce salt tolerance in Arabidopsis. Further study revealed that PvBASS2 negatively regulates seashore paspalum salt tolerance, possibly due to elevated Na+/K+ ratio, disrupted chloroplast structure, and reduced photosynthetic efficiency following exposure to salinity. Importantly, our subsequent investigations revealed that modulation of PvBASS2 expression in seashore paspalum influenced carbon dioxide assimilation, intermediary metabolites of the tricarboxylic acid cycle, and enzymatic activities under salinity treatment, which in turn led to alterations in free amino acid concentrations. Thus, this study reveals a role for BASS2 in the C4 plant seashore paspalum and enhances our comprehension of salt stress responses in C4 plants.
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Affiliation(s)
- Risheng Huang
- Key Laboratory of State Forestry and Grassland Administration on Grass Germplasm Resources Innovation and Utilization in the Middle and Lower Reaches of the Yangtze River, College of Grassland Science, Nanjing Agricultural University, Nanjing, 210095, China
| | - Mengtong Dai
- Key Laboratory of State Forestry and Grassland Administration on Grass Germplasm Resources Innovation and Utilization in the Middle and Lower Reaches of the Yangtze River, College of Grassland Science, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shouzhen Jiang
- Key Laboratory of State Forestry and Grassland Administration on Grass Germplasm Resources Innovation and Utilization in the Middle and Lower Reaches of the Yangtze River, College of Grassland Science, Nanjing Agricultural University, Nanjing, 210095, China
| | - Zhenfei Guo
- Key Laboratory of State Forestry and Grassland Administration on Grass Germplasm Resources Innovation and Utilization in the Middle and Lower Reaches of the Yangtze River, College of Grassland Science, Nanjing Agricultural University, Nanjing, 210095, China
| | - Haifan Shi
- Key Laboratory of State Forestry and Grassland Administration on Grass Germplasm Resources Innovation and Utilization in the Middle and Lower Reaches of the Yangtze River, College of Grassland Science, Nanjing Agricultural University, Nanjing, 210095, China
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Mishra A, Chakraborty S, Jaiswal TP, Bhattacharjee S, Kesarwani S, Mishra AK, Singh SS. Untangling the adaptive strategies of thermophilic bacterium Anoxybacillus rupiensis TPH1 under low temperature. Extremophiles 2024; 28:31. [PMID: 39020126 DOI: 10.1007/s00792-024-01346-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Accepted: 06/10/2024] [Indexed: 07/19/2024]
Abstract
The present study investigates the low temperature tolerance strategies of thermophilic bacterium Anoxybacillus rupiensis TPH1, which grows optimally at 55 °C , by subjecting it to a temperature down-shift of 10 °C (45 °C) for 4 and 6 h followed by studying its growth, morphophysiological, molecular and proteomic responses. Results suggested that although TPH1 experienced increased growth inhibition, ROS production, protein oxidation and membrane disruption after 4 h of incubation at 45 °C yet maintained its DNA integrity and cellular structure through the increased expression of DNA damage repair and cell envelop synthesizing proteins and also progressively alleviated growth inhibition by 20% within two hours i.e., 6 h, by inducing the expression of antioxidative enzymes, production of unsaturated fatty acids, capsular and released exopolysaccharides and forming biofilm along with chemotaxis proteins. Conclusively, the adaptation of Anoxybacillus rupiensis TPH1 to lower temperature is mainly mediated by the synthesis of large numbers of defense proteins and exopolysaccharide rich biofilm formation.
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Affiliation(s)
- Aditi Mishra
- Laboratory of Cyanobacterial Systematics and Stress Biology, Department of Botany, Banaras Hindu University, Varanasi, India
| | - Sindhunath Chakraborty
- Laboratory of Microbial Genetics, Department of Botany, Banaras Hindu University, Varanasi, India
| | - Tameshwar Prasad Jaiswal
- Laboratory of Cyanobacterial Systematics and Stress Biology, Department of Botany, Banaras Hindu University, Varanasi, India
| | - Samujjal Bhattacharjee
- Laboratory of Microbial Genetics, Department of Botany, Banaras Hindu University, Varanasi, India
| | - Shreya Kesarwani
- Laboratory of Cyanobacterial Systematics and Stress Biology, Department of Botany, Banaras Hindu University, Varanasi, India
| | - Arun Kumar Mishra
- Laboratory of Microbial Genetics, Department of Botany, Banaras Hindu University, Varanasi, India
| | - Satya Shila Singh
- Laboratory of Cyanobacterial Systematics and Stress Biology, Department of Botany, Banaras Hindu University, Varanasi, India.
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Kulasza M, Sielska A, Szenejko M, Soroka M, Skuza L. Effects of copper, and aluminium in ionic, and nanoparticulate form on growth rate and gene expression of Setaria italica seedlings. Sci Rep 2024; 14:15897. [PMID: 38987627 PMCID: PMC11237061 DOI: 10.1038/s41598-024-66921-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 07/05/2024] [Indexed: 07/12/2024] Open
Abstract
This study aims to determine the effects of copper, copper oxide nanoparticles, aluminium, and aluminium oxide nanoparticles on the growth rate and expression of ACT-1, CDPK, LIP, NFC, P5CR, P5CS, GR, and SiZIP1 genes in five days old seedling of Setaria italica ssp. maxima, cultivated in hydroponic culture. Depending on their concentration (ranging from 0.1 to 1.8 mg L-1), all tested substances had both stimulating and inhibiting effects on the growth rate of the seedlings. Copper and copper oxide-NPs had generally a stimulating effect whereas aluminium and aluminium oxide-NPs at first had a positive effect but in higher concentrations they inhibited the growth. Treating the seedlings with 0.4 mg L-1 of each tested toxicant was mostly stimulating to the expression of the genes and reduced the differences between the transcript levels of the coleoptiles and roots. Increasing concentrations of the tested substances had both stimulating and inhibiting effects on the expression levels of the genes. The highest expression levels were usually noted at concentrations between 0.4 and 1.0 mg/L of each metal and metal nanoparticle, except for SiZIP1, which had the highest transcript amount at 1.6 mg L-1 of Cu2+ and at 0.1-0.8 mg L-1 of CuO-NPs, and LIP and GR from the seedling treated with Al2O3-NPs at concentrations of 0.1 and 1.6 mg L-1, respectively.
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Affiliation(s)
- Mateusz Kulasza
- Institute of Biology, University of Szczecin, 71415, Szczecin, Poland.
| | - Anna Sielska
- Institute of Biology, University of Szczecin, 71415, Szczecin, Poland.
- Centre for Molecular Biology and Biotechnology, Institute of Biology, University of Szczecin, 71415, Szczecin, Poland.
- Doctoral School, University of Szczecin, 70383, Szczecin, Poland.
| | - Magdalena Szenejko
- Institute of Marine and Environmental Sciences, University of Szczecin, 71412, Szczecin, Poland
- Centre for Molecular Biology and Biotechnology, Institute of Biology, University of Szczecin, 71415, Szczecin, Poland
| | - Marianna Soroka
- Institute of Biology, University of Szczecin, 71415, Szczecin, Poland
- Department of Genetics and Genomics, Institute of Biology, University of Szczecin, 71412, Szczecin, Poland
| | - Lidia Skuza
- Institute of Biology, University of Szczecin, 71415, Szczecin, Poland
- Centre for Molecular Biology and Biotechnology, Institute of Biology, University of Szczecin, 71415, Szczecin, Poland
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Ngwenya SP, Moloi SJ, Shargie NG, Brown AP, Chivasa S, Ngara R. Regulation of Proline Accumulation and Protein Secretion in Sorghum under Combined Osmotic and Heat Stress. PLANTS (BASEL, SWITZERLAND) 2024; 13:1874. [PMID: 38999714 PMCID: PMC11244414 DOI: 10.3390/plants13131874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2024] [Revised: 06/19/2024] [Accepted: 06/26/2024] [Indexed: 07/14/2024]
Abstract
Plants reprogramme their proteome to alter cellular metabolism for effective stress adaptation. Intracellular proteomic responses have been extensively studied, and the extracellular matrix stands as a key hub where peptide signals are generated/processed to trigger critical adaptive signal transduction cascades inaugurated at the cell surface. Therefore, it is important to study the plant extracellular proteome to understand its role in plant development and stress response. This study examined changes in the soluble extracellular sub-proteome of sorghum cell cultures exposed to a combination of sorbitol-induced osmotic stress and heat at 40 °C. The combined stress significantly reduced metabolic activity and altered protein secretion. While cells treated with osmotic stress alone had elevated proline content, the osmoprotectant in the combined treatment remained unchanged, confirming that sorghum cells exposed to combined stress utilise adaptive processes distinct from those invoked by the single stresses applied separately. Reactive oxygen species (ROS)-metabolising proteins and proteases dominated differentially expressed proteins identified in cells subjected to combined stress. ROS-generating peroxidases were suppressed, while ROS-degrading proteins were upregulated for protection from oxidative damage. Overall, our study provides protein candidates that could be used to develop crops better suited for an increasingly hot and dry climate.
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Affiliation(s)
- Samkelisiwe P Ngwenya
- Department of Plant Sciences, University of the Free State, Qwaqwa Campus, P. Bag X13, Phuthaditjhaba 9866, South Africa
| | - Sellwane J Moloi
- Department of Plant Sciences, University of the Free State, Qwaqwa Campus, P. Bag X13, Phuthaditjhaba 9866, South Africa
| | - Nemera G Shargie
- Agricultural Research Council-Grain Crops Institute, P. Bag X1251, Potchefstroom 2520, South Africa
| | - Adrian P Brown
- Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK
| | - Stephen Chivasa
- Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK
| | - Rudo Ngara
- Department of Plant Sciences, University of the Free State, Qwaqwa Campus, P. Bag X13, Phuthaditjhaba 9866, South Africa
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Srivastava S, Bhattacharjee A, Dubey S, Sharma S. Bacterial exopolysaccharide amendment improves the shelf life and functional efficacy of bioinoculant under salinity stress. J Appl Microbiol 2024; 135:lxae166. [PMID: 38960398 DOI: 10.1093/jambio/lxae166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 06/20/2024] [Accepted: 07/02/2024] [Indexed: 07/05/2024]
Abstract
AIM Bacterial exopolysaccharides (EPS) possess numerous properties beneficial for the growth of microbes and plants under hostile conditions. The study aimed to develop a bioformulation with bacterial EPS to enhance the bioinoculant's shelf life and functional efficacy under salinity stress. METHODS AND RESULTS High EPS-producing and salt-tolerant bacterial strain (Bacillus haynessi SD2) exhibiting auxin-production, phosphate-solubilization, and biofilm-forming ability, was selected. EPS-based bioformulation of SD2 improved the growth of three legumes under salt stress, from which pigeonpea was selected for further experiments. SD2 improved the growth and lowered the accumulation of stress markers in plants under salt stress. Bioformulations with varying EPS concentrations (1% and 2%) were stored for 6 months at 4°C, 30°C, and 37°C to assess their shelf life and functional efficacy. The shelf life and efficacy of EPS-based bioformulation were sustained even after 6 months of storage at high temperature, enhancing pigeonpea growth under stress in both control and natural conditions. However, the efficacy of non EPS-based bioformulation declined following four months of storage. The bioformulation (with 1% EPS) modulated bacterial abundance in the plant's rhizosphere under stress conditions. CONCLUSION The study brings forth a new strategy for developing next-generation bioformulations with higher shelf life and efficacy for salinity stress management in pigeonpea.
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Affiliation(s)
- Sonal Srivastava
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi 110016, India
| | - Annapurna Bhattacharjee
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi 110016, India
| | - Shubham Dubey
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi 110016, India
| | - Shilpi Sharma
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi 110016, India
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Shafi Z, Shahid M, AlGarawi AM, Zeyad MT, Marey SA, Hatamleh AA, Wang S, Singh UB. The Exogenous Application of 24-Epibrassinolide (24-EBL) Increases the Cd and Pb Resilience in Zea mays (L.) by Regulating the Growth and Physiological Mechanism. Appl Biochem Biotechnol 2024; 196:3949-3973. [PMID: 37792177 DOI: 10.1007/s12010-023-04730-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/15/2023] [Indexed: 10/05/2023]
Abstract
Heavy metals (HMs) at a concentration above the threshold level act as environmental pollutants and very often threaten the agricultural productivity globally. Finding affordable and environmentally sustainable deliverables to address this issue is therefore a top focus. Phytohormones alleviate the HMs-induced toxicity and positively influence the plant growth. Considering the importance of phytohormones, the present study aimed to assess the effect of 24-epibrassinolide (24-EBL; 10 µM) as seed soaking treatment on growth performance of Zea mays (L.) contaminated separately with increasing concentrations (50-400 mg.kg-1) of lead (Pb) and cadmium (Cd). With increasing metal concentrations, growth and plant biometric criteria were reduced. For instance, Cd at 400 mg.kg-1 soil reduced the germination efficiency (56%), root (77%) and shoot (69%) dry weight, total chlorophyll (64%), and carotenoid content (45%). Contrarily, both HMs caused increase in stress biomarkers and antioxidant enzymes in seedling. However, exogenous administration of 24-EBL significantly enhanced the growth attributes, photosynthetic pigments, proline, MDA, and antioxidant enzyme activity while reducing the harmful effects of HMs stress on Z. mays. For instance, 24-EBL (10 µM) improved the germination percentage, root biomass, chl a, chl b, total chlorophyll, and carotenoid content by 16, 21, 17, 34, 18, and 15%, respectively, in 50 mg.Pb.kg-1 soil-treated Z. mays plants. Furthermore, the amounts of proline, MDA, and antioxidant enzymes in foliage of Z. mays were interestingly and dramatically lowered by 24-EBL application. Uptake of metals in plant organs was significantly reduced when 24-EBL was applied to Pb- and Cd-treated Z. mays. The recent findings help us better understand how 24-EBL regulates growth and development of Z. mays as well as how it boosts HMs' resilience, which could increase the possibility of employing 24-EBL to increase Z. mays productivity. Thus, the present findings confirmed the potentiality of pre-soaking the seed in 24-EBL solution that neutralizes the toxic effects of heavy metals in Z. mays plants. Therefore, it is suggested that applying phytohormones including 24-EBL in removal of heavy metal stress in plants is the best possible solution in sustainable agriculture.
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Affiliation(s)
- Zaryab Shafi
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-NBAIM, Kushmaur, Mau, U.P, India
| | - Mohammad Shahid
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-NBAIM, Kushmaur, Mau, U.P, India.
| | - Amal Mohamed AlGarawi
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, 11451, Riyadh, Saudi Arabia
| | - Mohammad Tarique Zeyad
- Department of Agricultural Microbiology, Faculty of Agriculture Sciences, Aligarh Muslim University (A.M.U), Aligarh, UP-20202, India
| | - Samy A Marey
- King Saud University, 11451, Riyadh, Saudi Arabia
| | - Ashraf Atef Hatamleh
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, 11451, Riyadh, Saudi Arabia
| | - Shifa Wang
- School of Electronic and Information Engineering, Chongqing Three Gorges University, Chongqing, 404000, Wanzhou, China
| | - Udai B Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-NBAIM, Kushmaur, Mau, U.P, India
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Li L, Li J, Wang X, Ullah S, Lin S. Reponses of morphological and biochemical traits of bamboo trees under elevated atmospheric O 3 enrichment. ENVIRONMENTAL RESEARCH 2024; 252:119069. [PMID: 38735376 DOI: 10.1016/j.envres.2024.119069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2024] [Revised: 05/01/2024] [Accepted: 05/02/2024] [Indexed: 05/14/2024]
Abstract
Dwarf bamboo (Indocalamus decorus) is an O3-tolerant plant species. To identify the possible mechanism and response of leaf morphological, antioxidant, and anatomical characteristics to elevated atmospheric O3 (EO3) concentrations, we exposed three-year-old I. decorus seedlings to three O3 levels (low O3-LO: ambient air; medium O3-MO: Ambient air+70 ppb high O3-HO: Ambient air+140 ppb O3) over a growing season using open-top chambers. Leaf shape and stomatal characteristics, and leaf microscopic structure of I. decorus were examined. The results indicated that 1) the stomata O3 flux (Fst) of HO decreased more rapidly under EO3 as the exposure time increased. The foliar O3 injury of HO and MO occurred when AOT40 was 26.62 ppm h and 33.20 ppm h, respectively, 2) under EO3, leaf number, leaf mass per area, leaf area, and stomata length/width all decreased, while leaf thickness, stomatal density, width, and area increased compared to the control, 3) MDA and total soluble protein contents all showed significantly increase under HO (36.57% and 32.77%) and MO(31.91% and 19.52%) while proline contents only increased under HO(33.27%). 4) MO and HO increased bulliform cells numbers in the leaves by 6.28% and 23.01%, respectively. HO reduced the transverse area of bulliform cells by 13.73%, while MO treatments had no effect, and 5) the number of fusoid cells interspace, the transverse area of fusoid cells interspace, and mesophyll thickness of HO significantly increased by 11.16%, 28.58%, and 13.42%, respectively. In conclusion, I. decorus exhibits strong O3 tolerance characteristics, which stem from adaptions in the leaf's morphological, structural, antioxidant, and anatomical features. One critical attribute was the enlargement of the bulliform cell transverse area and the transverse area of fusoid cells interspace that drove this resistance to O3. Local bamboo species with high resistance to O3 pollution thus need to be promoted for sustained productivity and ecosystem services in areas with high O3 pollution.
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Affiliation(s)
- Li Li
- Co-Innovation Center for Sustainable Forestry in Southern China, Bamboo Research Institute, Nanjing Forestry University, Nanjing, Jiangsu 210037, China.
| | - Jinling Li
- Co-Innovation Center for Sustainable Forestry in Southern China, Bamboo Research Institute, Nanjing Forestry University, Nanjing, Jiangsu 210037, China; Guangxi Eco-engineering Vocational and Technical College, Liuzhou, Guangxi, China
| | - Xiaoke Wang
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Sami Ullah
- School of Geography, Earth and Environmental Sciences & Birmingham Institute of Forest Research, University of Birmingham, UK.
| | - Shuyan Lin
- Co-Innovation Center for Sustainable Forestry in Southern China, Bamboo Research Institute, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
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50
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Bonetto M, Cofré N, Calvo F, Silvente S. Effects of arbuscular mycorrhizal fungi in the rhizosphere of two olive ( Olea europaea) varieties Arbequina and Barnea under water deficit conditions. FUNCTIONAL PLANT BIOLOGY : FPB 2024; 51:FP24108. [PMID: 39008621 DOI: 10.1071/fp24108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Accepted: 06/25/2024] [Indexed: 07/17/2024]
Abstract
One strategy to improve olive (Olea europaea ) tree drought tolerance is through the symbiosis of arbuscular mycorrhizal fungi (AMF), which helps alleviate water deficit through a combination of morphophysiological effects. Cuttings of olive varieties Arbequina (A) and Barnea (B) were grown with (+AMF) or without (-AMF) inoculum in the olive grove rhizosphere soil. One year after establishment, pots were exposed to four different water regimes: (1) control (100% of crop evapotranspiration); (2) short-period drought (20days); (3) long-period drought (25days); and (4) rewatering (R). To evaluate the influence of AMF on tolerance to water stress, stem water potential, stomatal conductance and the biomarkers for water deficit malondialdehyde, proline, soluble sugars, phenols, and flavonoids were evaluated at the end of the irrigation regimes. Stem water potential showed higher values in A(+) and B(+) in all water conditions, and the opposite was true for stomatal conductance. For proline and soluble sugars, the stem water potential trend is repeated with some exceptions. AMF inoculum spore communities from A(+ and -) and B(+ and -) were characterised at the morphospecies level in terms of richness and abundance. Certain morphospecies were identified as potential drought indicators. These results highlight that the benefits of symbiotic relationships between olive and native AMF can help to mitigate the effects of abiotic stress in soils affected by drought.
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Affiliation(s)
- Mariana Bonetto
- Instituto de Agricultura Sostenible en el Oasis (IASO), Universidad Nacional de Chilecito (UNdeC), La Rioja, Argentina
| | - Noelia Cofré
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET, FCEFyN, Universidad Nacional de Córdoba, Córdoba, Argentina
| | - Franco Calvo
- Instituto de Agricultura Sostenible en el Oasis (IASO), Universidad Nacional de Chilecito (UNdeC), La Rioja, Argentina
| | - Sonia Silvente
- Instituto de Ambiente de Montaña y Regiones Áridas (IAMRA), Universidad Nacional de Chilecito (UNdeC), La Rioja, Argentina
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