Modelling stomatal conductance in response to environmental factors

Effects of drought and moisture stress on the growth and ecophysiological traits of Schima superba seedlings

Changes in rainfall patterns are important environmental factors affecting plant growth, especially when larger precipitation events and prolonged drought periods occur in subtropical regions. There are many studies on how drought reduces plant biomass through drought-sensitive functional traits, but how excess water affects plant growth and ecophysiology is still poorly understood. Therefore, a greenhouse experiment was conducted on Schima superba (Theaceae), a dominant tree species in subtropical forests and commonly used in forestry, in a closed chamber under control (25% soil water content (SWC) as in local forests), drought stress (D, 15% SWC) and moisture stress (W, 35% SWC). Plant growth and ecophysiological traits related to morphology, leaf gas exchange, water potential and structural traits were measured. Compared to control, S. suberba under dry conditions significantly decreased its aboveground biomass, photosynthetic rate (A), leaf water potential and nitrogen use efficiency, but increased intrinsic water use efficiency, root to shoot ratio and specific root length. S. superba under wet conditions also significantly decreased its total biomass, aboveground biomass and specific root length, while W had no effect on A and leaf water potential. Our results indicate that S. superba shows a decrease in carbon gain under drought stress, but less response under wet conditions. This emphasizes the need to consider the strength and frequency of rainfall pattern changes in future studies because rainfall may either alleviate or intensify the effects of drought stress depending on the moisture level, thus suitable water conditions is important for better management of this tree species in subtropical China.

The interplay of short-term mesophyll and stomatal conductance responses under variable environmental conditions

Understanding the short-term responses of mesophyll conductance (gm) and stomatal conductance (gsc) to environmental changes remains a challenging yet central aspect of plant physiology. This review synthesises our current knowledge of these short-term responses, which underpin CO2 diffusion within leaves. Recent methodological advances in measuring gm using online isotopic discrimination and chlorophyll fluorescence have improved our confidence in detecting short-term gm responses, but results need to be carefully evaluated. Environmental factors like vapour pressure deficit and CO2 concentration indirectly impact gm through gsc changes, highlighting some of the complex interactions between the two parameters. Evidence suggests that short-term responses of gm are not, or at least not fully, mechanistically linked to changes in gsc, cautioning against using gsc as a reliable proxy for gm. The overarching challenge lies in unravelling the mechanistic basis of short-term gm responses, which will contribute to the development of accurate models bridging laboratory insights with broader ecological implications. Addressing these gaps in understanding is crucial for refining predictions of gm behaviour under changing environmental conditions.

Abscisic acid increase correlates with the soil water threshold of transpiration decline during drought

By regulating carbon uptake and water loss by plants, stomata are not only responsible for productivity but also survival during drought. The timing of the onset of stomatal closure is crucial for preventing excessive water loss during drought, but is poorly explained by plant hydraulics alone and what triggers stomatal closure remains disputed. We investigated whether the hormone abscisic acid (ABA) was this trigger in a highly embolism-resistant tree species Umbellularia californica. We tracked leaf ABA levels, determined the leaf water potential and gravimetric soil water content (gSWC) thresholds for stomatal closure and transpiration decline during a progressive drought. We found that U. californica plants have a peaking-type ABA dynamic, where ABA levels rise early in drought and then decline under prolonged drought conditions. The early increase in ABA levels correlated with the closing of stomata and reduced transpiration. Furthermore, we found that transpiration declined before any large decreases in predawn plant water status and could best be explained by transient drops in midday water potentials triggering increased ABA levels. Our results indicate that ABA-mediated stomatal regulation may be an integral mechanism for reducing transpiration during drought before major drops in bulk soil and plant water status.

Precision phenotyping of a barley diversity set reveals distinct drought response strategies

Plants exhibit an array of drought responses and adaptations, where the trade-off between water loss and CO2 uptake for growth is mediated by regulation of stomatal aperture in response to soil water content (SWC), among other factors. For crop yield stability, the question is how drought timing and response patterns relate to post-drought growth resilience and vigor. We earlier identified, in a few reference varieties of barley that differed by the SWC at which transpiration was curtailed, two divergent water use strategies: water-saving ("isohydric") and water-spending ("anisohydric"). We proposed that an isohydric strategy may reduce risk from spring droughts in climates where the probability of precipitation increases during the growing season, whereas the anisohydric is consistent with environments having terminal droughts, or with those where dry periods are short and not seasonally progressive. Here, we have examined drought response physiology in an 81-line barley (Hordeum vulgare L.) diversity set that spans 20th century European breeding and identified several lines with a third, dynamic strategy. We found a strong positive correlation between vigor and transpiration, the dynamic group being highest for both. However, these lines curtailed daily transpiration at a higher SWC than the isohydric group. While the dynamic lines, particularly cv Hydrogen and Baronesse, were not the most resilient in terms of restoring initial growth rates, their strong initial vigor and high return to initial transpiration rates meant that their growth nevertheless surpassed more resilient lines during recovery from drought. The results will be of use for defining barley physiological ideotypes suited to future climate scenarios.

Practical Considerations and Limitations of Using Leaf and Canopy Temperature Measurements as a Stomatal Conductance Proxy: Sensitivity across Environmental Conditions, Scale, and Sample Size

Stomatal conductance (gs) is a crucial component of plant physiology, as it links plant productivity and water loss through transpiration. Estimating gs indirectly through leaf temperature (Tl) measurement is common for reducing the high labor cost associated with direct gs measurement. However, the relationship between observed Tl and gs can be notably affected by local environmental conditions, canopy structure, measurement scale, sample size, and gs itself. To better understand and quantify the variation in the relationship between Tl measurements to gs, this study analyzed the sensitivity of Tl to gs using a high-resolution three-dimensional model that resolves interactions between microclimate and canopy structure. The model was used to simulate the sensitivity of Tl to gs across different environmental conditions, aggregation scales (point measurement, infrared thermometer, and thermographic image), and sample sizes. Results showed that leaf-level sensitivity of Tl to gs was highest under conditions of high net radiation flux, high vapor pressure deficit, and low boundary layer conductance. The study findings also highlighted the trade-off between measurement scale and sample size to maximize sensitivity. Smaller scale measurements (e.g., thermocouple) provided maximal sensitivity because they allow for exclusion of shaded leaves and the ground, which have low sensitivity. However, large sample sizes (up to 50 to 75) may be needed to differentiate genotypes. Larger-scale measurements (e.g., thermal camera) reduced sample size requirements but include low-sensitivity elements in the measurement. This work provides a means of estimating leaf-level sensitivity and offers quantitative guidance for balancing scale and sample size issues.

Localized measurements of water potential reveal large loss of conductance in living tissues of maize leaves

The water status of the living tissue in leaves between the xylem and stomata (outside xylem zone (OXZ) plays a critical role in plant function and global mass and energy balance but has remained largely inaccessible. We resolve the local water relations of OXZ tissue using a nanogel reporter of water potential (ψ), AquaDust, that enables an in situ, nondestructive measurement of both ψ of xylem and highly localized ψ at the terminus of transpiration in the OXZ. Working in maize (Zea mays L.), these localized measurements reveal gradients in the OXZ that are several folds larger than those based on conventional methods and values of ψ in the mesophyll apoplast well below the macroscopic turgor loss potential. We find a strong loss of hydraulic conductance in both the bundle sheath and the mesophyll with decreasing xylem potential but not with evaporative demand. Our measurements suggest the OXZ plays an active role in regulating the transpiration path, and our methods provide the means to study this phenomenon.

Predicting the canopy conductance to water vapor of grapevines using a biophysical model in a hot and arid climate

Canopy conductance is a crucial factor in modelling plant transpiration and is highly responsive to water stress. The objective of this study is to develop a straightforward method for estimating canopy conductance (gc) in grapevines. To predict gc, this study combines stomatal conductance to water vapor (gsw) measurements from grapevine leaves, scaled to represent the canopy size by the leaf area index (LAI), with atmospheric variables, such as net solar radiation (Rn) and air vapor pressure deficit (VPD). The developed model was then validated by comparing its predictions with gc values calculated using the inverse of the Penman Monteith equation. The proposed model demonstrates its effectiveness in estimating the gc, with the highest root-mean-squared-error (RMSE=1.45x10-4 m.s-1) being lower than the minimum gc measured in the field (gc obs=0.0005 m.s-1). The results of this study reveal the significant influence of both VPD and gsw on grapevine canopy conductance.

Stomatal aperture dynamics coupling mechanically passive and ionically active mechanisms

Stomata are the key nodes linking photosynthesis and transpiration. By regulating the opening degree of stomata, plants successively achieve the balance between water loss and carbon dioxide acquisition. The dynamic behaviour of stomata is an important cornerstone of plant adaptability. Though there have been miscellaneous experimental results on stomata and their constituent cells, the guard cells and the subsidiary cells, current theory of stomata regulation is far from clear and unified. In this work, we develop an integrated model to describe the stomatal dynamics of seed plants based on existing experimental results. The model includes three parts: (1) a passive mechanical model of the stomatal aperture as a bivariate function of the guard-cell turgor and the subsidiary-cell turgor; (2) an active regulation model with a target ion-content in guard cells as a function of their water potential; and (3) a dynamical model for the movement of potassium ions and water content. Our model has been used to reproduce abundant experimental phenomena semi-quantitatively. With accurately measured parameters, our model can also be used to predict stomatal responses to changes of environmental conditions.

Chloroplast Auxin Efflux Mediated by ABCB28 and ABCB29 Fine-Tunes Salt and Drought Stress Responses in Arabidopsis

Photosynthesis is among the first processes negatively affected by environmental cues and its performance directly determines plant cell fitness and ultimately crop yield. Primarily sites of photosynthesis, chloroplasts are unique sites also for the biosynthesis of precursors of the growth regulator auxin and for sensing environmental stress, but their role in intracellular auxin homeostasis, vital for plant growth and survival in changing environments, remains poorly understood. Here, we identified two ATP-binding cassette (ABC) subfamily B transporters, ABCB28 and ABCB29, which export auxin across the chloroplast envelope to the cytosol in a concerted action in vivo. Moreover, we provide evidence for an auxin biosynthesis pathway in Arabidopsis thaliana chloroplasts. The overexpression of ABCB28 and ABCB29 influenced stomatal regulation and resulted in significantly improved water use efficiency and survival rates during salt and drought stresses. Our results suggest that chloroplast auxin production and transport contribute to stomata regulation for conserving water upon salt stress. ABCB28 and ABCB29 integrate photosynthesis and auxin signals and as such hold great potential to improve the adaptation potential of crops to environmental cues.

CO2 mesophyll conductance regulated by light: a review

MAIN CONCLUSION

Light quality and intensity regulate plant mesophyll conductance, which has played an essential role in photosynthesis by controlling leaf structural and biochemical properties. Mesophyll conductance (g_m), a crucial physiological factor influencing the photosynthetic rate of leaves, is used to describe the resistance of CO₂ from the sub-stomatal cavity into the chloroplast up to the carboxylation site. Leaf structural and biochemical components, as well as external environmental factors such as light, temperature, and water, all impact g_m. As an essential factor of plant photosynthesis, light affects plant growth and development and plays a vital role in regulating g_m as well as determining photosynthesis and yield. This review aimed to summarize the mechanisms of g_m response to light. Both structural and biochemical perspectives were combined to reveal the effects of light quality and intensity on the g_m, providing a guide for selecting the optimal conditions for intensifying photosynthesis in plants.

The impact of growth at elevated [CO2] on stomatal anatomy and behavior differs between wheat species and cultivars

The ability of plants to respond to changes in the environment is crucial to their survival and reproductive success. The impact of increasing the atmospheric CO2 concentration (a[CO2]), mediated by behavioral and developmental responses of stomata, on crop performance remains a concern under all climate change scenarios, with potential impacts on future food security. To identify possible beneficial traits that could be exploited for future breeding, phenotypic variation in morphological traits including stomatal size and density, as well as physiological responses and, critically, the effect of growth [CO2] on these traits, was assessed in six wheat relative accessions (including Aegilops tauschii, Triticum turgidum ssp. Dicoccoides, and T. turgidum ssp. dicoccon) and five elite bread wheat T. aestivum cultivars. Exploiting a range of different species and ploidy, we identified key differences in photosynthetic capacity between elite hexaploid wheat and wheat relatives. We also report differences in the speed of stomatal responses which were found to be faster in wheat relatives than in elite cultivars, a trait that could be useful for enhanced photosynthetic carbon gain and water use efficiency. Furthermore, these traits do not all appear to be influenced by elevated [CO2], and determining the underlying genetics will be critical for future breeding programmes.

Response of Maize (Zea mays L.) to Drought under Salinity and Boron Stress in the Atacama Desert

The Lluta valley in northern Chile is a hyper-arid region with annual precipitation lower than 1.1 mm, and high levels of boron (B) from alluvial deposits are present together with other salts that originated from the Cretaceous. Under these abiotic conditions, the 'lluteño' maize (Zea mays L.) is of interest because it has adapted to the Lluta valley with high salinity levels and B excess in the soil and irrigation water. Water and salt stress coincide in heavily irrigated hyper-arid agricultural areas, yet they are usually studied in isolation. We investigated in field conditions the combined effects of drought (22 days with no irrigation) under salinity (ECe: 5.5 mS cm^-1; Na+: 17.8 meq L^-1) and B (21.1 meq L^-1) stress on physiology, growth, yield, and hourly water relations. The results allow to hypothesize that the measurement of the pre-dawn water potential represents the balance between the water potential of the soil and the root. Besides, under drought a significant effect of irrigation and time interaction was observed presenting a high differential between the leaf and stem water potential in both phenological stages. Furthermore, a decrease in net assimilation was observed, and it could be explained in part by non-stomatal factors such as the high radiation and temperature observed at the end of the season. Despite the drought, the cobs did not present a significantly lower quality compared to the cobs of plants without stress.

Carbon dioxide and light curves and leaf gas exchange responses to shade levels in bell pepper (Capsicum annuum L.)

Vegetable crops grown under shade nets typically show increased yield and quality. However, little is known about the photosynthetic responses at various CO₂ and light levels under nets. This study aimed to determine carbon dioxide (A/Cc) and light (A/I) curves and leaf gas exchange response of bell pepper plants grown under nets at various shade levels. Experiments were conducted in the spring-summer of 2016 and 2018 in Tifton, Georgia (GA), USA, with five shade treatments [0 % (open field), 30 %, 47 %, 63 %, and 80 %]. The A/Cc curves revealed that plants grown at 30 % shade and in the open field had similar carboxylation, electron transport, and triose phosphate utilization rates. The A/I curves showed that gross and net photosynthesis were highest at 30 % shade. The 30 % shade had similar stomatal conductance, intercellular CO₂, electron transport rate, and water use efficiency compared to the open field. The A/Cc and A/I curves and the leaf gas exchange parameters explained the intrinsic causes for the higher net photosynthesis at 30 % shade than in open-field bell pepper. The information from A/Cc-curves, A/I-curves, and leaf gas exchange is applicable in modeling photosynthesis and predicting primary productivity for C3 plants in elevated-CO₂ and altered-light environments.

Reproductive phases coincide with changes in morphology and photosynthetic physiology in an endangered cycad species

Cycadales is highly endangered and one of the oldest dioecious gymnosperm lineages, making their reproductive biology highly relevant to conservation efforts and our understanding of the impact of dioecy, yet cycad reproductive ecophysiology is poorly understood. We examined how the costs associated with reproduction may impact basic physiological variation in cycad species. Specifically, we measured traits related to functional morphology and photosynthetic physiology in sterile and fertile staminate plants ('males') of Zamia portoricensis. Light response curves showed that sterile plants had greater light-use efficiency and maximum photosynthetic capacity per area compared with fertile plants. However, fertile and sterile plants exhibited similar respiration rates. We found significantly more nitrogen in leaves of fertile individuals, but similar nitrogen isotope composition and no differences in carbon content between sterile and fertile individuals. Despite having lower leaf-level photosynthetic rates, fertile plants had greater canopy-level photosynthesis than sterile plants, which was achieved by increasing leaf number and total leaf area. Our data suggest that sterile individuals may have greater light demands relative to fertile individuals, and fertile individuals may have greater nitrogen demands, which may be critical for successful reproductive events in staminate plants of the endangered cycad, Z. portoricensis.

Nitrogen deposition increases xylem hydraulic sensitivity but decreases stomatal sensitivity to water potential in two temperate deciduous tree species

Although the effects of nitrogen deposition on tree water relations are studied extensively, its impact on the relative sensitivities of stomatal and xylem hydraulic conductance to vapor pressure deficit and water potential is still poorly understood. This study investigated the effects of a 7-year N deposition treatment on the responses of leaf water relations and sensitivity of canopy stomatal conductance to vapor pressure deficit (VPD) and water potential, as well as the sensitivity of branch hydraulic conductance to water potential in a dominant tree species (Quercus wutaishanica) and an associated tree species (Acer mono) in a temperate forest. It was found that the N deposition increased stomatal sensitivity to VPD, decreased stomatal sensitivity to water potential, and increased the vulnerability of the hydraulic system to cavitation in both species. The standardized stomatal sensitivity to VPD, however, was not affected by the N deposition, indicating that the stomata maintained the ability to regulate the water balance under nitrogen deposition condition. Although the increased stomatal sensitivity to VPD could compensate the decreased stomatal sensitivity to water potential to some extent, the combined response would increase the percentage loss of hydraulic conductivity (PLC) when 50 % loss in stomatal conductance occurred, particularly in the dominant species Q. wutaishanica. The result indicates that N deposition would increase the risk of hydraulic failure in those species if the soil and/or air becomes drier under future climate change scenarios. The results of the study can have significant implications on the modelling of ecosystem vulnerability to drought under the scenario of atmospheric nitrogen deposition.

Precision phenotyping across the life cycle to validate and decipher drought-adaptive QTLs of wild emmer wheat (Triticum turgidum ssp. dicoccoides) introduced into elite wheat varieties

Drought events or the combination of drought and heat conditions are expected to become more frequent due to global warming, and wheat yields may fall below their long-term average. One way to increase climate-resilience of modern high-yielding varieties is by their genetic improvement with beneficial alleles from crop wild relatives. In the present study, the effect of two beneficial QTLs introgressed from wild emmer wheat and incorporated in the three wheat varieties BarNir, Zahir and Uzan was studied under well-watered conditions and under drought stress using non-destructive High-throughput Phenotyping (HTP) throughout the life cycle in a single pot-experiment. Plants were daily imaged with RGB top and side view cameras and watered automatically. Further, at two time points, the quantum yield of photosystem II was measured with a top view FluorCam. The QTL carrying near isogenic lines (NILs) were compared with their corresponding parents by t-test for all non-invasively obtained traits and for the manually determined agronomic and yield parameters. Data quality of phenotypic traits (repeatability) in the controlled HTP experiment was above 85% throughout the life cycle and at maturity. Drought stress had a strong effect on growth in all wheat genotypes causing biomass reduction from 2% up to 70% at early and late points in the drought period, respectively. At maturity, the drought caused 47-55% decreases in yield-related traits grain weight, straw weight and total biomass and reduced TKW by 10%, while water use efficiency (WUE) increased under drought by 29%. The yield-enhancing effect of the introgressed QTLs under drought conditions that were previously demonstrated under field/screenhouse conditions in Israel, could be mostly confirmed in a greenhouse pot experiment using HTP. Daily precision phenotyping enabled to decipher the mode of action of the QTLs in the different genetic backgrounds throughout the entire wheat life cycle. Daily phenotyping allowed a precise determination of the timing and size of the QTLs effect (s) and further yielded information about which image-derived traits are informative at which developmental stage of wheat during the entire life cycle. Maximum height and estimated biovolume were reached about a week after heading, so experiments that only aim at exploring these traits would not need a longer observation period. To obtain information on different onset and progress of senescence, the CVa curves represented best the ongoing senescence of plants. The QTL on 7A in the BarNir background was found to improve yield under drought by increased biomass growth, a higher photosynthetic performance, a higher WUE and a "stay green effect."

Quantitative System Modeling Bridges the Gap between Macro- and Microscopic Stomatal Model

An understanding of stomatal function is vital for the carbon and water cycle in nature. In the past decades, various stomatal models with different functions have been established to investigate and predict stomatal behavior and its association with plants' responses to the changing climate, but with limited biological information provided. On the other hand, many stomatal models at the molecular level focus on simulating and predicting molecular practices and ignore the dynamic quantitative information. As a result, stomatal models are often divided between the microscopic and macroscopic scales. Quantitative systems analysis offers an effective in silico approach to explore the link between microscopic gene function and macroscopic physiological traits. As a first step, a systems model, OnGuard, is developed for the investigation of guard cell ion homeostasis and its relevance to the dynamic stomatal movements. The system model has already yielded a series of important predictions to guide molecular physiological studies in stomata. It also exhibits great potential in breeding practice, which represents a key step toward "Breeding by design" of improving plant carbon-water use efficiency. Here, the development of stomatal models is reviewed, and the future perspectives on stomatal modeling for agricultural and ecological applications are discussed.

Elevated carbon assimilation and metabolic reprogramming in tomato high pigment mutants support the increased production of pigments

High pigment mutants in tomato (Solanum lycopersicum L.), a loss of function in the control of photomorphogenesis, with greater pigment production, show altered growth, greater photosynthesis, and a metabolic reprogramming. High pigment mutations cause plants to be extremely responsive to light and produce excessive pigmentation as well as fruits with high levels of health-beneficial nutrients. However, the association of these traits with changes in the physiology and metabolism of leaves remains poorly understood. Here, we performed a detailed morphophysiological and metabolic characterization of high pigment 1 (hp1) and high pigment 2 (hp2) mutants in tomato (Solanum lycopersicum L. 'Micro-Tom') plants under different sunlight conditions (natural light, 50% shading, and 80% shading). These mutants occur in the DDB1 (hp1) and DET1 (hp2) genes, which are related to the regulation of photomorphogenesis and chloroplast development. Our results demonstrate that these mutations delay plant growth and height, by affecting physiological and metabolic parameters at all stages of plant development. Although the mutants were characterized by higher net CO₂ assimilation, lower stomatal limitation, and higher carboxylation rates, with anatomical changes that favour photosynthesis, we found that carbohydrate levels did not increase, indicating a change in the energy flow. Shading minimized the differences between mutants and the wild type or fully reversed them in the phenotype at the metabolic level. Our results indicate that the high levels of pigments in hp1 and hp2 mutants represent an additional energy cost for these plants and that extensive physiological and metabolic reprogramming occurs to support increased pigment biosynthesis.

Humidity gradients in the air spaces of leaves

Stomata are orifices that connect the drier atmosphere with the interconnected network of more humid air spaces that surround the cells within a leaf. Accurate values of the humidities inside the substomatal cavity, w_i, and in the air, w_a, are needed to estimate stomatal conductance and the CO₂ concentration in the internal air spaces of leaves. Both are vital factors in the understanding of plant physiology and climate, ecological and crop systems. However, there is no easy way to measure w_i directly. Out of necessity, w_i has been taken as the saturation water vapour concentration at leaf temperature, w_sat, and applied to the whole leaf intercellular air spaces. We explored the occurrence of unsaturation by examining gas exchange of leaves exposed to various magnitudes of w_sat - w_a, or Δw, using a double-sided, clamp-on chamber, and estimated degrees of unsaturation from the gradient of CO₂ across the leaf that was required to sustain the rate of CO₂ assimilation through the upper surface. The relative humidity in the substomatal cavities dropped to about 97% under mild Δw and as dry as around 80% when Δw was large. Measurements of the diffusion of noble gases across the leaf indicated that there were still regions of near 100% humidity distal from the stomatal pores. We suggest that as Δw increases, the saturation edge retreats into the intercellular air spaces, accompanied by the progressive closure of mesophyll aquaporins to maintain the cytosolic water potential.

An improved representation of the relationship between photosynthesis and stomatal conductance leads to more stable estimation of conductance parameters and improves the goodness-of-fit across diverse data sets

Stomata play a central role in surface-atmosphere exchange by controlling the flux of water and CO₂ between the leaf and the atmosphere. Representation of stomatal conductance (g_sw ) is therefore an essential component of models that seek to simulate water and CO₂ exchange in plants and ecosystems. For given environmental conditions at the leaf surface (CO₂ concentration and vapor pressure deficit or relative humidity), models typically assume a linear relationship between g_sw and photosynthetic CO₂ assimilation (A). However, measurement of leaf-level g_sw response curves to changes in A are rare, particularly in the tropics, resulting in only limited data to evaluate this key assumption. Here, we measured the response of g_sw and A to irradiance in six tropical species at different leaf phenological stages. We showed that the relationship between g_sw and A was not linear, challenging the key assumption upon which optimality theory is based-that the marginal cost of water gain is constant. Our data showed that increasing A resulted in a small increase in g_sw at low irradiance, but a much larger increase at high irradiance. We reformulated the popular Unified Stomatal Optimization (USO) model to account for this phenomenon and to enable consistent estimation of the key conductance parameters g₀ and g₁ . Our modification of the USO model improved the goodness-of-fit and reduced bias, enabling robust estimation of conductance parameters at any irradiance. In addition, our modification revealed previously undetectable relationships between the stomatal slope parameter g₁ and other leaf traits. We also observed nonlinear behavior between A and g_sw in independent data sets that included data collected from attached and detached leaves, and from plants grown at elevated CO₂ concentration. We propose that this empirical modification of the USO model can improve the measurement of g_sw parameters and the estimation of plant and ecosystem-scale water and CO₂  fluxes.

CO2 fertilization of terrestrial photosynthesis inferred from site to global scales

The magnitude of the CO₂ fertilization effect on terrestrial photosynthesis is uncertain because it is not directly observed and is subject to confounding effects of climatic variability. We apply three well-established eco-evolutionary optimality theories of gas exchange and photosynthesis, constraining the main processes of CO₂ fertilization using measurable variables. Using this framework, we provide robust observationally inferred evidence that a strong CO₂ fertilization effect is detectable in globally distributed eddy covariance networks. Applying our method to upscale photosynthesis globally, we find that the magnitude of the CO₂ fertilization effect is comparable to its in situ counterpart but highlight the potential for substantial underestimation of this effect in tropical forests for many reflectance-based satellite photosynthesis products.

Global photosynthesis is increasing with elevated atmospheric CO₂ concentrations, a response known as the CO₂ fertilization effect (CFE), but the key processes of CFE are not constrained and therefore remain uncertain. Here, we quantify CFE by combining observations from a globally distributed network of eddy covariance measurements with an analytical framework based on three well-established photosynthetic optimization theories. We report a strong enhancement of photosynthesis across the observational network (9.1 gC m⁻² year⁻²) and show that the CFE is responsible for 44% of the gross primary production (GPP) enhancement since the 2000s, with additional contributions primarily from warming (28%). Soil moisture and specific humidity are the two largest contributors to GPP interannual variation through their influences on plant hydraulics. Applying our framework to satellite observations and meteorological reanalysis data, we diagnose a global CO₂-induced GPP trend of 4.4 gC m⁻² year⁻², which is at least one-third stronger than the median trends of 13 dynamic global vegetation models and eight satellite-derived GPP products, mainly because of their differences in the magnitude of CFE in evergreen broadleaf forests. These results highlight the critical role that CFE has played in the global carbon cycle in recent decades.

TOR promotes guard cell starch degradation by regulating the activity of β-AMYLASE1 in Arabidopsis

Starch is the main energy storage carbohydrate in plants and serves as an essential carbon storage molecule for plant metabolism and growth under changing environmental conditions. The TARGET of RAPAMYCIN (TOR) kinase is an evolutionarily conserved master regulator that integrates energy, nutrient, hormone, and stress signaling to regulate growth in all eukaryotes. Here, we demonstrate that TOR promotes guard cell starch degradation and induces stomatal opening in Arabidopsis thaliana. Starvation caused by plants growing under short photoperiod or low light photon irradiance, as well as inactivation of TOR, impaired guard cell starch degradation and stomatal opening. Sugar and TOR induce the accumulation of β-AMYLASE1 (BAM1), which is responsible for starch degradation in guard cells. The plant steroid hormone brassinosteroid and transcription factor BRASSINAZOLE-RESISTANT1 play crucial roles in sugar-promoted expression of BAM1. Furthermore, sugar supply induced BAM1 accumulation, but TOR inactivation led to BAM1 degradation, and the effects of TOR inactivation on BAM1 degradation were abolished by the inhibition of autophagy and proteasome pathways or by phospho-mimicking mutation of BAM1 at serine-31. Such regulation of BAM1 activity by sugar-TOR signaling allows carbon availability to regulate guard cell starch metabolism and stomatal movement, ensuring optimal photosynthesis efficiency of plants.

What can mechanistic models tell us about guard cells, photosynthesis, and water use efficiency?

Stomatal pores facilitate gaseous exchange between the inner air spaces of the leaf and the atmosphere. The pores open to enable CO₂ entry for photosynthesis and close to reduce transpirational water loss. How stomata respond to the environment has long attracted interest in modeling as a tool to understand the consequences for the plant and for the ecosystem. Models that focus on stomatal conductance for gas exchange make intuitive sense, but such models need also to connect with the mechanics of the guard cells that regulate pore aperture if we are to understand the 'decisions made' by stomata, their impacts on the plant and on the global environment.

Characteristic of Stomatal Conductance and Optimal Stomatal Behaviour in an Arid Oasis of Northwestern China

Stomatal conductance (gs), the process that governs plant carbon uptake and water loss, is fundamental to most Land Surface Models (LSMs). With global change accelerating, more attention should be paid to investigating stomatal behavior, especially in extremely arid areas. In this study, gas exchange measurements and environmental/biological variables observations during growing seasons in 2016 and 2017 were combined to investigate diurnal and seasonal characteristics of gs and the applicability of the optimal stomatal conductance model in a desert oasis vineyard. The results showed that the responses of gs to environmental factors (photosynthesis active radiation, PAR; vapor pressure deficit, VPD; and temperature, T) formed hysteresis loops in the daytime. The stomatal conductance slope, g1, a parameter in the unified stomatal optimal model, varied in different growing seasons and correlated with the soil-to-leaf hydraulic conductance (KL). These results indicated the potential bias when using a constant g1 value to simulate gs and highlighted that the water-use strategy of oasis plants might not be consistent throughout the entire growing season. Our findings further help to achieve a better understanding of stomata behavior in responding to climate change and encourage future efforts toward a more accurate parameterization of gs to improve the modeling of LSMs.

Mesophyll conductance in two cultivars of wheat grown in glacial to super-elevated CO2 concentrations

Mesophyll conductance (gm) is an important factor limiting photosynthesis. However, gm response to long-term growth in variable [CO2] is not well understood, particularly in crop plants. Here, we grew two cultivars of wheat (Halberd and Cranbrook), known to differ in gm under current environmental conditions, in four [CO2] treatments: glacial (206 μmol mol-1), pre-industrial (344 μmol mol-1), current ambient (489 μmol mol-1), and super-elevated (1085 μmol mol-1), and two water treatments (well-watered and moderate water limitation), to develop an evolutionary and future climate perspective on gm control of photosynthesis and water-use efficiency (WUE). In the two wheat genotypes, gm increased with rising [CO2] from glacial to ambient [CO2], but declined at super-elevated [CO2]. The responses of gm to different growth [CO2] also depend on water stress; however, the specific mechanism of gm response to [CO2] remains unclear. Although gm and gm/gsc (mesophyll conductance/stomatal conductance) were strongly associated with the variability of photosynthetic rates (A) and WUE, we found that plants with higher gm may increase A without increasing gsc, which increased WUE. These results may be useful to inform plant breeding programmes and cultivar selection for Australian wheat under future environmental conditions.

A canopy conductance model with temporal physiological and environmental factors

Canopy conductance, one of the key variables in simulating evapotranspiration, is strongly influenced by the physiological status of a plant and environmental factors, including photosynthetically active radiation, vapor pressure deficit, air temperature, soil moisture and so on. However, the restrictive functions used to represent these factors rarely consider the dynamics of physiological and environmental factors. This study proposed an improved canopy conductance model by regarding radiation and vapor pressure deficit as the two main influencing factors, quantifying the temporal variation in stomatal responses to radiation that notably adjust stomatal behavior, parameterizing maximum stomatal conductance with plant type-specific functions and proposing a new restrictive function for the VPD. The improved canopy conductance model was incorporated in a surface conductance model for estimating surface conductance and evapotranspiration at 8 flux stations at the Heihe River Basin and the Haihe River Basin. The estimated results were the most accurate when comparing to two other models. Furthermore, the model performance was acceptable when most of the parameters were assumed to be constant across the sites except the reference canopy conductance G_{c, ref} and the soil evaporation parameter α_s, which suggests that the improved canopy conductance model could be used as a parsimony model for improving canopy conductance predictions and water use efficiency over typical climate zones and underlying surface types in North of China.

Guard cell endomembrane Ca2+-ATPases underpin a 'carbon memory' of photosynthetic assimilation that impacts on water-use efficiency

Stomata of most plants close to preserve water when the demand for CO₂ by photosynthesis is reduced. Stomatal responses are slow compared with photosynthesis, and this kinetic difference erodes assimilation and water-use efficiency under fluctuating light. Despite a deep knowledge of guard cells that regulate the stoma, efforts to enhance stomatal kinetics are limited by our understanding of its control by foliar CO₂. Guided by mechanistic modelling that incorporates foliar CO₂ diffusion and mesophyll photosynthesis, here we uncover a central role for endomembrane Ca²⁺ stores in guard cell responsiveness to fluctuating light and CO₂. Modelling predicted and experiments demonstrated a delay in Ca²⁺ cycling that was enhanced by endomembrane Ca²⁺-ATPase mutants, altering stomatal conductance and reducing assimilation and water-use efficiency. Our findings illustrate the power of modelling to bridge the gap from the guard cell to whole-plant photosynthesis, and they demonstrate an unforeseen latency, or 'carbon memory', of guard cells that affects stomatal dynamics, photosynthesis and water-use efficiency.

Understanding the mechanistic basis of adaptation of perennial Sarcocornia quinqueflora species to soil salinity

Succulent halophytes can be used as convenient models for understanding the mechanistic basis of plant adaptation to salt stress. In this work, effects of salinity (0-1000 mM NaCl range) on growth, ion accumulation, and stomatal features were investigated in the succulent halophyte Sarcocornia quinqueflora. Elevated salinity levels up to 400 mM NaCl largely promoted dry matter yield, succulence, shoot surface area, and stomatal characteristics. Plant growth was optimal at 200 mM NaCl and reduced at concentrations exceeding 600 mM NaCl. Osmotic adjustment in a succulent shoot was achieved by a massive accumulation of inorganic ions, with Na⁺ and Cl^- contributing approximately 85% of its osmolality, while organic compatible solutes and K⁺ were responsible for only approximately 15%. Shoot K⁺ was unchanged across the entire range of salinity treatments (200-1000 mM NaCl) and positively correlated with the transpiration rate (R = 0.98). Carbohydrates were not reduced at high salinity compared to plants at optimal conditions, implying that growth retardation at severe salt dosages was attributed to limitations in a vacuolar Na⁺ and Cl^- sequestrations capacity rather than inadequate photosynthesis and/or substrate limitation. It is concluded that the superior salt tolerance of S. quinqueflora is achieved by the effective reliance on Na⁺ and Cl^- accumulation for osmoregulation and turgor maintenance, and efficient K⁺ homeostasis for adequate stomatal functioning over the entire salinity range. The above findings could be instrumental in developing strategies to improve salinity stress tolerance in perennial horticultural crops and optimize their water-use efficiency.

Linking remote sensing parameters to CO2 assimilation rates at a leaf scale

Solar-induced chlorophyll fluorescence (SIF) and photochemical reflectance index (PRI) are expected to be useful for remote sensing of photosynthetic activity at various spatial scales. This review discusses how chlorophyll fluorescence and PRI are related to the CO₂ assimilation rate at a leaf scale. Light energy absorbed by photosystem II chlorophylls is allocated to photochemistry, fluorescence, and heat dissipation evaluated as non-photochemical quenching (NPQ). PRI is correlated with NPQ because it reflects the composition of xanthophylls, which are involved in heat dissipation. Assuming that NPQ is uniquely related to the photochemical efficiency (quantum yield of photochemistry), photochemical efficiencies can be assessed from either chlorophyll fluorescence or PRI. However, this assumption may not be held under some conditions such as low temperatures and photoinhibitory environments. Even in such cases, photosynthesis may be estimated more accurately if both chlorophyll fluorescence and PRI are determined simultaneously. To convert from photochemical efficiency to CO₂ assimilation, environmental responses in stomatal conductance also need to be considered. Models linking chlorophyll fluorescence and PRI with CO₂ assimilation rates will contribute to understanding and future prediction of the global carbon cycle.

How does leaf physiological acclimation impact forage production and quality of a warmed managed pasture of Stylosanthes capitata under different conditions of soil water availability?

Tropical pastures play a significant role in the global carbon cycle and are crucial for world livestock production. Despite its importance, there is a paucity of field studies that clarify how tropical pasture species will be affected by environmental changes predicted for tropical regions. Using a temperature-free air-controlled enhancement (T-FACE) system, we increased canopy temperature (+2 °C over ambient) and evaluated the effects of warming under two soil moisture conditions in a factorial design over the physiology, forage production, and forage quality of a tropical forage legume, Stylosanthes capitata. Under well-watered conditions, warming increased the PSII efficiency, net photosynthesis, and aboveground biomass accumulation, but reduced forage quality and digestibility by decreasing crude protein content and increasing lignin content. Non-irrigated conditions under ambient temperature reduced leaf water status presumably promoting the reduction in net photosynthesis, forage production, and forage quality and digestibility. Under the combination of canopy warming and non-irrigated conditions, warming mitigated the effects of reduced soil moisture on leaf photosynthesis and biomass production, but a significant interaction reduced forage quality and digestibility more than under isolated treatments of warming or non-irrigated conditions. We found a potential physiological acclimation of the tropical forage species to moderate warming when grown under rainfed or well-watered conditions. However, this acclimation was achieved due to a trade-off that reduced forage nutritional value and digestibility that may impact future animal feeding, livestock production, and would contribute to methane emissions.

Improved photosynthetic characteristics correlated with enhanced biomass in a heterotic F1 hybrid of maize (Zea mays L.)

Heterosis is a phenomenon wherein F₁ hybrid often displays phenotypic superiority and surpasses its parents in terms of growth and agronomic traits. Investigations on the physiological and biochemical properties of the heterotic F₁ hybrid are important to uncover the mechanisms underlying heterosis in plants. In the present study, the photosynthetic capacity of a heterotic F₁ hybrid of Zea mays L. (DHM 117) that exhibited a higher growth rate and increased biomass was compared with its parental inbreds at vegetative and reproductive stages in the field during 2017 and 2018. The net photosynthetic rate (P_n), stomatal conductance (g_s), transpiration rate (E) as well as foliar carbohydrates were higher in F₁ hybrid than parental inbreds at vegetative and reproductive stages. An increase in total chlorophyll content along with better chlorophyll a fluorescence characteristics including effective quantum yield of photosystem II (ΔF/F_m'), maximum quantum yield of PSII (F_v/F_m), photochemical quenching (q_p) and decreased non-photochemical quenching (NPQ) was observed in F₁ hybrid than the parental inbreds. Further, the expression of potential genes related to C₄ photosynthesis was considerably upregulated in F₁ hybrid than the parental inbreds during vegetative and reproductive stages. Moreover, the F₁ hybrid exhibited distinct heterosis in yield with 63% and 62% increase relative to parental inbreds during 2017 and 2018. We conclude that improved photosynthetic efficiency associated with increased foliar carbohydrates could have contributed to higher growth rate, biomass and yield in the F₁ hybrid.

Stomatal density and mechanics are critical for high productivity: insights from amphibious ferns

Angiosperm dominance in terrestrial landscapes is partially attributable to high photosynthetic capacities. Angiosperms benefit from diverse anatomical and physiological adaptations, making it difficult to determine which factors may have been prerequisites for the evolution of enhanced photosynthetic rates in this group. We employed a novel approach to this problem: comparisons between angiosperms and Marsileaceae, a family of semi-aquatic ferns that are among the only land plants to match angiosperm photosynthetic rates. We found that Marsileaceae have very high stomatal densities and, like angiosperms but unlike all other ferns previously studied, exhibit wrong-way stomatal responses to excision. These results suggest that stomatal density and a little-studied angiosperm trait, the capacity for lateral displacement of guard cells into neighboring epidermal cells, are crucial for facilitating high rates of gas exchange. Our analysis also associates these adaptations in Marsileaceae with an increased risk of excessive water loss during drought. Our findings indicate that evolution in stomatal physiology was a prerequisite for high photosynthetic capacities in vascular plants and a key driver of the abrupt Cretaceous rise of the angiosperms.

Coupled Gas-Exchange Model for C4 Leaves Comparing Stomatal Conductance Models

Plant simulation models are abstractions of plant physiological processes that are useful for investigating the responses of plants to changes in the environment. Because photosynthesis and transpiration are fundamental processes that drive plant growth and water relations, a leaf gas-exchange model that couples their interdependent relationship through stomatal control is a prerequisite for explanatory plant simulation models. Here, we present a coupled gas-exchange model for C4 leaves incorporating two widely used stomatal conductance submodels: Ball–Berry and Medlyn models. The output variables of the model includes steady-state values of CO2 assimilation rate, transpiration rate, stomatal conductance, leaf temperature, internal CO2 concentrations, and other leaf gas-exchange attributes in response to light, temperature, CO2, humidity, leaf nitrogen, and leaf water status. We test the model behavior and sensitivity, and discuss its applications and limitations. The model was implemented in Julia programming language using a novel modeling framework. Our testing and analyses indicate that the model behavior is reasonably sensitive and reliable in a wide range of environmental conditions. The behavior of the two model variants differing in stomatal conductance submodels deviated substantially from each other in low humidity conditions. The model was capable of replicating the behavior of transgenic C4 leaves under moderate temperatures as found in the literature. The coupled model, however, underestimated stomatal conductance in very high temperatures. This is likely an inherent limitation of the coupling approaches using Ball–Berry type models in which photosynthesis and stomatal conductance are recursively linked as an input of the other.

Growth-Stimulatory Effect of Quorum Sensing Signal Molecule N-Acyl-Homoserine Lactone-Producing Multi-Trait Aeromonas spp. on Wheat Genotypes Under Salt Stress

Salinity is one of the major threats to agricultural productivity worldwide. Soil and plant management practices, along with inoculation with plant-beneficial bacteria, play a key role in the plant’s tolerance toward salinity stress. The present study demonstrates the potential of acyl homoserine lactone (AHL)-producing plant growth promoting rhizobacteria (PGPR) strains of Aeromonas sp., namely, SAL-17 (accession no. HG763857) and SAL-21 (accession no. HG763858), for growth promotion of two wheat genotypes inherently different for salt tolerance potential. AHLs are the bacterial signal molecules that regulate the expression of various genes in bacteria and plants. Both Aeromonas spp., along with innate plant-growth-promoting (PGP) and salt tolerance traits, showed AHL production which was identified on tandem mass spectrometry as C6-HSL, 3-OH-C5-HSL, 3-OH-C6-HSL, 3-oxo-C7-HSL C10-HSL, 3-oxo-C10-HSL, 3-OH-C10-HSL, 3-oxo-C12-HSL and C6-HSL, and 3-oxo-C10-HSL. The exogenous application of purified AHLs (mix) significantly improved various root parameters at 200 mM NaCl in both salt-sensitive (SSG) and salt-tolerant (STG) genotypes, where the highest increase (≈80%) was observed where a mixture of both strains of AHLs was used. Confocal microscopic observations and root overlay assay revealed a strong root colonization potential of the two strains under salt stress. The inoculation response of both STG and SSG genotypes was evaluated with two AHL-producing strains (SAL-17 and SAL-21) and compared to non-AHL-producing Aeromonas sp. SAL-12 (accession no. HG763856) in saline (EC = 7.63 ms/cm²) and non-saline soil. The data reveal that plants inoculated with the bacterial consortium (SAL-21 + SAL-17) showed a maximum increase in leaf proline content, nitrate reductase activity, chlorophyll a/b, stomatal conductance, transpiration rate, root length, shoot length, and grain weight over non-inoculated plants grown in saline soil. Both STG and SSG showed relative effectiveness toward inoculation (percent increase for STG: 165–16%; SSG: 283–14%) and showed a positive correlation of grain yield with proline and nitrate reductase activity. Furthermore, principal component analysis (PCA) and categorical PCA analysis clearly showed an inoculation response in both genotypes, revealing the effectiveness of AHL-producing Aeromonas spp. than the non-AHL-producing strain. The present study documents that the consortium of salt-tolerant AHL-producing Aeromonas spp. is equally effective for sustaining the growth of STG as well as SSG wheat genotypes in saline soil, but biosafety should be fully ensured before field release.

Growing-season warming and winter soil freeze/thaw cycles increase transpiration in a northern hardwood forest

Climate models project higher growing-season temperatures and a decline in the depth and duration of winter snowpack throughout many north temperate ecosystems over the next century. A smaller snowpack is projected to induce more frequent soil freeze/thaw cycles in winter in northern hardwood forests of the northeastern United States. We measured the combined effects of warmer growing-season soil temperatures and increased winter freeze/thaw cycles on rates of leaf-level photosynthesis and transpiration (sap flow) of red maple (Acer rubrum) trees in a northern hardwood forest at the Climate Change Across Seasons Experiment at Hubbard Brook Experimental Forest in New Hampshire. Soil temperatures were warmed 5°C above ambient temperatures during the growing season and soil freeze/thaw cycles were induced in winter to mimic the projected changes in soil temperature over the next century. Relative to reference plots, growing-season soil warming increased rates of leaf-level photosynthesis by up to 85.32 ± 4.33%, but these gains were completely offset by soil freeze/thaw cycles in winter, suggesting that increased freeze/thaw cycles in winter over the next 100 yr will reduce the effect of warming on leaf-level carbon gains. Soil warming in the growing season increased rates of transpiration per kilopascal of vapor pressure deficit (VPD) by up to 727.39 ± 0.28%, even when trees were exposed to increased frequency of soil freeze/thaw cycles in the previous winter, which could influence regional hydrology in the future. Using climate projections downscaled from the Coupled Model Intercomparison Project, we project increased rates of whole-season transpiration in these forests over the next century by 42-61%. We also project 52-77 additional days when daily air temperatures will be above the long-term average daily maximum during the growing season at Hubbard Brook. Together, these results show that projected changes in climate across both the growing season and winter are likely to cause greater rates of water uptake and have no effect on rates of leaf-level carbon uptake by trees, with potential ecosystem consequences for hydrology and carbon cycling in northern hardwood forests.

Predicting the unexpected in stomatal gas exchange: not just an open-and-shut case

Plant membrane transport, like transport across all eukaryotic membranes, is highly non-linear and leads to interactions with characteristics so complex that they defy intuitive understanding. The physiological behaviour of stomatal guard cells is a case in point in which, for example, mutations expected to influence stomatal closing have profound effects on stomatal opening and manipulating transport across the vacuolar membrane affects the plasma membrane. Quantitative mathematical modelling is an essential tool in these circumstances, both to integrate the knowledge of each transport process and to understand the consequences of their manipulation in vivo. Here, we outline the OnGuard modelling environment and its use as a guide to predicting the emergent properties arising from the interactions between non-linear transport processes. We summarise some of the recent insights arising from OnGuard, demonstrate its utility in interpreting stomatal behaviour, and suggest ways in which the OnGuard environment may facilitate 'reverse-engineering' of stomata to improve water use efficiency and carbon assimilation.

Legacy effects of historical grazing alter leaf stomatal characteristics in progeny plants

Grazing, one of the primary utilization modes of grassland, is the main cause of grassland degradation. Historical overgrazing results in dwarf phenotype and decreased photosynthesis of perennial plants. However, it remains unknown what the mechanism underlying of this legacy effect is, and the role of stomata in the resulting decreased photosynthesis also remains unclear. To address these questions, differences in stomatal density, length and width on both adaxial and abaxial epidermis were compared between overgrazing and ungrazed Leymus chinensis offspring by using rhizome buds cultivated in a greenhouse, and the correlation between photosynthetic capacity and stomatal behavior was also investigated. Our results showed that historical grazing significantly impacted phenotype, photosynthesis and stomatal traits of L. chinensis. The offspring plants taken from overgrazed parents were dwarfed compared to those taken from ungrazed parents, and the photosynthesis and stomatal conductance of plants with a grazing history decreased by 28.6% and 21.3%, respectively. In addition, stomatal density and length on adaxial and abaxial leaf surfaces were significantly increased; however, stomatal width on abaxial leaf surfaces of overgrazed L. chinensis was significantly decreased compared with ungrazed individuals. Moreover, the expression patterns of eight genes related to stomatal regulation were tested: seven were down-regulated (2-18 times) and one was up-regulated (three times). Genes, involved in ABC transporter and receptor-like serine/threonine protein kinase were down-regulated. These results suggest that legacy effects of historical grazing affect the stomatal conductance by decreasing the stomatal width in progeny plants, which thus results in lower photosynthesis. Furthermore, changes of stomatal traits and function were regulated by the inhibition of ABC transporter and serine/threonine protein kinase. These findings are helpful for future exploration of the possible mechanisms underlying the response of grassland plants to long-term overgrazing.

Trunk Girdling Increased Stomatal Conductance in Cabernet Sauvignon Grapevines, Reduced Glutamine, and Increased Malvidin-3-Glucoside and Quercetin-3-Glucoside Concentrations in Skins and Pulp at Harvest

Girdling is a traditional horticultural practice applied at fruit set or other phenological stages, and is used mostly as a vine management. In grapevines, it is used primarily for table grapes to improve berry weight, sugar content, color, and to promote early harvest. The objective of this study was to evaluate the effect of trunk girdling applied at veraison, in 'Cabernet Sauvignon' wine grapes (Vitis vinifera L.), on agronomical and physiological parameters during vine development from the onset of ripening (veraison) to harvest, and additionally to quantify the effect of girdling on primary and secondary metabolism. Girdling was applied 146 days after pruning (dap) at veraison, when berry sampling for metabolomics and agronomical evaluations commenced, with a further three sampling dates until harvest, at 156 dap (30% maturation, 10 days after girdling-dag), 181 dap (70% maturation, 35 dag), and 223 dap (commercial harvest, 77 dag). Skin/pulp and seed tissues were extracted separately and metabolomics was performed using one-dimensional proton nuclear magnetic resonance (1D 1H NMR) spectroscopy and high performance liquid chromatography (HPLC-DAD). At harvest, girdling significantly increased stomatal conductance (gs) in vines, decreased glutamine concentrations, and increased anthocyanin and flavonol concentrations in the skin/pulp tissues of grape berries. Berry weight was reduced by 27% from 181 dap to harvest, and was significantly higher in grapes from girdled vines at 181 dap. Sugars, organic acids, and other amino acids in skin/pulp or seeds were not significantly different, possibly due to extra-fascicular phloem vessels transporting metabolites from leaves to the roots. Using a metabolomics approach, differences between skin/pulp and seeds tissues were meaningful, and a greater number of secondary metabolites in skin/pulp was affected by girdling than in seeds. Girdling is a simple technique that could easily be applied commercially on vine management to improve berry color and other phenolics in 'Cabernet Sauvignon' grapes.

SUGAR Model-Assisted Analysis of Carbon Allocation and Transformation in Tomato Fruit Under Different Water Along With Potassium Conditions

Carbohydrate concentrations in fruit are closely related to the availability of water and mineral nutrients. Water stress and minerals alter the assimilation, operation, and distribution of carbohydrates, thereby affecting the fruit quality. The SUGAR model was used to investigate the carbon balance in tomato fruit during different growth stages when available water was varied and potassium added. Further, we quantitatively studied the distribution of photoassimilates such as structural carbohydrates, soluble sugars, and starch in fruit and evaluated their response to water and potassium supply. The results revealed that the carbon allocation and transformation dynamically changed during the all growth stages; in fact, variation in carbon content showed similar trends for different water along with potassium treatments, carbon allocation during the early development stages was mainly to starch and structural carbon compounds. The relative rate of carbon conversion of soluble sugars to structural carbon compounds (k 3) and of soluble sugars to starch (k 5m ) peaked during the initial stage and then dropped during fruit growth and development stages. Carbon was primarily allocated as soluble sugars and starch was converted to soluble sugars at fruit maturation. k 3(t) and k 5m (t) approached zero at the end of the growth stage, mainly due to sugar accumulation. Potassium application can significantly raise carbon flows imported (C supply ) from the phloem into the fruit and thus increased carbon allocation to soluble sugars over the entire growth period. Potassium addition during the fruit maturation stage decreased the content of starch and other carbon compounds. Water deficit regulated carbon allocation and increased soluble sugar content but reduced structural carbon content, thereby improving fruit quality.

Plant responses to rising vapor pressure deficit

Recent decades have been characterized by increasing temperatures worldwide, resulting in an exponential climb in vapor pressure deficit (VPD). VPD has been identified as an increasingly important driver of plant functioning in terrestrial biomes and has been established as a major contributor in recent drought-induced plant mortality independent of other drivers associated with climate change. Despite this, few studies have isolated the physiological response of plant functioning to high VPD, thus limiting our understanding and ability to predict future impacts on terrestrial ecosystems. An abundance of evidence suggests that stomatal conductance declines under high VPD and transpiration increases in most species up until a given VPD threshold, leading to a cascade of subsequent impacts including reduced photosynthesis and growth, and higher risks of carbon starvation and hydraulic failure. Incorporation of photosynthetic and hydraulic traits in 'next-generation' land-surface models has the greatest potential for improved prediction of VPD responses at the plant- and global-scale, and will yield more mechanistic simulations of plant responses to a changing climate. By providing a fully integrated framework and evaluation of the impacts of high VPD on plant function, improvements in forecasting and long-term projections of climate impacts can be made.

Guard Cell Metabolism and Stomatal Function

The control of gaseous exchange between the leaf and external atmosphere is governed by stomatal conductance (g_s); therefore, stomata play a critical role in photosynthesis and transpiration and overall plant productivity. Stomatal conductance is determined by both anatomical features and behavioral characteristics. Here we review some of the osmoregulatory pathways in guard cell metabolism, genes and signals that determine stomatal function and patterning, and the recent work that explores coordination between g_s and carbon assimilation (A) and the influence of spatial distribution of functional stomata on underlying mesophyll anatomy. We also evaluate the current literature on mesophyll-driven signals that may coordinate stomatal behavior with mesophyll carbon assimilation and explore stomatal kinetics as a possible target to improve A and water use efficiency. By understanding these processes, we can start to provide insight into manipulation of these regulatory pathways to improve stomatal behavior and identify novel unexploited targets for altering stomatal behavior and improving crop plant productivity.

Quantifying Light Response of Leaf-Scale Water-Use Efficiency and Its Interrelationships With Photosynthesis and Stomatal Conductance in C3 and C4 Species

Light intensity (I) is the most dynamic and significant environmental variable affecting photosynthesis (A _n), stomatal conductance (g _s), transpiration (T _r), and water-use efficiency (WUE). Currently, studies characterizing leaf-scale WUE-I responses are rare and key questions have not been answered. In particular, (1) What shape does the response function take? (2) Are there maximum intrinsic (WUE_i; WUE_i-max) and instantaneous WUE (WUE_inst; WUE_inst-max) at the corresponding saturation irradiances (I _i-sat and I _inst-sat)? This study developed WUE_i-I and WUE_inst-I models sharing the same non-asymptotic function with previously published A _n-I and g _s-I models. Observation-modeling intercomparison was conducted for field-grown plants of soybean (C₃) and grain amaranth (C₄) to assess the robustness of our models versus the non-rectangular hyperbola models (NH models). Both types of models can reproduce WUE-I curves well over light-limited range. However, at light-saturated range, NH models overestimated WUE_i-max and WUE_inst-max and cannot return I _i-sat and I _inst-sat due to its asymptotic function. Moreover, NH models cannot describe the down-regulation of WUE induced by high light, on which our models described well. The results showed that WUE_i and WUE_inst increased rapidly within low range of I, driven by uncoupled photosynthesis and stomatal responsiveness. Initial response rapidity of WUE_i was higher than WUE_inst because the greatest increase of A _n and T _r occurred at low g _s. C₄ species showed higher WUE_i-max and WUE_inst-max than C₃ species-at similar I _i-sat and I _inst-sat. Our intercomparison highlighted larger discrepancy between WUE_i-I and WUE_inst-I responses in C₃ than C₄ species, quantitatively characterizing an important advantage of C₄ photosynthetic pathway-higher A _n gain but lower T _r cost per unit of g _s change. Our models can accurately return the wealth of key quantities defining species-specific WUE-I responses-besides A _n-I and g _s-I responses. The key advantage is its robustness in characterizing these entangled responses over a wide I range from light-limited to light-inhibitory light intensities, through adopting the same analytical framework and the explicit and consistent definitions on these responses. Our models are of significance for physiologists and modelers-and also for breeders screening for genotypes concurrently achieving maximized photosynthesis and optimized WUE.

Role of blue and red light in stomatal dynamic behaviour

Plants experience changes in light intensity and quality due to variations in solar angle and shading from clouds and overlapping leaves. Stomatal opening to increasing irradiance is often an order of magnitude slower than photosynthetic responses, which can result in CO2 diffusional limitations on leaf photosynthesis, as well as unnecessary water loss when stomata continue to open after photosynthesis has reached saturation. Stomatal opening to light is driven by two distinct pathways; the 'red' or photosynthetic response that occurs at high fluence rates and saturates with photosynthesis, and is thought to be the main mechanism that coordinates stomatal behaviour with photosynthesis; and the guard cell-specific 'blue' light response that saturates at low fluence rates, and is often considered independent of photosynthesis, and important for early morning stomatal opening. Here we review the literature on these complicated signal transduction pathways and osmoregulatory processes in guard cells that are influenced by the light environment. We discuss the possibility of tuning the sensitivity and magnitude of stomatal response to blue light which potentially represents a novel target to develop ideotypes with the 'ideal' balance between carbon gain, evaporative cooling, and maintenance of hydraulic status that is crucial for maximizing crop performance and productivity.

Phenotypic and Transcriptomic Analysis of Two Pinellia ternata Varieties T2 line and T2Plus line

Pinellia (Pinellia ternata (Thunb.) Breit.), as important medicinal plant, has been used to treat various ailments for a long time. The sixteen ploid plant (2n = 16 * 13 = 208) Pinellia T2Plus line was obtained from an octoploid (2n = 8 * 13 = 104) T2 line by chromosome-doubling technique. Compared with T2 line, the content of various medicinal components (polysaccharide, guanosine, adenosine and ephedrine) was increased in T2Plus line. In this study, the transcriptome of T2 line and T2Plus line were characterized by RNA sequencing (RNA-seq) technology. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways enrichment analysis on differential expressed unigenes (DEGs) revealed that multiple metabolic pathway were enriched significantly, such as 'Starch and sucrose metabolism', 'Purine metabolism', 'Photosynthesis' and six transcription factors (MYB, WRKY, bHLH, lateral organ boundaries domain (LBD), homeodomain-zipper (HD-ZIP) and Ethylene-responsive factor (ERF)) play a key role in difference of transcriptome between T2 line and T2Plus line. These metabolic pathways and transcription factors may play an important role in the difference of medicinal components and epigenetic features between these two Pinellia cultivars. This conclusion provides a robust theoretical basis for the mechanism of the formation of medicinal ingredients in Pinellia cultivars.

Dry Deposition of Ozone over Land: Processes, Measurement, and Modeling

Dry deposition of ozone is an important sink of ozone in near surface air. When dry deposition occurs through plant stomata, ozone can injure the plant, altering water and carbon cycling and reducing crop yields. Quantifying both stomatal and nonstomatal uptake accurately is relevant for understanding ozone's impact on human health as an air pollutant and on climate as a potent short-lived greenhouse gas and primary control on the removal of several reactive greenhouse gases and air pollutants. Robust ozone dry deposition estimates require knowledge of the relative importance of individual deposition pathways, but spatiotemporal variability in nonstomatal deposition is poorly understood. Here we integrate understanding of ozone deposition processes by synthesizing research from fields such as atmospheric chemistry, ecology, and meteorology. We critically review methods for measurements and modeling, highlighting the empiricism that underpins modeling and thus the interpretation of observations. Our unprecedented synthesis of knowledge on deposition pathways, particularly soil and leaf cuticles, reveals process understanding not yet included in widely-used models. If coordinated with short-term field intensives, laboratory studies, and mechanistic modeling, measurements from a few long-term sites would bridge the molecular to ecosystem scales necessary to establish the relative importance of individual deposition pathways and the extent to which they vary in space and time. Our recommended approaches seek to close knowledge gaps that currently limit quantifying the impact of ozone dry deposition on air quality, ecosystems, and climate.

Optimized Protocol for OnGuard2 Software in Studying Guard Cell Membrane Transport and Stomatal Physiology

Stomata are key innovation in plants that drives the global carbon and water cycle. In the past few decades, many stomatal models have been developed for studying gas exchange, photosynthesis, and transpirational characteristics of plants, but they provide limited information on stomatal mechanisms at the molecular and cellular levels. Quantitative mathematical modeling offers an effective in silico approach to explore the link between microscopic transporter functioning and the macroscopic stomatal characteristics. As a first step, a dynamic system model based on the guard cell membrane transport system was developed and encoded in the OnGuard software. This software has already generated a wealth of testable predictions and outcomes sufficient to guide phenotypic and mutational studies. It has a user-friendly interface, which can be easily accessed by researchers to manipulate the key elements and parameters in the system for guard cell simulation in plants. To promote the adoption of this OnGuard application, here we outline a standard protocol that will enable users with experience in basic plant physiology, cell biology, and membrane transport to advance quickly in learning to use it.

Stomatal Response of Maize (Zea mays L.) to Crude Oil Contamination in Soils

In this study, maize plant was cultured in soil contaminated with different levels of crude oil. The purpose was to investigate the change of soil properties, leaf physiological and chemical parameters, and phenanthrene content in the leaf. Results showed that soil water content significantly increased when the levels of total petroleum hydrocarbons were 3700–17,800 mg/kg in soil, and soil electrical conductivity significantly increased compared with the control. In maize leaf, stomatal length and density, as well as K and Na contents decreased in contaminated treatments compared with the control. Stomatal length has a significant positive correlation with K content in leaf (r = 0.92, p < 0.01), while stomatal density was negatively correlated to the crude oil level in soil (r = −0.91, p < 0.05). Accumulation of phenanthrene in maize leaf was mainly through the foliar uptake pathway. Phenanthrene concentrations of maize leaf in oil-treated soil were less than that of the control, which exhibited a significant positive relationship with stomatal length (r = 0.98, p < 0.01). This study demonstrated that the stomata structure of maize could be influenced by crude oil and thus possibly controlling the accumulation of polycyclic aromatic hydrocarbons in aerial tissues. Based on these results, controlling stomata movement will be beneficial to phytoremediation of contaminated soil.

Contrasting stomatal sensitivity to temperature and soil drought in mature alpine conifers

Conifers growing at high elevations need to optimize their stomatal conductance (g_s ) for maximizing photosynthetic yield while minimizing water loss under less favourable thermal conditions. Yet the ability of high-elevation conifers to adjust their g_s sensitivity to environmental drivers remains largely unexplored. We used 4 years of sap flow measurements to elucidate intraspecific and interspecific variability of g_s in Larix decidua Mill. and Picea abies (L.) Karst along an elevational gradient and contrasting soil moisture conditions. Site- and species-specific g_s response to main environmental drivers were examined, including vapour pressure deficit, air temperature, solar irradiance, and soil water potential. Our results indicate that maximum g_s of L. decidua is >2 times higher, shows a more plastic response to temperature, and down-regulates g_s stronger during atmospheric drought compared to P. abies. These differences allow L. decidua to exert more efficient water use, adjust to site-specific thermal conditions, and reduce water loss during drought episodes. The stronger plasticity of g_s sensitivity to temperature and higher conductance of L. decidua compared to P. abies provide new insights into species-specific water use strategies, which affect species' performance and should be considered when predicting terrestrial water dynamics under future climatic change.

A multi-model framework for the Arabidopsis life cycle

Linking our understanding of biological processes at different scales is a major conceptual challenge in biology and aggravated by differences in research methods. Modelling can be a useful approach to consolidating our understanding across traditional research domains. The laboratory model species Arabidopsis is very widely used to study plant growth processes and has also been tested more recently in ecophysiology and population genetics. However, approaches from crop modelling that might link these domains are rarely applied to Arabidopsis. Here, we combine plant growth models with phenology models from ecophysiology, using the agent-based modelling language Chromar. We introduce a simpler Framework Model of vegetative growth for Arabidopsis, FM-lite. By extending this model to include inflorescence and fruit growth and seed dormancy, we present a whole-life-cycle, multi-model FM-life, which allows us to simulate at the population level in various genotype × environment scenarios. Environmental effects on plant growth distinguish between the simulated life history strategies that were compatible with previously described Arabidopsis phenology. Our results simulate reproductive success that is founded on the broad range of physiological processes familiar from crop models and suggest an approach to simulating evolution directly in future.

Modelling carbon sources and sinks in terrestrial vegetation

Contents Summary 652 I. Introduction 652 II. Discrepancy in predicting the effects of rising [CO₂ ] on the terrestrial C sink 655 III. Carbon and nutrient storage in plants and its modelling 656 IV. Modelling the source and the sink: a plant perspective 657 V. Plant-scale water and Carbon flux models 660 VI. Challenges for the future 662 Acknowledgements 663 Authors contributions 663 References 663 SUMMARY: The increase in atmospheric CO₂ in the future is one of the most certain projections in environmental sciences. Understanding whether vegetation carbon assimilation, growth, and changes in vegetation carbon stocks are affected by higher atmospheric CO₂ and translating this understanding in mechanistic vegetation models is of utmost importance. This is highlighted by inconsistencies between global-scale studies that attribute terrestrial carbon sinks to CO₂ stimulation of gross and net primary production on the one hand, and forest inventories, tree-scale studies, and plant physiological evidence showing a much less pronounced CO₂ fertilization effect on the other hand. Here, we review how plant carbon sources and sinks are currently described in terrestrial biosphere models. We highlight an uneven representation of complexity between the modelling of photosynthesis and other processes, such as plant respiration, direct carbon sinks, and carbon allocation, largely driven by available observations. Despite a general lack of data on carbon sink dynamics to drive model improvements, ways forward toward a mechanistic representation of plant carbon sinks are discussed, leveraging on results obtained from plant-scale models and on observations geared toward model developments.