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Laskoś K, Czyczyło-Mysza IM, Waligórski P, Dziurka K, Skrzypek E, Warchoł M, Juzoń-Sikora K, Janowiak F, Dziurka M, Grzesiak MT, Grzesiak S, Quarrie S, Marcińska I. Characterising Biological and Physiological Drought Signals in Diverse Parents of a Wheat Mapping Population. Int J Mol Sci 2024; 25:6573. [PMID: 38928284 PMCID: PMC11203422 DOI: 10.3390/ijms25126573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 06/06/2024] [Accepted: 06/11/2024] [Indexed: 06/28/2024] Open
Abstract
Water deficit affects the growth as well as physiological and biochemical processes in plants. The aim of this study was to determine differences in physiological and biochemical responses to drought stress in two wheat cultivars-Chinese Spring (CS) and SQ1 (which are parents of a mapping population of doubled haploid lines)-and to relate these responses to final yield and agronomic traits. Drought stress was induced by withholding water for 14 days, after which plants were re-watered and maintained until harvest. Instantaneous gas exchange parameters were evaluated on the 3rd, 5th, 10th, and 14th days of seedling growth under drought. After 14 days, water content and levels of chlorophyll a+b, carotenoids, malondialdehyde, soluble carbohydrates, phenolics, salicylic acid, abscisic acid (ABA), and polyamines were measured. At final maturity, yield components (grain number and weight), biomass, straw weight, and harvest index were evaluated. Physiological and biochemical parameters of CS responded more than those of SQ1 to the 14-day drought, reflected in a greater reduction in final biomass and yield in CS. Marked biochemical differences between responses of CS and SQ1 to the drought were found for soluble carbohydrates and polyamines. These would be good candidates for testing in the mapping population for the coincidence of the genetic control of these traits and final biomass and yield.
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Affiliation(s)
- Kamila Laskoś
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239 Kraków, Poland; (K.L.); (P.W.); (K.D.); (E.S.); (M.W.); (K.J.-S.); (F.J.); (M.D.); (M.T.G.); (S.G.); (I.M.)
| | - Ilona Mieczysława Czyczyło-Mysza
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239 Kraków, Poland; (K.L.); (P.W.); (K.D.); (E.S.); (M.W.); (K.J.-S.); (F.J.); (M.D.); (M.T.G.); (S.G.); (I.M.)
| | - Piotr Waligórski
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239 Kraków, Poland; (K.L.); (P.W.); (K.D.); (E.S.); (M.W.); (K.J.-S.); (F.J.); (M.D.); (M.T.G.); (S.G.); (I.M.)
| | - Kinga Dziurka
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239 Kraków, Poland; (K.L.); (P.W.); (K.D.); (E.S.); (M.W.); (K.J.-S.); (F.J.); (M.D.); (M.T.G.); (S.G.); (I.M.)
| | - Edyta Skrzypek
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239 Kraków, Poland; (K.L.); (P.W.); (K.D.); (E.S.); (M.W.); (K.J.-S.); (F.J.); (M.D.); (M.T.G.); (S.G.); (I.M.)
| | - Marzena Warchoł
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239 Kraków, Poland; (K.L.); (P.W.); (K.D.); (E.S.); (M.W.); (K.J.-S.); (F.J.); (M.D.); (M.T.G.); (S.G.); (I.M.)
| | - Katarzyna Juzoń-Sikora
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239 Kraków, Poland; (K.L.); (P.W.); (K.D.); (E.S.); (M.W.); (K.J.-S.); (F.J.); (M.D.); (M.T.G.); (S.G.); (I.M.)
| | - Franciszek Janowiak
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239 Kraków, Poland; (K.L.); (P.W.); (K.D.); (E.S.); (M.W.); (K.J.-S.); (F.J.); (M.D.); (M.T.G.); (S.G.); (I.M.)
| | - Michał Dziurka
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239 Kraków, Poland; (K.L.); (P.W.); (K.D.); (E.S.); (M.W.); (K.J.-S.); (F.J.); (M.D.); (M.T.G.); (S.G.); (I.M.)
| | - Maciej T. Grzesiak
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239 Kraków, Poland; (K.L.); (P.W.); (K.D.); (E.S.); (M.W.); (K.J.-S.); (F.J.); (M.D.); (M.T.G.); (S.G.); (I.M.)
| | - Stanisław Grzesiak
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239 Kraków, Poland; (K.L.); (P.W.); (K.D.); (E.S.); (M.W.); (K.J.-S.); (F.J.); (M.D.); (M.T.G.); (S.G.); (I.M.)
| | - Steve Quarrie
- Faculty of Biology, University of Belgrade, Studentski trg 16, 11000 Belgrade, Serbia;
| | - Izabela Marcińska
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239 Kraków, Poland; (K.L.); (P.W.); (K.D.); (E.S.); (M.W.); (K.J.-S.); (F.J.); (M.D.); (M.T.G.); (S.G.); (I.M.)
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Raymundo R, Mclean G, Sexton-Bowser S, Lipka AE, Morris GP. Crop modeling suggests limited transpiration would increase yield of sorghum across drought-prone regions of the United States. FRONTIERS IN PLANT SCIENCE 2024; 14:1283339. [PMID: 38348164 PMCID: PMC10859530 DOI: 10.3389/fpls.2023.1283339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 12/21/2023] [Indexed: 02/15/2024]
Abstract
Breeding sorghum to withstand droughts is pivotal to secure crop production in regions vulnerable to water scarcity. Limited transpiration (LT) restricts water demand at high vapor pressure deficit, saving water for use in critical periods later in the growing season. Here we evaluated the hypothesis that LT would increase sorghum grain yield in the United States. We used a process-based crop model, APSIM, which simulates interactions of genotype, environment, and management (G × E × M). In this study, the G component includes the LT trait (GT) and maturity group (GM), the EW component entails water deficit patterns, and the MP component represents different planting dates. Simulations were conducted over 33 years (1986-2018) for representative locations across the US sorghum belt (Kansas, Texas, and Colorado) for three planting dates and maturity groups. The interaction of GT x EW indicated a higher impact of LT sorghum on grain for late drought (LD), mid-season drought (MD), and early drought (ED, 8%), than on well-watered (WW) environments (4%). Thus, significant impacts of LT can be achieved in western regions of the sorghum belt. The lack of interaction of GT × GM × MP suggested that an LT sorghum would increase yield by around 8% across maturity groups and planting dates. Otherwise, the interaction GM × MP revealed that specific combinations are better suited across geographical regions. Overall, the findings suggest that breeding for LT would increase sorghum yield in the drought-prone areas of the US without tradeoffs.
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Affiliation(s)
- Rubí Raymundo
- Department of Soil and Crop Science, Colorado State University, Fort Collins, CO, United States
| | - Greg Mclean
- Center for Crop Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Brisbane, QLD, Australia
| | - Sarah Sexton-Bowser
- Department of Agronomy, Kansas State University, Manhattan, KS, United States
| | - Alexander E. Lipka
- Department of Crop Sciences, University of Illinois, Urbana, IL, United States
| | - Geoffrey P. Morris
- Department of Soil and Crop Science, Colorado State University, Fort Collins, CO, United States
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Tunklová B, Šerá B, Šrámková P, Ďurčányová S, Šerý M, Kováčik D, Zahoranová A, Hnilička F. Growth Stimulation of Durum Wheat and Common Buckwheat by Non-Thermal Atmospheric Pressure Plasma. PLANTS (BASEL, SWITZERLAND) 2023; 12:4172. [PMID: 38140503 PMCID: PMC10748235 DOI: 10.3390/plants12244172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 12/12/2023] [Accepted: 12/13/2023] [Indexed: 12/24/2023]
Abstract
The grains of durum wheat (Triticum durum Desf.) and achenes of common buckwheat (Fagopyrum esculentum Moench) were tested after treatment with two sources of non-thermal atmospheric pressure plasma (DCSBD, MSDBD) with different treatment times (0, 3, 5, 10, 20, 30, and 40 s). The effect of these treatments was monitored with regard to the seed surface diagnostics (water contact angle-WCA, chemical changes by Fourier transform infrared spectroscopy-FTIR); twenty parameters associated with germination and initial seed growth were monitored. A study of the wettability confirmed a decrease in WCA values indicating an increase in surface energy and hydrophilicity depending on the type of seed, plasma source, and treatment time. Surface analysis by attenuated total reflectance FTIR (ATR-FTIR) showed no obvious changes in the chemical bonds on the surface of the plasma-treated seeds, which confirms the non-destructive effect of the plasma on the chemical composition of the seed shell. A multivariate analysis of the data showed many positive trends (not statistically significant) in germination and initial growth parameters. The repeated results for germination rate and root/shoot dry matter ratio indicate the tendency of plants to invest in underground organs. Durum wheat required longer treatment times with non-thermal plasma (10 s, 20 s) for germination and early growth, whereas buckwheat required shorter times (5 s, 10 s). The responses of durum wheat grains to the two non-thermal plasma sources used were equal. In contrast, the responses of buckwheat achenes were more favorable to MSDBD treatment than to DCSBD.
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Affiliation(s)
- Barbora Tunklová
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic; (B.T.); (F.H.)
| | - Božena Šerá
- Department of Environmental Ecology and Landscape Management, Faculty of Natural Sciences, Comenius University in Bratislava, Ilkovičova 6, 842 15 Bratislava, Slovakia
| | - Petra Šrámková
- Department of Experimental Physics, Faculty of Mathematics, Physics and Informatics, Comenius University in Bratislava, Mlynská Dolina, 842 48 Bratislava, Slovakia; (P.Š.); (S.Ď.); (A.Z.)
| | - Sandra Ďurčányová
- Department of Experimental Physics, Faculty of Mathematics, Physics and Informatics, Comenius University in Bratislava, Mlynská Dolina, 842 48 Bratislava, Slovakia; (P.Š.); (S.Ď.); (A.Z.)
| | - Michal Šerý
- Department of Physics, Faculty of Education, University of South Bohemia, Jeronýmova 10, 371 15 České Budějovice, Czech Republic;
| | - Dušan Kováčik
- Department of Experimental Physics, Faculty of Mathematics, Physics and Informatics, Comenius University in Bratislava, Mlynská Dolina, 842 48 Bratislava, Slovakia; (P.Š.); (S.Ď.); (A.Z.)
| | - Anna Zahoranová
- Department of Experimental Physics, Faculty of Mathematics, Physics and Informatics, Comenius University in Bratislava, Mlynská Dolina, 842 48 Bratislava, Slovakia; (P.Š.); (S.Ď.); (A.Z.)
| | - František Hnilička
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, 165 00 Prague, Czech Republic; (B.T.); (F.H.)
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Thakur V, Rane J, Pandey GC, Yadav S. Image facilitated assessment of intra-spike variation in grain size in wheat under high temperature and drought stress. Sci Rep 2023; 13:19850. [PMID: 37963937 PMCID: PMC10645968 DOI: 10.1038/s41598-023-44503-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Accepted: 10/09/2023] [Indexed: 11/16/2023] Open
Abstract
In wheat (Triticum aestivum L.), the grain size varies according to position within the spike. Exposure to drought and high temperature stress during grain development in wheat reduces grain size, and this reduction also varies across the length of the spike. We developed the phenomics approach involving image-based tools to assess the intra-spike variation in grain size. The grains were arranged corresponding to the spikelet position and the camera of smart phone was used to acquire 333 images. The open-source software ImageJ was used to analyze features of each grain and the image-derived parameters were used to calculate intra-spike variation as standard deviation (ISVAD). The effect of genotype and environment were highly significant on the ISVAD of grain area. Sunstar and Raj 4079 contrasted in the ISVAD of grain area under late sown environment, and RNA sequencing of the spike was done at 25 days after anthesis. The genes for carbohydrate transport and stress response were upregulated in Sunstar as compared to Raj 4079, suggesting that these play a role in intra-spike assimilate distribution. The phenomics method developed may be useful for grain phenotyping and identifying germplasm with low intra-spike variation in grain size for their further validation as parental material in breeding.
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Affiliation(s)
- Vidisha Thakur
- Department of Bioscience & Biotechnology, Banasthali Vidyapith, Banasthali, Rajasthan, 304 022, India
| | - Jagadish Rane
- ICAR-Central Institute for Arid Horticulture, Bikaner, Rajasthan, 334006, India.
| | - Girish Chandra Pandey
- Department of Bioscience & Biotechnology, Banasthali Vidyapith, Banasthali, Rajasthan, 304 022, India
| | - Satish Yadav
- ICAR-Directorate of Onion and Garlic Research, Rajgurunagar, Pune, 410 505, India
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Lago-Olveira S, Rebolledo-Leiva R, Garofalo P, Moreira MT, González-García S. Environmental and economic benefits of wheat and chickpea crop rotation in the Mediterranean region of Apulia (Italy). THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 896:165124. [PMID: 37364835 DOI: 10.1016/j.scitotenv.2023.165124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 05/26/2023] [Accepted: 06/23/2023] [Indexed: 06/28/2023]
Abstract
Wheat plays an essential role in safeguarding global food security. However, its intensive agricultural production, aimed at maximizing crop yields and associated economic benefits, jeopardizes many ecosystem services and the economic stability of farmers. Rotations with leguminous are recognized as a promising strategy in favor of sustainable agriculture. However, not all crop rotations are suitable for promoting sustainability and their implications on agricultural soil and crop quality should be carefully analyzed. This research aims to demonstrate the environmental and economic benefits of introducing chickpea into a wheat-based system under Mediterranean pedo-climatic conditions. For this purpose, the crop rotation "wheat-chickpea" was evaluated and compared with the conventional regime (wheat monoculture) by means of life cycle assessment methodology. For this purpose, inventory data (e.g., agrochemical doses, machinery, energy consumption, production yield, among others) was compiled for each crop and cropping system, thus converted into environmental impacts based on two functional units: 1 ha per year and one € of gross margin. Eleven environmental indicators were analyzed, including soil quality and biodiversity loss. Results indicate that chickpea-wheat rotation system offers lower environmental impacts, regardless of the functional unit considered. Global warming (18 %) and freshwater ecotoxicity (20 %) were the categories with the largest reductions. Furthermore, a remarkable increase (96 %) in gross margin was observed with the rotation system, due to the low cost of chickpea cultivation and its higher market price. Nevertheless, proper fertilizer management remains essential to fully attain the environmental benefits of crop rotation with legumes.
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Affiliation(s)
- Sara Lago-Olveira
- CRETUS, Department of Chemical Engineering, School of Engineering, University of Santiago de Compostela, 15782 Santiago de Compostela, Spain.
| | - Ricardo Rebolledo-Leiva
- CRETUS, Department of Chemical Engineering, School of Engineering, University of Santiago de Compostela, 15782 Santiago de Compostela, Spain
| | - Pasquale Garofalo
- Council for Agricultural Research and Economics, Research Center for Agriculture and Environment, Via Celso Ulpiani 5, 70125 Bari, Italy
| | - Maria Teresa Moreira
- CRETUS, Department of Chemical Engineering, School of Engineering, University of Santiago de Compostela, 15782 Santiago de Compostela, Spain
| | - Sara González-García
- CRETUS, Department of Chemical Engineering, School of Engineering, University of Santiago de Compostela, 15782 Santiago de Compostela, Spain
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Chatara T, Musvosvi C, Houdegbe A, Tesfay SZ, Sibiya J. Morpho-physiological and biochemical characterization of African spider plant ( Gynandropsis gynandra (L.) Briq.) genotypes under drought and non-drought conditions. FRONTIERS IN PLANT SCIENCE 2023; 14:1197462. [PMID: 37662144 PMCID: PMC10469808 DOI: 10.3389/fpls.2023.1197462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 07/13/2023] [Indexed: 09/05/2023]
Abstract
The African spider plant (Gynandropsis gynandra (L.) Briq.) is a nutrient-dense, climate-resilient indigenous vegetable with a C4 carbon fixation pathway. Understanding African spider plant drought tolerance mechanisms is essential for improving its performance in water-stressed areas. The objective of this study was to evaluate the stress tolerance potential of African spider plant accessions based on thirteen morphological, physiological, and biochemical traits under three different water treatment regimes. Eighteen accessions were evaluated over two growing seasons in the greenhouse using a split-split plot design with four replications and three water treatment-regimes namely optimum (100% field capacity), intermediate drought (50% field capacity) and, severe drought (30% field capacity). The results revealed that water regime had a significant effect (P< 0.01) on the accessions for the traits studied. A significant reduction across most of the studied traits was observed under drought conditions. However, proline content in all the accessions significantly rose under drought conditions. The principal component analysis revealed a considerable difference in the performance of the 18 African spider plant accessions under optimum and drought stress conditions. Several morphological and physiological parameters, including days to 50% flowering (r = 0.80), leaf length (r = 0.72), net photosynthesis (r = 0.76) and number of leaves per plant (r = 0.79), were positively associated with leaf yield under drought conditions. Cluster analysis categorized the 18 accessions and 13 measured parameters into 4 clusters, with cluster-1 exhibiting greater drought tolerance for most of the studied traits, and cluster-4 having the most drought-sensitive accessions. Among the accessions tested, accessions L3 and L5 demonstrated excellent drought tolerance and yield performance under both conditions. As a result, these accessions were selected as candidates for African spider plant drought tolerance breeding programs. These findings will serve as the foundation for future studies and will aid in improving food and nutrition security in the face of drought.
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Affiliation(s)
- Tinashe Chatara
- School of Agriculture, Earth and Environmental Sciences, University of KwaZulu-Natal, Pietermaritzburg, South Africa
| | - Cousin Musvosvi
- School of Agricultural Sciences and Technology, Chinhoyi University of Technology, Chinhoyi, Zimbabwe
| | - Aristide Carlos Houdegbe
- School of Agriculture, Earth and Environmental Sciences, University of KwaZulu-Natal, Pietermaritzburg, South Africa
- Genetics, Biotechnology and Seed Science Unit (GBioS), Laboratory of Crop Production, Physiology and Plant Breeding, Faculty of Agronomic Sciences, University of Abomey-Calavi, Abomey-Calavi, Benin
| | - Samson Zeray Tesfay
- School of Agriculture, Earth and Environmental Sciences, University of KwaZulu-Natal, Pietermaritzburg, South Africa
| | - Julia Sibiya
- School of Agriculture, Earth and Environmental Sciences, University of KwaZulu-Natal, Pietermaritzburg, South Africa
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Bao X, Hou X, Duan W, Yin B, Ren J, Wang Y, Liu X, Gu L, Zhen W. Screening and evaluation of drought resistance traits of winter wheat in the North China Plain. FRONTIERS IN PLANT SCIENCE 2023; 14:1194759. [PMID: 37396647 PMCID: PMC10313073 DOI: 10.3389/fpls.2023.1194759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 05/02/2023] [Indexed: 07/04/2023]
Abstract
Background Drought-resistant varieties are an important way to address the conflict between wheat's high water demand and the scarcity of water resources in the North China Plain (NCP). Drought stress impacts many morphological and physiological indicators in winter wheat. To increase the effectiveness of breeding drought-tolerant varieties, choosing indices that can accurately indicate a variety's drought resistance is advantageous. Results From 2019 to 2021, 16 representative winter wheat cultivars were cultivated in the field, and 24 traits, including morphological, photosynthetic, physiological, canopy, and yield component traits, were measured to evaluate the drought tolerance of the cultivars. Principal component analysis (PCA) was used to transform 24 conventional traits into 7 independent, comprehensive indices, and 10 drought tolerance indicators were screened out by regression analysis. The 10 drought tolerance indicators were plant height (PH), spike number (SN), spikelet per spike(SP), canopy temperature (CT), leaf water content (LWC), photosynthetic rate (A), intercellular CO2 concentration (Ci), peroxidase activity (POD), malondialdehyde content (MDA), and abscisic acid (ABA). In addition, through membership function and cluster analysis, 16 wheat varieties were divided into 3 categories: drought-resistant, drought weak sensitive, and drought-sensitive. Conclusion JM418, HM19,SM22, H4399, HG35, and GY2018 exhibited excellent drought tolerance and,therefore, can be used as ideal references to study the drought tolerance mechanism in wheat and breeding drought-tolerant wheat cultivars.
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Affiliation(s)
- Xiaoyuan Bao
- College of Agronomy, Hebei Agricultural University, Baoding, China
- Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs, Baoding, China
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
| | - Xiaoyang Hou
- College of Agronomy, Hebei Agricultural University, Baoding, China
| | - Weiwei Duan
- College of Agronomy, Hebei Agricultural University, Baoding, China
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
| | - Baozhong Yin
- Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs, Baoding, China
| | - Jianhong Ren
- College of Agronomy, Hebei Agricultural University, Baoding, China
| | - Yandong Wang
- College of Agronomy, Hebei Agricultural University, Baoding, China
| | - Xuejing Liu
- College of Agronomy, Hebei Agricultural University, Baoding, China
- College of Clinical Medicine, North China University of Science and Technology, Tangshan, China
| | - Limin Gu
- College of Agronomy, Hebei Agricultural University, Baoding, China
- Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs, Baoding, China
| | - Wenchao Zhen
- College of Agronomy, Hebei Agricultural University, Baoding, China
- Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs, Baoding, China
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
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8
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Liu Q, Zhao Y, Rahman S, She M, Zhang J, Yang R, Islam S, O'Hara G, Varshney RK, Liu H, Ma H, Ma W. The putative vacuolar processing enzyme gene TaVPE3cB is a candidate gene for wheat stem pith-thickness. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2023; 136:138. [PMID: 37233825 DOI: 10.1007/s00122-023-04372-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 04/27/2023] [Indexed: 05/27/2023]
Abstract
KEY MESSAGE The vacuolar processing enzyme gene TaVPE3cB is identified as a candidate gene for a QTL of wheat pith-thickness on chromosome 3B by BSR-seq and differential expression analyses. The high pith-thickness (PT) of the wheat stem could greatly enhance stem mechanical strength, especially the basal internodes which support the heavier upper part, such as upper stems, leaves and spikes. A QTL for PT in wheat was previously discovered on 3BL in a double haploid population of 'Westonia' × 'Kauz'. Here, a bulked segregant RNA-seq analysis was applied to identify candidate genes and develop associated SNP markers for PT. In this study, we aimed at screening differentially expressed genes (DEGs) and SNPs in the 3BL QTL interval. Sixteen DEGs were obtained based on BSR-seq and differential expression analyses. Twenty-four high-probability SNPs in eight genes were identified by comparing the allelic polymorphism in mRNA sequences between the high PT and low PT samples. Among them, six genes were confirmed to be associated with PT by qRT-PCR and sequencing. A putative vacuolar processing enzyme gene TaVPE3cB was screened out as a potential PT candidate gene in Australian wheat 'Westonia'. A robust SNP marker associated with TaVPE3cB was developed, which can assist in the introgression of TaVPE3cB.b in wheat breeding programs. In addition, we also discussed the function of other DEGs which may be related to pith development and programmed cell death (PCD). A five-level hierarchical regulation mechanism of stem pith PCD in wheat was proposed.
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Affiliation(s)
- Qier Liu
- Centre for Crop and Food Innovation, Food Futures Institute and College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, 6150, Australia
- Provincial Key Laboratory of Agrobiology, and Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, People's Republic of China
| | - Yun Zhao
- Centre for Crop and Food Innovation, Food Futures Institute and College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, 6150, Australia
- Institute of Cereal and Oil Crops, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang, 050035, People's Republic of China
| | - Shanjida Rahman
- Centre for Crop and Food Innovation, Food Futures Institute and College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, 6150, Australia
| | - Maoyun She
- Centre for Crop and Food Innovation, Food Futures Institute and College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, 6150, Australia
| | - Jingjuan Zhang
- Centre for Crop and Food Innovation, Food Futures Institute and College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, 6150, Australia
| | - Rongchang Yang
- Centre for Crop and Food Innovation, Food Futures Institute and College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, 6150, Australia
| | - Shahidul Islam
- Centre for Crop and Food Innovation, Food Futures Institute and College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, 6150, Australia
| | - Graham O'Hara
- Centre for Crop and Food Innovation, Food Futures Institute and College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, 6150, Australia
| | - Rajeev K Varshney
- Centre for Crop and Food Innovation, Food Futures Institute and College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, 6150, Australia
| | - Hang Liu
- Centre for Crop and Food Innovation, Food Futures Institute and College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, 6150, Australia
| | - Hongxiang Ma
- Provincial Key Laboratory of Agrobiology, and Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, People's Republic of China
| | - Wujun Ma
- Centre for Crop and Food Innovation, Food Futures Institute and College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, 6150, Australia.
- College of Agronomy, Qingdao Agriculture University, Qingdao, 266109, People's Republic of China.
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Kumar S, Kumar H, Gupta V, Kumar A, Singh CM, Kumar M, Singh AK, Panwar GS, Kumar S, Singh AK, Kumar R. Capturing agro-morphological variability for tolerance to terminal heat and combined heat-drought stress in landraces and elite cultivar collection of wheat. FRONTIERS IN PLANT SCIENCE 2023; 14:1136455. [PMID: 37251757 PMCID: PMC10214469 DOI: 10.3389/fpls.2023.1136455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Accepted: 04/05/2023] [Indexed: 05/31/2023]
Abstract
Climate change has resulted in extreme temperature and drought around the globe, which poses serious threat to food security. Both heat and drought stress affects the production and productivity of wheat crop. The present study was undertaken to evaluate 34 landraces and elite cultivars of Triticum spp. for phenological and yield-related traits under optimum, heat, and combined heat-drought stress environments during 2020-2021 and 2021-2022. The pooled analysis of variance showed significant genotype × environment interaction, suggesting an influence of stress on trait expression. The trait performance of genotypes exhibited significant reduction under combined heat-drought stress as compared to optimum and heat stress environments. The maximum seed yield penalty was observed under combined heat-drought stress environment as compared to heat stress alone. Regression analysis indicated significant contribution of number of grains per spike towards stress tolerance. Based on Stress Tolerance Index (STI), genotypes Local-17, PDW 274, HI-8802, and HI-8713 were identified to be tolerant to both heat and combined heat and drought stress at Banda, whereas genotypes DBW 187, HI-8777, Raj 4120, and PDW 274 were tolerant at Jhansi location. The genotype PDW 274 showed stress tolerance under all treatments at both the locations. The genotypes PDW 233 and PDW 291 showed highest stress susceptibility index (SSI) across the environments. The number of grains per spike and test kernel weight were positively associated with seed yield across the environments and locations. The selected genotypes Local-17, HI 8802, and PDW 274 were identified to be the potential sources of heat and combined heat-drought tolerance, which may be utilized in hybridization to develop tolerant wheat genotypes and also for mapping of underlying genes/quantitative trait loci (QTLs).
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Affiliation(s)
- Shubham Kumar
- Department of Genetics and Plant Breeding, Banda University of Agriculture and Technology, Banda, India
| | - Hitesh Kumar
- Department of Genetics and Plant Breeding, Banda University of Agriculture and Technology, Banda, India
| | - Vikas Gupta
- Crop Improvement Division, Indian Council of Agricultural Research (ICAR)-Indian Institute of Wheat and Barley Research, Karnal, India
| | - Adesh Kumar
- Krishi Vigyan Kendra, Jhansi, Banda University of Agriculture and Technology, Banda, India
| | - Chandra Mohan Singh
- Department of Genetics and Plant Breeding, Banda University of Agriculture and Technology, Banda, India
| | - Mukul Kumar
- Department of Genetics and Plant Breeding, Banda University of Agriculture and Technology, Banda, India
| | - Ajay Kumar Singh
- Department of Genetics and Plant Breeding, Banda University of Agriculture and Technology, Banda, India
| | - Gurusharan Singh Panwar
- Department of Genetics and Plant Breeding, Banda University of Agriculture and Technology, Banda, India
| | - Sujit Kumar
- Uttar Pradesh (UP) Council of Agricultural Research, Lucknow, India
| | - Akhilesh Kumar Singh
- Department of Genetics and Plant Breeding, Banda University of Agriculture and Technology, Banda, India
| | - Rahul Kumar
- Department of Plant Science and Landscape Architecture, University of Connecticut, Storrs, CT, United States
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10
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Das A, Dedon N, Enders DJ, Fjellheim S, Preston JC. Testing the chilling- before drought-tolerance hypothesis in Pooideae grasses. Mol Ecol 2023; 32:772-785. [PMID: 36420966 PMCID: PMC10107940 DOI: 10.1111/mec.16794] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 11/16/2022] [Accepted: 11/22/2022] [Indexed: 11/25/2022]
Abstract
Temperate Pooideae are a large clade of economically important grasses distributed in some of the Earth's coldest and driest terrestrial environments. Previous studies have inferred that Pooideae diversified from their tropical ancestors in a cold montane habitat, suggesting that above-freezing cold (chilling) tolerance evolved early in the subfamily. By contrast, drought tolerance is hypothesized to have evolved multiple times independently in response to global aridification that occurred after the split of Pooideae tribes. To independently test predictions of the chilling-before-drought hypothesis in Pooideae, we assessed conservation of whole plant and gene expression traits in response to chilling vs. drought. We demonstrated that both trait responses are more similar across tribes in cold as compared to drought, suggesting that chilling responses evolved before, and drought responses after, tribe diversification. Moreover, we found significantly more overlap between drought and chilling responsive genes within a species than between drought responsive genes across species, providing evidence that chilling tolerance genes acted as precursors for the novel acquisition of increased drought tolerance multiple times independently, partially through the cooption of chilling responsive genes.
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Affiliation(s)
- Aayudh Das
- Department of Plant Biology, The University of Vermont, Burlington, Vermont, USA
| | - Natalie Dedon
- Department of Plant Biology, The University of Vermont, Burlington, Vermont, USA
| | - Daniel J Enders
- Department of Plant Biology, The University of Vermont, Burlington, Vermont, USA
| | - Siri Fjellheim
- Department of Plant Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, Ås, Norway
| | - Jill C Preston
- Department of Plant Biology, The University of Vermont, Burlington, Vermont, USA
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11
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James C, Gu Y, Potgieter A, David E, Madec S, Guo W, Baret F, Eriksson A, Chapman S. From Prototype to Inference: A Pipeline to Apply Deep Learning in Sorghum Panicle Detection. PLANT PHENOMICS (WASHINGTON, D.C.) 2023; 5:0017. [PMID: 37040294 PMCID: PMC10076054 DOI: 10.34133/plantphenomics.0017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Accepted: 12/01/2022] [Indexed: 06/19/2023]
Abstract
Head (panicle) density is a major component in understanding crop yield, especially in crops that produce variable numbers of tillers such as sorghum and wheat. Use of panicle density both in plant breeding and in the agronomy scouting of commercial crops typically relies on manual counts observation, which is an inefficient and tedious process. Because of the easy availability of red-green-blue images, machine learning approaches have been applied to replacing manual counting. However, much of this research focuses on detection per se in limited testing conditions and does not provide a general protocol to utilize deep-learning-based counting. In this paper, we provide a comprehensive pipeline from data collection to model deployment in deep-learning-assisted panicle yield estimation for sorghum. This pipeline provides a basis from data collection and model training, to model validation and model deployment in commercial fields. Accurate model training is the foundation of the pipeline. However, in natural environments, the deployment dataset is frequently different from the training data (domain shift) causing the model to fail, so a robust model is essential to build a reliable solution. Although we demonstrate our pipeline in a sorghum field, the pipeline can be generalized to other grain species. Our pipeline provides a high-resolution head density map that can be utilized for diagnosis of agronomic variability within a field, in a pipeline built without commercial software.
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Affiliation(s)
- Chrisbin James
- School of Agriculture and Food Sciences, The University of Queensland, Brisbane, Australia
| | - Yanyang Gu
- School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Australia
| | - Andries Potgieter
- Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Brisbane, Australia
| | | | | | - Wei Guo
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Frédéric Baret
- Institut National de la Recherche Agronomique, Paris, France
| | - Anders Eriksson
- School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Australia
| | - Scott Chapman
- School of Agriculture and Food Sciences, The University of Queensland, Brisbane, Australia
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12
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Poggi GM, Corneti S, Aloisi I, Ventura F. Environment-oriented selection criteria to overcome controversies in breeding for drought resistance in wheat. JOURNAL OF PLANT PHYSIOLOGY 2023; 280:153895. [PMID: 36529076 DOI: 10.1016/j.jplph.2022.153895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 11/17/2022] [Accepted: 12/05/2022] [Indexed: 06/17/2023]
Abstract
Wheat is one of the most important cereal crops, representing a fundamental source of calories and protein for the global human population. Drought stress (DS) is a widespread phenomenon, already affecting large wheat-growing areas worldwide, and a major threat for cereal productivity, resulting in consistent losses in average grain yield (GY). Climate change is projected to exacerbate DS incidence and severity by increasing temperatures and changing rainfall patterns. Estimating that wheat production has to substantially increase to guarantee food security to a demographically expanding human population, the need for breeding programs focused on improving wheat drought resistance is manifest. Drought occurrence, in terms of time of appearance, duration, frequency, and severity, along the plant's life cycle varies significantly among different environments and different agricultural years, making it difficult to identify reliable phenological, morphological, and functional traits to be used as effective breeding tools. The situation is further complicated by the presence of confounding factors, e.g., other concomitant abiotic stresses, in an open-field context. Consequently, the relationship between morpho-functional traits and GY under water deficit is often contradictory; moreover, controversies have emerged not only on which traits are to be preferred, but also on how one specific trait should be desired. In this review, we attempt to identify the possible causes of these disputes and propose the most suitable selection criteria in different target environments and, thus, the best trait combinations for breeders in different drought contexts. In fact, an environment-oriented approach could be a valuable solution to overcome controversies in identifying the proper selection criteria for improving wheat drought resistance.
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Affiliation(s)
- Giovanni Maria Poggi
- Department of Biological, Geological and Environmental Sciences (BiGeA), Alma Mater Studiorum, University of Bologna, Bologna, Italy; Department of Agricultural and Food Sciences (DISTAL), Alma Mater Studiorum, University of Bologna, Bologna, Italy
| | - Simona Corneti
- Department of Biological, Geological and Environmental Sciences (BiGeA), Alma Mater Studiorum, University of Bologna, Bologna, Italy
| | - Iris Aloisi
- Department of Biological, Geological and Environmental Sciences (BiGeA), Alma Mater Studiorum, University of Bologna, Bologna, Italy.
| | - Francesca Ventura
- Department of Agricultural and Food Sciences (DISTAL), Alma Mater Studiorum, University of Bologna, Bologna, Italy
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13
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Productivity and Feed Quality Performance of Napier Grass (Cenchrus purpureus) Genotypes Growing under Different Soil Moisture Levels. PLANTS 2022; 11:plants11192549. [PMID: 36235418 PMCID: PMC9572638 DOI: 10.3390/plants11192549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 09/18/2022] [Accepted: 09/20/2022] [Indexed: 11/17/2022]
Abstract
In the semi-arid and arid environments of Sub-Sharan Africa, forage availability throughout the year is insufficient and highly limited during the dry seasons due to limited precipitation. Thus, the identification of drought stress-tolerant forage cultivars is one of the main activities in forage development programs. In this study, Napier grass (Cenchrus purpureus), an important forage crop in Eastern and Central Africa that is broadly adapted to produce across tropical environments, was evaluated for its water use efficiency and production performance under field drought stress conditions. Eighty-four Napier grass genotypes were evaluated for their drought stress tolerance from 2018 to 2020 using agro-morphological and feed quality traits under two soil moisture stress regimes during the dry season, i.e., moderate (MWS) and severe (SWS) water stress conditions, and under rainfed conditions in the wet season (wet). Overall, the results indicated the existence of genotype variation for the traits studied. In general, the growth and productivity of the genotypes declined under SWS compared to MWS conditions. High biomass-yielding genotypes with enhanced WUE were consistently observed across harvests in each soil moisture stress regime. In addition, the top biomass-yielding genotypes produced the highest annual crude protein yield, indicating the possibility of developing high-feed-quality Napier grass genotypes for drought stress environments.
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14
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Bapela T, Shimelis H, Tsilo TJ, Mathew I. Genetic Improvement of Wheat for Drought Tolerance: Progress, Challenges and Opportunities. PLANTS (BASEL, SWITZERLAND) 2022; 11:1331. [PMID: 35631756 PMCID: PMC9144332 DOI: 10.3390/plants11101331] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 04/27/2022] [Accepted: 05/04/2022] [Indexed: 06/01/2023]
Abstract
Wheat production and productivity are challenged by recurrent droughts associated with climate change globally. Drought and heat stress resilient cultivars can alleviate yield loss in marginal production agro-ecologies. The ability of some crop genotypes to thrive and yield in drought conditions is attributable to the inherent genetic variation and environmental adaptation, presenting opportunities to develop drought-tolerant varieties. Understanding the underlying genetic, physiological, biochemical, and environmental mechanisms and their interactions is key critical opportunity for drought tolerance improvement. Therefore, the objective of this review is to document the progress, challenges, and opportunities in breeding for drought tolerance in wheat. The paper outlines the following key aspects: (1) challenges associated with breeding for adaptation to drought-prone environments, (2) opportunities such as genetic variation in wheat for drought tolerance, selection methods, the interplay between above-ground phenotypic traits and root attributes in drought adaptation and drought-responsive attributes and (3) approaches, technologies and innovations in drought tolerance breeding. In the end, the paper summarises genetic gains and perspectives in drought tolerance breeding in wheat. The review will serve as baseline information for wheat breeders and agronomists to guide the development and deployment of drought-adapted and high-performing new-generation wheat varieties.
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Affiliation(s)
- Theresa Bapela
- African Centre for Crop Improvement, University of Kwa-Zulu Natal, Private Bag X01, Scottsville, Pietermaritzburg 3209, South Africa; (H.S.); (I.M.)
- Agricultural Research Council—Small Grain, Bethlehem 9700, South Africa;
| | - Hussein Shimelis
- African Centre for Crop Improvement, University of Kwa-Zulu Natal, Private Bag X01, Scottsville, Pietermaritzburg 3209, South Africa; (H.S.); (I.M.)
| | - Toi John Tsilo
- Agricultural Research Council—Small Grain, Bethlehem 9700, South Africa;
| | - Isack Mathew
- African Centre for Crop Improvement, University of Kwa-Zulu Natal, Private Bag X01, Scottsville, Pietermaritzburg 3209, South Africa; (H.S.); (I.M.)
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15
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Bennani S, Birouk A, Jlibene M, Sanchez-Garcia M, Nsarellah N, Gaboun F, Tadesse W. Drought-Tolerance QTLs Associated with Grain Yield and Related Traits in Spring Bread Wheat. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11070986. [PMID: 35406966 PMCID: PMC9002858 DOI: 10.3390/plants11070986] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 03/03/2022] [Accepted: 03/14/2022] [Indexed: 06/12/2023]
Abstract
The present research aims to identify the efficient combination of drought-tolerance selection criteria and associated quantitative trait loci. A panel of 197 bread wheat genotypes was evaluated for yield- and drought-tolerance-related traits in two environments (favorable and semiarid) for 2 years (2015-2016). Grain number, biomass, number of fertile spikes per plant and ground cover exhibited a significant correlation with grain yield and constitute potential secondary selection criteria for yield under drought conditions. About 73 significant marker-trait associations were detected along various chromosomal positions. The markers "wsnp_Ex_Rep_c67786_66472676" and "ExcalibuR_c24593_1217" exhibited important genetic gains associated with yield increase under drought (11 and 7%, respectively). The markers "KukRi_c94792_127" and "wsnp_Ex_c298_580660" showed a significant correlation with grain yield, biomass and grain number and were associated with a significant increase in yield performance at the semiarid site (+6 and +7%, respectively). The ground cover was found associated with grain yield and biomass through the markers "wsnp_Ex_Rep_c67786_66472676" (+11%) and "KukRi_c49927_151" (+10%). One marker "TduRuM_contig25432_1377" on chromosome 5B at 20 cM was consistently correlated with the number of fertile spikes across both environments. Further research should be considered to validate the efficiency of these markers to undertake selection for drought tolerance under various environments and genetic backgrounds.
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Affiliation(s)
- Sahar Bennani
- Plant Breeding and Conservation of Phytogenetic Genetic Resources Department, National Institute of Agricultural Research, Rabat 10101, Morocco;
| | - Ahmed Birouk
- Department of Production, Protection and Biotechnology of Plants, Agronomy and Veterinary Hassan II Institute, Rabat 10101, Morocco;
| | - Mohammed Jlibene
- National Federation of Milling, Casablanca 20000, Morocco; (M.J.); (N.N.)
| | - Miguel Sanchez-Garcia
- Biodiversity and Crop Improvement Program, International Center for Agricultural Research in the Dry Areas, Rabat 10101, Morocco; (M.S.-G.); (W.T.)
| | | | - Fatima Gaboun
- Plant Breeding and Conservation of Phytogenetic Genetic Resources Department, National Institute of Agricultural Research, Rabat 10101, Morocco;
| | - Wuletaw Tadesse
- Biodiversity and Crop Improvement Program, International Center for Agricultural Research in the Dry Areas, Rabat 10101, Morocco; (M.S.-G.); (W.T.)
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16
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Tafesse EG, Gali KK, Lachagari VBR, Bueckert R, Warkentin TD. Genome-Wide Association Mapping for Heat and Drought Adaptive Traits in Pea. Genes (Basel) 2021; 12:1897. [PMID: 34946846 PMCID: PMC8701326 DOI: 10.3390/genes12121897] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 11/24/2021] [Accepted: 11/25/2021] [Indexed: 01/09/2023] Open
Abstract
Heat and drought, individually or in combination, limit pea productivity. Fortunately, substantial genetic diversity exists in pea germplasm for traits related to abiotic stress resistance. Understanding the genetic basis of resistance could accelerate the development of stress-adaptive cultivars. We conducted a genome-wide association study (GWAS) in pea on six stress-adaptive traits with the aim to detect the genetic regions controlling these traits. One hundred and thirty-five genetically diverse pea accessions were phenotyped in field studies across three or five environments under stress and control conditions. To determine marker trait associations (MTAs), a total of 16,877 valuable single nucleotide polymorphisms (SNPs) were used in association analysis. Association mapping detected 15 MTAs that were significantly (p ≤ 0.0005) associated with the six stress-adaptive traits averaged across all environments and consistent in multiple individual environments. The identified MTAs were four for lamina wax, three for petiole wax, three for stem thickness, two for the flowering duration, one for the normalized difference vegetation index (NDVI), and two for the normalized pigment and chlorophyll index (NPCI). Sixteen candidate genes were identified within a 15 kb distance from either side of the markers. The detected MTAs and candidate genes have prospective use towards selecting stress-hardy pea cultivars in marker-assisted selection.
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Affiliation(s)
- Endale G. Tafesse
- Department of Plant Sciences, College of Agriculture and Bio-Resources, University of Saskatchewan, Saskatoon, SK S7N5A8, Canada; (E.G.T.); (K.K.G.); (R.B.)
| | - Krishna K. Gali
- Department of Plant Sciences, College of Agriculture and Bio-Resources, University of Saskatchewan, Saskatoon, SK S7N5A8, Canada; (E.G.T.); (K.K.G.); (R.B.)
| | | | - Rosalind Bueckert
- Department of Plant Sciences, College of Agriculture and Bio-Resources, University of Saskatchewan, Saskatoon, SK S7N5A8, Canada; (E.G.T.); (K.K.G.); (R.B.)
| | - Thomas D. Warkentin
- Department of Plant Sciences, College of Agriculture and Bio-Resources, University of Saskatchewan, Saskatoon, SK S7N5A8, Canada; (E.G.T.); (K.K.G.); (R.B.)
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17
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Das A, Prakash A, Dedon N, Doty A, Siddiqui M, Preston JC. Variation in climatic tolerance, but not stomatal traits, partially explains Pooideae grass species distributions. ANNALS OF BOTANY 2021; 128:83-95. [PMID: 33772589 PMCID: PMC8318108 DOI: 10.1093/aob/mcab046] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2021] [Accepted: 03/24/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND AND AIMS Grasses in subfamily Pooideae live in some of the world's harshest terrestrial environments, from frigid boreal zones to the arid windswept steppe. It is hypothesized that the climate distribution of species within this group is driven by differences in climatic tolerance, and that tolerance can be partially explained by variation in stomatal traits. METHODS We determined the aridity index (AI) and minimum temperature of the coldest month (MTCM) for 22 diverse Pooideae accessions and one outgroup, and used comparative methods to assess predicted relationships for climate traits versus fitness traits, stomatal diffusive conductance to water (gw) and speed of stomatal closure following drought and/or cold. KEY RESULTS Results demonstrate that AI and MTCM predict variation in survival/regreening following drought/cold, and gw under drought/cold is positively correlated with δ 13C-measured water use efficiency (WUE). However, the relationship between climate traits and fitness under drought/cold was not explained by gw or speed of stomatal closure. CONCLUSIONS These findings suggest that Pooideae distributions are at least partly determined by tolerance to aridity and above-freezing cold, but that variation in tolerance is not uniformly explained by variation in stomatal traits.
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Affiliation(s)
- Aayudh Das
- The University of Vermont, Department of Plant Biology, Burlington, VT 05405, USA
| | - Anoob Prakash
- The University of Vermont, Department of Plant Biology, Burlington, VT 05405, USA
| | - Natalie Dedon
- The University of Vermont, Department of Plant Biology, Burlington, VT 05405, USA
| | - Alex Doty
- The University of Vermont, Department of Plant Biology, Burlington, VT 05405, USA
| | - Muniba Siddiqui
- The University of Vermont, Department of Plant Biology, Burlington, VT 05405, USA
| | - Jill C Preston
- The University of Vermont, Department of Plant Biology, Burlington, VT 05405, USA
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18
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Danakumara T, Kumari J, Singh AK, Sinha SK, Pradhan AK, Sharma S, Jha SK, Bansal R, Kumar S, Jha GK, Yadav MC, Prasad PV. Genetic Dissection of Seedling Root System Architectural Traits in a Diverse Panel of Hexaploid Wheat through Multi-Locus Genome-Wide Association Mapping for Improving Drought Tolerance. Int J Mol Sci 2021; 22:7188. [PMID: 34281242 PMCID: PMC8268147 DOI: 10.3390/ijms22137188] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Revised: 06/27/2021] [Accepted: 06/28/2021] [Indexed: 11/25/2022] Open
Abstract
Cultivars with efficient root systems play a major role in enhancing resource use efficiency, particularly water absorption, and thus in drought tolerance. In this study, a diverse wheat association panel of 136 wheat accessions including mini core subset was genotyped using Axiom 35k Breeders' Array to identify genomic regions associated with seedling stage root architecture and shoot traits using multi-locus genome-wide association studies (ML-GWAS). The association panel revealed a wide variation of 1.5- to 50-fold and were grouped into six clusters based on 15 traits. Six different ML-GWAS models revealed 456 significant quantitative trait nucleotides (QTNs) for various traits with phenotypic variance in the range of 0.12-38.60%. Of these, 87 QTNs were repeatedly detected by two or more models and were considered reliable genomic regions for the respective traits. Among these QTNs, eleven were associated with average diameter and nine each for second order lateral root number (SOLRN), root volume (RV) and root length density (RLD). A total of eleven genomic regions were pleiotropic and each controlled two or three traits. Some important candidate genes such as Formin homology 1, Ubiquitin-like domain superfamily and ATP-dependent 6-phosphofructokinase were identified from the associated genomic regions. The genomic regions/genes identified in this study could potentially be targeted for improving root traits and drought tolerance in wheat.
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Affiliation(s)
- Thippeswamy Danakumara
- Division of Genetics, Indian Council of Agricultural Research (ICAR)—Indian Agricultural Research Institute, New Delhi 110012, India; (T.D.); (S.K.J.)
| | - Jyoti Kumari
- Division of Germplasm Evaluation, ICAR-National Bureau of Plant Genetic Resources, New Delhi 110012, India; (S.S.); (R.B.)
| | - Amit Kumar Singh
- Division of Genomic Resources, ICAR-National Bureau of Plant Genetic Resources, New Delhi 110012, India; (A.K.S.); (A.K.P.); (S.K.); (M.C.Y.)
| | - Subodh Kumar Sinha
- ICAR-National Institute of Plant Biotechnology, New Delhi 110012, India;
| | - Anjan Kumar Pradhan
- Division of Genomic Resources, ICAR-National Bureau of Plant Genetic Resources, New Delhi 110012, India; (A.K.S.); (A.K.P.); (S.K.); (M.C.Y.)
| | - Shivani Sharma
- Division of Germplasm Evaluation, ICAR-National Bureau of Plant Genetic Resources, New Delhi 110012, India; (S.S.); (R.B.)
| | - Shailendra Kumar Jha
- Division of Genetics, Indian Council of Agricultural Research (ICAR)—Indian Agricultural Research Institute, New Delhi 110012, India; (T.D.); (S.K.J.)
| | - Ruchi Bansal
- Division of Germplasm Evaluation, ICAR-National Bureau of Plant Genetic Resources, New Delhi 110012, India; (S.S.); (R.B.)
| | - Sundeep Kumar
- Division of Genomic Resources, ICAR-National Bureau of Plant Genetic Resources, New Delhi 110012, India; (A.K.S.); (A.K.P.); (S.K.); (M.C.Y.)
| | - Girish Kumar Jha
- Division of Agricultural Economics, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India;
| | - Mahesh C. Yadav
- Division of Genomic Resources, ICAR-National Bureau of Plant Genetic Resources, New Delhi 110012, India; (A.K.S.); (A.K.P.); (S.K.); (M.C.Y.)
| | - P.V. Vara Prasad
- Department of Agronomy, Kansas State University, Manhattan, KS 66506, USA;
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19
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Zenda T, Liu S, Dong A, Duan H. Advances in Cereal Crop Genomics for Resilience under Climate Change. Life (Basel) 2021; 11:502. [PMID: 34072447 PMCID: PMC8228855 DOI: 10.3390/life11060502] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Revised: 05/21/2021] [Accepted: 05/25/2021] [Indexed: 12/12/2022] Open
Abstract
Adapting to climate change, providing sufficient human food and nutritional needs, and securing sufficient energy supplies will call for a radical transformation from the current conventional adaptation approaches to more broad-based and transformative alternatives. This entails diversifying the agricultural system and boosting productivity of major cereal crops through development of climate-resilient cultivars that can sustainably maintain higher yields under climate change conditions, expanding our focus to crop wild relatives, and better exploitation of underutilized crop species. This is facilitated by the recent developments in plant genomics, such as advances in genome sequencing, assembly, and annotation, as well as gene editing technologies, which have increased the availability of high-quality reference genomes for various model and non-model plant species. This has necessitated genomics-assisted breeding of crops, including underutilized species, consequently broadening genetic variation of the available germplasm; improving the discovery of novel alleles controlling important agronomic traits; and enhancing creation of new crop cultivars with improved tolerance to biotic and abiotic stresses and superior nutritive quality. Here, therefore, we summarize these recent developments in plant genomics and their application, with particular reference to cereal crops (including underutilized species). Particularly, we discuss genome sequencing approaches, quantitative trait loci (QTL) mapping and genome-wide association (GWAS) studies, directed mutagenesis, plant non-coding RNAs, precise gene editing technologies such as CRISPR-Cas9, and complementation of crop genotyping by crop phenotyping. We then conclude by providing an outlook that, as we step into the future, high-throughput phenotyping, pan-genomics, transposable elements analysis, and machine learning hold much promise for crop improvements related to climate resilience and nutritional superiority.
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Affiliation(s)
- Tinashe Zenda
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding 071001, China; (S.L.); (A.D.)
- North China Key Laboratory for Crop Germplasm Resources of the Education Ministry, Hebei Agricultural University, Baoding 071001, China
- Department of Crop Genetics and Breeding, College of Agronomy, Hebei Agricultural University, Baoding 071001, China
- Department of Crop Science, Faculty of Agriculture and Environmental Science, Bindura University of Science Education, Bindura P. Bag 1020, Zimbabwe
| | - Songtao Liu
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding 071001, China; (S.L.); (A.D.)
- North China Key Laboratory for Crop Germplasm Resources of the Education Ministry, Hebei Agricultural University, Baoding 071001, China
- Department of Crop Genetics and Breeding, College of Agronomy, Hebei Agricultural University, Baoding 071001, China
| | - Anyi Dong
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding 071001, China; (S.L.); (A.D.)
- North China Key Laboratory for Crop Germplasm Resources of the Education Ministry, Hebei Agricultural University, Baoding 071001, China
- Department of Crop Genetics and Breeding, College of Agronomy, Hebei Agricultural University, Baoding 071001, China
| | - Huijun Duan
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding 071001, China; (S.L.); (A.D.)
- North China Key Laboratory for Crop Germplasm Resources of the Education Ministry, Hebei Agricultural University, Baoding 071001, China
- Department of Crop Genetics and Breeding, College of Agronomy, Hebei Agricultural University, Baoding 071001, China
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20
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Assessing the Effect of Drought on Winter Wheat Growth Using Unmanned Aerial System (UAS)-Based Phenotyping. REMOTE SENSING 2021. [DOI: 10.3390/rs13061144] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Drought significantly limits wheat productivity across the temporal and spatial domains. Unmanned Aerial Systems (UAS) has become an indispensable tool to collect refined spatial and high temporal resolution imagery data. A 2-year field study was conducted in 2018 and 2019 to determine the temporal effects of drought on canopy growth of winter wheat. Weekly UAS data were collected using red, green, and blue (RGB) and multispectral (MS) sensors over a yield trial consisting of 22 winter wheat cultivars in both irrigated and dryland environments. Raw-images were processed to compute canopy features such as canopy cover (CC) and canopy height (CH), and vegetation indices (VIs) such as Normalized Difference Vegetation Index (NDVI), Excess Green Index (ExG), and Normalized Difference Red-edge Index (NDRE). The drought was more severe in 2018 than in 2019 and the effects of growth differences across years and irrigation levels were visible in the UAS measurements. CC, CH, and VIs, measured during grain filling, were positively correlated with grain yield (r = 0.4–0.7, p < 0.05) in the dryland in both years. Yield was positively correlated with VIs in 2018 (r = 0.45–0.55, p < 0.05) in the irrigated environment, but the correlations were non-significant in 2019 (r = 0.1 to −0.4), except for CH. The study shows that high-throughput UAS data can be used to monitor the drought effects on wheat growth and productivity across the temporal and spatial domains.
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21
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Xu F, Chen S, Yang X, Zhou S, Chen X, Li J, Zhan K, He D. Genome-Wide Association Study on Seminal and Nodal Roots of Wheat Under Different Growth Environments. FRONTIERS IN PLANT SCIENCE 2021; 11:602399. [PMID: 33505411 PMCID: PMC7829178 DOI: 10.3389/fpls.2020.602399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Accepted: 12/04/2020] [Indexed: 06/12/2023]
Abstract
The root of wheat consists of seminal and nodal roots. Comparatively speaking, fewer studies have been carried out on the nodal root system because of its disappearance at the early seedling stage under indoor environments. In this study, 196 accessions from the Huanghuai Wheat Region (HWR) were used to identify the characteristics of seminal and nodal root traits under different growth environments, including indoor hydroponic culture (IHC), outdoor hydroponic culture (OHC), and outdoor pot culture (OPC), for three growing seasons. The results indicated that the variation range of root traits in pot environment was larger than that in hydroponic environment, and canonical coefficients were the greatest between OHC and OPC (0.86) than those in other two groups, namely, IHC vs. OPC (0.48) and IHC vs. OHC (0.46). Most root traits were negatively correlated with spikes per area (SPA), grains per spike (GPS), and grain yield (GY), while all the seminal root traits were positively correlated with thousand-kernel weight (TKW). Genome-wide association study (GWAS) was carried out on root traits by using a wheat 660K SNP array. A total of 35 quantitative trait loci (QTLs)/chromosomal segments associated with root traits were identified under OPC and OHC. In detail, 11 and 24 QTLs were significantly associated with seminal root and nodal root traits, respectively. Moreover, 13 QTLs for number of nodal roots per plant (NRP) containing 14 stable SNPs, were distributed on chromosomes 1B, 2B, 3A, 4B, 5D, 6D, 7A, 7B, and Un. Based on LD and bioinformatics analysis, these QTLs may contain 17 genes closely related to NRP. Among them, TraesCS2B02G552500 and TraesCS7A02G428300 were highly expressed in root tissues. Moreover, the frequencies of favorable alleles of these 14 SNPs were confirmed to be less than 70% in the natural population, suggesting that the utilization of these superior genes in wheat root is still improving.
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Affiliation(s)
- Fengdan Xu
- College of Agronomy of Henan Agricultural University/National Engineering Research Center for Wheat/Co-construction State Key Laboratory of Wheat and Maize Crop Science/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, China
| | - Shulin Chen
- College of Agronomy of Henan Agricultural University/National Engineering Research Center for Wheat/Co-construction State Key Laboratory of Wheat and Maize Crop Science/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, China
| | - Xiwen Yang
- College of Agronomy of Henan Agricultural University/National Engineering Research Center for Wheat/Co-construction State Key Laboratory of Wheat and Maize Crop Science/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, China
| | - Sumei Zhou
- College of Agronomy of Henan Agricultural University/National Engineering Research Center for Wheat/Co-construction State Key Laboratory of Wheat and Maize Crop Science/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, China
| | - Xu Chen
- College of Agronomy of Henan Agricultural University/National Engineering Research Center for Wheat/Co-construction State Key Laboratory of Wheat and Maize Crop Science/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, China
| | - Jie Li
- College of Agronomy, Xinyang Agriculture and Forestry University, Xinyang, China
| | - Kehui Zhan
- College of Agronomy of Henan Agricultural University/National Engineering Research Center for Wheat/Co-construction State Key Laboratory of Wheat and Maize Crop Science/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, China
| | - Dexian He
- College of Agronomy of Henan Agricultural University/National Engineering Research Center for Wheat/Co-construction State Key Laboratory of Wheat and Maize Crop Science/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, China
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22
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Koua AP, Oyiga BC, Baig MM, Léon J, Ballvora A. Breeding Driven Enrichment of Genetic Variation for Key Yield Components and Grain Starch Content Under Drought Stress in Winter Wheat. FRONTIERS IN PLANT SCIENCE 2021; 12:684205. [PMID: 34484257 PMCID: PMC8415485 DOI: 10.3389/fpls.2021.684205] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Accepted: 07/20/2021] [Indexed: 05/12/2023]
Abstract
Drought is one of the major abiotic stress factors limiting wheat production worldwide, thus threatening food security. The dissection of the genetic footprint of drought stress response offers strong opportunities toward understanding and improving drought tolerance (DT) in wheat. In this study, we investigated the genotypic variability for drought response among 200 diverse wheat cultivars (genotypes) using agronomic, developmental, and grain quality traits (GQT), and conducted genome-wide association studies (GWAS) to uncover the genetic architectures of these important traits. Results indicated significant effects of genotype, water regime and their interactions for all agronomic traits. Grain yield (GY) was the most drought-responsive trait and was highly correlated with kernels number per meter square (KN). Genome-wide association studies revealed 17 and 20 QTL regions under rainfed and drought conditions, respectively, and identified one LD block on chromosome 3A and two others on 5D associated with breeding progress (BP). The major haplotypes of these LD blocks have been positively selected through breeding and are associated with higher starch accumulation and GY under drought conditions. Upon validation, the identified QTL regions caring favorable alleles for high starch and yield will shed light on mechanisms of tolerance to drought and can be used to develop drought resistant cultivars.
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Affiliation(s)
- Ahossi Patrice Koua
- Department of Plant Breeding, Institut für Nutzpflanzenwissenschaften und Ressourcenschutz (INRES), Rheinische Friedrich-Wilhelms-University, Bonn, Germany
| | - Benedict Chijioke Oyiga
- Department of Plant Breeding, Institut für Nutzpflanzenwissenschaften und Ressourcenschutz (INRES), Rheinische Friedrich-Wilhelms-University, Bonn, Germany
| | - Mirza Majid Baig
- Department of Plant Breeding, Institut für Nutzpflanzenwissenschaften und Ressourcenschutz (INRES), Rheinische Friedrich-Wilhelms-University, Bonn, Germany
| | - Jens Léon
- Department of Plant Breeding, Institut für Nutzpflanzenwissenschaften und Ressourcenschutz (INRES), Rheinische Friedrich-Wilhelms-University, Bonn, Germany
- Field Lab Campus Klein-Altendorf, Rheinische Friedrich-Wilhelms-University, Bonn, Germany
| | - Agim Ballvora
- Department of Plant Breeding, Institut für Nutzpflanzenwissenschaften und Ressourcenschutz (INRES), Rheinische Friedrich-Wilhelms-University, Bonn, Germany
- *Correspondence: Agim Ballvora
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23
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Chávez‐Dulanto PN, Thiry AAA, Glorio‐Paulet P, Vögler O, Carvalho FP. Increasing the impact of science and technology to provide more people with healthier and safer food. Food Energy Secur 2020. [DOI: 10.1002/fes3.259] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Affiliation(s)
- Perla N. Chávez‐Dulanto
- Department of Plant Sciences Faculty of Agronomy Universidad Nacional Agraria La Molina Lima Peru
| | - Arnauld A. A. Thiry
- The Lancaster Environment Centre Lancaster University Bailrigg Lancaster United Kingdom
| | - Patricia Glorio‐Paulet
- Department of Food Engineering Faculty of Food Industry Universidad Nacional Agraria La Molina Lima Peru
| | - Oliver Vögler
- Group of Clinical and Translational Research Research Institute of Health Sciences (IUNICS‐IdISBa) Department of Biology University of the Balearic Islands Palma de Mallorca Spain
| | - Fernando P. Carvalho
- Laboratório de Protecção e Segurança Radiológica Instituto Superior Técnico—Universidade de Lisboa Lisboa Portugal
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24
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Jatayev S, Sukhikh I, Vavilova V, Smolenskaya SE, Goncharov NP, Kurishbayev A, Zotova L, Absattarova A, Serikbay D, Hu YG, Borisjuk N, Gupta NK, Jacobs B, de Groot S, Koekemoer F, Alharthi B, Lethola K, Cu DT, Schramm C, Anderson P, Jenkins CLD, Soole KL, Shavrukov Y, Langridge P. Green revolution 'stumbles' in a dry environment: Dwarf wheat with Rht genes fails to produce higher grain yield than taller plants under drought. PLANT, CELL & ENVIRONMENT 2020; 43:2355-2364. [PMID: 32515827 DOI: 10.1111/pce.13819] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Accepted: 06/03/2020] [Indexed: 06/11/2023]
Affiliation(s)
- Satyvaldy Jatayev
- Faculty of Agronomy, S. Seifullin Kazakh Agro-Technical University, Nur-Sultan, Kazakhstan
| | - Igor Sukhikh
- Institute of Cytology and Genetics, Russian Academy of Sciences, Siberian Branch, Novosibirsk, Russia
| | - Valeriya Vavilova
- Institute of Cytology and Genetics, Russian Academy of Sciences, Siberian Branch, Novosibirsk, Russia
| | - Svetlana E Smolenskaya
- Institute of Cytology and Genetics, Russian Academy of Sciences, Siberian Branch, Novosibirsk, Russia
| | - Nikolay P Goncharov
- Institute of Cytology and Genetics, Russian Academy of Sciences, Siberian Branch, Novosibirsk, Russia
| | - Akhylbek Kurishbayev
- Faculty of Agronomy, S. Seifullin Kazakh Agro-Technical University, Nur-Sultan, Kazakhstan
| | - Lyudmila Zotova
- Faculty of Agronomy, S. Seifullin Kazakh Agro-Technical University, Nur-Sultan, Kazakhstan
| | - Aiman Absattarova
- Faculty of Agronomy, S. Seifullin Kazakh Agro-Technical University, Nur-Sultan, Kazakhstan
| | - Dauren Serikbay
- Faculty of Agronomy, S. Seifullin Kazakh Agro-Technical University, Nur-Sultan, Kazakhstan
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Yin-Gang Hu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Nikolai Borisjuk
- School of Life Science, Huaian Normal University, Huai'an, China
| | | | - Bertus Jacobs
- LongReach Plant Breeders Management Pty Ltd, Lonsdale, South Australia, Australia
| | | | | | - Badr Alharthi
- College of Science and Engineering (Biological Sciences), Flinders University, Bedford Park, South Australia, Australia
| | - Katso Lethola
- College of Science and Engineering (Biological Sciences), Flinders University, Bedford Park, South Australia, Australia
| | - Dan T Cu
- College of Science and Engineering (Biological Sciences), Flinders University, Bedford Park, South Australia, Australia
| | - Carly Schramm
- College of Science and Engineering (Biological Sciences), Flinders University, Bedford Park, South Australia, Australia
| | - Peter Anderson
- College of Science and Engineering (Biological Sciences), Flinders University, Bedford Park, South Australia, Australia
| | - Colin L D Jenkins
- College of Science and Engineering (Biological Sciences), Flinders University, Bedford Park, South Australia, Australia
| | - Kathleen L Soole
- College of Science and Engineering (Biological Sciences), Flinders University, Bedford Park, South Australia, Australia
| | - Yuri Shavrukov
- College of Science and Engineering (Biological Sciences), Flinders University, Bedford Park, South Australia, Australia
| | - Peter Langridge
- Wheat Initiative, Julius-Kühn-Institute, Berlin, Germany
- University of Adelaide, Urrbrae, South Australia, Australia
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25
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Mehri N, Fotovat R, Mirzaei M, Fard EM, Parsamatin P, Hasan MT, Wu Y, Ghaffari MR, Salekdeh GH. Proteomic analysis of wheat contrasting genotypes reveals the interplay between primary metabolic and regulatory pathways in anthers under drought stress. J Proteomics 2020; 226:103895. [DOI: 10.1016/j.jprot.2020.103895] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2020] [Revised: 06/12/2020] [Accepted: 07/06/2020] [Indexed: 02/08/2023]
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26
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Khadka K, Earl HJ, Raizada MN, Navabi A. A Physio-Morphological Trait-Based Approach for Breeding Drought Tolerant Wheat. FRONTIERS IN PLANT SCIENCE 2020; 11:715. [PMID: 32582249 PMCID: PMC7286286 DOI: 10.3389/fpls.2020.00715] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 05/06/2020] [Indexed: 05/18/2023]
Abstract
In the past, there have been drought events in different parts of the world, which have negatively influenced the productivity and production of various crops including wheat (Triticum aestivum L.), one of the world's three important cereal crops. Breeding new high yielding drought-tolerant wheat varieties is a research priority specifically in regions where climate change is predicted to result in more drought conditions. Commonly in breeding for drought tolerance, grain yield is the basis for selection, but it is a complex, late-stage trait, affected by many factors aside from drought. A strategy that evaluates genotypes for physiological responses to drought at earlier growth stages may be more targeted to drought and time efficient. Such an approach may be enabled by recent advances in high-throughput phenotyping platforms (HTPPs). In addition, the success of new genomic and molecular approaches rely on the quality of phenotypic data which is utilized to dissect the genetics of complex traits such as drought tolerance. Therefore, the first objective of this review is to describe the growth-stage based physio-morphological traits that could be targeted by breeders to develop drought-tolerant wheat genotypes. The second objective is to describe recent advances in high throughput phenotyping of drought tolerance related physio-morphological traits primarily under field conditions. We discuss how these strategies can be integrated into a comprehensive breeding program to mitigate the impacts of climate change. The review concludes that there is a need for comprehensive high throughput phenotyping of physio-morphological traits that is growth stage-based to improve the efficiency of breeding drought-tolerant wheat.
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Affiliation(s)
- Kamal Khadka
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada
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27
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Rani A, Devi P, Jha UC, Sharma KD, Siddique KHM, Nayyar H. Developing Climate-Resilient Chickpea Involving Physiological and Molecular Approaches With a Focus on Temperature and Drought Stresses. FRONTIERS IN PLANT SCIENCE 2020; 10:1759. [PMID: 32161601 PMCID: PMC7052492 DOI: 10.3389/fpls.2019.01759] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Accepted: 12/16/2019] [Indexed: 05/19/2023]
Abstract
Chickpea is one of the most economically important food legumes, and a significant source of proteins. It is cultivated in more than 50 countries across Asia, Africa, Europe, Australia, North America, and South America. Chickpea production is limited by various abiotic stresses (cold, heat, drought, salt, etc.). Being a winter-season crop in northern south Asia and some parts of the Australia, chickpea faces low-temperature stress (0-15°C) during the reproductive stage that causes substantial loss of flowers, and thus pods, to inhibit its yield potential by 30-40%. The winter-sown chickpea in the Mediterranean, however, faces cold stress at vegetative stage. In late-sown environments, chickpea faces high-temperature stress during reproductive and pod filling stages, causing considerable yield losses. Both the low and the high temperatures reduce pollen viability, pollen germination on the stigma, and pollen tube growth resulting in poor pod set. Chickpea also experiences drought stress at various growth stages; terminal drought, along with heat stress at flowering and seed filling can reduce yields by 40-45%. In southern Australia and northern regions of south Asia, lack of chilling tolerance in cultivars delays flowering and pod set, and the crop is usually exposed to terminal drought. The incidences of temperature extremes (cold and heat) as well as inconsistent rainfall patterns are expected to increase in near future owing to climate change thereby necessitating the development of stress-tolerant and climate-resilient chickpea cultivars having region specific traits, which perform well under drought, heat, and/or low-temperature stress. Different approaches, such as genetic variability, genomic selection, molecular markers involving quantitative trait loci (QTLs), whole genome sequencing, and transcriptomics analysis have been exploited to improve chickpea production in extreme environments. Biotechnological tools have broadened our understanding of genetic basis as well as plants' responses to abiotic stresses in chickpea, and have opened opportunities to develop stress tolerant chickpea.
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Affiliation(s)
- Anju Rani
- Department of Botany, Panjab University, Chandigarh, India
| | - Poonam Devi
- Department of Botany, Panjab University, Chandigarh, India
| | - Uday Chand Jha
- Department of Crop Improvement Division, Indian Institute of Pulses Research, Kanpur, India
| | - Kamal Dev Sharma
- Department of Agricultural Biotechnology, Himachal Pradesh Agricultural University, Palampur, India
| | - Kadambot H M Siddique
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
| | - Harsh Nayyar
- Department of Botany, Panjab University, Chandigarh, India
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28
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Tura H, Edwards J, Gahlaut V, Garcia M, Sznajder B, Baumann U, Shahinnia F, Reynolds M, Langridge P, Balyan HS, Gupta PK, Schnurbusch T, Fleury D. QTL analysis and fine mapping of a QTL for yield-related traits in wheat grown in dry and hot environments. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2020; 133:239-257. [PMID: 31586227 PMCID: PMC7990757 DOI: 10.1007/s00122-019-03454-6] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2018] [Accepted: 09/30/2019] [Indexed: 05/18/2023]
Abstract
Genetic control of grain yield and phenology was examined in the Excalibur/Kukri doubled haploid mapping population grown in 32 field experiments across the climatic zones of southern Australia, India and north-western Mexico where the wheat crop experiences drought and heat stress. A total of 128 QTL were identified for four traits: grain yield, thousand grain weight (TGW), days to heading and grain filling duration. These QTL included 24 QTL for yield and 27 for TGW, showing significant interactions with the environment (Q * E). We also identified 14 QTL with a significant, small main effects on yield across environments. The study focussed on a region of chromosome 1B where two main effect QTL were found for yield and TGW without the confounding effect of phenology. Excalibur was the source of favourable alleles: QYld.aww-1B.2 with a peak at 149.5-150.1 cM and QTgw.aww-1B at 168.5-171.4 cM. We developed near isogenic lines (NIL) for the interval including QYld.aww-1B.2 and QTgw.aww-1B and evaluated them under semi-controlled conditions. Significant differences in four pairs of NIL were observed for grain yield but not for TGW, confirming a positive effect of the Excalibur allele for QYld.aww-1B.2. The interval containing QYld.aww-1B.2 was narrowed down to 2.9 cM which corresponded to a 2.2 Mbp genomic region on the chromosome 1B genomic reference sequence of cv. Chinese Spring and contained 39 predicted genes.
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Affiliation(s)
- Habtamu Tura
- School of Agriculture, Food and Wine, Waite Campus, University of Adelaide, PMB1, Glen Osmond, SA, 5064, Australia
| | - James Edwards
- School of Agriculture, Food and Wine, Waite Campus, University of Adelaide, PMB1, Glen Osmond, SA, 5064, Australia
- Australian Grain Technologies, 20 Leitch Road, Roseworthy, SA, Australia
| | - Vijay Gahlaut
- Department of Genetics and Plant Breeding, Ch. Charan Singh University, Meerut, India
| | - Melissa Garcia
- School of Agriculture, Food and Wine, Waite Campus, University of Adelaide, PMB1, Glen Osmond, SA, 5064, Australia.
| | - Beata Sznajder
- School of Agriculture, Food and Wine, Waite Campus, University of Adelaide, PMB1, Glen Osmond, SA, 5064, Australia
| | - Ute Baumann
- School of Agriculture, Food and Wine, Waite Campus, University of Adelaide, PMB1, Glen Osmond, SA, 5064, Australia
| | - Fahimeh Shahinnia
- School of Agriculture, Food and Wine, Waite Campus, University of Adelaide, PMB1, Glen Osmond, SA, 5064, Australia
- Institute for Crop Science and Plant Breeding, Bavarian State Research Center for Agriculture, Am Gereuth 8, 85354, Freising, Germany
| | - Matthew Reynolds
- International Maize and Wheat Improvement Center (CIMMYT), Int. AP 6-641, 06600, Mexico, D.F., Mexico
| | - Peter Langridge
- School of Agriculture, Food and Wine, Waite Campus, University of Adelaide, PMB1, Glen Osmond, SA, 5064, Australia
- Julius-Kühn-Institute, Königin-Louise-Str 19, 14195, Berlin, Germany
| | - Harindra Singh Balyan
- Department of Genetics and Plant Breeding, Ch. Charan Singh University, Meerut, India
| | - Pushpendra K Gupta
- Department of Genetics and Plant Breeding, Ch. Charan Singh University, Meerut, India
| | - Thorsten Schnurbusch
- School of Agriculture, Food and Wine, Waite Campus, University of Adelaide, PMB1, Glen Osmond, SA, 5064, Australia
- Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Gatersleben, Germany
| | - Delphine Fleury
- School of Agriculture, Food and Wine, Waite Campus, University of Adelaide, PMB1, Glen Osmond, SA, 5064, Australia
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29
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Xu L, Liu H, Kilian A, Bhoite R, Liu G, Si P, Wang J, Zhou W, Yan G. QTL Mapping Using a High-Density Genetic Map to Identify Candidate Genes Associated With Metribuzin Tolerance in Hexaploid Wheat ( Triticum aestivum L.). FRONTIERS IN PLANT SCIENCE 2020; 11:573439. [PMID: 33042190 PMCID: PMC7527527 DOI: 10.3389/fpls.2020.573439] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Accepted: 08/31/2020] [Indexed: 05/16/2023]
Abstract
Tolerance to metribuzin, a broad-spectrum herbicide, is an important trait for weed control in wheat breeding. However, the genetics of metribuzin tolerance in relation to the underlying quantitative trait loci (QTL) and genes is limited. This study developed F8 recombinant inbred lines (RILs) from a cross between a highly resistant genotype (Chuan Mai 25) and highly susceptible genotype (Ritchie), which were used for QTL mapping of metribuzin tolerance. Genotyping was done using a diversity arrays technology sequencing (DArTseq) platform, and phenotyping was done in controlled environments. Herbicide tolerance was measured using three traits, visual score (VS), reduction of chlorophyll content (RCC), and mean value of chlorophyll content for metribuzin-treated plants (MCC). A high-density genetic linkage map was constructed using 2,129 DArTseq markers. Inclusive composite interval mapping (ICIM) identified seven QTL, one each on chromosomes 2A, 2D, 3A, 3B, 4A, 5A, and 6A. Three major QTL-Qrcc.uwa.2AS, Qrcc.uwa.5AL, and Qrcc.uwa.6AL-explained 11.39%, 11.06%, and 11.45% of the phenotypic variation, respectively. The 5A QTL was further validated using kompetitive allele-specific PCR (KASP) assays in an F3 validation population developed from Chuan Mai 25 × Dagger. Blasting the single-nucleotide polymorphisms (SNPs) flanking the QTL in the wheat reference genome RefV1.0 revealed SNP markers within or very close to annotated genes which could be candidate genes responsible for metribuzin tolerance. Most of the candidate genes were related to metabolic detoxification, especially those of P450 pathway and xenobiotic transmembrane transporter activity, which are reportedly key molecules responsible for herbicide tolerance. This study is the first to use specially developed populations to conduct QTL mapping on the metribuzin tolerance trait. The three major QTL and candidate genes identified in this study could facilitate marker-assisted metribuzin breeding in wheat. The QTL could be fine-mapped to locate the genes responsible for metribuzin tolerance, which could be introgressed into elite wheat cultivars.
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Affiliation(s)
- Ling Xu
- Zhejiang Province Key Laboratory of Plant Secondary Metabolism and Regulation, College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou, China
- Faculty of Science, UWA School of Agriculture and Environment and The UWA Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia
| | - Hui Liu
- Faculty of Science, UWA School of Agriculture and Environment and The UWA Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia
| | - Andrzej Kilian
- Faculty of Science and Technology, Diversity Arrays Technology Pty Ltd., University of Canberra, Bruce, ACT, Australia
| | - Roopali Bhoite
- Faculty of Science, UWA School of Agriculture and Environment and The UWA Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia
| | - Guannan Liu
- Faculty of Science, UWA School of Agriculture and Environment and The UWA Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia
| | - Ping Si
- Faculty of Science, UWA School of Agriculture and Environment and The UWA Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia
| | - Jian Wang
- Faculty of Science, UWA School of Agriculture and Environment and The UWA Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia
- Institute of Crop Science and Zhejiang Key Laboratory of Crop Germplasm, Zhejiang University, Hangzhou, China
| | - Weijun Zhou
- Institute of Crop Science and Zhejiang Key Laboratory of Crop Germplasm, Zhejiang University, Hangzhou, China
| | - Guijun Yan
- Faculty of Science, UWA School of Agriculture and Environment and The UWA Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia
- *Correspondence: Guijun Yan,
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Haas M, Sprenger H, Zuther E, Peters R, Seddig S, Walther D, Kopka J, Hincha DK, Köhl KI. Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments? FRONTIERS IN PLANT SCIENCE 2020; 11:1071. [PMID: 32793257 PMCID: PMC7385397 DOI: 10.3389/fpls.2020.01071] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Accepted: 06/30/2020] [Indexed: 05/09/2023]
Abstract
Climate models predict an increased likelihood of drought, demanding efficient selection for drought tolerance to maintain yield stability. Classic tolerance breeding relies on selection for yield in arid environments, which depends on yield trials and takes decades. Breeding could be accelerated by marker-assisted selection (MAS). As an alternative to genomic markers, transcript and metabolite markers have been suggested for important crops but also for orphan corps. For potato, we suggested a random-forest-based model that predicts tolerance from leaf metabolite and transcript levels with a precision of more than 90% independent of the agro-environment. To find out how the model based selection compares to yield-based selection in arid environments, we applied this approach to a population of 200 tetraploid Solanum tuberosum ssp. tuberosum lines segregating for drought tolerance. Twenty-four lines were selected into a phenotypic subpopulation (PPt) for superior tolerance based on relative tuber starch yield data from three drought stress trials. Two subpopulations with superior (MPt) and inferior (MPs) tolerance were selected based on drought tolerance predictions based on leaf metabolite and transcript levels from two sites. The 60 selected lines were phenotyped for yield and drought tolerance in 10 multi-environment drought stress trials representing typical Central European drought scenarios. Neither selection affected development or yield potential. Lines with superior drought tolerance and high yields under stress were over-represented in both populations selected for superior tolerance, with a higher number in PPt compared to MPt. However, selection based on leaf metabolites may still be an alternative to yield-based selection in arid environments as it works on leaves sampled in breeder's fields independent of drought trials. As the selection against low tolerance was ineffective, the method is best used in combination with tools that select against sensitive genotypes. Thus, metabolic and transcript marker-based selection for drought tolerance is a viable alternative to the selection on yield in arid environments.
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Affiliation(s)
- Manuela Haas
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Heike Sprenger
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Ellen Zuther
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Rolf Peters
- Versuchsstation Dethlingen, Landwirtschaftskammer Niedersachsen, Munster, Germany
| | - Sylvia Seddig
- Federal Research Centre for Cultivated Plants, Institute for Resistance Research and Stress Tolerance, Julius-Kühn Institut, Sanitz, Germany
| | - Dirk Walther
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Joachim Kopka
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Dirk K. Hincha
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Karin I. Köhl
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
- *Correspondence: Karin I. Köhl,
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31
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Liu S, Martre P, Buis S, Abichou M, Andrieu B, Baret F. Estimation of Plant and Canopy Architectural Traits Using the Digital Plant Phenotyping Platform. PLANT PHYSIOLOGY 2019; 181:881-890. [PMID: 31420444 PMCID: PMC6836827 DOI: 10.1104/pp.19.00554] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Accepted: 08/01/2019] [Indexed: 05/19/2023]
Abstract
The extraction of desirable heritable traits for crop improvement from high-throughput phenotyping (HTP) observations remains challenging. We developed a modeling workflow named "Digital Plant Phenotyping Platform" (D3P), to access crop architectural traits from HTP observations. D3P couples the Architectural model of DEvelopment based on L-systems (ADEL) wheat (Triticum aestivum) model (ADEL-Wheat), which describes the time course of the three-dimensional architecture of wheat crops, with simulators of images acquired with HTP sensors. We demonstrated that a sequential assimilation of the green fraction derived from Red-Green-Blue images of the crop into D3P provides accurate estimates of five key parameters (phyllochron, lamina length of the first leaf, rate of elongation of leaf lamina, number of green leaves at the start of leaf senescence, and minimum number of green leaves) of the ADEL-Wheat model that drive the time course of green area index and the number of axes with more than three leaves at the end of the tillering period. However, leaf and tiller orientation and inclination characteristics were poorly estimated. D3P was also used to optimize the observational configuration. The results, obtained from in silico experiments conducted on wheat crops at several vegetative stages, showed that the accessible traits could be estimated accurately with observations made at 0° and 60° zenith view inclination with a temporal frequency of 100 °Cd (degree day). This illustrates the potential of the proposed holistic approach that integrates all the available information into a consistent system for interpretation. The potential benefits and limitations of the approach are further discussed.
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Affiliation(s)
- Shouyang Liu
- Environnement Méditerranéen et Modélisation des Agro-Hydrosystèmes (EMMAH), Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1114 Domaine Saint-Paul, 84914 Avignon Cedex 9, France
- Laboratoire d'Écophysiologie des Plantes sous Stress Environnementaux (LEPSE), Université Montpellier, Institut National de la Recherche Agronomique, Montpellier SupAgro, 34060 Montpellier, France
| | - Pierre Martre
- Laboratoire d'Écophysiologie des Plantes sous Stress Environnementaux (LEPSE), Université Montpellier, Institut National de la Recherche Agronomique, Montpellier SupAgro, 34060 Montpellier, France
| | - Samuel Buis
- Environnement Méditerranéen et Modélisation des Agro-Hydrosystèmes (EMMAH), Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1114 Domaine Saint-Paul, 84914 Avignon Cedex 9, France
| | - Mariem Abichou
- Institut National de la Recherche Agronomique-AgroParisTech, Unité Mixte de Recherche 1091 Environnement et Grandes Cultures, 78850 Thiverval-Grignon, France
| | - Bruno Andrieu
- Institut National de la Recherche Agronomique-AgroParisTech, Unité Mixte de Recherche 1091 Environnement et Grandes Cultures, 78850 Thiverval-Grignon, France
| | - Frédéric Baret
- Environnement Méditerranéen et Modélisation des Agro-Hydrosystèmes (EMMAH), Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1114 Domaine Saint-Paul, 84914 Avignon Cedex 9, France
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Liu H, Able AJ, Able JA. Genotypic performance of Australian durum under single and combined water-deficit and heat stress during reproduction. Sci Rep 2019; 9:14986. [PMID: 31628402 PMCID: PMC6802220 DOI: 10.1038/s41598-019-49871-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Accepted: 08/29/2019] [Indexed: 12/25/2022] Open
Abstract
In Mediterranean environments, water deficiency and heat during reproduction severely limit cereal crop production. Our research investigated the effects of single and combined pre-anthesis water-deficit stress and post-anthesis heat stress in ten Australian durum genotypes, providing a systematic evaluation of stress response at the molecular, physiological, grain quality and yield level. We studied leaf physiological traits at different reproductive stages, evaluated the grain yield and quality, and the associations among them. We profiled the expression dynamics of two durum microRNAs and their protein-coding targets (auxin response factors and heat shock proteins) involved in stress adaptation. Chlorophyll content, stomatal conductance and leaf relative water content were mostly reduced under stress, however, subject to the time-point and genotype. The influence of stress on grain traits (e.g., protein content) also varied considerably among the genotypes. Significant positive correlations between the physiological traits and the yield components could be used to develop screening strategies for stress improvement in breeding. Different expression patterns of stress-responsive microRNAs and their targets in the most stress-tolerant and most stress-sensitive genotype provided some insight into the complex defense molecular networks in durum. Overall, genotypic performance observed indicates that different stress-coping strategies are deployed by varieties under various stresses.
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Affiliation(s)
- Haipei Liu
- School of Agriculture, Food & Wine, Waite Research Institute, The University of Adelaide, Urrbrae, SA, Australia.
| | - Amanda J Able
- School of Agriculture, Food & Wine, Waite Research Institute, The University of Adelaide, Urrbrae, SA, Australia
| | - Jason A Able
- School of Agriculture, Food & Wine, Waite Research Institute, The University of Adelaide, Urrbrae, SA, Australia
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Mickky B, Aldesuquy H, Elnajar M. Drought-induced change in yield capacity of ten wheat cultivars in relation to their vegetative characteristics at heading stage. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2019; 25:1137-1148. [PMID: 31564777 PMCID: PMC6745582 DOI: 10.1007/s12298-019-00705-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Revised: 07/16/2019] [Accepted: 08/20/2019] [Indexed: 05/21/2023]
Abstract
Ten wheat (Triticum aestivum L.) cultivars were tested in a semi-field experiment for drought response in terms of their flag leaf vigor, whole shoot growth and ultimate yield capacity. At booting stage, 25% of field capacity was held for 3 weeks, then the plants were normally irrigated. Based on split plot analysis of the pooled data, the order in which the source of variation could affect the estimated traits was watering level, then cultivar and finally the combination of both. At p ≤ 0.05, significant positive linear correlation was recorded between the drought-induced change in grain total carbohydrate content and leaf total carbohydrate content, between biological yield and each of water use efficiency for biomass and evapotranspiration efficiency as well as between economic yield and each of leaf catalase activity, water use efficiency for grain and hundred kernel mass. On contrary, significant negative correlation was recorded between the drought-induced change in shoot evapotranspiration rate and each of leaf proline content and shoot water content. Based on the drought-induced change in the estimated vegetative and yield traits, cluster analysis could sequester the concerned cultivars into drought-tolerant, moderate and sensitive ones; with Sids 13 being the most drought-tolerant cultivar as well as Shandaweel 1 and Giza 168 as the most drought-sensitive ones.
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Affiliation(s)
- Bardees Mickky
- Botany Department, Faculty of Science, Mansoura University, Mansoura, 35516 Egypt
| | - Heshmat Aldesuquy
- Botany Department, Faculty of Science, Mansoura University, Mansoura, 35516 Egypt
| | - Mustafa Elnajar
- Botany Department, Faculty of Science, Mansoura University, Mansoura, 35516 Egypt
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Sanad MNME, Smertenko A, Garland-Campbell KA. Differential Dynamic Changes of Reduced Trait Model for Analyzing the Plastic Response to Drought Phases: A Case Study in Spring Wheat. FRONTIERS IN PLANT SCIENCE 2019; 10:504. [PMID: 31080454 PMCID: PMC6497792 DOI: 10.3389/fpls.2019.00504] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2018] [Accepted: 04/01/2019] [Indexed: 05/21/2023]
Abstract
Current limited water availability due to climate changes results in severe drought stress and desiccation in plants. Phenotyping drought tolerance remains challenging. In particular, our knowledge about the discriminating power of traits for capturing a plastic phenotype in high-throughput settings is scant. The study is designed to investigate the differential performance and broad-sense heritability of a battery set of morphological, physiological, and cellular traits to understand the adaptive phenotypic response to drought in spring wheat during the tillering stage. The potential of peroxisome abundance to predict the adaptive response under severe drought was assessed using a high-throughput technique for peroxisome quantification in plants. The research dissected the dynamic changes of some phenological traits during three successive phases of drought using two contrasting genotypes of adaptability to drought. The research demonstrates 5 main findings: (1) a reduction of the overall dimension of the phenological traits for robust phenotyping of the adaptive performance under drought; (2) the abundance of peroxisomes in response to drought correlate negatively with grain yield; (3) the efficiency of ROS homeostasis through peroxisome proliferation which seems to be genetically programmed; and (4) the dynamics of ROS homeostasis seems to be timing dependent mechanism, the tolerant genotype response is earlier than the susceptible genotype. This work will contribute to the identification of robust plastic phenotypic tools and the understanding of the mechanisms for adaptive behavior under drought conditions. SUMMARY STATEMENT This study presents the estimated broad-sense heritability of 24 phenological traits under drought compared with non-stressed conditions. The results demonstrated a reduced model of the overall dimension of the phenological traits for phenotyping drought tolerant response including a novel trait (peroxisome abundance). Also, it displays that the adaptive mechanism through peroxisomes proliferation that is a genetic-dependent manner and related to the stress phase, since tolerant plants can sense the stress and maintain the cellular balance earlier than the sensitive plants.
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Affiliation(s)
- Marwa N. M. E. Sanad
- Department of Genetics and Cytology, National Research Centre, Giza, Egypt
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, United States
- Institute of Biological Chemistry, Washington State University, Pullman, WA, United States
| | - Andrei Smertenko
- Institute of Biological Chemistry, Washington State University, Pullman, WA, United States
| | - Kimberley A. Garland-Campbell
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, United States
- USDA-ARS Wheat Health, Genetics, and Quality Research Unit, Washington State University, Pullman, WA, United States
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Ghamkhar K, Irie K, Hagedorn M, Hsiao J, Fourie J, Gebbie S, Hoyos-Villegas V, George R, Stewart A, Inch C, Werner A, Barrett B. Real-time, non-destructive and in-field foliage yield and growth rate measurement in perennial ryegrass ( Lolium perenne L.). PLANT METHODS 2019; 15:72. [PMID: 31320920 PMCID: PMC6617592 DOI: 10.1186/s13007-019-0456-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Accepted: 07/02/2019] [Indexed: 05/13/2023]
Abstract
BACKGROUND In-field measurement of yield and growth rate in pasture species is imprecise and costly, limiting scientific and commercial application. Our study proposed a LiDAR-based mobile platform for non-invasive vegetative biomass and growth rate estimation in perennial ryegrass (Lolium perenne L.). This included design and build of the platform, development of an algorithm for volumetric estimation, and field validation of the system. The LiDAR-based volumetric estimates were compared against fresh weight and dry weight data across different ages of plants, seasons, stages of regrowth, sites, and row configurations. RESULTS The project had three phases, the last one comprising four experiments. Phase 1: a LiDAR-based, field-ready prototype mobile platform for perennial ryegrassrecognition in single row plots was developed. Phase 2: real-time volumetric data capture, modelling and analysis software were developed and integrated and the resultant algorithm was validated in the field. Phase 3. LiDAR Volume data were collected via the LiDAR platform and field-validated in four experiments. Expt.1: single-row plots of cultivars and experimental diploid breeding populations were scanned in the southern hemisphere spring for biomass estimation. Significant (P < 0.001) correlations were observed between LiDAR Volume and both fresh and dry weight data from 360 individual plots (R2 = 0.89 and 0.86 respectively). Expt 2: recurrent scanning of single row plots over long time intervals of a few weeks was conducted, and growth was estimated over an 83 day period. Expt 3: recurrent scanning of single-row plots over nine short time intervals of 2 to 5 days was conducted, and growth rate was observed over a 26 day period. Expt 4: recurrent scanning of paired-row plots over an annual cycle of repeated growth and defoliation was conducted, showing an overall mean correlation of LiDAR Volume and fresh weight of R2 = 0.79 for 1008 observations made across seven different harvests between March and December 2018. CONCLUSIONS Here we report development and validation of LiDAR-based volumetric estimation as an efficient and effective tool for measuring fresh weight, dry weight and growth rate in single and paired-row plots of perennial ryegrass for the first time, with a consistently high level of accuracy. This development offers precise, non-destructive and cost-effective estimation of these economic traits in the field for ryegrass and potentially other pasture grasses in the future, based on the platform and algorithm developed for ryegrass.
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Affiliation(s)
- Kioumars Ghamkhar
- Forage Science, Grasslands Research Centre, AgResearch, Palmerston North, New Zealand
| | - Kenji Irie
- Lincoln Agritech Ltd, Lincoln, New Zealand
- Red Fern Solutions Ltd, Christchurch, New Zealand
| | - Michael Hagedorn
- Lincoln Agritech Ltd, Lincoln, New Zealand
- Red Fern Solutions Ltd, Christchurch, New Zealand
| | | | | | - Steve Gebbie
- Development Engineering, Lincoln Research Centre, AgResearch, Lincoln, New Zealand
| | | | | | - Alan Stewart
- PGG Wrightson Seeds Ltd, Christchurch, New Zealand
| | - Courtney Inch
- New Zealand Agriseeds Ltd, Christchurch, New Zealand
| | | | - Brent Barrett
- Forage Science, Grasslands Research Centre, AgResearch, Palmerston North, New Zealand
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Czyczyło-Mysza IM, Marcińska I, Skrzypek E, Bocianowski J, Dziurka K, Rančić D, Radošević R, Pekić-Quarrie S, Dodig D, Quarrie SA. Genetic analysis of water loss of excised leaves associated with drought tolerance in wheat. PeerJ 2018; 6:e5063. [PMID: 30002956 PMCID: PMC6037134 DOI: 10.7717/peerj.5063] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Accepted: 06/04/2018] [Indexed: 01/14/2023] Open
Abstract
Background Wheat is widely affected by drought. Low excised-leaf water loss (ELWL) has frequently been associated with improved grain yield under drought. This study dissected the genetic control of ELWL in wheat, associated physiological, morphological and anatomical leaf traits, and compared these with yield QTLs. Methods Ninety-four hexaploid wheat (Triticum aestivum L.) doubled haploids, mapped with over 700 markers, were tested for three years for ELWL from detached leaf 4 of glasshouse-grown plants. In one experiment, stomata per unit area and leaf thickness parameters from leaf cross-sections were measured. QTLs were identified using QTLCartographer. Results ELWL was significantly negatively correlated with leaf length, width, area and thickness. Major QTLs for ELWL during 0–3 h and 3–6 h were coincident across trials on 3A, 3B, 4B, 5B, 5D, 6B, 7A, 7B, 7D and frequently coincident (inversely) with leaf size QTLs. Yield in other trials was sometimes associated with ELWL and leaf size phenotypically and genotypically, but more frequently under non-droughted than droughted conditions. QTL coincidence showed only ELWL to be associated with drought/control yield ratio. Discussion Our results demonstrated that measures of ELWL and leaf size were equally effective predictors of yield, and both were more useful for selecting under favourable than stressed conditions.
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Affiliation(s)
| | - Izabela Marcińska
- Department of Biotechnology, Polish Academy of Sciences, The Franciszek Górski Institute of Plant Physiology, Kraków, Poland
| | - Edyta Skrzypek
- Department of Biotechnology, Polish Academy of Sciences, The Franciszek Górski Institute of Plant Physiology, Kraków, Poland
| | - Jan Bocianowski
- Department of Mathematical and Statistical Methods, Poznań University of Life Sciences, Poznań, Poland
| | - Kinga Dziurka
- Department of Biotechnology, Polish Academy of Sciences, The Franciszek Górski Institute of Plant Physiology, Kraków, Poland
| | - Dragana Rančić
- Faculty of Agriculture, University of Belgrade, Belgrade, Serbia
| | | | | | - Dejan Dodig
- Maize Research Institute Zemun Polje, Belgrade, Serbia
| | - Stephen Alexander Quarrie
- Newcastle University Business School, Newcastle upon Tyne, United Kingdom.,Faculty of Biology, Belgrade University, Belgrade, Serbia
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Condorelli GE, Maccaferri M, Newcomb M, Andrade-Sanchez P, White JW, French AN, Sciara G, Ward R, Tuberosa R. Comparative Aerial and Ground Based High Throughput Phenotyping for the Genetic Dissection of NDVI as a Proxy for Drought Adaptive Traits in Durum Wheat. FRONTIERS IN PLANT SCIENCE 2018; 9:893. [PMID: 29997645 PMCID: PMC6028805 DOI: 10.3389/fpls.2018.00893] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2018] [Accepted: 06/07/2018] [Indexed: 05/04/2023]
Abstract
High-throughput phenotyping platforms (HTPPs) provide novel opportunities to more effectively dissect the genetic basis of drought-adaptive traits. This genome-wide association study (GWAS) compares the results obtained with two Unmanned Aerial Vehicles (UAVs) and a ground-based platform used to measure Normalized Difference Vegetation Index (NDVI) in a panel of 248 elite durum wheat (Triticum turgidum L. ssp. durum Desf.) accessions at different growth stages and water regimes. Our results suggest increased ability of aerial over ground-based platforms to detect quantitative trait loci (QTL) for NDVI, particularly under terminal drought stress, with 22 and 16 single QTLs detected, respectively, and accounting for 89.6 vs. 64.7% phenotypic variance based on multiple QTL models. Additionally, the durum panel was investigated for leaf chlorophyll content (SPAD), leaf rolling and dry biomass under terminal drought stress. In total, 46 significant QTLs affected NDVI across platforms, 22 of which showed concomitant effects on leaf greenness, 2 on leaf rolling and 10 on biomass. Among 9 QTL hotspots on chromosomes 1A, 1B, 2B, 4B, 5B, 6B, and 7B that influenced NDVI and other drought-adaptive traits, 8 showed per se effects unrelated to phenology.
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Affiliation(s)
| | - Marco Maccaferri
- Department of Agricultural Sciences, University of Bologna, Bologna, Italy
| | - Maria Newcomb
- Maricopa Agricultural Center, University of Arizona, Tucson, AZ, United States
| | | | - Jeffrey W. White
- US Arid Land Agricultural Research Center, USDA-ARS, Maricopa, AZ, United States
| | - Andrew N. French
- US Arid Land Agricultural Research Center, USDA-ARS, Maricopa, AZ, United States
| | - Giuseppe Sciara
- Department of Agricultural Sciences, University of Bologna, Bologna, Italy
| | - Rick Ward
- Maricopa Agricultural Center, University of Arizona, Tucson, AZ, United States
| | - Roberto Tuberosa
- Department of Agricultural Sciences, University of Bologna, Bologna, Italy
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Li X, Xu J, Duan S, Bian C, Hu J, Shen H, Li G, Jin L. Pedigree-Based Deciphering of Genome-Wide Conserved Patterns in an Elite Potato Parental Line. FRONTIERS IN PLANT SCIENCE 2018; 9:690. [PMID: 29875792 PMCID: PMC5974212 DOI: 10.3389/fpls.2018.00690] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Accepted: 05/04/2018] [Indexed: 05/26/2023]
Abstract
Elite parental lines are more likely to breed fine varieties, but knowledge about elite parents and their genetic backgrounds is limited. In this paper, we investigated the pedigree relationships of potato varieties bred worldwide and in China. Several elite parents were identified, and these parents were more frequently used as parents in breeding programs across different time periods and countries. We next used 2b-RAD, a reduced-representation sequencing method, to genotype the elite parent Mira and 24 of its offspring. These cultivars span 5 generations, making this lineage the longest continuous pedigree among Chinese bred potatoes. A total of 47,314 tetraploid single nucleotide polymorphisms (SNPs) identified by FreeBayes were used to trace the conserved segments of the Mira genome. The conserved segments had identical or similar allele-specific SNPs across the analyzed genotypes. In Mira, 3,788 segments comprising over 10,000 bp, or 20.8% of the genome, were defined as conserved segments. These segments contain genes involved in crucial biological processes that are of special interest to breeders. These regions, which have been conserved across generations of highly selective breeding, may be helpful for further breeding and performing genome-wide breeding by design.
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Affiliation(s)
- Xiaochuan Li
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Tuber and Root Crops, Ministry of Agriculture, Beijing, China
- College of Horticulture, China Agricultural University, Beijing, China
- Bijie Institute of Agricultural Sciences, Bijie, China
| | - Jianfei Xu
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Tuber and Root Crops, Ministry of Agriculture, Beijing, China
| | - Shaoguang Duan
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Tuber and Root Crops, Ministry of Agriculture, Beijing, China
| | - Chunsong Bian
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Tuber and Root Crops, Ministry of Agriculture, Beijing, China
| | - Jun Hu
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Tuber and Root Crops, Ministry of Agriculture, Beijing, China
| | - Huolin Shen
- College of Horticulture, China Agricultural University, Beijing, China
| | - Guangcun Li
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Tuber and Root Crops, Ministry of Agriculture, Beijing, China
| | - Liping Jin
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Tuber and Root Crops, Ministry of Agriculture, Beijing, China
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Sreeman SM, Vijayaraghavareddy P, Sreevathsa R, Rajendrareddy S, Arakesh S, Bharti P, Dharmappa P, Soolanayakanahally R. Introgression of Physiological Traits for a Comprehensive Improvement of Drought Adaptation in Crop Plants. Front Chem 2018; 6:92. [PMID: 29692985 PMCID: PMC5903164 DOI: 10.3389/fchem.2018.00092] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Accepted: 03/14/2018] [Indexed: 11/23/2022] Open
Abstract
Burgeoning population growth, industrial demand, and the predicted global climate change resulting in erratic monsoon rains are expected to severely limit fresh water availability for agriculture both in irrigated and rainfed ecosystems. In order to remain food and nutrient secure, agriculture research needs to focus on devising strategies to save water in irrigated conditions and to develop superior cultivars with improved water productivity to sustain yield under rainfed conditions. Recent opinions accruing in the scientific literature strongly favor the adoption of a "trait based" crop improvement approach for increasing water productivity. Traits associated with maintenance of positive tissue turgor and maintenance of increased carbon assimilation are regarded as most relevant to improve crop growth rates under water limiting conditions and to enhance water productivity. The advent of several water saving agronomic practices notwithstanding, a genetic enhancement strategy of introgressing distinct physiological, morphological, and cellular mechanisms on to a single elite genetic background is essential for achieving a comprehensive improvement in drought adaptation in crop plants. The significant progress made in genomics, though would provide the necessary impetus, a clear understanding of the "traits" to be introgressed is the most essential need of the hour. Water uptake by a better root architecture, water conservation by preventing unproductive transpiration are crucial for maintaining positive tissue water relations. Improved carbon assimilation associated with carboxylation capacity and mesophyll conductance is important in sustaining crop growth rates under water limited conditions. Besides these major traits, we summarize the available information in literature on classifying various drought adaptive traits. We provide evidences that Water-Use Efficiency when introgressed with moderately higher transpiration, would significantly enhance growth rates and water productivity in rice through an improved photosynthetic capacity.
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Affiliation(s)
| | | | - Rohini Sreevathsa
- ICAR-National Research Centre for Plant Biotechnology, New Delhi, India
| | - Sowmya Rajendrareddy
- Department of Crop Physiology, University of Agricultural Sciences, Bengaluru, India
| | - Smitharani Arakesh
- Department of Crop Physiology, University of Agricultural Sciences, Bengaluru, India
| | - Pooja Bharti
- Department of Crop Physiology, University of Agricultural Sciences, Bengaluru, India
| | - Prathibha Dharmappa
- Department of Crop Physiology, University of Agricultural Sciences, Bengaluru, India
| | - Raju Soolanayakanahally
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
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40
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The Performance of Early-Generation Perennial Winter Cereals at 21 Sites across Four Continents. SUSTAINABILITY 2018. [DOI: 10.3390/su10041124] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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41
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Identification and validation of a major chromosome region for high grain number per spike under meiotic stage water stress in wheat (Triticum aestivum L.). PLoS One 2018. [PMID: 29518125 PMCID: PMC5843344 DOI: 10.1371/journal.pone.0194075] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022] Open
Abstract
Grain number is a major trait for wheat yield under dryland farming. An International Triticeae Mapping Initiative (ITMI) mapping population comprising 105 recombinant inbred lines (RIL) developed from a cross between a Synthetic hexaploid wheat (Triticum aestivum) ‘W7984’ and a spring wheat variety ‘Opata M85’ was used to identify quantitative trait loci (QTL) associated with grain number per spike under two treatment conditions, normal watering and water stress during meiosis. Two major QTL for grain number per spike on the main stem Q.Gnu.uwa-5A-1 and Q.Gnu.uwa-5A-2 with phenotypic variations of 25.71% and 24.93%, respectively, were detected on the long arm of chromosome 5A when plants were exposed to water stress during meiosis. One QTL (Q.Gnu.uwa-2A) with a LOD score of 2.8 was detected on the long arm of chromosome 2A under normal watering condition. The alleles associated with higher grain number per spike under different treatment conditions came from the Synthetic W7984 parent. Two populations developed from crosses Synthetic W7984 × Lang and Synthetic W7984 × Westonia were used to validate the identified QTL under water stress during meiosis. SSR markers Xbarc230 and Xbarc319 linked with the identified QTL on chromosome 5AL were validated in the two F2:4 segregating populations. These closely linked SSR markers could potentially be utilized in marker-assisted selection to reduce yield loss in regions where water stress during meiosis occurs frequently. The identified QTL can be incorporated into elite lines / cultivars to improve wheat grain yield.
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Ayalew H, Liu H, Börner A, Kobiljski B, Liu C, Yan G. Genome-Wide Association Mapping of Major Root Length QTLs Under PEG Induced Water Stress in Wheat. FRONTIERS IN PLANT SCIENCE 2018; 9:1759. [PMID: 30555498 PMCID: PMC6281995 DOI: 10.3389/fpls.2018.01759] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2018] [Accepted: 11/12/2018] [Indexed: 05/18/2023]
Abstract
Roots are vital plant organs that determine adaptation to various soil conditions. The present study evaluated a core winter wheat collection for rooting depth under PEG induced early stage water stress and non-stress growing conditions. Analysis of phenotypic data indicated highly significant (p < 0.01) variation among genotypes. Broad sense heritability of 59 and 73% with corresponding genetic gains of 7.6 and 9.7 (5% selection intensity) were found under non-stress and stress conditions, respectively. The test genotypes were grouped in to three distinct clusters using unweighted pair group method with arithmetic mean (UPGMA) clustering based on maximum Euclidian distance. The first three principal components gave optimum mixed linear model for genome wide association study (GWAS). Linkage disequilibrium (LD) analysis showed significant LD (p < 0.05) amongst 15% of total marker pairs (25,125). Nearly 16% of the significant LDs were among inter chromosomal marker pairs. GWAS revealed five significant root length QTLs spread across four chromosomes. None of the identified QTLs were common between the two growing conditions. Stress specific QTLs, combined explaining 31% of phenotypic variation were located on chromosomes 2B (wPt6278) and 3B (wPt1159). Similarly, two of the three QTLs (wPt0021 and wPt8890) identified under the non-stress condition were found on chromosomes 3B and 5B, respectively. The B genome showed significant importance in controlling root growth both under stress and non-stress conditions. The identified markers can potentially be validated and used for marker assisted selection.
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Affiliation(s)
- Habtamu Ayalew
- School of Agriculture and Environment, Faculty of Science, The UWA Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia
- Noble Research Institute LLC, Ardmore, OK, United States
| | - Hui Liu
- School of Agriculture and Environment, Faculty of Science, The UWA Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia
| | - Andreas Börner
- Genebank Department, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | | | - Chunji Liu
- CSIRO Agriculture Flagship, Townsville, QLD, Australia
| | - Guijun Yan
- School of Agriculture and Environment, Faculty of Science, The UWA Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia
- *Correspondence: Guijun Yan,
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Ashe P, Shaterian H, Akhov L, Kulkarni M, Selvaraj G. Contrasting Root and Photosynthesis Traits in a Large-Acreage Canadian Durum Variety and Its Distant Parent of Algerian Origin for Assembling Drought/Heat Tolerance Attributes. Front Chem 2017; 5:121. [PMID: 29312927 PMCID: PMC5735070 DOI: 10.3389/fchem.2017.00121] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2017] [Accepted: 12/04/2017] [Indexed: 11/20/2022] Open
Abstract
In Canada, the world's top exporter of high-protein durum, varietal development over its nearly six-decade history has been driven by a quest for yield improvement without compromise on grain protein content and other quality aspects. Pelissier, a landrace selection from Algeria that was introduced into North America more than a century ago and the variety Strongfield that was released in 2004 are notable. Pelissier, known to elaborate more roots and considered as drought tolerant, has been cultivated commercially and thus deemed adapted. Strongfield has Pelissier in its pedigree, and it remains a high-acreage variety. Strongfield was found to elaborate only about half of the root biomass of Pelissier at maturity in greenhouse trials under well-watered conditions. Extended drought stress caused a significant reduction in the root biomass of both lines. However, Pelissier under drought maintained at least as much root biomass as that of Strongfield under well-watered conditions. In comparison to Pelissier, it had a superior photosynthesis rate (27.16 μmol CO2 m-2 s-1), capacity for carboxylation (Vcmax: 132.83 μmol CO2 m-2 s-1) and electron transport/ribulose-1,5-bisphosphate (RuBP) regeneration (Jmax: 265.40 μmol CO2 m-2 s-1); the corresponding values for Pelissier were 19.62 μmol CO2 m-2 s-1, 91.87 μmol CO2 m-2 s-1, and 163.83 μmol CO2 m-2 s-1, respectively, under well-watered conditions. Under short-term/mild drought conditions, the carbon assimilation rate remained stable in Pelissier while it declined in Strongfield to the Pelissier level. However, Strongfield succumbed to extended drought sooner than Pelissier. Photosynthesis in Strongfield but not Pelissier was found to be sensitive to high temperature stress. These results provide encouraging prospects for further exploitation of beneficial physiological traits from Pelissier in constructing climate-resilient, agronomically favorable wheat ideotypes.
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Petit J, Bres C, Mauxion JP, Bakan B, Rothan C. Breeding for cuticle-associated traits in crop species: traits, targets, and strategies. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:5369-5387. [PMID: 29036305 DOI: 10.1093/jxb/erx341] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Accepted: 09/14/2017] [Indexed: 05/18/2023]
Abstract
Improving crop productivity and quality while promoting sustainable agriculture have become major goals in plant breeding. The cuticle is a natural film covering the aerial organs of plants and consists of lipid polyesters covered and embedded with wax. The cuticle protects plants against water loss and pathogens and affects traits with strong impacts on crop quality such as, for horticultural crops, fruit brightness, cracking, russeting, netting, and shelf life. Here we provide an overview of the most important cuticle-associated traits that can be targeted for crop improvement. To date, most studies on cuticle-associated traits aimed at crop breeding have been done on fleshy fruits. Less information is available for staple crops such as rice, wheat or maize. Here we present new insights into cuticle formation and properties resulting from the study of genetic resources available for the various crop species. Our review also covers the current strategies and tools aimed at exploiting available natural and artificially induced genetic diversity and the technologies used to transfer the beneficial alleles affecting cuticle-associated traits to commercial varieties.
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Affiliation(s)
- Johann Petit
- UMR 1332 BFP, INRA, Univ. Bordeaux, F-33140 Villenave d'Ornon, France
| | - Cécile Bres
- UMR 1332 BFP, INRA, Univ. Bordeaux, F-33140 Villenave d'Ornon, France
| | | | | | - Christophe Rothan
- UMR 1332 BFP, INRA, Univ. Bordeaux, F-33140 Villenave d'Ornon, France
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45
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Cell Membrane Stability and Association Mapping for Drought and Heat Tolerance in a Worldwide Wheat Collection. SUSTAINABILITY 2017. [DOI: 10.3390/su9091606] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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46
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Becker E, Schmidhalter U. Evaluation of Yield and Drought Using Active and Passive Spectral Sensing Systems at the Reproductive Stage in Wheat. FRONTIERS IN PLANT SCIENCE 2017; 8:379. [PMID: 28424706 PMCID: PMC5372809 DOI: 10.3389/fpls.2017.00379] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2017] [Accepted: 03/06/2017] [Indexed: 05/04/2023]
Abstract
Active and passive sensors are available for ground-based, high-throughput phenotyping in the field. However, these sensor systems have seldom been compared with respect to their determination of plant water status and water use efficiency related parameters under drought conditions. In this study, five passive and active reflectance sensors, including a hyperspectral passive sensor, an active flash sensor (AFS), the Crop Circle, and the GreenSeeker, were evaluated to assess drought-related destructive and non-destructive morphophysiological parameters (ground cover, relative leaf water content, leaf temperature, and carbon isotope discrimination of leaves and grain) and grain yield of twenty wheat (Triticum aestivum L.) cultivars. Measurements were conducted in a 2-year study, including a drought stress and a control environment under field conditions. A comparison of the active sensors at the heading, anthesis and grain-filling stages indicated that the Crop Circle provided the most significant and robust relationships with drought-related parameters (relative leaf water content and leaf and grain carbon isotope discrimination). In comparison with the passive sensor, the five water and normalized water indices (WI and NWI-1 to 4), which are only provided by the passive sensor, showed the strongest relationships with the drought stress-related parameters (r = -0.49 to -0.86) and grain yield (r = -0.88) at anthesis. This paper indicates that precision phenotyping allows the integration of water indices in breeding programs to rapidly and cost-effectively identify drought-tolerant genotypes. This is supported by the fact that grain yield and the water indices showed the same heritability under drought conditions.
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Affiliation(s)
| | - Urs Schmidhalter
- Department of Plant Science, Chair of Plant Nutrition, Technical University of MunichFreising, Germany
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47
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Sabiel SAI, Huang S, Hu X, Ren X, Fu C, Peng J, Sun D. SNP-based association analysis for seedling traits in durum wheat ( Triticum turgidum L. durum (Desf.)). BREEDING SCIENCE 2017; 67:83-94. [PMID: 28588384 PMCID: PMC5445962 DOI: 10.1270/jsbbs.16074] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Accepted: 10/26/2016] [Indexed: 06/07/2023]
Abstract
In the present study, 150 accessions of worldwide originated durum wheat germplasm (Triticum turgidum spp. durum) were observed for major seedling traits and their growth. The accessions were evaluated for major seedling traits under controlled conditions of hydroponics at the 13th, 20th, 27th and 34th day-after germination. Biomass traits were measured at the 34th day-after germination. Correlation analysis was conducted among the seedling traits and three field traits at maturity, plant height, grain weight and 1000-grain weight observed in four consecutive years. Associations of the measured seedling traits and SNP markers were analyzed based on the mixed linear model (MLM). The results indicated that highly significant genetic variation and robust heritability were found for the seedling and field mature traits. In total, 259 significant associations were detected for all the traits and four growth stages. The phenotypic variation explained (R2) by a single SNP marker is higher than 10% for most (84%) of the significant SNP markers. Forty-six SNP markers associated with multiple traits, indicating non-neglectable pleiotropy in seedling stage. The associated SNP markers could be helpful for genetic analysis of seedling traits, and marker-assisted breeding of new wheat varieties with strong seedling vigor.
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Affiliation(s)
- Salih A. I. Sabiel
- College of Plant Science and Technology, Huazhong Agricultural University,
Wuhan Hubei, 430070,
China
- Plant Breeding Program, Agricultural Research Corporation,
Wad Medani, P. O. Box 126,
Sudan
| | - Sisi Huang
- College of Plant Science and Technology, Huazhong Agricultural University,
Wuhan Hubei, 430070,
China
| | - Xin Hu
- College of Plant Science and Technology, Huazhong Agricultural University,
Wuhan Hubei, 430070,
China
| | - Xifeng Ren
- College of Plant Science and Technology, Huazhong Agricultural University,
Wuhan Hubei, 430070,
China
| | - Chunjie Fu
- Life Science and Technology Center of China National Seed Group Co., Ltd., and the State Key Laboratory of Crop Breeding Technology Innovation and Integration,
Wuhan, Hubei, 430206,
China
| | - Junhua Peng
- Life Science and Technology Center of China National Seed Group Co., Ltd., and the State Key Laboratory of Crop Breeding Technology Innovation and Integration,
Wuhan, Hubei, 430206,
China
| | - Dongfa Sun
- College of Plant Science and Technology, Huazhong Agricultural University,
Wuhan Hubei, 430070,
China
- Hubei Collaborative Innovation Center for Grain Industry,
Jingzhou, Hubei, 434025,
China
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48
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Des Marais DL, Razzaque S, Hernandez KM, Garvin DF, Juenger TE. Quantitative trait loci associated with natural diversity in water-use efficiency and response to soil drying in Brachypodium distachyon. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2016; 251:2-11. [PMID: 27593458 DOI: 10.1016/j.plantsci.2016.03.010] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2016] [Revised: 03/18/2016] [Accepted: 03/23/2016] [Indexed: 05/25/2023]
Abstract
All plants must optimize their growth with finite resources. Water use efficiency (WUE) measures the relationship between biomass acquisition and transpired water. In the present study, we performed two experiments to understand the genetic basis of WUE and other parameters of plant-water interaction under control and water-limited conditions. Our study used two inbred natural accessions of Brachypodium distachyon, a model grass species with close phylogenetic affinity to temperate forage and cereal crops. First, we identify the soil water content which causes a reduction in leaf relative water content and an increase in WUE. Second, we present results from a large phenotyping experiment utilizing a recombinant inbred line mapping population derived from these same two natural accessions. We identify QTLs associated with environmentally-insensitive genetic variation in WUE, including a pair of epistatically interacting loci. We also identify QTLs associated with constitutive differences in biomass and a QTL describing an environmentally-sensitive difference in leaf carbon content. Finally, we present a new linkage map for this mapping population based on new SNP markers as well as updated genomic positions for previously described markers. Our studies provide an initial characterization of plant-water relations in B. distachyon and identify candidate genomic regions involved in WUE.
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Affiliation(s)
- David L Des Marais
- Department of Integrative Biology and Institute for Cell and Molecular Biology, The University of Texas at Austin, United States.
| | - Samsad Razzaque
- Department of Integrative Biology and Institute for Cell and Molecular Biology, The University of Texas at Austin, United States
| | - Kyle M Hernandez
- Department of Integrative Biology and Institute for Cell and Molecular Biology, The University of Texas at Austin, United States
| | - David F Garvin
- U.S. Department of Agriculture-Agricultural Research Service, Plant Science Research Unit, St. Paul, MN, United States
| | - Thomas E Juenger
- Department of Integrative Biology and Institute for Cell and Molecular Biology, The University of Texas at Austin, United States
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49
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Mwadzingeni L, Shimelis H, Tesfay S, Tsilo TJ. Screening of Bread Wheat Genotypes for Drought Tolerance Using Phenotypic and Proline Analyses. FRONTIERS IN PLANT SCIENCE 2016; 7:1276. [PMID: 27610116 PMCID: PMC4997044 DOI: 10.3389/fpls.2016.01276] [Citation(s) in RCA: 64] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2015] [Accepted: 08/10/2016] [Indexed: 05/18/2023]
Abstract
Drought stress is one of the leading constraints to wheat (Triticum aestivum L.) production globally. Breeding for drought tolerance using novel genetic resources is an important mitigation strategy. This study aimed to determine the level of drought tolerance among diverse bread wheat genotypes using agronomic traits and proline analyses and to establish correlation of proline content and agronomic traits under drought-stress conditions in order to select promising wheat lines for breeding. Ninety-six diverse genotypes including 88 lines from the International Maize and Wheat Improvement Center (CIMMYT)'s heat and drought nurseries, and eight local checks were evaluated under greenhouse and field conditions during 2014/15 and 2015/16 making four testing environments. The following phenotypic traits were collected after stress imposed during the heading to anthesis period: the number of days to heading (DTH), days to maturity (DTM), productive tiller number (TN), plant height (PH), spike length (SL), spikelet per spike (SPS), kernels per spike (KPS), thousand kernel weight (TKW) and grain yield (GY) and proline content (PC). Analysis of variance, Pearson's correlation coefficient, principal component and stress tolerance index were calculated. Genotypes with high yield performance under stressed and optimum conditions maintained high values for yield components. Proline content significantly increased under stress, but weakly correlated with agronomic traits under both optimal and water limited conditions. The positive correlation observed between grain yield and proline content under-drought stress conditions provides evidence that proline accumulation might ultimately be considered as a tool for effective selection of drought tolerant genotypes. The study selected 12 genotypes with high grain yields under drought stressed conditions and favorable adaptive traits useful for breeding.
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Affiliation(s)
- Learnmore Mwadzingeni
- School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-NatalPietermaritzburg, South Africa
- Agricultural Research Council-Small Grain InstituteBethlehem, South Africa
| | - Hussein Shimelis
- School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-NatalPietermaritzburg, South Africa
| | - Samson Tesfay
- School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-NatalPietermaritzburg, South Africa
| | - Toi J. Tsilo
- Agricultural Research Council-Small Grain InstituteBethlehem, South Africa
- Department of Life and Consumer Sciences, University of South AfricaPretoria, South Africa
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50
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Daryanto S, Wang L, Jacinthe PA. Global Synthesis of Drought Effects on Maize and Wheat Production. PLoS One 2016; 11:e0156362. [PMID: 27223810 PMCID: PMC4880198 DOI: 10.1371/journal.pone.0156362] [Citation(s) in RCA: 263] [Impact Index Per Article: 32.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2016] [Accepted: 05/12/2016] [Indexed: 11/17/2022] Open
Abstract
Drought has been a major cause of agricultural disaster, yet how it affects the vulnerability of maize and wheat production in combination with several co-varying factors (i.e., phenological phases, agro-climatic regions, soil texture) remains unclear. Using a data synthesis approach, this study aims to better characterize the effects of those co-varying factors with drought and to provide critical information on minimizing yield loss. We collected data from peer-reviewed publications between 1980 and 2015 which examined maize and wheat yield responses to drought using field experiments. We performed unweighted analysis using the log response ratio to calculate the bootstrapped confidence limits of yield responses and calculated drought sensitivities with regards to those co-varying factors. Our results showed that yield reduction varied with species, with wheat having lower yield reduction (20.6%) compared to maize (39.3%) at approximately 40% water reduction. Maize was also more sensitive to drought than wheat, particularly during reproductive phase and equally sensitive in the dryland and non-dryland regions. While no yield difference was observed among regions or different soil texture, wheat cultivation in the dryland was more prone to yield loss than in the non-dryland region. Informed by these results, we discuss potential causes and possible approaches that may minimize drought impacts.
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Affiliation(s)
- Stefani Daryanto
- Department of Earth Sciences, Indiana University-Purdue University Indianapolis (IUPUI), Indianapolis, 46202, United States of America
| | - Lixin Wang
- Department of Earth Sciences, Indiana University-Purdue University Indianapolis (IUPUI), Indianapolis, 46202, United States of America
| | - Pierre-André Jacinthe
- Department of Earth Sciences, Indiana University-Purdue University Indianapolis (IUPUI), Indianapolis, 46202, United States of America
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