1
|
Aguiar BADS, Lopes CGR, de Sousa GM, E Medeiros MJL, da Silva KA, Araújo EDL. Effect of simulated extreme rainfall on the vegetative phenology of perennial and annual herbaceous plants from a Brazilian dry forest. PLANT BIOLOGY (STUTTGART, GERMANY) 2024; 26:868-877. [PMID: 38967326 DOI: 10.1111/plb.13674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 05/07/2024] [Indexed: 07/06/2024]
Abstract
Detecting changes in the phenological responses of herbaceous species as a function of predicted climate change is important for forecasting future scenarios for the functioning of dry tropical forests, especially when predicting an increase in the frequency and intensity of extreme droughts. Because of the sensitivity of plants to water availability, our study hypothesizes that if years become drier or wetter, herbaceous plants will synchronously change the onset, duration, and intensity of their vegetative phenophases. We used a historical series of 60 years of precipitation observations for the Caatinga vegetation to define daily average of precipitation for rainy (Twet), median (Tcontrol), and dry (Tdry) years. We simulated past average daily rainfall (Twet, Tcontrol, and Tdry) while growing two herbaceous perennials and two herbaceous annuals. We monitored plant growth and measured the activity (absence or presence) and intensity of vegetative phenophases. We used circular statistical analysis to assess differences between treatments. Our results revealed that leaf production was seasonal but relatively uniform for perennial species and highly seasonal (wet season) for annual species. Simulated dry years induced lower leaf emergence concentrated over a few months in annual species, but this effect was more strongly significant in one of the two perennial species. Both annual and perennial species can experience delayed and less intense leaf abscission during the rainy season in years with below-average precipitation. In contrast, large voluminous rains in years with above-average precipitation can accelerate and intensify the process of leaf renewal. If future precipitation reductions occur, the changes in phenological response indicate that the cover of annual and perennial herbaceous species in this study will likely decrease, altering the landscape and functioning of dry tropical forests. However, the potential trade-offs observed may help populations of these species to persist during years of severe drought in the Caatinga.
Collapse
Affiliation(s)
- B A de S Aguiar
- Centro de Ciências da Natureza, Universidade Federal do Piauí, Teresina, Brazil
| | - C G R Lopes
- Centro de Ciências da Natureza, Universidade Federal do Piauí, Teresina, Brazil
| | - G M de Sousa
- Centro de Ciências da Natureza, Universidade Federal do Piauí, Teresina, Brazil
| | - M J L E Medeiros
- Centro de Ciências da Natureza, Universidade Federal do Piauí, Teresina, Brazil
| | - K A da Silva
- Centro Acadêmico de Vitória (CAV), Universidade Federal de Pernambuco, Recife, Brazil
| | - E de L Araújo
- Departamento de Botânica, Universidade Federal de Pernambuco, Recife, Brazil
| |
Collapse
|
2
|
Zhou Z, Li J, Gao Y, Wang X, Wang R, Huang H, Zhang Y, Zhao L, Wang P. Research on drought stress in Medicago sativa L. from 1998 to 2023: a bibliometric analysis. FRONTIERS IN PLANT SCIENCE 2024; 15:1406256. [PMID: 38872890 PMCID: PMC11169798 DOI: 10.3389/fpls.2024.1406256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Accepted: 05/13/2024] [Indexed: 06/15/2024]
Abstract
Alfalfa (Medicago sativa L.) is one of the most important forage crops in the world. Drought is recognized as a major challenge limiting alfalfa production and threatening food security. Although some literature reviews have been conducted in this area, bibliometric reviews based on large amounts of published data are still lacking. In this paper, a bibliometric analysis of alfalfa drought stress from 1998-2023 was conducted using the Web of Science Core Collection database in order to assess global trends in alfalfa drought stress research and to provide new directions for future research. The results showed that the annual publication output maintained an increase in most years, with China and the United States contributing significantly to the field. Most of the journals published are specialized journals in botany, environmental science, soil science and crop science, as well as related agribusiness journals. "plant growth" and "yield" were the most frequently used keywords, reflecting the important purpose of research in this field. And two main research directions were identified: research on drought response mechanism of alfalfa and exploration of drought-resistant technology. In addition, physiological, biochemical, and molecular responses of drought tolerance and high yield in alfalfa, transgenics, and microbial fertilizer research have been hot research topics in recent years and may continue in the future. The ultimate goal of this paper is to provide a foundational reference for future research on alfalfa's drought resistance and yield optimization mechanisms, thereby enhancing the crop's application in agricultural production.
Collapse
Affiliation(s)
- Zijun Zhou
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Junqin Li
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Yang Gao
- School of Karst Science, Guizhou Normal University, Guiyang, Guizhou, China
| | - Xiangtao Wang
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Rui Wang
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Haiyan Huang
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Yu Zhang
- School of Karst Science, Guizhou Normal University, Guiyang, Guizhou, China
| | - Lili Zhao
- College of Animal Science, Guizhou University, Guiyang, Guizhou, China
| | - Puchang Wang
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| |
Collapse
|
3
|
Jones DM, Hepworth J, Wells R, Pullen N, Trick M, Morris RJ. A transcriptomic time-series reveals differing trajectories during pre-floral development in the apex and leaf in winter and spring varieties of Brassica napus. Sci Rep 2024; 14:3538. [PMID: 38347020 PMCID: PMC10861513 DOI: 10.1038/s41598-024-53526-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 01/31/2024] [Indexed: 02/15/2024] Open
Abstract
Oilseed rape (Brassica napus) is an important global oil crop, with spring and winter varieties grown commercially. To understand the transcriptomic differences between these varieties, we collected transcriptomes from apex and leaf tissue from a spring variety, Westar, and a winter variety, Tapidor, before, during, and after vernalisation treatment, until the plants flowered. Large transcriptomic differences were noted in both varieties during the vernalisation treatment because of temperature and day length changes. Transcriptomic alignment revealed that the apex transcriptome reflects developmental state, whereas the leaf transcriptome is more closely aligned to the age of the plant. Similar numbers of copies of genes were expressed in both varieties during the time series, although key flowering time genes exhibited expression pattern differences. BnaFLC copies on A2 and A10 are the best candidates for the increased vernalisation requirement of Tapidor. Other BnaFLC copies show tissue-dependent reactivation of expression post-cold, with these dynamics suggesting some copies have retained or acquired a perennial nature. BnaSOC1 genes, also related to the vernalisation pathway, have expression profiles which suggest tissue subfunctionalisation. This understanding may help to breed varieties with more consistent or robust vernalisation responses, of special importance due to the milder winters resulting from climate change.
Collapse
Affiliation(s)
- D Marc Jones
- Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
- Synthace, The WestWorks, 195 Wood Lane, 4th Floor, London, W12 7FQ, UK.
| | - Jo Hepworth
- Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
- Department of Biosciences, Durham University, Stockton Road, Durham, DH1 3LE, UK
| | - Rachel Wells
- Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
| | - Nick Pullen
- Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
| | - Martin Trick
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
| | - Richard J Morris
- Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
| |
Collapse
|
4
|
Schepers JR, Heblack J, Willi Y. Negative interaction effect of heat and drought stress at the warm end of species distribution. Oecologia 2024; 204:173-185. [PMID: 38253704 PMCID: PMC10830594 DOI: 10.1007/s00442-023-05497-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Accepted: 12/10/2023] [Indexed: 01/24/2024]
Abstract
Geographic range limits of species are often a reflection of their ecological niche limits. In many organisms, important niche limits that coincide with distribution limits are warm and warm-dry conditions. We investigated the effects of heat and drought, as they can occur at the warm end of distribution. In a greenhouse experiment, we raised North American Arabidopsis lyrata from the centre of its distribution as well as from low- and high-latitude limits under average and extreme conditions. We assessed plant growth and development, as well as leaf and root functional traits, and tested for a decline in performance and selection acting on growth, leaf, and root traits. Drought and heat, when applied alone, lowered plant performance, while combined stress caused synergistically negative effects. Plants from high latitudes did not survive under combined stress, whereas plants originating from central and low latitudes had low to moderate survival, indicating divergent adaptation. Traits positively associated with survival under drought, with or without heat, were delayed and slowed growth, though plastic responses in these traits were generally antagonistic to the direction of selection. In line, higher tolerance of stress in southern populations did not involve aspects of growth but rather a higher root-to-shoot ratio and thinner leaves. In conclusion, combined heat and drought, as can occur at southern range edges and presumably more so under global change, seriously impede the long-term persistence of A. lyrata, even though they impose selection and populations may adapt, though under likely interference by considerable maladaptive plasticity.
Collapse
Affiliation(s)
- Judith R Schepers
- Department of Environmental Sciences, University of Basel, 4056, Basel, Switzerland.
| | - Jessica Heblack
- Department of Environmental Sciences, University of Basel, 4056, Basel, Switzerland
| | - Yvonne Willi
- Department of Environmental Sciences, University of Basel, 4056, Basel, Switzerland
| |
Collapse
|
5
|
Echarte L, Alfonso CS, González H, Hernández MD, Lewczuk NA, Nagore L, Echarte MM. Influence of management practices on water-related grain yield determinants. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:4825-4846. [PMID: 37490359 DOI: 10.1093/jxb/erad269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 07/24/2023] [Indexed: 07/27/2023]
Abstract
Adequate management of N supply, plant density, row spacing, and soil cover has proved useful for increasing grain yields and/or grain yield stability of rainfed crops over the years. We review the impact of these management practices on grain yield water-related determinants: seasonal crop evapotranspiration (ET) and water use efficiency for grain production per unit of evapotranspired water during the growing season (WUEG,ET,s). We highlight a large number of conflicting results for the impact of management on ET and expose the complexity of the ET response to environmental factors. We analyse the influence of management practices on WUEG,ET,s in terms of the three main processes controlling it: (i) the proportion of transpiration in ET (T/ET), (ii) transpiration efficiency for shoot biomass production (TEB), and (iii) the harvest index. We directly relate the impact of management practices on T/ET to their effect on crop light interception and provide evidence that management practices significantly influence TEB. To optimize WUEG,ET,s, management practices should favor soil water availability during critical periods for seed set, thereby improving the harvest index. The need to improve the performance of existing crop growth models for the prediction of water-related grain yield determinants under different management practices is also discussed.
Collapse
Affiliation(s)
- Laura Echarte
- IPADS (INTA-CONICET), Ruta 226 Km 73.5, Balcarce, Argentina
- Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata, Ruta 226 Km 73.5, Balcarce, Argentina
| | - Carla S Alfonso
- Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata, Ruta 226 Km 73.5, Balcarce, Argentina
| | - Hugo González
- IPADS (INTA-CONICET), Ruta 226 Km 73.5, Balcarce, Argentina
| | - Mariano D Hernández
- Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata, Ruta 226 Km 73.5, Balcarce, Argentina
| | | | - Luján Nagore
- Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata, Ruta 226 Km 73.5, Balcarce, Argentina
| | | |
Collapse
|
6
|
Taleghani D, Rajabi A, Saremirad A, Fasahat P. Stability analysis and selection of sugar beet (Beta vulgaris L.) genotypes using AMMI, BLUP, GGE biplot and MTSI. Sci Rep 2023; 13:10019. [PMID: 37340073 PMCID: PMC10281985 DOI: 10.1038/s41598-023-37217-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Accepted: 06/18/2023] [Indexed: 06/22/2023] Open
Abstract
The methods utilized to analyze genotype by environment interaction (GEI) and assess the stability and adaptability of genotypes are constantly changing and developing. In this regard, often instead of depending on a single analysis, it is better to use a combination of several methods to measure the nature of the GEI from various dimensions. In this study, the GEI was investigated using different methods. For this purpose, 18 sugar beet genotypes were evaluated in randomized complete block design in five research stations over 2 years. The additive effects analysis of the additive main effects and multiplicative interaction (AMMI) model showed that the effects of genotype, environment and GEI were significant for root yield (RY), white sugar yield (WSY), sugar content (SC), and extraction coefficient of sugar (ECS). The multiplicative effect's analysis of AMMI into interaction principal components (IPCs) showed that the number of significant components varies from one to four in the studied traits. According to the biplot of the mean yield against the weighted average of absolute scores (WAAS) of the IPCs, G2 and G16 for RY, G16 and G2 for WSY, G6, G4, and G1 for SC and G8, G10 and G15 for ECS were identified as stable genotypes with optimum performance. The likelihood ratio test showed that the effects of genotype and GEI was significant for all studied traits. In terms of RY and WSY, G3 and G4 had high mean values of the best linear unbiased predictions (BLUP), so they were identified as suitable genotypes. However, in terms of SC and ECS, G15 obtained high mean values of the BLUP. The GGE biplot method classified environments into four (RY and ECS) and three (WSY and SC) mega-environments (MEs). Based on the multi-trait stability index (MTSI), G15, G10, G6, and G1 were the most ideal genotypes.
Collapse
Affiliation(s)
- Dariush Taleghani
- Sugar Beet Seed Institute (SBSI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran.
| | - Abazar Rajabi
- Sugar Beet Seed Institute (SBSI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran
| | - Ali Saremirad
- Sugar Beet Seed Institute (SBSI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran
| | - Parviz Fasahat
- Sugar Beet Seed Institute (SBSI), Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran
| |
Collapse
|
7
|
Afridi MS, Ali S, Salam A, César Terra W, Hafeez A, Ali B, S AlTami M, Ameen F, Ercisli S, Marc RA, Medeiros FHV, Karunakaran R. Plant Microbiome Engineering: Hopes or Hypes. BIOLOGY 2022; 11:biology11121782. [PMID: 36552290 PMCID: PMC9774975 DOI: 10.3390/biology11121782] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 11/29/2022] [Accepted: 11/30/2022] [Indexed: 12/13/2022]
Abstract
Rhizosphere microbiome is a dynamic and complex zone of microbial communities. This complex plant-associated microbial community, usually regarded as the plant's second genome, plays a crucial role in plant health. It is unquestioned that plant microbiome collectively contributes to plant growth and fitness. It also provides a safeguard from plant pathogens, and induces tolerance in the host against abiotic stressors. The revolution in omics, gene-editing and sequencing tools have somehow led to unravel the compositions and latent interactions between plants and microbes. Similarly, besides standard practices, many biotechnological, (bio)chemical and ecological methods have also been proposed. Such platforms have been solely dedicated to engineer the complex microbiome by untangling the potential barriers, and to achieve better agriculture output. Yet, several limitations, for example, the biological obstacles, abiotic constraints and molecular tools that capably impact plant microbiome engineering and functionality, remained unaddressed problems. In this review, we provide a holistic overview of plant microbiome composition, complexities, and major challenges in plant microbiome engineering. Then, we unearthed all inevitable abiotic factors that serve as bottlenecks by discouraging plant microbiome engineering and functionality. Lastly, by exploring the inherent role of micro/macrofauna, we propose economic and eco-friendly strategies that could be harnessed sustainably and biotechnologically for resilient plant microbiome engineering.
Collapse
Affiliation(s)
- Muhammad Siddique Afridi
- Department of Plant Pathology, Federal University of Lavras, (UFLA), Lavras 37200-900, MG, Brazil
| | - Sher Ali
- Department of Food Engineering, Faculty of Animal Science and Food Engineering, University of São Paulo (USP), Pirassununga 13635-900, SP, Brazil
| | - Abdul Salam
- Zhejiang Key Laboratory of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Willian César Terra
- Department of Plant Pathology, Federal University of Lavras, (UFLA), Lavras 37200-900, MG, Brazil
| | - Aqsa Hafeez
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad 45320, Pakistan
| | - Baber Ali
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad 45320, Pakistan
| | - Mona S AlTami
- Biology Department, College of Science, Qassim University, Burydah 52571, Saudi Arabia
| | - Fuad Ameen
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Sezai Ercisli
- Department of Horticulture, Faculty of Agriculture, Ataturk University, 25240 Erzurum, Turkey
| | - Romina Alina Marc
- Food Engineering Department, Faculty of Food Science and Technology, University of Agricultural Science and Veterinary Medicine Cluj-Napoca, 3-5 Calea Mănă ̧stur Street, 400372 Cluj-Napoca, Romania
| | - Flavio H V Medeiros
- Department of Plant Pathology, Federal University of Lavras, (UFLA), Lavras 37200-900, MG, Brazil
| | - Rohini Karunakaran
- Unit of Biochemistry, Centre of Excellence for Biomaterials Engineering, Faculty of Medicine, AIMST University, Semeling, Bedong 08100, Malaysia
- Department of Computational Biology, Institute of Bioinformatics, Saveetha School of Engineering (SSE), SIMATS, Thandalam, Chennai 602105, Tamil Nadu, India
- Centre of Excellence for Biomaterials Science, AIMST University, Semeling, Bedong 08100, Malaysia
| |
Collapse
|
8
|
Müller A, Correa MZ, Führ CS, Padoin TOH, de Quevedo DM, Schmitt JL. Phenology of Araucaria Forest fern communities: comparison of the influence of natural edge, artificial edge, and forest interior. INTERNATIONAL JOURNAL OF BIOMETEOROLOGY 2022; 66:2259-2271. [PMID: 36074272 DOI: 10.1007/s00484-022-02354-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Revised: 08/11/2022] [Accepted: 08/16/2022] [Indexed: 06/15/2023]
Abstract
The edge effect, triggered by habitat fragmentation, alters forest microclimates and influences the life cycle of plants. Phenology may indicate the first changes in phenological patterns in response to the effects of climate change. Climate regulates the phenology of ferns and climatic triggers influence plants in tropical and subtropical regions differently. This study analyzed and compared the phenology of fern communities of three sub-areas - natural edge, artificial edge, and forest interior - of a fragment of Araucaria Forest in the Floresta Nacional de São Francisco de Paula, Rio Grande do Sul, Brazil, and its relationship with meteorological, astronomical, and edaphic variables. Abiotic and edaphic data were monitored concomitantly with phenological data (leaf renewal and senescence and sporangia formation) in each sub-area over a biennium. Temperature, air humidity, and soil moisture, which undergo changes with the edge effect, influenced edge plants. Leaf renewal was the main phenophase showing strong indication of changes in vegetative patterns in natural and artificial edge communities. Among the communities, that of the artificial edge signaled phenological changes that could compromise the development of ferns if effects intensify over time. In this respect, the phenology of artificial edge ferns differed from that of plants growing in originally natural formations (natural edge and forest interior), showing that exogenous transformations represent a new environmental situation for ferns to develop.
Collapse
Affiliation(s)
- Andressa Müller
- Laboratório de Botânica, Instituto de Ciências da Saúde, Universidade Feevale, ERS-239-2755, Novo Hamburgo, 93525-075, Brazil.
- Programa de Pós-Graduação Em Qualidade Ambiental, Universidade Feevale, Novo Hamburgo, Brazil.
| | - Marina Zimmer Correa
- Laboratório de Botânica, Instituto de Ciências da Saúde, Universidade Feevale, ERS-239-2755, Novo Hamburgo, 93525-075, Brazil
- Programa de Pós-Graduação Em Oceanografia Biológica, Universidade Federal Do Rio Grande, Rio Grande, Brazil
| | - Camila Storck Führ
- Laboratório de Botânica, Instituto de Ciências da Saúde, Universidade Feevale, ERS-239-2755, Novo Hamburgo, 93525-075, Brazil
| | - Thábia Ottília Hofstetter Padoin
- Laboratório de Botânica, Instituto de Ciências da Saúde, Universidade Feevale, ERS-239-2755, Novo Hamburgo, 93525-075, Brazil
- Programa de Pós-Graduação Em Qualidade Ambiental, Universidade Feevale, Novo Hamburgo, Brazil
| | - Daniela Müller de Quevedo
- Programa de Pós-Graduação Em Qualidade Ambiental, Universidade Feevale, Novo Hamburgo, Brazil
- Instituto de Ciências Sociais Aplicadas, Universidade Feevale, Novo Hamburgo, Brazil
| | - Jairo Lizandro Schmitt
- Laboratório de Botânica, Instituto de Ciências da Saúde, Universidade Feevale, ERS-239-2755, Novo Hamburgo, 93525-075, Brazil
- Programa de Pós-Graduação Em Qualidade Ambiental, Universidade Feevale, Novo Hamburgo, Brazil
- Mestrado Profissional Análise de Sistemas Ambientais, Centro Universitário CESMAC, Maceió, Alagoas, Brazil
| |
Collapse
|
9
|
D'Oria A, Courbet G, Billiot B, Jing L, Pluchon S, Arkoun M, Maillard A, Roux CP, Trouverie J, Etienne P, Diquélou S, Ourry A. Drought specifically downregulates mineral nutrition: Plant ionomic content and associated gene expression. PLANT DIRECT 2022; 6:e402. [PMID: 35949952 PMCID: PMC9356223 DOI: 10.1002/pld3.402] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 03/28/2022] [Accepted: 04/01/2022] [Indexed: 06/02/2023]
Abstract
One of the main limiting factors of plant yield is drought, and while the physiological responses to this environmental stress have been broadly described, research addressing its impact on mineral nutrition is scarce. Brassica napus and Triticum aestivum were subjected to moderate or severe water deficit, and their responses to drought were assessed by functional ionomic analysis, and derived calculation of the net uptake of 20 nutrients. While the uptake of most mineral nutrients decreased, Fe, Zn, Mn, and Mo uptake were impacted earlier and at a larger scale than most physiological parameters assessed (growth, ABA concentration, gas exchanges and photosynthetic activity). Additionally, in B. napus, the patterns of 183 differentially expressed genes in leaves related to the ionome (known ionomic genes, KIGs) or assumed to be involved in transport of a given nutrient were analyzed. This revealed three patterns of gene expression under drought consisting of up (transport of Cl and Co), down (transport of N, P, B, Mo, and Ni), or mixed levels (transport of S, Mg, K, Zn, Fe, Cu, or Mn) of regulation. The three patterns of gene regulations are discussed in relation to specific gene functions, changes of leaf ionomic composition and with consideration of the crosstalks that have been established between elements. It is suggested that the observed reduction in Fe uptake occurred via a specific response to drought, leading indirectly to reduced uptake of Zn and Mn, and these may be taken up by common transporters encoded by genes that were downregulated.
Collapse
Affiliation(s)
- Aurélien D'Oria
- UMR 950 Ecophysiologie Végétale, Agronomie et Nutritions N, C, S, Normandie Université, UNICAENINRAECaenFrance
- Laboratoire de Nutrition Végétale, Centre Mondial de l'InnovationLe Groupe RoullierSaint‐MaloFrance
| | - Galatéa Courbet
- UMR 950 Ecophysiologie Végétale, Agronomie et Nutritions N, C, S, Normandie Université, UNICAENINRAECaenFrance
| | - Bastien Billiot
- Laboratoire de Nutrition Végétale, Centre Mondial de l'InnovationLe Groupe RoullierSaint‐MaloFrance
| | - Lun Jing
- Laboratoire de Nutrition Végétale, Centre Mondial de l'InnovationLe Groupe RoullierSaint‐MaloFrance
| | - Sylvain Pluchon
- Laboratoire de Nutrition Végétale, Centre Mondial de l'InnovationLe Groupe RoullierSaint‐MaloFrance
| | - Mustapha Arkoun
- Laboratoire de Nutrition Végétale, Centre Mondial de l'InnovationLe Groupe RoullierSaint‐MaloFrance
| | - Anne Maillard
- Laboratoire de Nutrition Végétale, Centre Mondial de l'InnovationLe Groupe RoullierSaint‐MaloFrance
| | | | - Jacques Trouverie
- UMR 950 Ecophysiologie Végétale, Agronomie et Nutritions N, C, S, Normandie Université, UNICAENINRAECaenFrance
| | - Philippe Etienne
- UMR 950 Ecophysiologie Végétale, Agronomie et Nutritions N, C, S, Normandie Université, UNICAENINRAECaenFrance
| | - Sylvain Diquélou
- UMR 950 Ecophysiologie Végétale, Agronomie et Nutritions N, C, S, Normandie Université, UNICAENINRAECaenFrance
| | - Alain Ourry
- UMR 950 Ecophysiologie Végétale, Agronomie et Nutritions N, C, S, Normandie Université, UNICAENINRAECaenFrance
| |
Collapse
|
10
|
Medina‐Vega JA, Wright SJ, Bongers F, Schnitzer SA, Sterck FJ. Vegetative phenologies of lianas and trees in two Neotropical forests with contrasting rainfall regimes. THE NEW PHYTOLOGIST 2022; 235:457-471. [PMID: 35388492 PMCID: PMC9325559 DOI: 10.1111/nph.18150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 03/27/2022] [Indexed: 06/14/2023]
Abstract
Among tropical forests, lianas are predicted to have a growth advantage over trees during seasonal drought, with substantial implications for tree and forest dynamics. We tested the hypotheses that lianas maintain higher water status than trees during seasonal drought and that lianas maximize leaf cover to match high, dry-season light conditions, while trees are more limited by moisture availability during the dry season. We monitored the seasonal dynamics of predawn and midday leaf water potentials and leaf phenology for branches of 16 liana and 16 tree species in the canopies of two lowland tropical forests with contrasting rainfall regimes in Panama. In a wet, weakly seasonal forest, lianas maintained higher water balance than trees and maximized their leaf cover during dry-season conditions, when light availability was high, while trees experienced drought stress. In a drier, strongly seasonal forest, lianas and trees displayed similar dry season reductions in leaf cover following strong decreases in soil water availability. Greater soil moisture availability and a higher capacity to maintain water status allow lianas to maintain the turgor potentials that are critical for plant growth in a wet and weakly seasonal forest but not in a dry and strongly seasonal forest.
Collapse
Affiliation(s)
- José A. Medina‐Vega
- Forest Ecology and Forest Management GroupWageningen University and Research CentreWageningen6708 PBthe Netherlands
- Smithsonian Tropical Research InstituteApartado Postal 0843‐03092BalboaAncónPanama
- Forest Global Earth ObservatorySmithsonian Tropical Research InstitutePO Box 37012WashingtonDC20013USA
| | - S. Joseph Wright
- Smithsonian Tropical Research InstituteApartado Postal 0843‐03092BalboaAncónPanama
| | - Frans Bongers
- Forest Ecology and Forest Management GroupWageningen University and Research CentreWageningen6708 PBthe Netherlands
| | - Stefan A. Schnitzer
- Smithsonian Tropical Research InstituteApartado Postal 0843‐03092BalboaAncónPanama
- Department of Biological SciencesMarquette UniversityPO Box 1881MilwaukeeWI53201USA
| | - Frank J. Sterck
- Forest Ecology and Forest Management GroupWageningen University and Research CentreWageningen6708 PBthe Netherlands
| |
Collapse
|
11
|
Water Stress Thresholds and Evaluation of Coefficient Ks for Perennial Ryegrass in Tropical Conditions. WATER 2022. [DOI: 10.3390/w14111696] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Perennial ryegrass (Lolium perenne) is the predominant forage crop in the equatorial highland zones of Colombia due to its high nutritional value and versatility to produce both milk and meat. This study aimed to determine the relationship between the relative depletion of usable soil water and the Ks values of canopy expansion and closure stomatal of perennial ryegrass, as well as to identify the threshold values of water stress. The experiment was carried out in pots under a controlled environment condition. These pots were arranged in a completely randomized manner. The experiment consisted of five treatments—including control treatment—of water deficits in the soil that progressively increased the depletion level as the crop cycle developed. This generated a wide range of conditions in the growth stages. For each treatment, four repetitions were performed Biomass production was significantly affected by water stress. The results show that the upper and lower thresholds of Ks were 0.28 and 1.3 of the depletion level (p) of the total available water (TAW) in the soil for the expansion of the canopy (CE), and 0.25 and 1.1 p of the TAW for stomatal closure (gs). Quadratic functions were fitted for both the CE (R2 = 0.72) and CS (R2 = 0.73); moreover, the Ks function of FAO-AquaCrop with positive shape factor (sf) was as follows: sf = 11, RMSE 0.22 for CE, and sf = 4.3, RMSE 0.19 for gs. Our results indicate that ryegrass is moderately sensitive to water stress. The differences found between the Ks function of FAO and the experimental data call for the need to use modeling with parameters adapted for each case.
Collapse
|
12
|
Drought Effects on Morpho-Physiological and Biochemical Traits in Persian Oak and Black Poplar Seedlings. FORESTS 2022. [DOI: 10.3390/f13030399] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
In many arid and semi-arid regions, increasing water scarcity pushes woody species to their physiological limits, making strong drought resistance essential for adaptive forest management. Here, we examined morpho-physiological and biochemical drought responses of the forestry-relevant Persian oak (Quercus brantii Lindl.) and black poplar (Populus nigra L.). In a 120-day greenhouse pot experiment, seedlings were subjected to three watering regimes (FC100, FC60, and FC30, indicating percentages of field capacity). Under FC100 conditions, all biomass measures and the total and specific leaf area of oak were significantly greater compared to those of poplar. FC60-exposed poplar seedlings exhibited strong declines in relative water content (RWC; −33%) and carotenoids (−46%) and a surge in electrolyte leakage (EL; +51%), while these parameters did not change significantly in oak. Although both species showed 80% EL under FC30 conditions, poplar suffered more severe drought damage than oak as evidenced by a 65% lower survival, stronger reductions in RWC and total chlorophyll, as well as stronger increases in oxidative stress markers. Accordingly, poplar seedlings displayed a drought-related 56% decline in quality index while only statistically insignificant reductions occurred in oak seedlings. The superior drought resistance of oak seedlings implies economically more viable nursery production and better seedling establishment, suggesting a shift towards Persian oak-dominated forestry in its natural range under future climate projections.
Collapse
|
13
|
Macedo VHM, Lage Filho NM, Cunha AMQ, Lopes MN, da Silva RG, Cutrim Junior JAA, Faturi C, Cândido MJD, do Rêgo AC. Agrometeorological and Agronomic Characterization of Megathyrsus Grasses Cultivated in Tropical Humid and Semi-Arid Conditions: A Multivariate Approach. FRONTIERS IN PLANT SCIENCE 2022; 13:809377. [PMID: 35283907 PMCID: PMC8914166 DOI: 10.3389/fpls.2022.809377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Accepted: 02/03/2022] [Indexed: 06/14/2023]
Abstract
Variability in climatic conditions of low-latitude tropical grass cultivation can affect forage production dynamics. Pasture ecosystems are complex and preferably studied from a multifactorial point of view through multivariate approaches. Therefore, in this study, we characterized different growing conditions for grasses of the Megathyrsus genus through studies conducted in tropical humid and semi-arid conditions. We applied principal component, canonical correlation, and discriminant function analyses to the measurements of agronomic and agrometeorological variables in six studies with Guinea and Massai grasses. The principal component analysis, through the climatic characterization by the first principal component, reflects the contrast between water availability and nitrogen variables and energy supply. Agronomic characterization occurred through the distinction between the density of tillers, forage accumulation, and increase in height, versus the accumulation of stems and dead material. The canonical correlation analysis generated a correlation coefficient of 0.84 between the agronomic and agrometeorological variables. There was a contrast between the dead material accumulation and the other agronomic variables, while the agrometeorological variables showed characteristics similar to the first principal component. Discriminant function 1, with 70.36% separation power, distinguished the cultivation conditions based on the study locations. Grass cultivars were differentiated by discriminant function 2, with a 19.20% separation power. From a multivariate variability analysis, despite the similarities of radiation and temperature in the regions studied, the availability of water and nutrients and measurements of agronomic variables can aid in future modeling studies on forage production.
Collapse
Affiliation(s)
- Vitor Hugo Maués Macedo
- Institute of Health and Animal Production, Federal Rural University of Amazon, Belém, Brazil
| | - Nauara Moura Lage Filho
- Nucleus of Agricultural Sciences and Rural Development, Federal University of Pará, Castanhal, Brazil
| | | | - Marcos Neves Lopes
- Federal Institute of Education, Science and Technology of Piauí, Valença, Brazil
| | | | | | - Cristian Faturi
- Institute of Health and Animal Production, Federal Rural University of Amazon, Belém, Brazil
| | | | - Aníbal Coutinho do Rêgo
- Institute of Health and Animal Production, Federal Rural University of Amazon, Belém, Brazil
| |
Collapse
|
14
|
Cocozza C, Penna D. Towards a more active dialogue between hydrologists and ecophysiologists for interdisciplinary studies in forest ecosystems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 807:150877. [PMID: 34627886 DOI: 10.1016/j.scitotenv.2021.150877] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 10/01/2021] [Accepted: 10/04/2021] [Indexed: 06/13/2023]
Abstract
Understanding the internal functioning of natural systems often requires interdisciplinary approaches and competences that allow encompassing and disentangling different and strictly intertwined physical and biological processes. Hydrology and ecophysiology are examples of complementary and highly interconnected disciplines that share water as a common analysis element when investigating the functioning of vegetated ecosystems. In this discussion paper, we call for more frequent and active dialogue and collaboration between (field) hydrologists and ecophysiologists to study natural processes at the boundary between the two disciplines. We report some examples of the specific approaches of hydrologists and ecophysiologists to analyse water movement in the soil-vegetation-atmosphere continuum at increasing spatial scales, highlighting how the same mechanisms can be seen from different, but largely complementary, points of view. We argue that these different perspectives can and should be merged in order to overcome possibly fragmented vision of complex processes and provide a more holistic comprehension of ecohydrological mechanisms in forest ecosystems.
Collapse
Affiliation(s)
- Claudia Cocozza
- Department of Agriculture, Food, Environment and Forestry (DAGRI), University of Florence, Via San Bonaventura 13, 50145 Florence, Italy
| | - Daniele Penna
- Department of Agriculture, Food, Environment and Forestry (DAGRI), University of Florence, Via San Bonaventura 13, 50145 Florence, Italy.
| |
Collapse
|
15
|
The Combination of Increased Temperatures and High Irradiation Causes Changes in Photosynthetic Efficiency. PLANTS 2021; 10:plants10102076. [PMID: 34685884 PMCID: PMC8537194 DOI: 10.3390/plants10102076] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 09/27/2021] [Accepted: 09/27/2021] [Indexed: 11/16/2022]
Abstract
Global warming and the associated climate change are imposing abiotic stress on plants. Abiotic factors are crucial for plant productivity, survival, and reproduction. Eight sunflower hybrids were tested in conditions of different water availability and with combinations of different temperatures and irradiation. The changes in the photosynthetic efficiency were measured in the morning (control conditions: 2013, 25.8 °C and 349.1 W m−2; 2014, 21.8 °C and 296.4 W m−2) and afternoon (the combination of increased temperatures and high irradiation: 2013, 34 °C and 837.9 W m−2; 2014, 29.4 °C and 888.9 W m−2) at a flowering stage in rainfed or irrigated conditions. The measurement time (morning and afternoon conditions) had a statistically significant effect on all the tested parameters. The performance index (PIABS) in 2013 and the maximum quantum yield of photosystem II (TR0/ABS) in 2014 are the only parameters significantly affected by the irrigation. As a result of the combined effect of increased temperatures and high irradiation, PIABS values decreased by 73–92% in rainfed conditions and by 63–87% in irrigated conditions in 2013, depending on the hybrid, while in 2014, the decrease varied between 70 and 86%. The TR0/ABS decrease was 7–17% in 2013, depending on the hybrid, and 6–12% in 2014, both in rainfed and irrigated conditions. The principal component analysis confirmed the effect of the combination of increased temperatures and high irradiation on hybrids, sorting them exclusively according to the time of measurement. All investigated parameters highly fluctuated between hybrids but without observable trends for the morning and afternoon conditions, as well as for irrigation. Plants’ reaction to the combination of increased temperatures and high irradiation manifested as a change in their photosynthetic efficiency, i.e., the photosynthetic apparatus’ functioning was impaired.
Collapse
|
16
|
Osorio Zambrano MA, Castillo DA, Rodríguez Pérez L, Terán W. Cacao ( Theobroma cacao L.) Response to Water Stress: Physiological Characterization and Antioxidant Gene Expression Profiling in Commercial Clones. FRONTIERS IN PLANT SCIENCE 2021; 12:700855. [PMID: 34552605 PMCID: PMC8450537 DOI: 10.3389/fpls.2021.700855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 08/16/2021] [Indexed: 06/13/2023]
Abstract
The increase in events associated with drought constraints plant growth and crop performance. Cacao (Theobroma cacao L.) is sensitive to water deficit stress (DS), which limits productivity. The aim of this research was to characterise the response of seven (CCN51, FEAR5, ICS1, ICS60, ICS95, EET8, and TSH565) commercially important cacao clones to severe and temporal water deficit stress. Ten-month-old cacao trees were submitted to two treatments: well-watered and water-stressed until the leaf water potential (Ψ leaf) reached values between -3.0 and -3.5 MPa. The effects of hydric stress on water relations, gas exchange, photochemical activity, membrane integrity and oxidative stress-related gene expression were evaluated. All clones showed decreases in Ψ leaf, but TSH565 had a higher capacity to maintain water homeostasis in leaves. An initial response phase consisted of stomatal closure, a general mechanism to limit water loss: as a consequence, the photosynthetic rate dropped by approximately 98% on average. In some clones, the photosynthetic rate reached negative values at the maximum stress level, evidencing photorespiration and was confirmed by increased intracellular CO2. A second and photosynthetically limited phase was characterized by a drop in PSII quantum efficiency, which affected all clones. On average, all clones were able to recover after 4 days of rewatering. Water deficit triggered oxidative stress at the early phase, as evidenced by the upregulation of oxidative stress markers and genes encoding ROS scavenging enzymes. The effects of water deficit stress on energy metabolism were deduced given the upregulation of fermentative enzyme-coding genes. Altogether, our results suggest that the EET8 clone was the highest performing under water deficit while the ICS-60 clone was more susceptible to water stress. Importantly, the activation of the antioxidant system and PSII repair mechanism seem to play key roles in the observed differences in tolerance to water deficit stress among clones.
Collapse
Affiliation(s)
| | | | | | - Wilson Terán
- Plant and Crop Biology, Department of Biology, Pontificia Universidad Javeriana, Bogotá, Colombia
| |
Collapse
|
17
|
Stanschewski CS, Rey E, Fiene G, Craine EB, Wellman G, Melino VJ, S. R. Patiranage D, Johansen K, Schmöckel SM, Bertero D, Oakey H, Colque-Little C, Afzal I, Raubach S, Miller N, Streich J, Amby DB, Emrani N, Warmington M, Mousa MAA, Wu D, Jacobson D, Andreasen C, Jung C, Murphy K, Bazile D, Tester M. Quinoa Phenotyping Methodologies: An International Consensus. PLANTS (BASEL, SWITZERLAND) 2021; 10:1759. [PMID: 34579292 PMCID: PMC8472428 DOI: 10.3390/plants10091759] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 08/09/2021] [Accepted: 08/12/2021] [Indexed: 11/30/2022]
Abstract
Quinoa is a crop originating in the Andes but grown more widely and with the genetic potential for significant further expansion. Due to the phenotypic plasticity of quinoa, varieties need to be assessed across years and multiple locations. To improve comparability among field trials across the globe and to facilitate collaborations, components of the trials need to be kept consistent, including the type and methods of data collected. Here, an internationally open-access framework for phenotyping a wide range of quinoa features is proposed to facilitate the systematic agronomic, physiological and genetic characterization of quinoa for crop adaptation and improvement. Mature plant phenotyping is a central aspect of this paper, including detailed descriptions and the provision of phenotyping cards to facilitate consistency in data collection. High-throughput methods for multi-temporal phenotyping based on remote sensing technologies are described. Tools for higher-throughput post-harvest phenotyping of seeds are presented. A guideline for approaching quinoa field trials including the collection of environmental data and designing layouts with statistical robustness is suggested. To move towards developing resources for quinoa in line with major cereal crops, a database was created. The Quinoa Germinate Platform will serve as a central repository of data for quinoa researchers globally.
Collapse
Affiliation(s)
- Clara S. Stanschewski
- Center for Desert Agriculture, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia; (C.S.S.); (E.R.); (G.F.); (G.W.); (V.J.M.); (D.S.R.P.)
| | - Elodie Rey
- Center for Desert Agriculture, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia; (C.S.S.); (E.R.); (G.F.); (G.W.); (V.J.M.); (D.S.R.P.)
| | - Gabriele Fiene
- Center for Desert Agriculture, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia; (C.S.S.); (E.R.); (G.F.); (G.W.); (V.J.M.); (D.S.R.P.)
| | - Evan B. Craine
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA 99164, USA; (E.B.C.); (K.M.)
| | - Gordon Wellman
- Center for Desert Agriculture, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia; (C.S.S.); (E.R.); (G.F.); (G.W.); (V.J.M.); (D.S.R.P.)
| | - Vanessa J. Melino
- Center for Desert Agriculture, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia; (C.S.S.); (E.R.); (G.F.); (G.W.); (V.J.M.); (D.S.R.P.)
| | - Dilan S. R. Patiranage
- Center for Desert Agriculture, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia; (C.S.S.); (E.R.); (G.F.); (G.W.); (V.J.M.); (D.S.R.P.)
- Plant Breeding Institute, Christian-Albrechts-University of Kiel, 24118 Kiel, Germany; (N.E.); (C.J.)
| | - Kasper Johansen
- Water Desalination and Reuse Center, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia;
| | - Sandra M. Schmöckel
- Department Physiology of Yield Stability, Institute of Crop Science, University of Hohenheim, 70599 Stuttgart, Germany;
| | - Daniel Bertero
- Department of Plant Production, School of Agriculture, University of Buenos Aires, Buenos Aires C1417DSE, Argentina;
| | - Helena Oakey
- Robinson Research Institute, Adelaide Medical School, University of Adelaide, Adelaide, SA 5005, Australia;
| | - Carla Colque-Little
- Department of Plant and Environmental Sciences, University of Copenhagen, DK-2630 Taastrup, Denmark; (C.C.-L.); (D.B.A.); (C.A.)
| | - Irfan Afzal
- Department of Agronomy, University of Agriculture, Faisalabad 38000, Pakistan;
| | - Sebastian Raubach
- Department of Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee AB15 8QH, UK;
| | - Nathan Miller
- Department of Botany, University of Wisconsin, 430 Lincoln Dr, Madison, WI 53706, USA;
| | - Jared Streich
- Biosciences, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; (J.S.); (D.J.)
| | - Daniel Buchvaldt Amby
- Department of Plant and Environmental Sciences, University of Copenhagen, DK-2630 Taastrup, Denmark; (C.C.-L.); (D.B.A.); (C.A.)
| | - Nazgol Emrani
- Plant Breeding Institute, Christian-Albrechts-University of Kiel, 24118 Kiel, Germany; (N.E.); (C.J.)
| | - Mark Warmington
- Department of Primary Industries and Regional Development, Agriculture and Food, Kununurra, WA 6743, Australia;
| | - Magdi A. A. Mousa
- Department of Arid Land Agriculture, Faculty of Meteorology, Environment and Arid Land Agriculture, King Abdulaziz University, Jeddah 21589, Saudi Arabia;
- Department of Vegetables, Faculty of Agriculture, Assiut University, Assiut 71526, Egypt
| | - David Wu
- Shanxi Jiaqi Agri-Tech Co., Ltd., Taiyuan 030006, China;
| | - Daniel Jacobson
- Biosciences, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; (J.S.); (D.J.)
| | - Christian Andreasen
- Department of Plant and Environmental Sciences, University of Copenhagen, DK-2630 Taastrup, Denmark; (C.C.-L.); (D.B.A.); (C.A.)
| | - Christian Jung
- Plant Breeding Institute, Christian-Albrechts-University of Kiel, 24118 Kiel, Germany; (N.E.); (C.J.)
| | - Kevin Murphy
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA 99164, USA; (E.B.C.); (K.M.)
| | - Didier Bazile
- CIRAD, UMR SENS, 34398 Montpellier, France;
- SENS, CIRAD, IRD, University Paul Valery Montpellier 3, 34090 Montpellier, France
| | - Mark Tester
- Center for Desert Agriculture, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia; (C.S.S.); (E.R.); (G.F.); (G.W.); (V.J.M.); (D.S.R.P.)
| | | |
Collapse
|
18
|
Prakash PT, Banan D, Paul RE, Feldman MJ, Xie D, Freyfogle L, Baxter I, Leakey ADB. Correlation and co-localization of QTL for stomatal density, canopy temperature, and productivity with and without drought stress in Setaria. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:5024-5037. [PMID: 33893796 PMCID: PMC8219040 DOI: 10.1093/jxb/erab166] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Accepted: 04/23/2021] [Indexed: 05/04/2023]
Abstract
Mechanistic modeling indicates that stomatal conductance could be reduced to improve water use efficiency (WUE) in C4 crops. Genetic variation in stomatal density and canopy temperature was evaluated in the model C4 genus, Setaria. Recombinant inbred lines (RILs) derived from a Setaria italica×Setaria viridis cross were grown with ample or limiting water supply under field conditions in Illinois. An optical profilometer was used to rapidly assess stomatal patterning, and canopy temperature was measured using infrared imaging. Stomatal density and canopy temperature were positively correlated but both were negatively correlated with total above-ground biomass. These trait relationships suggest a likely interaction between stomatal density and the other drivers of water use such as stomatal size and aperture. Multiple quantitative trait loci (QTL) were identified for stomatal density and canopy temperature, including co-located QTL on chromosomes 5 and 9. The direction of the additive effect of these QTL on chromosome 5 and 9 was in accordance with the positive phenotypic relationship between these two traits. This, along with prior experiments, suggests a common genetic architecture between stomatal patterning and WUE in controlled environments with canopy transpiration and productivity in the field, while highlighting the potential of Setaria as a model to understand the physiology and genetics of WUE in C4 species.
Collapse
Affiliation(s)
- Parthiban Thathapalli Prakash
- Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- International Rice Research Institute, Los Baños, Philippines
| | - Darshi Banan
- Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Rachel E Paul
- Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | | | - Dan Xie
- Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, IN, USA
| | - Luke Freyfogle
- Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Ivan Baxter
- Donald Danforth Plant Science Center, St Louis, MO, USA
| | - Andrew D B Leakey
- Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| |
Collapse
|
19
|
Bioherbicides: An Eco-Friendly Tool for Sustainable Weed Management. PLANTS 2021; 10:plants10061212. [PMID: 34203650 PMCID: PMC8232089 DOI: 10.3390/plants10061212] [Citation(s) in RCA: 43] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Revised: 05/01/2021] [Accepted: 05/06/2021] [Indexed: 01/08/2023]
Abstract
Weed management is an arduous undertaking in crop production. Integrated weed management, inclusive of the application of bioherbicides, is an emerging weed control strategy toward sustainable agriculture. In general, bioherbicides are derived either from plants containing phytotoxic allelochemicals or certain disease-carrying microbes that can suppress weed populations. While bioherbicides have exhibited great promise in deterring weed seed germination and growth, only a few in vitro studies have been conducted on the physiological responses they evoke in weeds. This review discusses bioherbicide products that are currently available on the market, bioherbicide impact on weed physiology, and potential factors influencing bioherbicide efficacy. A new promising bioherbicide product is introduced at the end of this paper. When absorbed, phytotoxic plant extracts or metabolites disrupt cell membrane integrity and important biochemical processes in weeds. The phytotoxic impact on weed growth is reflected in low levels of root cell division, nutrient absorption, and growth hormone and pigment synthesis, as well as in the development of reactive oxygen species (ROS), stress-related hormones, and abnormal antioxidant activity. The inconsistency of bioherbicide efficacy is a primary factor restricting their widespread use, which is influenced by factors such as bioactive compound content, weed control spectrum, formulation, and application method.
Collapse
|
20
|
Dobránszki J. Application of naturally occurring mechanical forces in in vitro plant tissue culture and biotechnology. PLANT SIGNALING & BEHAVIOR 2021; 16:1902656. [PMID: 33902398 PMCID: PMC8143234 DOI: 10.1080/15592324.2021.1902656] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 03/08/2021] [Accepted: 03/09/2021] [Indexed: 06/12/2023]
Abstract
Cues and signals of the environment in nature can be either beneficial or detrimental from the growth and developmental perspectives. Plants, despite their limited spatial mobility, have developed advanced strategies to overcome the various and changing environmental impacts including stresses. In vitro plantlets, tissues and cells are constantly exposed to the influence of their environment that is well controlled. Light has a widely known morphogenetic effect on plants; however, other physical cues and signals are at least as important but were often neglected. In this review, I summarize our knowledge about the role of the mechanical stimuli, like sound, ultrasound, touch, or wounding in in vitro plant cultures. I summarize the molecular, biochemical, physiological, growth, and developmental changes they cause and how these processes are controlled; moreover, how their regulating or stimulating roles are applied in various plant biotechnological applications. Recent studies revealed that mechanical forces can be used for affecting the plant development and growth in plant tissue culture efficiently, and for increasing the efficacy of other plant biotechnological methods, like genetic transformation and secondary metabolite production.
Collapse
Affiliation(s)
- Judit Dobránszki
- Centre for Agricultural Genomics and Biotechnology, FAFSEM, University of Debrecen, Nyíregyháza, Hungary
| |
Collapse
|
21
|
Scudeletti D, Crusciol CAC, Bossolani JW, Moretti LG, Momesso L, Servaz Tubaña B, de Castro SGQ, De Oliveira EF, Hungria M. Trichoderma asperellum Inoculation as a Tool for Attenuating Drought Stress in Sugarcane. FRONTIERS IN PLANT SCIENCE 2021; 12:645542. [PMID: 33936132 PMCID: PMC8082249 DOI: 10.3389/fpls.2021.645542] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Accepted: 03/15/2021] [Indexed: 05/27/2023]
Abstract
Drought stress is an important concern worldwide which reduces crop yield and quality. To alleviate this problem, Trichoderma asperellum has been used as a plant growth-promoting fungus capable of inducing plant tolerance to biotic and abiotic stresses. Here, we examined the effect of T. asperellum inoculation on sugarcane plant above and belowground development under drought stress and investigated the role of this fungus on inducing tolerance to drought at physiological and biochemical levels. The experiment was performed in pots under greenhouse conditions, with four treatments and four replicates. The treatments consisted of sugarcane plants inoculated or not with T. asperellum and grown under drought stress and adequate water availability. Drought-stressed sugarcane plants inoculated with T. asperellum changed the crop nutrition and chlorophyll and carotenoid concentrations, resulting in increased photosynthesis rate, stomatal conductance, and water use efficiency compared to the non-inoculated plants. In addition, the antioxidant metabolism also changed, increasing the superoxide dismutase and peroxidase enzyme activities, as well as the proline concentration and sugar portioning. These cascade effects enhanced the root and stalk development, demonstrating that T. asperellum inoculation is an important tool in alleviating the negative effects of drought stress in sugarcane. Future studies should be performed to elucidate if T. asperellum should be reapplied to the sugarcane ratoons.
Collapse
Affiliation(s)
- Daniele Scudeletti
- Department of Crop Science, College of Agricultural Sciences, São Paulo State University, Botucatu, Brazil
| | | | - João William Bossolani
- Department of Crop Science, College of Agricultural Sciences, São Paulo State University, Botucatu, Brazil
| | - Luiz Gustavo Moretti
- Department of Crop Science, College of Agricultural Sciences, São Paulo State University, Botucatu, Brazil
| | - Letusa Momesso
- Department of Crop Science, College of Agricultural Sciences, São Paulo State University, Botucatu, Brazil
| | - Brenda Servaz Tubaña
- School of Plant, Environmental, and Soil Sciences, LSU AgCenter, Baton Rouge, LA, United States
| | | | - Elisa Fidêncio De Oliveira
- Department of Crop Science, College of Agricultural Sciences, São Paulo State University, Botucatu, Brazil
| | | |
Collapse
|
22
|
Citron Watermelon Potential to Improve Crop Diversification and Reduce Negative Impacts of Climate Change. SUSTAINABILITY 2021. [DOI: 10.3390/su13042269] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Citron watermelon (Citrullus lanatus var. citroides (L.H. Bailey) Mansf. ex Greb.) is an underexploited and under-researched crop species with the potential to contribute to crop diversification in Sub-Saharan Africa. The species is cultivated in the drier parts of Southern Africa, mainly by smallholder farmers who maintain a wide range of landrace varieties. Understanding the molecular and morpho-physiological basis for drought adaptation in citron watermelon under these dry environments can aid in the identification of suitable traits for drought-tolerance breeding and improve food system resilience among smallholder farmers, thus adding to crop diversification. This paper reviews the literature on drought adaptation of Citrullus lanatus spp. (C3 xerophytes), using the systematic review approach. The review discusses the potential role of citron watermelon in adding to crop diversification, alternative food uses, and potential by-products that can be processed from the crop, and it analyzes the role of Sub-Saharan African farmers play as key actors in conserving citron watermelon germplasm and biodiversity. Finally, the review provides a summary of significant findings and identifies critical knowledge gaps for further research.
Collapse
|
23
|
Koester RP, Pignon CP, Kesler DC, Willison RS, Kang M, Shen Y, Priest HD, Begemann MB, Cook KA, Bannon GA, Oufattole M. Transgenic insertion of the cyanobacterial membrane protein ictB increases grain yield in Zea mays through increased photosynthesis and carbohydrate production. PLoS One 2021; 16:e0246359. [PMID: 33539477 PMCID: PMC7861388 DOI: 10.1371/journal.pone.0246359] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Accepted: 01/18/2021] [Indexed: 11/19/2022] Open
Abstract
The C4 crop maize (Zea mays) is the most widely grown cereal crop worldwide and is an essential feedstock for food and bioenergy. Improving maize yield is important to achieve food security and agricultural sustainability in the 21st century. One potential means to improve crop productivity is to enhance photosynthesis. ictB, a membrane protein that is highly conserved across cyanobacteria, has been shown to improve photosynthesis, and often biomass, when introduced into diverse C3 plant species. Here, ictB from Synechococcus sp. strain PCC 7942 was inserted into maize using Agrobacterium-mediated transformation. In three controlled-environment experiments, ictB insertion increased leaf starch and sucrose content by up to 25% relative to controls. Experimental field trials in four growing seasons, spanning the Midwestern United States (Summers 2018 & 2019) and Argentina (Winter 2018 & 2019), showed an average of 3.49% grain yield improvement, by as much as 5.4% in a given season and up to 9.4% at certain trial locations. A subset of field trial locations was used to test for modification of ear traits and ФPSII, a proxy for photosynthesis. Results suggested that yield gain in transgenics could be associated with increased ФPSII, and the production of longer, thinner ears with more kernels. ictB localized primarily to the microsome fraction of leaf bundle-sheath cells, but not to chloroplasts. Extramembrane domains of ictB interacted in vitro with proteins involved in photosynthesis and carbohydrate metabolism. To our knowledge, this is the first published evidence of ictB insertion into a species using C4 photosynthesis and the largest-scale demonstration of grain yield enhancement from ictB insertion in planta. Results show that ictB is a valuable yield gene in the economically important crop maize, and are an important proof of concept that transgenic manipulation of photosynthesis can be used to create economically viable crop improvement traits.
Collapse
Affiliation(s)
| | | | - Dylan C Kesler
- Benson Hill, St. Louis, Missouri, United States of America
| | | | - Miyoung Kang
- Benson Hill, St. Louis, Missouri, United States of America
| | - Yu Shen
- Benson Hill, St. Louis, Missouri, United States of America
| | - Henry D Priest
- Benson Hill, St. Louis, Missouri, United States of America
| | | | - Kevin A Cook
- Benson Hill, St. Louis, Missouri, United States of America
| | - Gary A Bannon
- Benson Hill, St. Louis, Missouri, United States of America
| | | |
Collapse
|
24
|
Adigun OA, Nadeem M, Pham TH, Jewell LE, Cheema M, Thomas R. Recent advances in bio-chemical, molecular and physiological aspects of membrane lipid derivatives in plant pathology. PLANT, CELL & ENVIRONMENT 2021; 44:1-16. [PMID: 33034375 DOI: 10.1111/pce.13904] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 09/22/2020] [Accepted: 09/30/2020] [Indexed: 06/11/2023]
Abstract
Plant pathogens pose a significant threat to the food industry and food security accounting for 10-40% crop losses annually on a global scale. Economic losses from plant diseases are estimated at $300B for major food crops and are associated with reduced food availability and accessibility and also high food costs. Although strategies exist to reduce the impact of diseases in plants, many of these introduce harmful chemicals to our food chain. Therefore, it is important to understand and utilize plants' immune systems to control plant pathogens to enable more sustainable agriculture. Lipids are core components of cell membranes and as such are part of the first line of defense against pathogen attack. Recent developments in omics technologies have advanced our understanding of how plant membrane lipid biosynthesis, remodelling and/or signalling modulate plant responses to infection. Currently, there is limited information available in the scientific literature concerning lipid signalling targets and their biochemical and physiological consequences in response to plant pathogens. This review focusses on the functions of membrane lipid derivatives and their involvement in plant responses to pathogens as biotic stressors. We describe major plant defense systems including systemic-acquired resistance, basal resistance, hypersensitivity and the gene-for-gene concept in this context.
Collapse
Affiliation(s)
- Oludoyin Adeseun Adigun
- School of Science and the Environment/Boreal Ecosystem Research Facility, Memorial University of Newfoundland, Corner Brook, Newfoundland and Labrador, A2H5G4, Canada
| | - Muhammad Nadeem
- School of Science and the Environment/Boreal Ecosystem Research Facility, Memorial University of Newfoundland, Corner Brook, Newfoundland and Labrador, A2H5G4, Canada
| | - Thu Huong Pham
- School of Science and the Environment/Boreal Ecosystem Research Facility, Memorial University of Newfoundland, Corner Brook, Newfoundland and Labrador, A2H5G4, Canada
| | - Linda Elizabeth Jewell
- St. John's Research and Development Centre, Agriculture and Agri-Food Canada, 204 Brookfield Rd, St. John's, Newfoundland and Labrador, A1E 6J5, Canada
| | - Mumtaz Cheema
- School of Science and the Environment/Boreal Ecosystem Research Facility, Memorial University of Newfoundland, Corner Brook, Newfoundland and Labrador, A2H5G4, Canada
| | - Raymond Thomas
- School of Science and the Environment/Boreal Ecosystem Research Facility, Memorial University of Newfoundland, Corner Brook, Newfoundland and Labrador, A2H5G4, Canada
| |
Collapse
|
25
|
Definition of Core Bacterial Taxa in Different Root Compartments of Dactylis glomerata, Grown in Soil under Different Levels of Land Use Intensity. DIVERSITY 2020. [DOI: 10.3390/d12100392] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Plant-associated bacterial assemblages are critical for plant fitness. Thus, identifying a consistent plant-associated core microbiome is important for predicting community responses to environmental changes. Our target was to identify the core bacterial microbiome of orchard grass Dactylis glomerata L. and to assess the part that is most sensitive to land management. Dactylis glomerata L. samples were collected from grassland sites with contrasting land use intensities but comparable soil properties at three different timepoints. To assess the plant-associated bacterial community structure in the compartments rhizosphere, bulk soil and endosphere, a molecular barcoding approach based on high throughput 16S rRNA amplicon sequencing was used. A distinct composition of plant-associated core bacterial communities independent of land use intensity was identified. Pseudomonas, Rhizobium and Bradyrhizobium were ubiquitously found in the root bacterial core microbiome. In the rhizosphere, the majority of assigned genera were Rhodoplanes, Methylibium, Kaistobacter and Bradyrhizobium. Due to the frequent occurrence of plant-promoting abilities in the genera found in the plant-associated core bacterial communities, our study helps to identify “healthy” plant-associated bacterial core communities. The variable part of the plant-associated microbiome, represented by the fluctuation of taxa at the different sampling timepoints, was increased under low land use intensity. This higher compositional variation in samples from plots with low land use intensity indicates a more selective recruitment of bacteria with traits required at different timepoints of plant development compared to samples from plots with high land use intensity.
Collapse
|
26
|
Prescott CE, Grayston SJ, Helmisaari HS, Kaštovská E, Körner C, Lambers H, Meier IC, Millard P, Ostonen I. Surplus Carbon Drives Allocation and Plant-Soil Interactions. Trends Ecol Evol 2020; 35:1110-1118. [PMID: 32928565 DOI: 10.1016/j.tree.2020.08.007] [Citation(s) in RCA: 86] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 08/11/2020] [Accepted: 08/18/2020] [Indexed: 11/18/2022]
Abstract
Plant growth is usually constrained by the availability of nutrients, water, or temperature, rather than photosynthetic carbon (C) fixation. Under these conditions leaf growth is curtailed more than C fixation, and the surplus photosynthates are exported from the leaf. In plants limited by nitrogen (N) or phosphorus (P), photosynthates are converted into sugars and secondary metabolites. Some surplus C is translocated to roots and released as root exudates or transferred to root-associated microorganisms. Surplus C is also produced under low moisture availability, low temperature, and high atmospheric CO2 concentrations, with similar below-ground effects. Many interactions among above- and below-ground ecosystem components can be parsimoniously explained by the production, distribution, and release of surplus C under conditions that limit plant growth.
Collapse
Affiliation(s)
- Cindy E Prescott
- Department of Forest and Conservation Sciences, University of British Columbia, 2424 Main Mall, Vancouver, BC, Canada V6T1Z4.
| | - Sue J Grayston
- Department of Forest and Conservation Sciences, University of British Columbia, 2424 Main Mall, Vancouver, BC, Canada V6T1Z4
| | - Heljä-Sisko Helmisaari
- Department of Forest Sciences, University of Helsinki, P.O. Box 27, FI-00014 Helsinki, Finland
| | - Eva Kaštovská
- Department of Ecosystem Biology, University of South Bohemia, Branisovska 1760, Ceske Budejovice 37005, Czech Republic
| | - Christian Körner
- Institute of Botany, University of Basel, Schönbeinstr. 6, CH-4056 Basel, Switzerland
| | - Hans Lambers
- School of Biological Sciences, The University of Western Australia, Crawley (Perth), WA 6009, Australia
| | - Ina C Meier
- Plant Ecology, Albrecht-von-Haller Institute for Plant Sciences, University of Goettingen, 37073 Göttingen, Germany
| | - Peter Millard
- Manaaki Whenua - Landcare Research, Lincoln 7640, New Zealand
| | - Ivika Ostonen
- Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, 51014, Tartu, Estonia
| |
Collapse
|
27
|
Maize Open-Pollinated Populations Physiological Improvement: Validating Tools for Drought Response Participatory Selection. SUSTAINABILITY 2019. [DOI: 10.3390/su11216081] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Participatory selection—exploiting specific adaptation traits to target environments—helps to guarantees yield stability in a changing climate, in particular under low-input or organic production. The purpose of the present study was to identify reliable, low-cost, fast and easy-to-use tools to complement traditional selection for an effective participatory improvement of maize populations for drought resistance/tolerance. The morphological and eco-physiological responses to progressive water deprivation of four maize open-pollinated populations were assessed in both controlled and field conditions. Thermography and Chl a fluorescence, validated by gas exchange indicated that the best performing populations under water-deficit conditions were ‘Fandango’ and to a less extent ‘Pigarro’ (both from participatory breeding). These populations showed high yield potential under optimal and reduced watering. Under moderate water stress, ‘Bilhó’, originating from an altitude of 800 m, is one of the most resilient populations. The experiments under chamber conditions confirmed the existence of genetic variability within ‘Pigarro’ and ‘Fandango’ for drought response relevant for future populations breeding. Based on the easiness to score and population discriminatory power, the performance index (PIABS) emerges as an integrative phenotyping tool to use as a refinement of the common participatory maize selection especially under moderate water deprivation.
Collapse
|
28
|
Marín‐de la Rosa N, Lin C, Kang YJ, Dhondt S, Gonzalez N, Inzé D, Falter‐Braun P. Drought resistance is mediated by divergent strategies in closely related Brassicaceae. THE NEW PHYTOLOGIST 2019; 223:783-797. [PMID: 30955214 PMCID: PMC6771540 DOI: 10.1111/nph.15841] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2018] [Accepted: 03/29/2019] [Indexed: 05/08/2023]
Abstract
Droughts cause severe crop losses worldwide and climate change is projected to increase their prevalence in the future. Similar to the situation for many crops, the reference plant Arabidopsis thaliana (Ath) is considered drought-sensitive, whereas, as we demonstrate, its close relatives Arabidopsis lyrata (Aly) and Eutrema salsugineum (Esa) are drought-resistant. To understand the molecular basis for this plasticity we conducted a deep phenotypic, biochemical and transcriptomic comparison using developmentally matched plants. We demonstrate that Aly responds most sensitively to decreasing water availability with early growth reduction, metabolic adaptations and signaling network rewiring. By contrast, Esa is in a constantly prepared mode as evidenced by high basal proline levels, ABA signaling transcripts and late growth responses. The stress-sensitive Ath responds later than Aly and earlier than Esa, although its responses tend to be more extreme. All species detect water scarcity with similar sensitivity; response differences are encoded in downstream signaling and response networks. Moreover, several signaling genes expressed at higher basal levels in both Aly and Esa have been shown to increase water-use efficiency and drought resistance when overexpressed in Ath. Our data demonstrate contrasting strategies of closely related Brassicaceae to achieve drought resistance.
Collapse
Affiliation(s)
- Nora Marín‐de la Rosa
- Institute of Network Biology (INET)Helmholtz Zentrum München (HMGU)München‐Neuherberg85764Germany
| | - Chung‐Wen Lin
- Institute of Network Biology (INET)Helmholtz Zentrum München (HMGU)München‐Neuherberg85764Germany
| | - Yang Jae Kang
- Institute of Network Biology (INET)Helmholtz Zentrum München (HMGU)München‐Neuherberg85764Germany
- Division of Life ScienceGyeongsang National UniversityJinju52828Korea
| | - Stijn Dhondt
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhent9052Belgium
- VIB‐UGent Center for Plant Systems BiologyVIBGhent9052Belgium
| | - Nathalie Gonzalez
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhent9052Belgium
- VIB‐UGent Center for Plant Systems BiologyVIBGhent9052Belgium
- UMR 1332Biologie du Fruit et PathologieINRAUniv. BordeauxVillenave d'Ornon Cedex33882France
| | - Dirk Inzé
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhent9052Belgium
- VIB‐UGent Center for Plant Systems BiologyVIBGhent9052Belgium
| | - Pascal Falter‐Braun
- Institute of Network Biology (INET)Helmholtz Zentrum München (HMGU)München‐Neuherberg85764Germany
- Microbe–Host InteractionsLudwig‐Maximilians‐Universität (LMU) MünchenMunich80539Germany
| |
Collapse
|
29
|
de Freitas GM, Thomas J, Liyanage R, Lay JO, Basu S, Ramegowda V, do Amaral MN, Benitez LC, Bolacel Braga EJ, Pereira A. Cold tolerance response mechanisms revealed through comparative analysis of gene and protein expression in multiple rice genotypes. PLoS One 2019; 14:e0218019. [PMID: 31181089 PMCID: PMC6557504 DOI: 10.1371/journal.pone.0218019] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2018] [Accepted: 05/24/2019] [Indexed: 11/25/2022] Open
Abstract
Due to its tropical origin and adaptation, rice is significantly impacted by cold stress, and consequently sustains large losses in growth and productivity. Currently, rice is the second most consumed cereal in the world and production losses caused by extreme temperature events in the context of "major climatic changes" can have major impacts on the world economy. We report here an analysis of rice genotypes in response to low-temperature stress, studied through physiological gas-exchange parameters, biochemical changes in photosynthetic pigments and antioxidants, and at the level of gene and protein expression, towards an understanding and identification of multiple low-temperature tolerance mechanisms. The first effects of cold stress were observed on photosynthesis among all genotypes. However, the tropical japonica genotypes Secano do Brazil and Cypress had a greater reduction in gas exchange parameters like photosynthesis and water use efficiency in comparison to the temperate japonica Nipponbare and M202 genotypes. The analysis of biochemical profiles showed that despite the impacts of low temperature on tolerant plants, they quickly adjusted to maintain their cellular homeostasis by an accumulation of antioxidants and osmolytes like phenolic compounds and proline. The cold tolerant and sensitive genotypes showed a clear difference in gene expression at the transcript level for OsGH3-2, OsSRO1a, OsZFP245, and OsTPP1, as well as for expression at the protein level for LRR-RLKs, bHLH, GLYI, and LTP1 proteins. This study exemplifies the cold tolerant features of the temperate japonica Nipponbare and M202 genotypes, as observed through the analysis of physiological and biochemical responses and the associated changes in gene and protein expression patterns. The genes and proteins showing differential expression response are notable candidates towards understanding the biological pathways affected in rice and for engineering cold tolerance, to generate cultivars capable of maintaining growth, development, and reproduction under cold stress. We also propose that the mechanisms of action of the genes analyzed are associated with the tolerance response.
Collapse
Affiliation(s)
- Gabriela Moraes de Freitas
- Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas, United States of America
- Department of Botany, Federal University of Pelotas, Pelotas, Brazil
| | - Julie Thomas
- Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas, United States of America
| | - Rohana Liyanage
- Department of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas, United States of America
| | - Jackson O. Lay
- Department of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas, United States of America
| | - Supratim Basu
- Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas, United States of America
| | - Venkategowda Ramegowda
- Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas, United States of America
| | | | | | | | - Andy Pereira
- Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas, United States of America
| |
Collapse
|
30
|
Blancon J, Dutartre D, Tixier MH, Weiss M, Comar A, Praud S, Baret F. A High-Throughput Model-Assisted Method for Phenotyping Maize Green Leaf Area Index Dynamics Using Unmanned Aerial Vehicle Imagery. FRONTIERS IN PLANT SCIENCE 2019; 10:685. [PMID: 31231403 PMCID: PMC6568052 DOI: 10.3389/fpls.2019.00685] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2019] [Accepted: 05/07/2019] [Indexed: 05/19/2023]
Abstract
The dynamics of the Green Leaf Area Index (GLAI) is of great interest for numerous applications such as yield prediction and plant breeding. We present a high-throughput model-assisted method for characterizing GLAI dynamics in maize (Zea mays subsp. mays) using multispectral imagery acquired from an Unmanned Aerial Vehicle (UAV). Two trials were conducted with a high diversity panel of 400 lines under well-watered and water-deficient treatments in 2016 and 2017. For each UAV flight, we first derived GLAI estimates from empirical relationships between the multispectral reflectance and ground level measurements of GLAI achieved over a small sample of microplots. We then fitted a simple but physiologically sound GLAI dynamics model over the GLAI values estimated previously. Results show that GLAI dynamics was estimated accurately throughout the cycle (R2 > 0.9). Two parameters of the model, biggest leaf area and leaf longevity, were also estimated successfully. We showed that GLAI dynamics and the parameters of the fitted model are highly heritable (0.65 ≤ H2 ≤ 0.98), responsive to environmental conditions, and linked to yield and drought tolerance. This method, combining growth modeling, UAV imagery and simple non-destructive field measurements, provides new high-throughput tools for understanding the adaptation of GLAI dynamics and its interaction with the environment. GLAI dynamics is also a promising trait for crop breeding, and paves the way for future genetic studies.
Collapse
Affiliation(s)
- Justin Blancon
- Biogemma, Centre de Recherche de Chappes, Chappes, France
| | | | | | - Marie Weiss
- INRA UMR 114 EMMAH, UMT CAPTE, Domaine Saint-Paul, Avignon, France
| | | | | | - Frédéric Baret
- INRA UMR 114 EMMAH, UMT CAPTE, Domaine Saint-Paul, Avignon, France
| |
Collapse
|
31
|
Sanad MNME, Smertenko A, Garland-Campbell KA. Differential Dynamic Changes of Reduced Trait Model for Analyzing the Plastic Response to Drought Phases: A Case Study in Spring Wheat. FRONTIERS IN PLANT SCIENCE 2019; 10:504. [PMID: 31080454 PMCID: PMC6497792 DOI: 10.3389/fpls.2019.00504] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2018] [Accepted: 04/01/2019] [Indexed: 05/21/2023]
Abstract
Current limited water availability due to climate changes results in severe drought stress and desiccation in plants. Phenotyping drought tolerance remains challenging. In particular, our knowledge about the discriminating power of traits for capturing a plastic phenotype in high-throughput settings is scant. The study is designed to investigate the differential performance and broad-sense heritability of a battery set of morphological, physiological, and cellular traits to understand the adaptive phenotypic response to drought in spring wheat during the tillering stage. The potential of peroxisome abundance to predict the adaptive response under severe drought was assessed using a high-throughput technique for peroxisome quantification in plants. The research dissected the dynamic changes of some phenological traits during three successive phases of drought using two contrasting genotypes of adaptability to drought. The research demonstrates 5 main findings: (1) a reduction of the overall dimension of the phenological traits for robust phenotyping of the adaptive performance under drought; (2) the abundance of peroxisomes in response to drought correlate negatively with grain yield; (3) the efficiency of ROS homeostasis through peroxisome proliferation which seems to be genetically programmed; and (4) the dynamics of ROS homeostasis seems to be timing dependent mechanism, the tolerant genotype response is earlier than the susceptible genotype. This work will contribute to the identification of robust plastic phenotypic tools and the understanding of the mechanisms for adaptive behavior under drought conditions. SUMMARY STATEMENT This study presents the estimated broad-sense heritability of 24 phenological traits under drought compared with non-stressed conditions. The results demonstrated a reduced model of the overall dimension of the phenological traits for phenotyping drought tolerant response including a novel trait (peroxisome abundance). Also, it displays that the adaptive mechanism through peroxisomes proliferation that is a genetic-dependent manner and related to the stress phase, since tolerant plants can sense the stress and maintain the cellular balance earlier than the sensitive plants.
Collapse
Affiliation(s)
- Marwa N. M. E. Sanad
- Department of Genetics and Cytology, National Research Centre, Giza, Egypt
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, United States
- Institute of Biological Chemistry, Washington State University, Pullman, WA, United States
| | - Andrei Smertenko
- Institute of Biological Chemistry, Washington State University, Pullman, WA, United States
| | - Kimberley A. Garland-Campbell
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, United States
- USDA-ARS Wheat Health, Genetics, and Quality Research Unit, Washington State University, Pullman, WA, United States
| |
Collapse
|
32
|
Yates S, Jaškūnė K, Liebisch F, Nagelmüller S, Kirchgessner N, Kölliker R, Walter A, Brazauskas G, Studer B. Phenotyping a Dynamic Trait: Leaf Growth of Perennial Ryegrass Under Water Limiting Conditions. FRONTIERS IN PLANT SCIENCE 2019; 10:344. [PMID: 30967891 PMCID: PMC6440318 DOI: 10.3389/fpls.2019.00344] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Accepted: 03/05/2019] [Indexed: 05/30/2023]
Abstract
Water limitation is one of the major factors reducing crop productivity worldwide. In order to develop efficient breeding strategies to improve drought tolerance, accurate methods to identify when a plant reduces growth as a consequence of water deficit have yet to be established. In perennial ryegrass (Lolium perenne L.), an important forage grass of the Poaceae family, leaf elongation is a key factor determining plant growth and hence forage yield. Although leaf elongation has been shown to be temperature-dependent under non-stress conditions, the impact of water limitation on leaf elongation in perennial ryegrass is poorly understood. We describe a method for quantifying tolerance to water deficit based on leaf elongation in relation to temperature and soil moisture in perennial ryegrass. With decreasing soil moisture, three growth response phases were identified: first, a "normal" phase where growth is mainly determined by temperature, second a "slow" phase where leaf elongation decreases proportionally to soil water potential and third an "arrest" phase where leaf growth terminates. A custom R function was able to quantify the points which demarcate these phases and can be used to describe the response of plants to water deficit. Applied to different perennial ryegrass genotypes, this function revealed significant genotypic variation in the response of leaf growth to temperature and soil moisture. Dynamic phenotyping of leaf elongation can be used as a tool to accurately quantify tolerance to water deficit in perennial ryegrass and to improve this trait by breeding. Moreover, the tools presented here are applicable to study the plant response to other stresses in species with linear, graminoid leaf morphology.
Collapse
Affiliation(s)
- Steven Yates
- Molecular Plant Breeding, Department of Environmental Systems Science, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - Kristina Jaškūnė
- Laboratory of Genetics and Physiology, Institute of Agriculture, Lithuanian Research Centre for Agriculture and Forestry, Akademija, Lithuania
| | - Frank Liebisch
- Crop Science, Institute of Agricultural Sciences, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
| | - Sebastian Nagelmüller
- Crop Science, Institute of Agricultural Sciences, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
| | - Norbert Kirchgessner
- Crop Science, Institute of Agricultural Sciences, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
| | - Roland Kölliker
- Molecular Plant Breeding, Department of Environmental Systems Science, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - Achim Walter
- Crop Science, Institute of Agricultural Sciences, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
| | - Gintaras Brazauskas
- Laboratory of Genetics and Physiology, Institute of Agriculture, Lithuanian Research Centre for Agriculture and Forestry, Akademija, Lithuania
| | - Bruno Studer
- Molecular Plant Breeding, Department of Environmental Systems Science, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| |
Collapse
|
33
|
Ribeiro IA, Voltolini TV, Simões WL, Ferreira MAJDF, Sobreira AM, Gois GC. Responses of forage watermelon genotypes submitted to different water supply. BIOL RHYTHM RES 2019. [DOI: 10.1080/09291016.2019.1594122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Isadora Almeida Ribeiro
- Postgraduate Program in Animal Sciences, Federal University of San Francisco valley, Petrolina, Brazil
| | | | - Welson Lima Simões
- Brazilian Agricultural Research Corporation, EMBRAPA Semiarid, Petrolina, Brazil
| | | | - Alysson Menezes Sobreira
- Postgraduate Program in Plant production, Federal University Rural of Pernambuco, Serra Talhada, Brazil
| | - Glayciane Costa Gois
- Postgraduate Program in Veterinary Sciences in the Semi-Arid, PNPD-CAPES, Federal University of San Francisco valley, Petrolina, Brazil
| |
Collapse
|
34
|
Lanna AC, Silva RA, Ferraresi TM, Mendonça JA, Coelho GRC, Moreira AS, Valdisser PAMR, Brondani C, Vianello RP. Physiological characterization of common bean (Phaseolus vulgaris L.) under abiotic stresses for breeding purposes. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:31149-31164. [PMID: 30187414 DOI: 10.1007/s11356-018-3012-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2017] [Accepted: 08/20/2018] [Indexed: 05/13/2023]
Abstract
In the Brazilian wet and dry seasons, common beans (Phaseolus vulgaris L.) are grown under rainfed conditions with unexpected episodes of drought and high temperatures. The objective of this study was to evaluate the physiological mechanisms associated with drought adaptation traits in landraces and line/cultivars of beans from the Andean and Mesoamerican gene pools. Twenty-five genotypes, contrasting in terms of drought tolerance, were evaluated in a phenotyping platform under irrigated and rainfed conditions. Agronomic and physiological parameters such as grain yield, shoot structures, gas exchange, water potential, and osmotic adjustment were evaluated. The stress intensity was estimated to be 0.57, and the grain yield reduction ranged from 22 to 89%. Seven accessions, representative of the Andean and Mesoamerican germplasm (CF 200012, CF 240056, CF 250002, CF 900004, CNF 4497, CNF 7382, and SEA 5), presented superior performance in grain yield with and without stresses. The physiological responses under abiotic stresses were highly variable among the genotypes, and two Mesoamerican accessions (CF 200012 and SEA 5) showed more favorable adaptive responses. As the main secondary physiological traits, gas exchange and osmotic adjustment should be evaluated together with the grain yield to increase the selection efficiency of abiotic stresses-tolerant common bean lines.
Collapse
Affiliation(s)
- Anna Cristina Lanna
- Embrapa Rice and Beans, Rodovia GO-462, Km 12, C.P. 179, Santo Antônio de Goiás, GO, 75375-000, Brazil.
| | - Renato Adolfo Silva
- Limagrain Brazil S. A, Rodovia Br 060, km 171, Goiânia, GO, 74000-000, Brazil
| | - Tatiana Maris Ferraresi
- Embrapa Rice and Beans, Rodovia GO-462, Km 12, C.P. 179, Santo Antônio de Goiás, GO, 75375-000, Brazil
| | - João Antônio Mendonça
- Embrapa Rice and Beans, Rodovia GO-462, Km 12, C.P. 179, Santo Antônio de Goiás, GO, 75375-000, Brazil
| | | | - Alécio Souza Moreira
- Embrapa Cassava and Fruticulture/Araraquara Advanced Field, Araraquara, SP, 14807-040, Brazil
| | | | - Claudio Brondani
- Embrapa Rice and Beans, Rodovia GO-462, Km 12, C.P. 179, Santo Antônio de Goiás, GO, 75375-000, Brazil
| | - Rosana Pereira Vianello
- Embrapa Rice and Beans, Rodovia GO-462, Km 12, C.P. 179, Santo Antônio de Goiás, GO, 75375-000, Brazil
| |
Collapse
|
35
|
Feldman MJ, Ellsworth PZ, Fahlgren N, Gehan MA, Cousins AB, Baxter I. Components of Water Use Efficiency Have Unique Genetic Signatures in the Model C 4 Grass Setaria. PLANT PHYSIOLOGY 2018; 178:699-715. [PMID: 30093527 PMCID: PMC6181048 DOI: 10.1104/pp.18.00146] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Accepted: 07/02/2018] [Indexed: 05/04/2023]
Abstract
Plant growth and water use are interrelated processes influenced by genetically controlled morphological and biochemical characteristics. Improving plant water use efficiency (WUE) to sustain growth in different environments is an important breeding objective that can improve crop yields and enhance agricultural sustainability. However, genetic improvement of WUE using traditional methods has proven difficult due to the low throughput and environmental heterogeneity of field settings. To overcome these limitations, this study utilizes a high-throughput phenotyping platform to quantify plant size and water use of an interspecific Setaria italica × Setaria viridis recombinant inbred line population at daily intervals in both well-watered and water-limited conditions. Our findings indicate that measurements of plant size and water use are correlated strongly in this system; therefore, a linear modeling approach was used to partition this relationship into predicted values of plant size given water use and deviations from this relationship at the genotype level. The resulting traits describing plant size, water use, and WUE all were heritable and responsive to soil water availability, allowing for a genetic dissection of the components of plant WUE under different watering treatments. Linkage mapping identified major loci underlying two different pleiotropic components of WUE. This study indicates that alleles controlling WUE derived from both wild and domesticated accessions can be utilized to predictably modulate trait values given a specified precipitation regime in the model C4 genus Setaria.
Collapse
Affiliation(s)
- Max J Feldman
- Donald Danforth Plant Science Center, St. Louis, Missouri 63132
| | - Patrick Z Ellsworth
- School of Biological Sciences, Washington State University, Pullman, Washington 99164
| | - Noah Fahlgren
- Donald Danforth Plant Science Center, St. Louis, Missouri 63132
| | - Malia A Gehan
- Donald Danforth Plant Science Center, St. Louis, Missouri 63132
| | - Asaph B Cousins
- School of Biological Sciences, Washington State University, Pullman, Washington 99164
| | - Ivan Baxter
- Donald Danforth Plant Science Center, St. Louis, Missouri 63132
| |
Collapse
|
36
|
Climate change to severely impact West African basin scale irrigation in 2 °C and 1.5 °C global warming scenarios. Sci Rep 2018; 8:14395. [PMID: 30258078 PMCID: PMC6158170 DOI: 10.1038/s41598-018-32736-0] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2017] [Accepted: 09/07/2018] [Indexed: 11/08/2022] Open
Abstract
West Africa is in general limited to rainfed agriculture. It lacks irrigation opportunities and technologies that are applied in many economically developed nations. A warming climate along with an increasing population and wealth has the potential to further strain the region's potential to meet future food needs. In this study, we investigate West Africa's hydrological potential to increase agricultural productivity through the implementation of large-scale water storage and irrigation. A 23-member ensemble of Regional Climate Models is applied to assess changes in hydrologically relevant variables under 2 °C and 1.5 °C global warming scenarios according to the UNFCCC 2015 Conference of Parties (COP 21) agreement. Changes in crop water demand, irrigation water need, water availability and the difference between water availability and irrigation water needs, here referred as basin potential, are presented for ten major river basins covering entire West Africa. Under the 2 °C scenario, crop water demand and irrigation water needs are projected to substantially increase with the largest changes in the Sahel and Gulf of Guinea respectively. At the same time, irrigation potential, which is directly controlled by the climate, is projected to decrease even in regions where water availability increases. This indicates that West African river basins will likely face severe freshwater shortages thus limiting sustainable agriculture. We conclude a general decline in the basin-scale irrigation potential in the event of large-scale irrigation development under 2 °C global warming. Reducing the warming to 1.5 °C decreases these impacts by as much as 50%, suggesting that the region of West Africa clearly benefits from efforts of enhanced mitigation.
Collapse
|
37
|
Li X, Xiao J, He B, Altaf Arain M, Beringer J, Desai AR, Emmel C, Hollinger DY, Krasnova A, Mammarella I, Noe SM, Ortiz PS, Rey-Sanchez AC, Rocha AV, Varlagin A. Solar-induced chlorophyll fluorescence is strongly correlated with terrestrial photosynthesis for a wide variety of biomes: First global analysis based on OCO-2 and flux tower observations. GLOBAL CHANGE BIOLOGY 2018; 24:3990-4008. [PMID: 29733483 DOI: 10.1111/gcb.14297] [Citation(s) in RCA: 94] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Revised: 04/15/2018] [Accepted: 04/18/2018] [Indexed: 05/27/2023]
Abstract
Solar-induced chlorophyll fluorescence (SIF) has been increasingly used as a proxy for terrestrial gross primary productivity (GPP). Previous work mainly evaluated the relationship between satellite-observed SIF and gridded GPP products both based on coarse spatial resolutions. Finer resolution SIF (1.3 km × 2.25 km) measured from the Orbiting Carbon Observatory-2 (OCO-2) provides the first opportunity to examine the SIF-GPP relationship at the ecosystem scale using flux tower GPP data. However, it remains unclear how strong the relationship is for each biome and whether a robust, universal relationship exists across a variety of biomes. Here we conducted the first global analysis of the relationship between OCO-2 SIF and tower GPP for a total of 64 flux sites across the globe encompassing eight major biomes. OCO-2 SIF showed strong correlations with tower GPP at both midday and daily timescales, with the strongest relationship observed for daily SIF at the 757 nm (R2 = 0.72, p < 0.0001). Strong linear relationships between SIF and GPP were consistently found for all biomes (R2 = 0.57-0.79, p < 0.0001) except evergreen broadleaf forests (R2 = 0.16, p < 0.05) at the daily timescale. A higher slope was found for C4 grasslands and croplands than for C3 ecosystems. The generally consistent slope of the relationship among biomes suggests a nearly universal rather than biome-specific SIF-GPP relationship, and this finding is an important distinction and simplification compared to previous results. SIF was mainly driven by absorbed photosynthetically active radiation and was also influenced by environmental stresses (temperature and water stresses) that determine photosynthetic light use efficiency. OCO-2 SIF generally had a better performance for predicting GPP than satellite-derived vegetation indices and a light use efficiency model. The universal SIF-GPP relationship can potentially lead to more accurate GPP estimates regionally or globally. Our findings revealed the remarkable ability of finer resolution SIF observations from OCO-2 and other new or future missions (e.g., TROPOMI, FLEX) for estimating terrestrial photosynthesis across a wide variety of biomes and identified their potential and limitations for ecosystem functioning and carbon cycle studies.
Collapse
Affiliation(s)
- Xing Li
- Earth Systems Research Center, Institute for the Study of Earth, Oceans, and Space, University of New Hampshire, Durham, New Hampshire
- School of Resources and Environment, University of Electronic Science and Technology of China, Chengdu, China
| | - Jingfeng Xiao
- Earth Systems Research Center, Institute for the Study of Earth, Oceans, and Space, University of New Hampshire, Durham, New Hampshire
| | - Binbin He
- School of Resources and Environment, University of Electronic Science and Technology of China, Chengdu, China
- Center for Information Geoscience, University of Electronic Science and Technology of China, Chengdu, China
| | - M Altaf Arain
- McMaster Centre for Climate Change and School of Geography and Earth Sciences, McMaster University, Hamilton, ON, Canada
| | - Jason Beringer
- The UWA school of Agriculture and Environment, The University of Western Australia, Crawley, WA, Australia
| | - Ankur R Desai
- Department of Atmospheric and Oceanic Sciences, University of Wisconsin-Madison, Madison, Wisconsin
| | - Carmen Emmel
- Department of Environmental Systems Science, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - David Y Hollinger
- Northern Research Station, USDA Forest Service, Durham, New Hampshire
| | - Alisa Krasnova
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
| | - Ivan Mammarella
- Faculty of Science, Institute for Atmosphere and Earth System Research/Physics, University of Helsinki, Helsinki, Finland
| | - Steffen M Noe
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
| | - Penélope Serrano Ortiz
- Instituto Interuniversitario de Investigación del Sistema Tierra en Andalucía (IISTA-CEAMA), Universidad de Granada, Granada, Spain
| | - A Camilo Rey-Sanchez
- Department of Civil, Environmental and Geodetic Engineering, The Ohio State University, Columbus, Ohio
| | - Adrian V Rocha
- Department of Biological Sciences and the Environmental Change Initiative, University of Notre Dame, Notre Dame, Indiana
| | - Andrej Varlagin
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russia
| |
Collapse
|
38
|
Tardieu F, Cabrera-Bosquet L, Pridmore T, Bennett M. Plant Phenomics, From Sensors to Knowledge. Curr Biol 2018; 27:R770-R783. [PMID: 28787611 DOI: 10.1016/j.cub.2017.05.055] [Citation(s) in RCA: 226] [Impact Index Per Article: 37.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Major improvements in crop yield are needed to keep pace with population growth and climate change. While plant breeding efforts have greatly benefited from advances in genomics, profiling the crop phenome (i.e., the structure and function of plants) associated with allelic variants and environments remains a major technical bottleneck. Here, we review the conceptual and technical challenges facing plant phenomics. We first discuss how, given plants' high levels of morphological plasticity, crop phenomics presents distinct challenges compared with studies in animals. Next, we present strategies for multi-scale phenomics, and describe how major improvements in imaging, sensor technologies and data analysis are now making high-throughput root, shoot, whole-plant and canopy phenomic studies possible. We then suggest that research in this area is entering a new stage of development, in which phenomic pipelines can help researchers transform large numbers of images and sensor data into knowledge, necessitating novel methods of data handling and modelling. Collectively, these innovations are helping accelerate the selection of the next generation of crops more sustainable and resilient to climate change, and whose benefits promise to scale from physiology to breeding and to deliver real world impact for ongoing global food security efforts.
Collapse
Affiliation(s)
- François Tardieu
- INRA, Laboratoire d'Ecophysiologie des Plantes sous Stress Environnementaux, F34060, Montpellier, France.
| | - Llorenç Cabrera-Bosquet
- INRA, Laboratoire d'Ecophysiologie des Plantes sous Stress Environnementaux, F34060, Montpellier, France
| | - Tony Pridmore
- School of Computer Science, University of Nottingham, NG8 1BB, UK
| | - Malcolm Bennett
- Plant & Crop Sciences, School of Biosciences, University of Nottingham, LE12 3RD, UK.
| |
Collapse
|
39
|
Abhinandan K, Skori L, Stanic M, Hickerson NMN, Jamshed M, Samuel MA. Abiotic Stress Signaling in Wheat - An Inclusive Overview of Hormonal Interactions During Abiotic Stress Responses in Wheat. FRONTIERS IN PLANT SCIENCE 2018; 9:734. [PMID: 29942321 PMCID: PMC6004395 DOI: 10.3389/fpls.2018.00734] [Citation(s) in RCA: 78] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Accepted: 05/15/2018] [Indexed: 05/19/2023]
Abstract
Rapid global warming directly impacts agricultural productivity and poses a major challenge to the present-day agriculture. Recent climate change models predict severe losses in crop production worldwide due to the changing environment, and in wheat, this can be as large as 42 Mt/°C rise in temperature. Although wheat occupies the largest total harvested area (38.8%) among the cereals including rice and maize, its total productivity remains the lowest. The major production losses in wheat are caused more by abiotic stresses such as drought, salinity, and high temperature than by biotic insults. Thus, understanding the effects of these stresses becomes indispensable for wheat improvement programs which have depended mainly on the genetic variations present in the wheat genome through conventional breeding. Notably, recent biotechnological breakthroughs in the understanding of gene functions and access to whole genome sequences have opened new avenues for crop improvement. Despite the availability of such resources in wheat, progress is still limited to the understanding of the stress signaling mechanisms using model plants such as Arabidopsis, rice and Brachypodium and not directly using wheat as the model organism. This review presents an inclusive overview of the phenotypic and physiological changes in wheat due to various abiotic stresses followed by the current state of knowledge on the identified mechanisms of perception and signal transduction in wheat. Specifically, this review provides an in-depth analysis of different hormonal interactions and signaling observed during abiotic stress signaling in wheat.
Collapse
Affiliation(s)
| | | | | | | | | | - Marcus A. Samuel
- Department of Biological Sciences, University of Calgary, Calgary, AB, Canada
| |
Collapse
|
40
|
Duan L, Han J, Guo Z, Tu H, Yang P, Zhang D, Fan Y, Chen G, Xiong L, Dai M, Williams K, Corke F, Doonan JH, Yang W. Novel Digital Features Discriminate Between Drought Resistant and Drought Sensitive Rice Under Controlled and Field Conditions. FRONTIERS IN PLANT SCIENCE 2018; 9:492. [PMID: 29719548 PMCID: PMC5913589 DOI: 10.3389/fpls.2018.00492] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 04/03/2018] [Indexed: 05/21/2023]
Abstract
Dynamic quantification of drought response is a key issue both for variety selection and for functional genetic study of rice drought resistance. Traditional assessment of drought resistance traits, such as stay-green and leaf-rolling, has utilized manual measurements, that are often subjective, error-prone, poorly quantified and time consuming. To relieve this phenotyping bottleneck, we demonstrate a feasible, robust and non-destructive method that dynamically quantifies response to drought, under both controlled and field conditions. Firstly, RGB images of individual rice plants at different growth points were analyzed to derive 4 features that were influenced by imposition of drought. These include a feature related to the ability to stay green, which we termed greenness plant area ratio (GPAR) and 3 shape descriptors [total plant area/bounding rectangle area ratio (TBR), perimeter area ratio (PAR) and total plant area/convex hull area ratio (TCR)]. Experiments showed that these 4 features were capable of discriminating reliably between drought resistant and drought sensitive accessions, and dynamically quantifying the drought response under controlled conditions across time (at either daily or half hourly time intervals). We compared the 3 shape descriptors and concluded that PAR was more robust and sensitive to leaf-rolling than the other shape descriptors. In addition, PAR and GPAR proved to be effective in quantification of drought response in the field. Moreover, the values obtained in field experiments using the collection of rice varieties were correlated with those derived from pot-based experiments. The general applicability of the algorithms is demonstrated by their ability to probe archival Miscanthus data previously collected on an independent platform. In conclusion, this image-based technology is robust providing a platform-independent tool for quantifying drought response that should be of general utility for breeding and functional genomics in future.
Collapse
Affiliation(s)
- Lingfeng Duan
- National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Agricultural Bioinformatics Key Laboratory of Hubei Province, College of Engineering, Huazhong Agricultural University, Wuhan, China
| | - Jiwan Han
- National Plant Phenomics Centre, Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, United Kingdom
| | - Zilong Guo
- National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Agricultural Bioinformatics Key Laboratory of Hubei Province, College of Engineering, Huazhong Agricultural University, Wuhan, China
| | - Haifu Tu
- National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Agricultural Bioinformatics Key Laboratory of Hubei Province, College of Engineering, Huazhong Agricultural University, Wuhan, China
| | - Peng Yang
- National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Agricultural Bioinformatics Key Laboratory of Hubei Province, College of Engineering, Huazhong Agricultural University, Wuhan, China
| | - Dong Zhang
- National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Agricultural Bioinformatics Key Laboratory of Hubei Province, College of Engineering, Huazhong Agricultural University, Wuhan, China
| | - Yuan Fan
- National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Agricultural Bioinformatics Key Laboratory of Hubei Province, College of Engineering, Huazhong Agricultural University, Wuhan, China
| | - Guoxing Chen
- National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Agricultural Bioinformatics Key Laboratory of Hubei Province, College of Engineering, Huazhong Agricultural University, Wuhan, China
| | - Lizhong Xiong
- National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Agricultural Bioinformatics Key Laboratory of Hubei Province, College of Engineering, Huazhong Agricultural University, Wuhan, China
| | - Mingqiu Dai
- National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Agricultural Bioinformatics Key Laboratory of Hubei Province, College of Engineering, Huazhong Agricultural University, Wuhan, China
| | - Kevin Williams
- National Plant Phenomics Centre, Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, United Kingdom
| | - Fiona Corke
- National Plant Phenomics Centre, Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, United Kingdom
| | - John H. Doonan
- National Plant Phenomics Centre, Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, United Kingdom
| | - Wanneng Yang
- National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Agricultural Bioinformatics Key Laboratory of Hubei Province, College of Engineering, Huazhong Agricultural University, Wuhan, China
| |
Collapse
|
41
|
Rahmati M, Mirás-Avalos JM, Valsesia P, Lescourret F, Génard M, Davarynejad GH, Bannayan M, Azizi M, Vercambre G. Disentangling the Effects of Water Stress on Carbon Acquisition, Vegetative Growth, and Fruit Quality of Peach Trees by Means of the QualiTree Model. FRONTIERS IN PLANT SCIENCE 2018; 9:3. [PMID: 29416545 PMCID: PMC5788000 DOI: 10.3389/fpls.2018.00003] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2017] [Accepted: 01/03/2018] [Indexed: 05/03/2023]
Abstract
Climate change projections predict warmer and drier conditions. In general, moderate to severe water stress reduce plant vegetative growth and leaf photosynthesis. However, vegetative and reproductive growths show different sensitivities to water deficit. In fruit trees, water restrictions may have serious implications not only on tree growth and yield, but also on fruit quality, which might be improved. Therefore, it is of paramount importance to understand the complex interrelations among the physiological processes involved in within-tree carbon acquisition and allocation, water uptake and transpiration, organ growth, and fruit composition when affected by water stress. This can be studied using process-based models of plant functioning, which allow assessing the sensitivity of various physiological processes to water deficit and their relative impact on vegetative growth and fruit quality. In the current study, an existing fruit-tree model (QualiTree) was adapted for describing the water stress effects on peach (Prunus persica L. Batsch) vegetative growth, fruit size and composition. First, an energy balance calculation at the fruit-bearing shoot level and a water transfer formalization within the plant were integrated into the model. Next, a reduction function of vegetative growth according to tree water status was added to QualiTree. Then, the model was parameterized and calibrated for a late-maturing peach cultivar ("Elberta") under semi-arid conditions, and for three different irrigation practices. Simulated vegetative and fruit growth variability over time was consistent with observed data. Sugar concentrations in fruit flesh were well simulated. Finally, QualiTree allowed for determining the relative importance of photosynthesis and vegetative growth reduction on carbon acquisition, plant growth and fruit quality under water constrains. According to simulations, water deficit impacted vegetative growth first through a direct effect on its sink strength, and; secondly, through an indirect reducing effect on photosynthesis. Fruit composition was moderately affected by water stress. The enhancements performed in the model broadened its predictive capabilities and proved that QualiTree allows for a better understanding of the water stress effects on fruit-tree functioning and might be useful for designing innovative horticultural practices in a changing climate scenario.
Collapse
Affiliation(s)
- Mitra Rahmati
- UR 1115, Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique, Avignon, France
- Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran
| | - José M. Mirás-Avalos
- UR 1115, Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique, Avignon, France
| | - Pierre Valsesia
- UR 1115, Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique, Avignon, France
| | - Françoise Lescourret
- UR 1115, Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique, Avignon, France
| | - Michel Génard
- UR 1115, Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique, Avignon, France
| | | | - Mohammad Bannayan
- Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Majid Azizi
- Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Gilles Vercambre
- UR 1115, Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique, Avignon, France
| |
Collapse
|
42
|
Buchanan-Wollaston V, Wilson Z, Tardieu F, Beynon J, Denby K. Harnessing diversity from ecosystems to crops to genes. Food Energy Secur 2017. [DOI: 10.1002/fes3.106] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Affiliation(s)
| | - Zoe Wilson
- School of Biosciences; University of Nottingham; Sutton Boningon Campus Sutton Bonington, Leicestershire LE12 5RD U.K
| | - François Tardieu
- INRA Laboratoire d'Ecophysiologie des Plantes sous Stress Environnementaux (LEPSE); Montpellier France
| | - Jim Beynon
- School of Life Sciences; University of Warwick; Gibbet Hill, Coventry CV4 7AL U.K
| | - Katherine Denby
- Department of Biology; University of York; Heslington, York YO10 5DD U.K
| |
Collapse
|
43
|
Estendorfer J, Stempfhuber B, Haury P, Vestergaard G, Rillig MC, Joshi J, Schröder P, Schloter M. The Influence of Land Use Intensity on the Plant-Associated Microbiome of Dactylis glomerata L. FRONTIERS IN PLANT SCIENCE 2017; 8:930. [PMID: 28680426 PMCID: PMC5478725 DOI: 10.3389/fpls.2017.00930] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Accepted: 05/18/2017] [Indexed: 05/07/2023]
Abstract
In this study, we investigated the impact of different land use intensities (LUI) on the root-associated microbiome of Dactylis glomerata (orchardgrass). For this purpose, eight sampling sites with different land use intensity levels but comparable soil properties were selected in the southwest of Germany. Experimental plots covered land use levels from natural grassland up to intensively managed meadows. We used 16S rRNA gene based barcoding to assess the plant-associated community structure in the endosphere, rhizosphere and bulk soil of D. glomerata. Samples were taken at the reproductive stage of the plant in early summer. Our data indicated that roots harbor a distinct bacterial community, which clearly differed from the microbiome of the rhizosphere and bulk soil. Our results revealed Pseudomonadaceae, Enterobacteriaceae and Comamonadaceae as the most abundant endophytes independently of land use intensity. Rhizosphere and bulk soil were dominated also by Proteobacteria, but the most abundant families differed from those obtained from root samples. In the soil, the effect of land use intensity was more pronounced compared to root endophytes leading to a clearly distinct pattern of bacterial communities under different LUI from rhizosphere and bulk soil vs. endophytes. Overall, a change of community structure on the plant-soil interface was observed, as the number of shared OTUs between all three compartments investigated increased with decreasing land use intensity. Thus, our findings suggest a stronger interaction of the plant with its surrounding soil under low land use intensity. Furthermore, the amount and quality of available nitrogen was identified as a major driver for shifts in the microbiome structure in all compartments.
Collapse
Affiliation(s)
- Jennifer Estendorfer
- Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum MünchenNeuherberg, Germany
| | - Barbara Stempfhuber
- Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum MünchenNeuherberg, Germany
| | - Paula Haury
- Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum MünchenNeuherberg, Germany
| | - Gisle Vestergaard
- Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum MünchenNeuherberg, Germany
| | | | - Jasmin Joshi
- Biodiversity Research/Systematic Botany, Institute for Biochemistry und Biology, University of PotsdamPotsdam, Germany
| | - Peter Schröder
- Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum MünchenNeuherberg, Germany
- *Correspondence: Peter Schröder,
| | - Michael Schloter
- Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum MünchenNeuherberg, Germany
- Chair of Soil Science, Technical University of MunichFreising, Germany
| |
Collapse
|
44
|
Medina S, Vicente R, Amador A, Araus JL. Interactive Effects of Elevated [CO 2] and Water Stress on Physiological Traits and Gene Expression during Vegetative Growth in Four Durum Wheat Genotypes. FRONTIERS IN PLANT SCIENCE 2016; 7:1738. [PMID: 27920787 PMCID: PMC5118623 DOI: 10.3389/fpls.2016.01738] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2016] [Accepted: 11/04/2016] [Indexed: 05/08/2023]
Abstract
The interaction of elevated [CO2] and water stress will have an effect on the adaptation of durum wheat to future climate scenarios. For the Mediterranean basin these scenarios include the rising occurrence of water stress during the first part of the crop cycle. In this study, we evaluated the interactive effects of elevated [CO2] and moderate to severe water stress during the first part of the growth cycle on physiological traits and gene expression in four modern durum wheat genotypes. Physiological data showed that elevated [CO2] promoted plant growth but reduced N content. This was related to a down-regulation of Rubisco and N assimilation genes and up-regulation of genes that take part in C-N remobilization, which might suggest a higher N efficiency. Water restriction limited the stimulation of plant biomass under elevated [CO2], especially at severe water stress, while stomatal conductance and carbon isotope signature revealed a water saving strategy. Transcript profiles under water stress suggested an inhibition of primary C fixation and N assimilation. Nevertheless, the interactive effects of elevated [CO2] and water stress depended on the genotype and the severity of the water stress, especially for the expression of drought stress-responsive genes such as dehydrins, catalase, and superoxide dismutase. The network analysis of physiological traits and transcript levels showed coordinated shifts between both categories of parameters and between C and N metabolism at the transcript level, indicating potential genes and traits that could be used as markers for early vigor in durum wheat under future climate change scenarios. Overall the results showed that greater plant growth was linked to an increase in N content and expression of N metabolism-related genes and down-regulation of genes related to the antioxidant system. The combination of elevated [CO2] and severe water stress was highly dependent on the genotypic variability, suggesting specific genotypic adaptation strategies to environmental conditions.
Collapse
Affiliation(s)
- Susan Medina
- Integrative Crop Ecophysiology Group, Plant Physiology Section, Faculty of Biology, University of BarcelonaBarcelona, Spain
- Crop Physiology Laboratory, International Crops Research Institute for Semi-Arid TropicsPatancheru, India
| | - Rubén Vicente
- Integrative Crop Ecophysiology Group, Plant Physiology Section, Faculty of Biology, University of BarcelonaBarcelona, Spain
| | - Amaya Amador
- Unitat de Genòmica, Centres Científics i Tecnològics, Universitat de BarcelonaBarcelona, Spain
| | - José Luis Araus
- Integrative Crop Ecophysiology Group, Plant Physiology Section, Faculty of Biology, University of BarcelonaBarcelona, Spain
| |
Collapse
|
45
|
Khan A, Sovero V, Gemenet D. Genome-assisted Breeding For Drought Resistance. Curr Genomics 2016; 17:330-42. [PMID: 27499682 PMCID: PMC4955035 DOI: 10.2174/1389202917999160211101417] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2015] [Revised: 09/17/2015] [Accepted: 09/19/2015] [Indexed: 11/30/2022] Open
Abstract
Drought stress caused by unpredictable precipitation poses a major threat to food production worldwide, and its impact is only expected to increase with the further onset of climate change. Understanding the effect of drought stress on crops and plants' response is critical for developing improved varieties with stable high yield to fill a growing food gap from an increasing population depending on decreasing land and water resources. When a plant encounters drought stress, it may use multiple response types, depending on environmental conditions, drought stress intensity and duration, and the physiological stage of the plant. Drought stress responses can be divided into four broad types: drought escape, drought avoidance, drought tolerance, and drought recovery, each characterized by interacting mechanisms, which may together be referred to as drought resistance mechanisms. The complex nature of drought resistance requires a multi-pronged approach to breed new varieties with stable and enhanced yield under drought stress conditions. High throughput genomics and phenomics allow marker-assisted selection (MAS) and genomic selection (GS), which offer rapid and targeted improvement of populations and identification of parents for rapid genetic gains and improved drought-resistant varieties. Using these approaches together with appropriate genetic diversity, databases, analytical tools, and well-characterized drought stress scenarios, weather and soil data, new varieties with improved drought resistance corresponding to grower preferences can be introduced into target regions rapidly.
Collapse
Affiliation(s)
- Awais Khan
- International Potato Center (CIP), Avenida La Molina 1895, Lima 12,Peru
| | - Valpuri Sovero
- International Potato Center (CIP), Avenida La Molina 1895, Lima 12,Peru
| | - Dorcus Gemenet
- International Potato Center (CIP), Avenida La Molina 1895, Lima 12,Peru
| |
Collapse
|
46
|
Patanè C, Scordia D, Testa G, Cosentino SL. Physiological screening for drought tolerance in Mediterranean long-storage tomato. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2016; 249:25-34. [PMID: 27297987 DOI: 10.1016/j.plantsci.2016.05.006] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2016] [Revised: 05/06/2016] [Accepted: 05/09/2016] [Indexed: 05/18/2023]
Abstract
Long-storage tomato is a drought-tolerant plant traditionally cultivated under no water supply in semi-arid areas of Italy. In 2009, physiological traits of ten "long-storage" tomato lines cultivated under no irrigation were screened for low soil water tolerance. Leaf relative water content (RWC), proline content and leaf transpiration (E) were measured throughout the growing season. Instantaneous leaf water use efficiency was also calculated on a single date, as the ratio between net photosynthesis (A) and E. Close relationships were observed among the physiological parameters, positive for E vs. RWC and inverse for RWC and E vs. proline. Results indicate that the increase in proline concentration involves a water stress tolerance, and genotypes more sensitive to soil water deficit respond to drought stress through less proline in leaves. Close significant linear relationships (positive with RWC and E, negative with proline) were also found between fruit yield and all the physiological parameters examined. Among them, the most reliable indicator for yield prediction under water restriction was leaf transpiration rate as measured at the flowering stage. The study made it possible to understand the complex relationships between physiological processes, drought tolerance, and plant productivity in long-storage tomato, and to identify those traits that regulate plant physiology under low water availability.
Collapse
Affiliation(s)
- Cristina Patanè
- Consiglio Nazionale delle Ricerche (CNR), Istituto per la Valorizzazione del Legno e delle Specie Arboree (IVALSA), Sede Secondaria di Catania, Via P. Gaifami 18, 96126 Catania, Italy.
| | - Danilo Scordia
- Dipartimento di Agricoltura, Alimentazione e Ambiente (Di3A), Università degli Studi di Catania, Via Valdisavoia 5, 95123 Catania, Italy.
| | - Giorgio Testa
- Dipartimento di Agricoltura, Alimentazione e Ambiente (Di3A), Università degli Studi di Catania, Via Valdisavoia 5, 95123 Catania, Italy.
| | - Salvatore L Cosentino
- Dipartimento di Agricoltura, Alimentazione e Ambiente (Di3A), Università degli Studi di Catania, Via Valdisavoia 5, 95123 Catania, Italy.
| |
Collapse
|
47
|
Chen D, Wang S, Cao B, Cao D, Leng G, Li H, Yin L, Shan L, Deng X. Genotypic Variation in Growth and Physiological Response to Drought Stress and Re-Watering Reveals the Critical Role of Recovery in Drought Adaptation in Maize Seedlings. FRONTIERS IN PLANT SCIENCE 2016; 6:1241. [PMID: 26793218 PMCID: PMC4709455 DOI: 10.3389/fpls.2015.01241] [Citation(s) in RCA: 98] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2015] [Accepted: 12/21/2015] [Indexed: 05/19/2023]
Abstract
Non-irrigated crops in temperate climates and irrigated crops in arid climates are subjected to continuous cycles of water stress and re-watering. Thus, fast and efficient recovery from water stress may be among the key determinants of plant drought adaptation. The present study was designed to comparatively analyze the roles of drought resistance and drought recovery in drought adaptation and to investigate the physiological basis of genotypic variation in drought adaptation in maize (Zea mays) seedlings. As the seedlings behavior in growth associate with yield under drought, it could partly reflect the potential of drought adaptability. Growth and physiological responses to progressive drought stress and recovery were observed in seedlings of 10 maize lines. The results showed that drought adaptability is closely related to drought recovery (r = 0.714(**)), but not to drought resistance (r = 0.332). Drought induced decreases in leaf water content, water potential, osmotic potential, gas exchange parameters, chlorophyll content, Fv/Fm and nitrogen content, and increased H2O2 accumulation and lipid peroxidation. After recovery, most of these physiological parameters rapidly returned to normal levels. The physiological responses varied between lines. Further correlation analysis indicated that the physiological bases of drought resistance and drought recovery are definitely different, and that maintaining higher chlorophyll content (r = 0.874(***)) and Fv/Fm (r = 0.626(*)) under drought stress contributes to drought recovery. Our results suggest that both drought resistance and recovery are key determinants of plant drought adaptation, and that drought recovery may play a more important role than previously thought. In addition, leaf water potential, chlorophyll content and Fv/Fm could be used as efficient reference indicators in the selection of drought-adaptive genotypes.
Collapse
Affiliation(s)
- Daoqian Chen
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Northwest A&F UniversityYangling, China
- College of Life Sciences, Northwest A&F UniversityYangling, China
| | - Shiwen Wang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Northwest A&F UniversityYangling, China
- College of Natural Resources and Environment, Northwest A&F UniversityYangling, China
- Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water ResourcesYangling, China
| | - Beibei Cao
- College of Natural Resources and Environment, Northwest A&F UniversityYangling, China
| | - Dan Cao
- Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water ResourcesYangling, China
| | - Guohui Leng
- Beijing Zhongnong Chuangyou Seed Technology Corporation LimitedBeijing, China
| | - Hongbing Li
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Northwest A&F UniversityYangling, China
- Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water ResourcesYangling, China
| | - Lina Yin
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Northwest A&F UniversityYangling, China
- Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water ResourcesYangling, China
| | - Lun Shan
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Northwest A&F UniversityYangling, China
- Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water ResourcesYangling, China
| | - Xiping Deng
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Northwest A&F UniversityYangling, China
- College of Life Sciences, Northwest A&F UniversityYangling, China
- Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water ResourcesYangling, China
| |
Collapse
|
48
|
Adee E, Roozeboom K, Balboa GR, Schlegel A, Ciampitti IA. Drought-Tolerant Corn Hybrids Yield More in Drought-Stressed Environments with No Penalty in Non-stressed Environments. FRONTIERS IN PLANT SCIENCE 2016; 7:1534. [PMID: 27790237 PMCID: PMC5061753 DOI: 10.3389/fpls.2016.01534] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2016] [Accepted: 09/29/2016] [Indexed: 05/21/2023]
Abstract
The potential benefit of drought-tolerant (DT) corn (Zea mays L.) hybrids may depend on drought intensity, duration, crop growth stage (timing), and the array of drought tolerance mechanisms present in selected hybrids. We hypothesized that corn hybrids containing DT traits would produce more consistent yields compared to non-DT hybrids in the presence of drought stress. The objective of this study was to define types of production environments where DT hybrids have a yield advantage compared to non-DT hybrids. Drought tolerant and non-DT hybrid pairs of similar maturity were planted in six site-years with different soil types, seasonal evapotranspiration (ET), and vapor pressure deficit (VPD), representing a range of macro-environments. Irrigation regimes and seeding rates were used to create several micro-environments within each macro-environment. Hybrid response to the range of macro and micro-environmental stresses were characterized in terms of water use efficiency, grain yield, and environmental index. Yield advantage of DT hybrids was positively correlated with environment ET and VPD. Drought tolerant hybrids yielded 5 to 7% more than non-DT hybrids in high and medium ET environments (>430 mm ET), corresponding to seasonal VPD greater than 1200 Pa. Environmental index analysis confirmed that DT hybrids were superior in stressful environments. Yield advantage for DT hybrids appeared as yield dropped below 10.8 Mg ha-1 and averaged as much as 0.6-1 Mg ha-1 at the low yield range. Hybrids with DT technology can offer a degree of buffering against drought stress by minimizing yield reduction, but also maintaining a comparable yield potential in high yielding environments. Further studies should focus on the physiological mechanisms presented in the commercially available corn drought tolerant hybrids.
Collapse
|
49
|
Lopez G, Pallas B, Martinez S, Lauri PÉ, Regnard JL, Durel CÉ, Costes E. Genetic Variation of Morphological Traits and Transpiration in an Apple Core Collection under Well-Watered Conditions: Towards the Identification of Morphotypes with High Water Use Efficiency. PLoS One 2015; 10:e0145540. [PMID: 26717192 PMCID: PMC4699897 DOI: 10.1371/journal.pone.0145540] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2015] [Accepted: 12/04/2015] [Indexed: 11/18/2022] Open
Abstract
Water use efficiency (WUE) is a quantitative measurement which improvement is a major issue in the context of global warming and restrictions in water availability for agriculture. In this study, we aimed at studying the variation and genetic control of WUE and the respective role of its components (plant biomass and transpiration) in a perennial fruit crop. We explored an INRA apple core collection grown in a phenotyping platform to screen one-year-old scions for their accumulated biomass, transpiration and WUE under optimal growing conditions. Plant biomass was decompose into morphological components related to either growth or organ expansion. For each trait, nine mixed models were evaluated to account for the genetic effect and spatial heterogeneity inside the platform. The Best Linear Unbiased Predictors of genetic values were estimated after model selection. Mean broad-sense heritabilities were calculated from variance estimates. Heritability values indicated that biomass (0.76) and WUE (0.73) were under genetic control. This genetic control was lower in plant transpiration with an heritability of 0.54. Across the collection, biomass accounted for 70% of the WUE variability. A Hierarchical Ascendant Classification of the core collection indicated the existence of six groups of genotypes with contrasting morphology and WUE. Differences between morphotypes were interpreted as resulting from differences in the main processes responsible for plant growth: cell division leading to the generation of new organs and cell elongation leading to organ dimension. Although further studies will be necessary on mature trees with more complex architecture and multiple sinks such as fruits, this study is a first step for improving apple plant material for the use of water.
Collapse
Affiliation(s)
- Gerardo Lopez
- Institut National de la Recherche Agronomique, UMR Amélioration Génétique et Adaptation des Plantes méditerranéennes et tropicales, Campus Cirad, Montpellier, France
| | - Benoît Pallas
- Institut National de la Recherche Agronomique, UMR Amélioration Génétique et Adaptation des Plantes méditerranéennes et tropicales, Campus Cirad, Montpellier, France
| | - Sébastien Martinez
- Institut National de la Recherche Agronomique, UMR Amélioration Génétique et Adaptation des Plantes méditerranéennes et tropicales, Campus Cirad, Montpellier, France
| | - Pierre-Éric Lauri
- Institut National de la Recherche Agronomique, UMR Amélioration Génétique et Adaptation des Plantes méditerranéennes et tropicales, Campus Cirad, Montpellier, France
| | - Jean-Luc Regnard
- Montpellier SupAgro, UMR Amélioration Génétique et Adaptation des Plantes méditerranéennes et tropicales, Campus Cirad, Montpellier, France
| | - Charles-Éric Durel
- Institut National de la Recherche Agronomique, UMR Institut de Recherche en Horticulture et Semences, Beaucouzé, France
| | - Evelyne Costes
- Institut National de la Recherche Agronomique, UMR Amélioration Génétique et Adaptation des Plantes méditerranéennes et tropicales, Campus Cirad, Montpellier, France
| |
Collapse
|
50
|
Neumann K, Klukas C, Friedel S, Rischbeck P, Chen D, Entzian A, Stein N, Graner A, Kilian B. Dissecting spatiotemporal biomass accumulation in barley under different water regimes using high-throughput image analysis. PLANT, CELL & ENVIRONMENT 2015; 38:1980-96. [PMID: 25689277 DOI: 10.1111/pce.12516] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2014] [Revised: 01/29/2015] [Accepted: 01/30/2015] [Indexed: 05/18/2023]
Abstract
Phenotyping large numbers of genotypes still represents the rate-limiting step in many plant genetic experiments and in breeding. To address this issue, novel automated phenotyping technologies have been developed. We investigated for a core set of barley cultivars if high-throughput image analysis can help to dissect vegetative biomass accumulation in response to two different watering regimes under semi-controlled greenhouse conditions. We found that experiments, treatments, genotypes and genotype by environment interaction (G × E) can be characterized at any time point by certain digital traits. Biomass accumulation under control and stress conditions was highly heritable. Growth model-derived maximum vegetative biomass (K max), inflection point (I) and regrowth rate (k) were identified as promising candidate traits for genome-wide association studies. Drought stress symptoms can be visualized, dissected and modelled. Especially the highly heritable regrowth rate, which had the biggest influence on biomass accumulation in stress treatment, seems promising for future studies to improve drought tolerance in different crop species. A proof of concept study revealed potential correlations between digital traits obtained from pot experiments under greenhouse conditions and agronomic traits from field experiments. Overall, non-invasive, imaging-based phenotyping platforms under greenhouse conditions offer excellent possibilities for trait discovery, trait development and industrial applications.
Collapse
Affiliation(s)
- Kerstin Neumann
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Christian Klukas
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Swetlana Friedel
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
- BASF SE, Limburgerhof, Germany
| | - Pablo Rischbeck
- Technische Universität München (TUM), Freising-Weihenstephan, Germany
| | - Dijun Chen
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Alexander Entzian
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Nils Stein
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Andreas Graner
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Benjamin Kilian
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
- Innovation Center, BCS R&D, Bayer CropScience NV, Gent, Belgium
| |
Collapse
|