1
|
Ramey AM, Scott LC, Ahlstrom CA, Buck EJ, Williams AR, Kim Torchetti M, Stallknecht DE, Poulson RL. Molecular detection and characterization of highly pathogenic H5N1 clade 2.3.4.4b avian influenza viruses among hunter-harvested wild birds provides evidence for three independent introductions into Alaska. Virology 2024; 589:109938. [PMID: 37977084 DOI: 10.1016/j.virol.2023.109938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 11/02/2023] [Accepted: 11/06/2023] [Indexed: 11/19/2023]
Abstract
We detected and characterized highly pathogenic avian influenza viruses among hunter-harvested wild waterfowl inhabiting western Alaska during September-October 2022 using a molecular sequencing pipeline applied to RNA extracts derived directly from original swab samples. Genomic characterization of 10 H5 clade 2.3.4.4b avian influenza viruses detected with high confidence provided evidence for three independent viral introductions into Alaska. Our results highlight the utility and some potential limits of applying molecular processing approaches directly to RNA extracts from original swab samples for viral research and monitoring.
Collapse
Affiliation(s)
- Andrew M Ramey
- U.S. Geological Survey Alaska Science Center, Anchorage, AK, USA.
| | - Laura C Scott
- U.S. Geological Survey Alaska Science Center, Anchorage, AK, USA
| | | | - Evan J Buck
- U.S. Geological Survey Alaska Science Center, Anchorage, AK, USA
| | - Alison R Williams
- U.S. Fish and Wildlife Service Izembek National Wildlife Refuge, Cold Bay, Alaska, USA
| | - Mia Kim Torchetti
- U.S. Department of Agriculture National Veterinary Services Laboratories, Ames, IA, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, University of Georgia, Athens, GA, USA
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, University of Georgia, Athens, GA, USA
| |
Collapse
|
2
|
Youk S, Torchetti MK, Lantz K, Lenoch JB, Killian ML, Leyson C, Bevins SN, Dilione K, Ip HS, Stallknecht DE, Poulson RL, Suarez DL, Swayne DE, Pantin-Jackwood MJ. H5N1 highly pathogenic avian influenza clade 2.3.4.4b in wild and domestic birds: Introductions into the United States and reassortments, December 2021-April 2022. Virology 2023; 587:109860. [PMID: 37572517 DOI: 10.1016/j.virol.2023.109860] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Revised: 07/31/2023] [Accepted: 08/01/2023] [Indexed: 08/14/2023]
Abstract
Highly pathogenic avian influenza viruses (HPAIVs) of the A/goose/Guangdong/1/1996 lineage H5 clade 2.3.4.4b continue to have a devastating effect on domestic and wild birds. Full genome sequence analyses using 1369 H5N1 HPAIVs detected in the United States (U.S.) in wild birds, commercial poultry, and backyard flocks from December 2021 to April 2022, showed three phylogenetically distinct H5N1 virus introductions in the U.S. by wild birds. Unreassorted Eurasian genotypes A1 and A2 entered the Northeast Atlantic states, whereas a genetically distinct A3 genotype was detected in Alaska. The A1 genotype spread westward via wild bird migration and reassorted with North American wild bird avian influenza viruses. Reassortments of up to five internal genes generated a total of 21 distinct clusters; of these, six genotypes represented 92% of the HPAIVs examined. By phylodynamic analyses, most detections in domestic birds were shown to be point-source transmissions from wild birds, with limited farm-to-farm spread.
Collapse
Affiliation(s)
- Sungsu Youk
- Southeast Poultry Research Laboratory, U.S. National Poultry Research Laboratory, Agricultural Research Service, USDA, Athens, GA, USA; Microbiology Laboratory, Department of Medicine, College of Medicine, Chungbuk National University, Chungbuk, South Korea
| | - Mia Kim Torchetti
- National Veterinary Services Laboratories, Animal and Plant Health Inspection Service, USDA, Ames, IA, USA
| | - Kristina Lantz
- National Veterinary Services Laboratories, Animal and Plant Health Inspection Service, USDA, Ames, IA, USA
| | - Julianna B Lenoch
- Wildlife Services National Wildlife Disease Program, Animal and Plant Health Inspections Service, USDA, Fort Collins, CO, USA
| | - Mary Lea Killian
- National Veterinary Services Laboratories, Animal and Plant Health Inspection Service, USDA, Ames, IA, USA
| | - Christina Leyson
- Southeast Poultry Research Laboratory, U.S. National Poultry Research Laboratory, Agricultural Research Service, USDA, Athens, GA, USA
| | - Sarah N Bevins
- Wildlife Services National Wildlife Disease Program, Animal and Plant Health Inspections Service, USDA, Fort Collins, CO, USA
| | - Krista Dilione
- Wildlife Services National Wildlife Disease Program, Animal and Plant Health Inspections Service, USDA, Fort Collins, CO, USA
| | - Hon S Ip
- United States Geological Survey, National Wildlife Health Center, Laboratory Services Branch, Madison, WI, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA, USA
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA, USA
| | - David L Suarez
- Southeast Poultry Research Laboratory, U.S. National Poultry Research Laboratory, Agricultural Research Service, USDA, Athens, GA, USA
| | - David E Swayne
- Southeast Poultry Research Laboratory, U.S. National Poultry Research Laboratory, Agricultural Research Service, USDA, Athens, GA, USA
| | - Mary J Pantin-Jackwood
- Southeast Poultry Research Laboratory, U.S. National Poultry Research Laboratory, Agricultural Research Service, USDA, Athens, GA, USA.
| |
Collapse
|
3
|
Runstadler JA, Lowen AC, Kayali G, Tompkins SM, Albrecht RA, Fouchier RAM, Stallknecht DE, Lakdawala SS, Goodrum FD, Casadevall A, Enquist LW, Alwine JC, Imperiale MJ, Schultz-Cherry S, Webby RJ. Field Research Is Essential to Counter Virological Threats. J Virol 2023; 97:e0054423. [PMID: 37166327 DOI: 10.1128/jvi.00544-23] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/12/2023] Open
Abstract
The interface between humans and wildlife is changing and, with it, the potential for pathogen introduction into humans has increased. Avian influenza is a prominent example, with an ongoing outbreak showing the unprecedented expansion of both geographic and host ranges. Research in the field is essential to understand this and other zoonotic threats. Only by monitoring dynamic viral populations and defining their biology in situ can we gather the information needed to ensure effective pandemic preparation.
Collapse
Affiliation(s)
- Jonathan A Runstadler
- Department of Infectious Disease and Global Health, Cummings School of Veterinary Medicine, Tufts University, Boston, Massachusetts, USA
- Center for Research on Influenza Pathogenesis and Transmission (CRIPT) CEIRR, Icahn School of Medicine at Mount Sinai, New York, New York, USA
| | - Anice C Lowen
- Department of Microbiology and Immunology, Emory University School of Medicine, Atlanta, Georgia, USA
- Emory Center of Excellence for Influenza Research and Response (Emory-CEIRR), Atlanta, Georgia, USA
| | - Ghazi Kayali
- Human-Link DMCC, Dubai, UAE
- University of Texas School of Public Health, Houston, Texas, USA
- St Jude Center of Excellence for Influenza Research and Response (SJ-CEIRR), Memphis, Tennessee, USA
| | - S Mark Tompkins
- Center for Vaccines and Immunology, University of Georgia, Athens, Georgia, USA
- Center for Influenza Disease and Emergence Research (CIDER) CEIRR, Athens, Georgia, USA
| | - Randy A Albrecht
- Center for Research on Influenza Pathogenesis and Transmission (CRIPT) CEIRR, Icahn School of Medicine at Mount Sinai, New York, New York, USA
- Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA
- Global Health and Emerging Pathogens Institute, Icahn School of Medicine at Mount Sinai, New York, New York, USA
| | - Ron A M Fouchier
- Center for Research on Influenza Pathogenesis and Transmission (CRIPT) CEIRR, Icahn School of Medicine at Mount Sinai, New York, New York, USA
- Department of Viroscience, Erasmus Medical Center, Rotterdam, Netherlands
| | - David E Stallknecht
- St Jude Center of Excellence for Influenza Research and Response (SJ-CEIRR), Memphis, Tennessee, USA
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA
| | - Seema S Lakdawala
- Department of Microbiology and Immunology, Emory University School of Medicine, Atlanta, Georgia, USA
- Penn Center of Excellence for Influenza Research and Response (Penn-CEIRR), Philadelphia, Pennsylvania, USA
| | - Felicia D Goodrum
- Department of Immunobiology, University of Arizona, Tucson, Arizona, USA
| | - Arturo Casadevall
- Department of Molecular Microbiology and Immunology, Johns Hopkins School of Public Health, Baltimore, Maryland, USA
| | - Lynn W Enquist
- Department of Molecular Biology, Princeton University, Princeton, New Jersey, USA
| | - James C Alwine
- Department of Immunobiology, University of Arizona, Tucson, Arizona, USA
- Department of Cancer Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA
| | - Michael J Imperiale
- Department of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA
| | - Stacey Schultz-Cherry
- St Jude Center of Excellence for Influenza Research and Response (SJ-CEIRR), Memphis, Tennessee, USA
- Department of Infectious Diseases, St Jude Children's Research Hospital, Memphis, Tennessee, USA
| | - Richard J Webby
- St Jude Center of Excellence for Influenza Research and Response (SJ-CEIRR), Memphis, Tennessee, USA
- Department of Infectious Diseases, St Jude Children's Research Hospital, Memphis, Tennessee, USA
| |
Collapse
|
4
|
Young KT, Stephens JQ, Poulson RL, Stallknecht DE, Dimitrov KM, Butt SL, Stanton JB. Putative Novel Avian Paramyxovirus (AMPV) and Reidentification of APMV-2 and APMV-6 to the Species Level Based on Wild Bird Surveillance (United States, 2016-2018). Appl Environ Microbiol 2022; 88:e0046622. [PMID: 35612300 PMCID: PMC9195946 DOI: 10.1128/aem.00466-22] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 04/20/2022] [Indexed: 11/20/2022] Open
Abstract
Avian paramyxoviruses (APMVs) (subfamily Avulavirinae) have been isolated from over 200 species of wild and domestic birds around the world. The International Committee on Taxonomy of Viruses (ICTV) currently defines 22 different APMV species, with Avian orthoavulavirus 1 (whose viruses are designated APMV-1) being the most frequently studied due to its economic burden to the poultry industry. Less is known about other APMV species, including limited knowledge on the genetic diversity in wild birds, and there is a paucity of public whole-genome sequences for APMV-2 to -22. The goal of this study was to use MinION sequencing to genetically characterize APMVs isolated from wild bird swab samples collected during 2016 to 2018 in the United States. Multiplexed MinION libraries were prepared using a random strand-switching approach using 37 egg-cultured, influenza-negative, hemagglutination-positive samples. Forty-one APMVs were detected, with 37 APMVs having complete polymerase coding sequences allowing for species identification using ICTV's current Paramyxoviridae phylogenetic methodology. APMV-1, -4, -6, and -8 viruses were classified, one putative novel species (Avian orthoavulavirus 23) was identified from viruses isolated in this study, two putative new APMV species (Avian metaavulavirus 24 and 27) were identified from viruses isolated in this study and from retrospective GenBank sequences, and two putative new APMV species (Avian metaavulavirus 25 and 26) were identified solely from retrospective GenBank sequences. Furthermore, coinfections of APMVs were identified in four samples. The potential limitations of the branch length being the only species identification criterion and the potential benefit of a group pairwise distance analysis are discussed. IMPORTANCE Most species of APMVs are understudied and/or underreported, and many species were incidentally identified from asymptomatic wild birds; however, the disease significance of APMVs in wild birds is not fully determined. The rapid rise in high-throughput sequencing coupled with avian influenza surveillance programs have identified 12 different APMV species in the last decade and have challenged the resolution of classical serological methods to identify new viral species. Currently, ICTV's only criterion for Paramyxoviridae species classification is the requirement of a branch length of >0.03 using a phylogenetic tree constructed from polymerase (L) amino acid sequences. The results from this study identify one new APMV species, propose four additional new APMV species, and highlight that the criterion may have insufficient resolution for APMV species demarcation and that refinement or expansion of this criterion may need to be established for Paramyxoviridae species identification.
Collapse
Affiliation(s)
- Kelsey T. Young
- Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA
| | - Jazz Q. Stephens
- Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA
| | - Rebecca L. Poulson
- Department of Population Health, Southeastern Cooperative Wildlife Disease Study, University of Georgia, Athens, Georgia, USA
| | - David E. Stallknecht
- Department of Population Health, Southeastern Cooperative Wildlife Disease Study, University of Georgia, Athens, Georgia, USA
| | - Kiril M. Dimitrov
- Department of Virology, Texas A&M University, College Station, Texas, USA
| | - Salman L. Butt
- Department of Pathology, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - James B. Stanton
- Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA
| |
Collapse
|
5
|
Prosser DJ, Schley HL, Simmons N, Sullivan JD, Homyack J, Weegman M, Olsen GH, Berlin AM, Poulson RL, Stallknecht DE, Williams CK. A lesser scaup (Aythya affinis) naturally infected with Eurasian 2.3.4.4 highly pathogenic H5N1 avian influenza virus: Movement ecology and host factors. Transbound Emerg Dis 2022; 69:e2653-e2660. [PMID: 35678746 DOI: 10.1111/tbed.14614] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 05/27/2022] [Accepted: 06/02/2022] [Indexed: 01/11/2023]
Abstract
Despite the recognized role of wild waterfowl in the potential dispersal and transmission of highly pathogenic avian influenza (HPAI) virus, little is known about how infection affects these birds. This lack of information limits our ability to estimate viral spread in the event of an HPAI outbreak, thereby limiting our abilities to estimate and communicate risk. Here, we present telemetry data from a wild Lesser Scaup (Aythya affinis), captured during a separate ecology study in the Chesapeake Bay, Maryland. This bird tested positive for infection with clade 2.3.4.4 HPAI virus of the A/goose/Guangdong/1/1996 (Gs/GD) H5N1 lineage (results received post-release) during the 2021-2022 ongoing outbreaks in North America. While the infected bird was somewhat lighter than other adult males surgically implanted with transmitters (790 g, x̅ = 868 g, n = 11), it showed no clinical signs of infection at capture, during surgery, nor upon release. The bird died 3 days later-pathology undetermined as the specimen was not able to be recovered. Analysis of movement data within the 3-day window showed that the infected individual's maximum and average hourly movements (3894.3 and 428.8 m, respectively) were noticeably lower than noninfected conspecifics tagged and released the same day (x̅ = 21,594.5 and 1097.9 m, respectively; n = 4). We identified four instances where the infected bird had close contact (fixes located within 25 m and 15 min) with another marked bird during this time. Collectively, these data suggest that the HPAI-positive bird observed in this study may have been shedding virus for some period prior to death, with opportunities for direct bird-to-bird or environmental transmission. Although limited by low sample size and proximity to the time of tagging, we hope that these data will provide useful information as managers continue to respond to this ongoing outbreak event.
Collapse
Affiliation(s)
- Diann J Prosser
- Eastern Ecological Science Center, U.S. Geological Survey, Laurel, Maryland, USA
| | - Hannah L Schley
- Department of Entomology and Wildlife Ecology, University of Delaware, Newark, Delaware, USA
| | - Nathan Simmons
- Wildlife & Heritage Service, Maryland Department of Natural Resources, Wye Mills, Maryland, USA
| | - Jeffery D Sullivan
- Eastern Ecological Science Center, U.S. Geological Survey, Laurel, Maryland, USA
| | - Josh Homyack
- Wildlife & Heritage Service, Maryland Department of Natural Resources, Wye Mills, Maryland, USA
| | - Matthew Weegman
- Eastern Neck NWR, U.S. Fish and Wildlife Service, Rock Hall, Maryland, USA
| | - Glenn H Olsen
- Eastern Ecological Science Center, U.S. Geological Survey, Laurel, Maryland, USA
| | - Alicia M Berlin
- Eastern Ecological Science Center, U.S. Geological Survey, Laurel, Maryland, USA
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA
| | - Christopher K Williams
- Department of Entomology and Wildlife Ecology, University of Delaware, Newark, Delaware, USA
| |
Collapse
|
6
|
Prosser DJ, Chen J, Ahlstrom CA, Reeves AB, Poulson RL, Sullivan JD, McAuley D, Callahan CR, McGowan PC, Bahl J, Stallknecht DE, Ramey AM. Maintenance and dissemination of avian-origin influenza A virus within the northern Atlantic Flyway of North America. PLoS Pathog 2022; 18:e1010605. [PMID: 35666770 PMCID: PMC9203021 DOI: 10.1371/journal.ppat.1010605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Revised: 06/16/2022] [Accepted: 05/19/2022] [Indexed: 11/25/2022] Open
Abstract
Wild waterbirds, the natural reservoirs for avian influenza viruses, undergo migratory movements each year, connecting breeding and wintering grounds within broad corridors known as flyways. In a continental or global view, the study of virus movements within and across flyways is important to understanding virus diversity, evolution, and movement. From 2015 to 2017, we sampled waterfowl from breeding (Maine) and wintering (Maryland) areas within the Atlantic Flyway (AF) along the east coast of North America to investigate the spatio-temporal trends in persistence and spread of influenza A viruses (IAV). We isolated 109 IAVs from 1,821 cloacal / oropharyngeal samples targeting mallards (Anas platyrhynchos) and American black ducks (Anas rubripes), two species having ecological and conservation importance in the flyway that are also host reservoirs of IAV. Isolates with >99% nucleotide similarity at all gene segments were found between eight pairs of birds in the northern site across years, indicating some degree of stability among genome constellations and the possibility of environmental persistence. No movement of whole genome constellations were identified between the two parts of the flyway, however, virus gene flow between the northern and southern study locations was evident. Examination of banding records indicate direct migratory waterfowl movements between the two locations within an annual season, providing a mechanism for the inferred viral gene flow. Bayesian phylogenetic analyses provided evidence for virus dissemination from other North American wild birds to AF dabbling ducks (Anatinae), shorebirds (Charidriformes), and poultry (Galliformes). Evidence was found for virus dissemination from shorebirds to gulls (Laridae), and dabbling ducks to shorebirds and poultry. The findings from this study contribute to the understanding of IAV ecology in waterfowl within the AF.
Collapse
Affiliation(s)
- Diann J. Prosser
- U.S. Geological Survey, Eastern Ecological Science Center, Laurel, Maryland, United States of America
| | - Jiani Chen
- Center for Ecology of Infectious Diseases, Department of Infectious Diseases, Department of Epidemiology and Biostatistics, Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America
| | - Christina A. Ahlstrom
- U.S. Geological Survey, Alaska Science Center, Anchorage, Alaska, United States of America
| | - Andrew B. Reeves
- U.S. Geological Survey, Alaska Science Center, Anchorage, Alaska, United States of America
- U.S. Geological Survey, National Wildlife Health Center, Madison, Wisconsin, United States of America
| | - Rebecca L. Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America
| | - Jeffery D. Sullivan
- U.S. Geological Survey, Eastern Ecological Science Center, Laurel, Maryland, United States of America
| | - Daniel McAuley
- U.S. Geological Survey, Eastern Ecological Science Center, Laurel, Maryland, United States of America
| | - Carl R. Callahan
- U.S. Fish and Wildlife Service, Chesapeake Bay Field Office, Annapolis, Maryland, United States of America
| | - Peter C. McGowan
- U.S. Fish and Wildlife Service, Chesapeake Bay Field Office, Annapolis, Maryland, United States of America
| | - Justin Bahl
- Center for Ecology of Infectious Diseases, Department of Infectious Diseases, Department of Epidemiology and Biostatistics, Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America
| | - David E. Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America
| | - Andrew M. Ramey
- U.S. Geological Survey, Alaska Science Center, Anchorage, Alaska, United States of America
| |
Collapse
|
7
|
Stallknecht DE, Fojtik A, Carter DL, Crum-Bradley JA, Perez DR, Poulson RL. Naturally Acquired Antibodies to Influenza A Virus in Fall-Migrating North American Mallards. Vet Sci 2022; 9:214. [PMID: 35622742 PMCID: PMC9148056 DOI: 10.3390/vetsci9050214] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 04/15/2022] [Accepted: 04/23/2022] [Indexed: 01/27/2023] Open
Abstract
Although waterfowl are the primary reservoir for multiple subtypes of influenza A virus (IAV), our understanding of population immunity in naturally infected waterfowl is poorly understood. Population immunity may be an important driver of seasonal subtype predominance in waterfowl populations and may affect the potential for establishment of introduced IAV such as the Eurasian-like A/Goose/Guangdong/1/1996 lineage in these populations. Here, we examine the prevalence of naturally acquired antibodies to nucleoprotein (NP), hemagglutinin (H3, H4, H5), and neuraminidase (N1, N2, N6, N8) in early migrating mallards (Anas platyrhynchos) sampled in Northwest Minnesota during staging and early fall migration in September 2014, 2015, 2017, and 2018. Serologic results were compared to historic and contemporary virus isolation results from these same study sites. The prevalence of antibodies to NP ranged from 60.8−76.1% in hatch-year (HY) birds and from 86.0−92.7% in after-hatch-year (AHY, >1-year-old) mallards indicating a high level of previous infection with IAV early in the fall migration season. Neutralizing antibodies were detected against H3, H4, and H5 in all years as were antibodies to N1, N2, N6, and N8. A high proportion of NP seropositive ducks tested positive for antibodies to multiple HA and NA subtypes, and this was more common in the AHY age class. Antibody prevalence to the HA and NA subtypes included in this study were consistent with the predominance of H4N6 in these populations during all years and reflected a broadening of the antibody response with age. Additional work is needed to document the longevity of these immune responses, if and how they correlate with protection against IAV transmission, infection, and disease, and if, as detected in this study, they adequately describe the true extent of exposure to IAV or specific HA or NA subtypes.
Collapse
Affiliation(s)
- David E. Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, 589 D.W. Brooks Drive, Athens, GA 30602, USA; (D.E.S.); (A.F.); (D.L.C.); (J.A.C.-B.)
| | - Alinde Fojtik
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, 589 D.W. Brooks Drive, Athens, GA 30602, USA; (D.E.S.); (A.F.); (D.L.C.); (J.A.C.-B.)
| | - Deborah L. Carter
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, 589 D.W. Brooks Drive, Athens, GA 30602, USA; (D.E.S.); (A.F.); (D.L.C.); (J.A.C.-B.)
| | - Jo Anne Crum-Bradley
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, 589 D.W. Brooks Drive, Athens, GA 30602, USA; (D.E.S.); (A.F.); (D.L.C.); (J.A.C.-B.)
- Poultry Diagnostic and Research Center, Department of Population Health, College of Veterinary Medicine, University of Georgia, 953 College Station Road, Athens, GA 30602, USA;
| | - Daniel R. Perez
- Poultry Diagnostic and Research Center, Department of Population Health, College of Veterinary Medicine, University of Georgia, 953 College Station Road, Athens, GA 30602, USA;
| | - Rebecca L. Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, 589 D.W. Brooks Drive, Athens, GA 30602, USA; (D.E.S.); (A.F.); (D.L.C.); (J.A.C.-B.)
| |
Collapse
|
8
|
Ramey AM, Hill NJ, DeLiberto TJ, Gibbs SEJ, Camille Hopkins M, Lang AS, Poulson RL, Prosser DJ, Sleeman JM, Stallknecht DE, Wan X. Highly pathogenic avian influenza is an emerging disease threat to wild birds in North America. J Wildl Manage 2022. [DOI: 10.1002/jwmg.22171] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Andrew M. Ramey
- U.S. Geological Survey Alaska Science Center 4210 University Drive Anchorage AK 99508 USA
| | - Nichola J. Hill
- Department of Infectious Disease & Global Health, Cummings School of Veterinary Medicine Tufts University 200 Westboro Road North Grafton MA 01536 USA
| | - Thomas J. DeLiberto
- National Wildlife Disease Program, Wildlife Services, Animal and Plant Health Inspection Service U.S. Department of Agriculture 4101 LaPorte Avenue Fort Collins CO 80521 USA
| | - Samantha E. J. Gibbs
- Wildlife Health Office Natural Resource Program Center, National Wildlife Refuge System, U.S. Fish and Wildlife Service 16450 NW 31st Place Chiefland FL 32626 USA
| | - M. Camille Hopkins
- U.S. Geological Survey Ecosystems Mission Area 12201 Sunrise Valley Drive, MS 300 (Room 4A100F) Reston VA 20192 USA
| | - Andrew S. Lang
- Department of Biology Memorial University of Newfoundland 232 Elizabeth Avenue St. John's Newfoundland A1B 3X9 Canada
| | - Rebecca L. Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine University of Georgia 589 D.W. Brooks Drive Athens GA 30602 USA
| | - Diann J. Prosser
- U.S. Geological Survey Eastern Ecological Science Center at the Patuxent Research Refuge 12100 Beech Forest Road Laurel MD 20708 USA
| | - Jonathan M. Sleeman
- U.S. Geological Survey National Wildlife Health Center 6006 Schroeder Road Madison WI 53711 USA
| | - David E. Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine University of Georgia 589 D.W. Brooks Drive Athens GA 30602 USA
| | - Xiu‐Feng Wan
- Center for Influenza and Emerging Infectious Diseases (CIEID), Department of Molecular Microbiology and Immunology, Bond Life Sciences Center, Department of Electronic Engineering and Computer Science University of Missouri Columbia MO 65211 USA
| |
Collapse
|
9
|
Ramey AM, Reeves AB, Lagassé BJ, Patil V, Hubbard LE, Kolpin DW, McCleskey RB, Repert DA, Stallknecht DE, Poulson RL. Evidence for interannual persistence of infectious influenza A viruses in Alaska wetlands. Sci Total Environ 2022; 803:150078. [PMID: 34525758 PMCID: PMC9277558 DOI: 10.1016/j.scitotenv.2021.150078] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 08/26/2021] [Accepted: 08/28/2021] [Indexed: 06/13/2023]
Abstract
Influenza A viruses (IAVs) deposited by wild birds into the environment may lead to sporadic mortality events and economically costly outbreaks among domestic birds. There is a paucity of information, however, regarding the persistence of infectious IAVs within the environment following deposition. In this investigation, we assessed the persistence of 12 IAVs that were present in cloacal and/or oropharyngeal swabs of naturally infected ducks. Infectivity of these IAVs was monitored over approximately one year with each virus tested in five water types: (1) distilled water held in the lab at 4 °C and (2-5) filtered surface water from each of four Alaska sites and maintained in the field at ambient temperature. By evaluating infectivity of IAVs in ovo following sample retrieval at four successive time points, we observed declines in IAV infectivity through time. Many viruses persisted for extended periods, as evidenced by ≥25% of IAVs remaining infectious in replicate samples for each treatment type through three sampling time points (144-155 days post-sample collection) and two viruses remaining viable in a single replicate sample each when tested upon collection at a fourth time point (361-377 days post-sample collection). The estimated probability of persistence of infectious IAVs in all five water types was estimated to be between 0.25 and 0.75 during days 50-200 post-sample collection as inferred through Kaplan-Meier survival analysis. Our results provide evidence that IAVs may remain infectious for extended periods, up to or even exceeding one year, when maintained in surface waters under ambient temperatures. Therefore, wetlands may represent an important medium in which infectious IAVs may reside outside of a biotic reservoir.
Collapse
Affiliation(s)
- Andrew M Ramey
- U. S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA.
| | - Andrew B Reeves
- U. S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA.
| | - Benjamin J Lagassé
- U. S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA; Department of Biology and Wildlife, University of Alaska Fairbanks, P.O. Box 756100, Fairbanks, AK 99775, USA
| | - Vijay Patil
- U. S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA.
| | - Laura E Hubbard
- U. S. Geological Survey, Upper Midwest Water Science Center, 8505 Research Way, Middleton, WI 53562, USA.
| | - Dana W Kolpin
- U. S. Geological Survey, Central Midwest Water Science Center, 400 S. Clinton Street, Iowa City, IA 52244, USA.
| | - R Blaine McCleskey
- U. S. Geological Survey, Water Resources Mission Area, 3215 Marine Street, Building 6, Boulder, CO 80309, USA.
| | - Deborah A Repert
- U. S. Geological Survey, Water Resources Mission Area, 3215 Marine Street, Building 6, Boulder, CO 80309, USA.
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA.
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA.
| |
Collapse
|
10
|
Jerry C, Stallknecht DE, Leyson C, Berghaus R, Jordan B, Pantin-Jackwood M, França MS. Age-Associated Changes in Recombinant H5 Highly Pathogenic and Low Pathogenic Avian Influenza Hemagglutinin Tissue Binding in Domestic Poultry Species. Animals (Basel) 2021; 11:ani11082223. [PMID: 34438681 PMCID: PMC8388419 DOI: 10.3390/ani11082223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2021] [Revised: 07/11/2021] [Accepted: 07/18/2021] [Indexed: 11/16/2022] Open
Abstract
The 2014 outbreak of clade 2.3.4.4A highly pathogenic avian influenza (HPAI) led to the culling of millions of commercial chickens and turkeys and death of various wild bird species. In this outbreak, older chickens and turkeys were commonly infected, and succumbed to clinical disease compared to younger aged birds such chicken broilers. Some experimental studies using waterfowl species have shown age-related differences in susceptibility to clinical disease with HPAI viruses. Here, we evaluate differences in H5 Hemagglutinin (HA) tissue binding across age groups, using recombinant H5 HA (rHA) proteins generated using gene sequences from low pathogenic (A/mallard/MN/410/2000(H5N2 (LPAIV)) and a HPAIV (A/Northern pintail/Washington/40964/2014(H5N2)) influenza A virus (IAV). Respiratory and intestinal tracts from chickens, ducks (Mallard, Pekin, Muscovy) and turkeys of different age groups were used to detect rHA binding with protein histochemistry, which was quantified as the median area of binding (MAB) used for statistical analysis. There were species and tissue specific differences in the rHA binding among the age groups; however, turkeys had significant differences in the HPAIV rHA binding in the respiratory tract, with younger turkeys having higher levels of binding in the lung compared to the older group. In addition, in the intestinal tract, younger turkeys had higher levels of binding compared to the older birds. Using LPAIV, similar species and tissues, specific differences were seen among the age groups; however, only turkeys had overall significant differences in the respiratory tract MAB, with the older birds having higher levels of binding compared to the younger group. No age-related differences were seen in the overall intestinal tract rHA binding. Age-related differences in rHA binding of the LPAIV and HPAIV demonstrated in this study may partially, but not completely, explain differences in host susceptibility to infection observed during avian influenza outbreaks and in experimental infection studies.
Collapse
Affiliation(s)
- Carmen Jerry
- California Animal Health and Food Safety Laboratory System, University of California, Davis, 1550 N. Soderquist Road, Turlock, CA 95380, USA
- Correspondence:
| | - David E. Stallknecht
- Southeastern Cooperative Wildlife Disease Study, 589 D.W. Brooks Drive, Athens, GA 30602, USA;
| | - Christina Leyson
- Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, 934 College Station Road, Athens, GA 30602, USA; (C.L.); (M.P.-J.)
| | - Roy Berghaus
- Veterinary Medical Center, Department of Population Health, 2200 College Station Road, Athens, GA 30602, USA;
| | - Brian Jordan
- Poultry Diagnostic and Research Center, University of Georgia Athens, 953 College Station Road, Athens, GA 30602, USA; (B.J.); (M.S.F.)
| | - Mary Pantin-Jackwood
- Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, 934 College Station Road, Athens, GA 30602, USA; (C.L.); (M.P.-J.)
| | - Monique S. França
- Poultry Diagnostic and Research Center, University of Georgia Athens, 953 College Station Road, Athens, GA 30602, USA; (B.J.); (M.S.F.)
| |
Collapse
|
11
|
Criado MF, Moresco KA, Stallknecht DE, Swayne DE. Low-pathogenicity influenza viruses replicate differently in laughing gulls and mallards. Influenza Other Respir Viruses 2021; 15:701-706. [PMID: 34109758 PMCID: PMC8542958 DOI: 10.1111/irv.12878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Accepted: 05/16/2021] [Indexed: 11/26/2022] Open
Abstract
Wild aquatic birds are natural reservoirs of low-pathogenicity avian influenza viruses (LPAIVs). Laughing gulls inoculated with four gull-origin LPAIVs (H7N3, H6N4, H3N8, and H2N3) had a predominate respiratory infection. By contrast, mallards inoculated with two mallard-origin LPAIVs (H5N6 and H4N8) became infected and had similar virus titers in oropharyngeal (OP) and cloacal (CL) swabs. The trend toward predominate OP shedding in gulls suggest a greater role of direct bird transmission in maintenance, whereas mallards shedding suggests importance of fecal-oral transmission through water contamination. Additional infectivity and pathogenesis studies are needed to confirm this replication difference for LPAI viruses in gulls.
Collapse
Affiliation(s)
- Miria F Criado
- Southeast Poultry Research laboratory, United States National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, GA, USA
| | - Kira A Moresco
- Southeast Poultry Research laboratory, United States National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, GA, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA, USA
| | - David E Swayne
- Southeast Poultry Research laboratory, United States National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, GA, USA
| |
Collapse
|
12
|
Casey CL, Rathbun SL, Stallknecht DE, Ruder MG. Spatial Analysis of the 2017 Outbreak of Hemorrhagic Disease and Physiographic Region in the Eastern United States. Viruses 2021; 13:v13040550. [PMID: 33806137 PMCID: PMC8064433 DOI: 10.3390/v13040550] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 03/19/2021] [Accepted: 03/23/2021] [Indexed: 12/04/2022] Open
Abstract
Hemorrhagic disease (HD) is considered one of the most significant infectious diseases of white-tailed deer in North America. Investigations into environmental conditions associated with outbreaks suggest drought conditions are strongly correlated with outbreaks in some regions of the United States. However, during 2017, an HD outbreak occurred in the Eastern United States which appeared to be associated with a specific physiographic region, the Appalachian Plateau, and not drought conditions. The objective of this study was to determine if reported HD in white-tailed deer in 2017 was correlated with physiographic region. There were 456 reports of HD from 1605 counties across 26 states and 12 physiographic regions. Of the 93 HD reports confirmed by virus isolation, 76.3% (71/93) were identified as EHDV-2 and 66.2% (47/71) were from the Appalachian Plateau. A report of HD was 4.4 times more likely to occur in the Appalachian Plateau than not in 2017. Autologistic regression models suggested a statistically significant spatial dependence. The underlying factors explaining this correlation are unknown, but may be related to a variety of host, vector, or environmental factors. This unique outbreak and its implications for HD epidemiology highlight the importance for increased surveillance and reporting efforts in the future.
Collapse
Affiliation(s)
- Christine L. Casey
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, 589 D.W. Brooks Dive, Athens, GA 30602, USA; (C.L.C.); (D.E.S.)
- Kentucky Department of Fish and Wildlife Resources, 1 Sportsman’s Lane, Frankfort, KY 40601, USA
| | - Stephen L. Rathbun
- Department of Epidemiology & Biostatistics, College of Public Health, University of Georgia, 101 Buck Road, B.S. Miller Hall, Athens, GA 30606, USA;
| | - David E. Stallknecht
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, 589 D.W. Brooks Dive, Athens, GA 30602, USA; (C.L.C.); (D.E.S.)
| | - Mark G. Ruder
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, 589 D.W. Brooks Dive, Athens, GA 30602, USA; (C.L.C.); (D.E.S.)
- Correspondence:
| |
Collapse
|
13
|
Carter DL, Link P, Tan G, Stallknecht DE, Poulson RL. Influenza A Viruses in Whistling Ducks (Subfamily Dendrocygninae). Viruses 2021; 13:v13020192. [PMID: 33525360 PMCID: PMC7911599 DOI: 10.3390/v13020192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 01/25/2021] [Accepted: 01/27/2021] [Indexed: 11/23/2022] Open
Abstract
As compared to other Anseriformes, data related to influenza A virus (IAV) detection and isolation, and IAV antibody detection in whistling ducks (Dendrocygna spp. and Thalassornis leuconotus; subfamily Dendrocygninae) are limited. To better evaluate the potential role of whistling ducks in the epidemiology of IAV, we (1) conducted surveillance for IAV from black-bellied whistling ducks (BBWD, Dendrocygnaautumnalis) sampled in coastal Louisiana, USA, during February 2018 and 2019, and (2) reviewed the published literature and Influenza Resource Database (IRD) that reported results of IAV surveillance of whistling ducks. In the prospective study, from 166 BBWD sampled, one H10N7 IAV was isolated (0.6% prevalence), and overall blocking enzyme-linked immunosorbent assay (bELISA) antibody seroprevalence was 10%. The literature review included publications and data in the IRD from 1984 to 2020 that reported results from nearly 5000 collected samples. For any given collection, the IAV isolation rate never exceeded 5.5%, and seroprevalence estimates ranged from 0 to 42%. Results from our prospective study in Louisiana are consistent with this historic literature; however, although all data consistently demonstrated a low prevalence of infection, the potential role of this species in the epidemiology of IAV should not be totally discounted. In sum, whistling ducks can be infected with IAV, they represent important species on many areas where waterfowl winter, and their distribution across the globe appears to be changing.
Collapse
Affiliation(s)
- Deborah L. Carter
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, The University of Georgia, 589 D. W. Brooks Dr., Athens, GA 30602, USA; (D.L.C.); (D.E.S.)
| | - Paul Link
- Louisiana Department of Wildlife and Fisheries, 2000 Quail Drive, Room 436, Baton Rouge, LA 70808, USA;
| | - Gene Tan
- J. Craig Venter Institute, 4120 Capricorn Lane, La Jolla, CA 92037, USA;
- Division of Infectious Diseases, Department of Medicine, University of California, La Jolla, San Diego, CA 92037, USA
| | - David E. Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, The University of Georgia, 589 D. W. Brooks Dr., Athens, GA 30602, USA; (D.L.C.); (D.E.S.)
| | - Rebecca L. Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, The University of Georgia, 589 D. W. Brooks Dr., Athens, GA 30602, USA; (D.L.C.); (D.E.S.)
- Correspondence:
| |
Collapse
|
14
|
Young KT, Lahmers KK, Sellers HS, Stallknecht DE, Poulson RL, Saliki JT, Tompkins SM, Padykula I, Siepker C, Howerth EW, Todd M, Stanton JB. Randomly primed, strand-switching, MinION-based sequencing for the detection and characterization of cultured RNA viruses. J Vet Diagn Invest 2020; 33:202-215. [PMID: 33357075 DOI: 10.1177/1040638720981019] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
RNA viruses rapidly mutate, which can result in increased virulence, increased escape from vaccine protection, and false-negative detection results. Targeted detection methods have a limited ability to detect unknown viruses and often provide insufficient data to detect coinfections or identify antigenic variants. Random, deep sequencing is a method that can more fully detect and characterize RNA viruses and is often coupled with molecular techniques or culture methods for viral enrichment. We tested viral culture coupled with third-generation sequencing for the ability to detect and characterize RNA viruses. Cultures of bovine viral diarrhea virus, canine distemper virus (CDV), epizootic hemorrhagic disease virus, infectious bronchitis virus, 2 influenza A viruses, and porcine respiratory and reproductive syndrome virus were sequenced on the MinION platform using a random, reverse primer in a strand-switching reaction, coupled with PCR-based barcoding. Reads were taxonomically classified and used for reference-based sequence building using a stock personal computer. This method accurately detected and identified complete coding sequence genomes with a minimum of 20× coverage depth for all 7 viruses, including a sample containing 2 viruses. Each lineage-typing region had at least 26× coverage depth for all viruses. Furthermore, analyzing the CDV sample through a pipeline devoid of CDV reference sequences modeled the ability of this protocol to detect unknown viruses. Our results show the ability of this technique to detect and characterize dsRNA, negative- and positive-sense ssRNA, and nonsegmented and segmented RNA viruses.
Collapse
Affiliation(s)
- Kelsey T Young
- Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, GA
| | - Kevin K Lahmers
- Department of Biomedical Sciences & Pathobiology, VA-MD College of Veterinary Medicine, Virginia Tech University, Blacksburg, VA
| | - Holly S Sellers
- Poultry Diagnostic and Research Center, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA
| | - Jerry T Saliki
- Athens Veterinary Diagnostic Laboratory, College of Veterinary Medicine, University of Georgia, Athens, GA
| | - Stephen Mark Tompkins
- Center for Vaccines and Immunology, Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA
| | - Ian Padykula
- Center for Vaccines and Immunology, Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA
| | - Chris Siepker
- Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, GA
| | - Elizabeth W Howerth
- Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, GA
| | - Michelle Todd
- Department of Biomedical Sciences & Pathobiology, VA-MD College of Veterinary Medicine, Virginia Tech University, Blacksburg, VA
| | - James B Stanton
- Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, GA
| |
Collapse
|
15
|
Ramey AM, Reeves AB, Drexler JZ, Ackerman JT, De La Cruz S, Lang AS, Leyson C, Link P, Prosser DJ, Robertson GJ, Wight J, Youk S, Spackman E, Pantin-Jackwood M, Poulson RL, Stallknecht DE. Influenza A viruses remain infectious for more than seven months in northern wetlands of North America. Proc Biol Sci 2020; 287:20201680. [PMID: 32901574 DOI: 10.1098/rspb.2020.1680] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
In this investigation, we used a combination of field- and laboratory-based approaches to assess if influenza A viruses (IAVs) shed by ducks could remain viable for extended periods in surface water within three wetland complexes of North America. In a field experiment, replicate filtered surface water samples inoculated with duck swabs were tested for IAVs upon collection and again after an overwintering period of approximately 6-7 months. Numerous IAVs were molecularly detected and isolated from these samples, including replicates maintained at wetland field sites in Alaska and Minnesota for 181-229 days. In a parallel laboratory experiment, we attempted to culture IAVs from filtered surface water samples inoculated with duck swabs from Minnesota each month during September 2018-April 2019 and found monthly declines in viral viability. In an experimental challenge study, we found that IAVs maintained in filtered surface water within wetlands of Alaska and Minnesota for 214 and 226 days, respectively, were infectious in a mallard model. Collectively, our results support surface waters of northern wetlands as a biologically important medium in which IAVs may be both transmitted and maintained, potentially serving as an environmental reservoir for infectious IAVs during the overwintering period of migratory birds.
Collapse
Affiliation(s)
- Andrew M Ramey
- US Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA
| | - Andrew B Reeves
- US Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA
| | - Judith Z Drexler
- US Geological Survey, California Water Science Center, 6000 J Street, Placer Hall, Sacramento, CA 95819, USA
| | - Joshua T Ackerman
- US Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA 95620, USA
| | - Susan De La Cruz
- US Geological Survey, Western Ecological Research Center, San Francisco Bay Estuary Field Station, 350 N Akron Road, Building 19, Moffett Field, CA 94035, USA
| | - Andrew S Lang
- Department of Biology, Memorial University of Newfoundland, 232 Elizabeth Avenue, St John's, Newfoundland, A1B 3X9, Canada
| | - Christina Leyson
- Exotic and Emerging Avian Viral Diseases Research Unit, US National Poultry Research Center, US Department of Agriculture, Agricultural Research Service, Athens, Georgia, USA
| | - Paul Link
- Louisiana Department of Wildlife and Fisheries, 2000 Quail Drive, Room 436, Baton Rouge, LA 70808, USA
| | - Diann J Prosser
- US Geological Survey Patuxent Wildlife Research Center, 12100 Beech Forest Road, Laurel, MD 20708, USA
| | - Gregory J Robertson
- Environment and Climate Change Canada, 6 Bruce Street, Mount Pearl, Newfoundland, A1N 4T3, Canada
| | - Jordan Wight
- Department of Biology, Memorial University of Newfoundland, 232 Elizabeth Avenue, St John's, Newfoundland, A1B 3X9, Canada
| | - Sungsu Youk
- Exotic and Emerging Avian Viral Diseases Research Unit, US National Poultry Research Center, US Department of Agriculture, Agricultural Research Service, Athens, Georgia, USA
| | - Erica Spackman
- Exotic and Emerging Avian Viral Diseases Research Unit, US National Poultry Research Center, US Department of Agriculture, Agricultural Research Service, Athens, Georgia, USA
| | - Mary Pantin-Jackwood
- Exotic and Emerging Avian Viral Diseases Research Unit, US National Poultry Research Center, US Department of Agriculture, Agricultural Research Service, Athens, Georgia, USA
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA
| |
Collapse
|
16
|
Christensen SA, Ruder MG, Williams DM, Porter WF, Stallknecht DE. The role of drought as a determinant of hemorrhagic disease in the eastern United States. Glob Chang Biol 2020; 26:3799-3808. [PMID: 32227543 DOI: 10.1111/gcb.15095] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2019] [Accepted: 02/20/2020] [Indexed: 06/10/2023]
Abstract
Bluetongue virus and epizootic hemorrhagic disease (HD) virus are globally distributed, vector-borne viruses that infect and cause disease in domestic and wild ruminant species. The forces driving increases in resulting HD may be linked to weather conditions and increasing severity has been noted in northerly latitudes. We evaluated the role of drought severity in both space and time on changes in HD reports across the eastern United States for a recent 15 year period. The objectives of this study were to: (a) develop a spatiotemporal model to evaluate if drought severity explains changing patterns of HD presence; and (b) determine whether this potential risk factor varies in importance over the present range of HD in the eastern United States. Historic data (2000-2014) from an annual HD presence-absence survey conducted by the Southeastern Cooperative Wildlife Disease Study and from the United States Drought Monitor were used for this analysis. For every county in 23 states and for each of 15 years, data were based on reported drought status for August, wetland cover, the physiographic region, and the status of HD in the previous year. We used a generalized linear mixed model to explain HD presence and evaluated spatiotemporal predictors across the region. We found that drought severity was a significant predictor of HD presence and the significance of this relationship was dependent on latitude. In more northerly latitudes, where immunological naivety is most likely, we demonstrated the increasing strength of drought severity as a determinant of reported HD and established the importance of variation in drought severity as a risk factor over the present range of HD in the eastern United States. Our research provides spatially explicit evidence for the link between climate forces and emerging disease patterns across latitude for a globally distributed disease.
Collapse
Affiliation(s)
- Sonja A Christensen
- Department of Fisheries and Wildlife, Michigan State University, East Lansing, MI, USA
| | - Mark G Ruder
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, The University of Georgia, Athens, GA, USA
| | - David M Williams
- Department of Fisheries and Wildlife, Michigan State University, East Lansing, MI, USA
| | - William F Porter
- Department of Fisheries and Wildlife, Michigan State University, East Lansing, MI, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, The University of Georgia, Athens, GA, USA
| |
Collapse
|
17
|
Verhagen JH, Poen M, Stallknecht DE, van der Vliet S, Lexmond P, Sreevatsan S, Poulson RL, Fouchier RAM, Lebarbenchon C. Phylogeography and Antigenic Diversity of Low-Pathogenic Avian Influenza H13 and H16 Viruses. J Virol 2020; 94:e00537-20. [PMID: 32321814 PMCID: PMC7307148 DOI: 10.1128/jvi.00537-20] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Accepted: 04/13/2020] [Indexed: 11/20/2022] Open
Abstract
Low-pathogenic avian influenza viruses (LPAIVs) are genetically highly variable and have diversified into multiple evolutionary lineages that are primarily associated with wild-bird reservoirs. Antigenic variation has been described for mammalian influenza viruses and for highly pathogenic avian influenza viruses that circulate in poultry, but much less is known about antigenic variation of LPAIVs. In this study, we focused on H13 and H16 LPAIVs that circulate globally in gulls. We investigated the evolutionary history and intercontinental gene flow based on the hemagglutinin (HA) gene and used representative viruses from genetically distinct lineages to determine their antigenic properties by hemagglutination inhibition assays. For H13, at least three distinct genetic clades were evident, while for H16, at least two distinct genetic clades were evident. Twenty and ten events of intercontinental gene flow were identified for H13 and H16 viruses, respectively. At least two antigenic variants of H13 and at least one antigenic variant of H16 were identified. Amino acid positions in the HA protein that may be involved in the antigenic variation were inferred, and some of the positions were located near the receptor binding site of the HA protein, as they are in the HA protein of mammalian influenza A viruses. These findings suggest independent circulation of H13 and H16 subtypes in gull populations, as antigenic patterns do not overlap, and they contribute to the understanding of the genetic and antigenic variation of LPAIVs naturally circulating in wild birds.IMPORTANCE Wild birds play a major role in the epidemiology of low-pathogenic avian influenza viruses (LPAIVs), which are occasionally transmitted-directly or indirectly-from them to other species, including domestic animals, wild mammals, and humans, where they can cause subclinical to fatal disease. Despite a multitude of genetic studies, the antigenic variation of LPAIVs in wild birds is poorly understood. Here, we investigated the evolutionary history, intercontinental gene flow, and antigenic variation among H13 and H16 LPAIVs. The circulation of subtypes H13 and H16 seems to be maintained by a narrower host range, in particular gulls, than the majority of LPAIV subtypes and may therefore serve as a model for evolution and epidemiology of H1 to H12 LPAIVs in wild birds. The findings suggest that H13 and H16 LPAIVs circulate independently of each other and emphasize the need to investigate within-clade antigenic variation of LPAIVs in wild birds.
Collapse
Affiliation(s)
- Josanne H Verhagen
- Erasmus Medical Center, Department of Viroscience, Rotterdam, The Netherlands
- Linnaeus University, Department of Biology and Environmental Science, Kalmar, Sweden
| | - Marjolein Poen
- Erasmus Medical Center, Department of Viroscience, Rotterdam, The Netherlands
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, University of Georgia, Athens, Georgia, USA
| | | | - Pascal Lexmond
- Erasmus Medical Center, Department of Viroscience, Rotterdam, The Netherlands
| | - Srinand Sreevatsan
- Michigan State University, College of Veterinary Medicine, Department of Pathobiology and Diagnostic Investigation, East Lansing, Michigan, USA
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, University of Georgia, Athens, Georgia, USA
| | - Ron A M Fouchier
- Erasmus Medical Center, Department of Viroscience, Rotterdam, The Netherlands
| | - Camille Lebarbenchon
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, University of Georgia, Athens, Georgia, USA
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Sainte-Clotilde, La Réunion, France
| |
Collapse
|
18
|
Jia B, Colling A, Stallknecht DE, Blehert D, Bingham J, Crossley B, Eagles D, Gardner IA. Validation of laboratory tests for infectious diseases in wild mammals: review and recommendations. J Vet Diagn Invest 2020; 32:776-792. [PMID: 32468923 DOI: 10.1177/1040638720920346] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
Evaluation of the diagnostic sensitivity (DSe) and specificity (DSp) of tests for infectious diseases in wild animals is challenging, and some of the limitations may affect compliance with the OIE-recommended test validation pathway. We conducted a methodologic review of test validation studies for OIE-listed diseases in wild mammals published between 2008 and 2017 and focused on study design, statistical analysis, and reporting of results. Most published papers addressed Mycobacterium bovis infection in one or more wildlife species. Our review revealed limitations or missing information about sampled animals, identification criteria for positive and negative samples (case definition), representativeness of source and target populations, and species in the study, as well as information identifying animals sampled for calculations of DSe and DSp as naturally infected captive, free-ranging, or experimentally challenged animals. The deficiencies may have reflected omissions in reporting rather than design flaws, although lack of random sampling might have induced bias in estimates of DSe and DSp. We used case studies of validation of tests for hemorrhagic diseases in deer and white-nose syndrome in hibernating bats to demonstrate approaches for validation when new pathogen serotypes or genotypes are detected and diagnostic algorithms are changed, and how purposes of tests evolve together with the evolution of the pathogen after identification. We describe potential benefits of experimental challenge studies for obtaining DSe and DSp estimates, methods to maintain sample integrity, and Bayesian latent class models for statistical analysis. We make recommendations for improvements in future studies of detection test accuracy in wild mammals.
Collapse
Affiliation(s)
- Beibei Jia
- Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, Canada (Jia, Gardner).,CSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia (Colling, Bingham, Eagles).,Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA (Stallknecht).,U.S. Geological Survey, National Wildlife Health Center, Madison, WI (Blehert).,California Animal Health and Food Safety Laboratory, University of California-Davis, Davis, CA (Crossley)
| | - Axel Colling
- Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, Canada (Jia, Gardner).,CSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia (Colling, Bingham, Eagles).,Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA (Stallknecht).,U.S. Geological Survey, National Wildlife Health Center, Madison, WI (Blehert).,California Animal Health and Food Safety Laboratory, University of California-Davis, Davis, CA (Crossley)
| | - David E Stallknecht
- Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, Canada (Jia, Gardner).,CSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia (Colling, Bingham, Eagles).,Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA (Stallknecht).,U.S. Geological Survey, National Wildlife Health Center, Madison, WI (Blehert).,California Animal Health and Food Safety Laboratory, University of California-Davis, Davis, CA (Crossley)
| | - David Blehert
- Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, Canada (Jia, Gardner).,CSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia (Colling, Bingham, Eagles).,Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA (Stallknecht).,U.S. Geological Survey, National Wildlife Health Center, Madison, WI (Blehert).,California Animal Health and Food Safety Laboratory, University of California-Davis, Davis, CA (Crossley)
| | - John Bingham
- Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, Canada (Jia, Gardner).,CSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia (Colling, Bingham, Eagles).,Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA (Stallknecht).,U.S. Geological Survey, National Wildlife Health Center, Madison, WI (Blehert).,California Animal Health and Food Safety Laboratory, University of California-Davis, Davis, CA (Crossley)
| | - Beate Crossley
- Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, Canada (Jia, Gardner).,CSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia (Colling, Bingham, Eagles).,Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA (Stallknecht).,U.S. Geological Survey, National Wildlife Health Center, Madison, WI (Blehert).,California Animal Health and Food Safety Laboratory, University of California-Davis, Davis, CA (Crossley)
| | - Debbie Eagles
- Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, Canada (Jia, Gardner).,CSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia (Colling, Bingham, Eagles).,Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA (Stallknecht).,U.S. Geological Survey, National Wildlife Health Center, Madison, WI (Blehert).,California Animal Health and Food Safety Laboratory, University of California-Davis, Davis, CA (Crossley)
| | - Ian A Gardner
- Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, Canada (Jia, Gardner).,CSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia (Colling, Bingham, Eagles).,Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA (Stallknecht).,U.S. Geological Survey, National Wildlife Health Center, Madison, WI (Blehert).,California Animal Health and Food Safety Laboratory, University of California-Davis, Davis, CA (Crossley)
| |
Collapse
|
19
|
Taylor KY, Ruder MG, Mead DG, Stallknecht DE. An Embryonated Egg Transmission Model for Epizootic Hemorrhagic Disease Virus. Vector Borne Zoonotic Dis 2020; 20:728-730. [PMID: 32423316 DOI: 10.1089/vbz.2019.2590] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Epizootic hemorrhagic disease virus (EHDV) is a vector-borne orbivirus of ruminants; in North America there are three serotypes (EHDV-1, -2, and -6) and these primarily affect white-tailed deer (Odocoilus virginianus). EHDV is vectored by biting midges, Culicoides spp. Embryonated chicken eggs (ECE) have recently been used as an experimental host to investigate the vector competence of Australian Culicoides spp. for bluetongue serotype virus 1 and 23. In this study, we evaluated the use of the ECE model to determine its applicability for evaluating vector competence related to transmission of North American EHDV serotypes. We demonstrated that all three North American EHDV serotypes were able to replicate in ECEs and be transmitted from infected ECEs to Culicoides sonorensis Wirth & Jones. In addition, we were able to complete the transmission cycle from infected C. sonorensis to uninfected ECEs for EHDV-1 and -2.
Collapse
Affiliation(s)
- Kishana Y Taylor
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA
| | - Mark G Ruder
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA
| | - Daniel G Mead
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA
| |
Collapse
|
20
|
Segovia KM, França MS, Bahnson CS, Latorre-Margalef N, Stallknecht DE. Are Microneutralization and Hemagglutination Inhibition Assays Comparable? Serological Results from Influenza Experimentally Infected Mallard Ducks. Avian Dis 2020; 63:138-144. [PMID: 31131570 DOI: 10.1637/11886-042718-reg.1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Accepted: 08/04/2018] [Indexed: 11/05/2022]
Abstract
The hemagglutination inhibition (HI) assay is commonly used to assess the humoral immune response against influenza A viruses (IAV). However, the microneutralization (MN) assay has been reported to have higher sensitivity when testing sera from humans and other species. Our objective was to determine the agreement between MN and HI assays and compare the proportion of positive samples detected by both methods in sera of mallards primary infected with the A/mallard/MN/Sg-000169/ 2007 (H3N8) virus and subsequently inoculated with homosubtypic or heterosubtypic IAV. Overall, we found poor to fair agreement (prevalence-adjusted bias-adjusted kappa [PABAK], 0.03-0.35) between MN and HI assays in serum samples collected 2 weeks after H3N8 inoculation; the observed agreement increased to moderate or substantial in samples collected 4 to 5 weeks postinoculation (WPI) (PABAK, 0.52-0.75). The MN assay detected a higher proportion of positive samples compared with HI assays in serum samples collected 2 WPI (P = 0.01). This difference was not observed in samples collected 4 WPI. Also, a boosting effect in MN and HI titers was observed when birds were subsequently inoculated with IAV within the same H3 clade. This effect was not observed when birds were challenged with viruses that belong to a different HA clade. In summary, the agreement between assays varies depending on the postinfection sample collection time point and the similarity between the antigens used for the assays. Additionally, subsequent exposure of ducks to homosubtypic or heterosubtypic strains might affect the observed agreement.
Collapse
Affiliation(s)
- Karen M Segovia
- Poultry Diagnostic and Research Center, The University of Georgia, Athens, GA 30602
| | - Monique S França
- Poultry Diagnostic and Research Center, The University of Georgia, Athens, GA 30602
| | - Charlie S Bahnson
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA 30606
| | - Neus Latorre-Margalef
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA 30606.,Department of Biology, Lund University, Lund, Sweden
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA 30606,
| |
Collapse
|
21
|
Hollander LP, Fojtik A, Kienzle-Dean C, Davis-Fields N, Poulson RL, Davis B, Mowry C, Stallknecht DE. Prevalence of Influenza A Viruses in Ducks Sampled in Northwestern Minnesota and Evidence for Predominance of H3N8 and H4N6 Subtypes in Mallards, 2007-2016. Avian Dis 2020; 63:126-130. [PMID: 31131568 DOI: 10.1637/11851-041918-reg.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2018] [Accepted: 07/20/2018] [Indexed: 11/05/2022]
Abstract
Long-term comprehensive studies of avian influenza virus subtypes in ducks not only contribute to understanding variations and patterns of subtype diversity, but also can be important in defining seasonal and temporal risks associated with transmission of potentially highly pathogenic H5 and H7 subtypes to domestic poultry. We analyzed influenza A virus (IAV) surveillance data from dabbling ducks collected at an important migratory stopover site in northwestern Minnesota from 2007-2016 and identified prevalence and subtype diversity throughout this period. In total, 13,228 cloacal and oropharyngeal swabs from waterfowl were tested over the 10-year period; the majority of these waterfowl were mallards sampled from late August through late September (n = 9133). From these, 1768 IAVs were isolated (19.4% mean annual prevalence, ranging from 11.0% in 2007 to 32.8% in 2011), and both hemagglutinin (HA) and neuraminidase were identified for 1588. Although subtype diversity and prevalence varied by year, H3 and H4 HA subtypes predominated in all years, accounting for 65.7% of the observed HA subtype diversity. The mechanisms driving this consistent pattern of subtype diversity and predominance are not understood but may include factors at the host, population, and virus level.
Collapse
Affiliation(s)
- Laura P Hollander
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, School of Veterinary Medicine, University of Georgia, Athens, GA 30602, lholla27@gmailcom
| | - Alinde Fojtik
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, School of Veterinary Medicine, University of Georgia, Athens, GA 30602
| | - Clara Kienzle-Dean
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, School of Veterinary Medicine, University of Georgia, Athens, GA 30602
| | - Nick Davis-Fields
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, School of Veterinary Medicine, University of Georgia, Athens, GA 30602
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, School of Veterinary Medicine, University of Georgia, Athens, GA 30602
| | - Bruce Davis
- Minnesota Department of Natural Resources, Bemidji, MN 56601
| | - Craig Mowry
- United States Fish and Wildlife Service, Agassiz National Wildlife Refuge, Middle River, MN 56737
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, School of Veterinary Medicine, University of Georgia, Athens, GA 30602
| |
Collapse
|
22
|
Reeves AB, Ramey AM, Koch JC, Poulson RL, Stallknecht DE. Field-based method for assessing duration of infectivity for influenza A viruses in the environment. J Virol Methods 2020; 277:113818. [PMID: 31923446 DOI: 10.1016/j.jviromet.2020.113818] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Revised: 01/02/2020] [Accepted: 01/03/2020] [Indexed: 11/25/2022]
Abstract
Understanding influenza A virus (IAV) persistence in wetlands is limited by a paucity of field studies relating to the maintenance of infectivity over time. The duration of IAV infectivity in water has been assessed under variable laboratory conditions, but results are difficult to translate to more complex field conditions. We tested a field-based method to assess the viability of IAVs in an Alaska wetland during fall and winter which incorporated physical and chemical properties of the waterbody in which samples were held. Filtered pond water was inoculated with avian fecal samples collected from the environment, aliquoted into a series of duplicate sealed vials and submerged back in the wetland for up to 132 days (October 2018-March 2019). Sample aliquots were sequentially recovered and tested for IAVs by rRT-PCR and virus isolation. One sample remained rRT-PCR positive for the duration of the study and virus isolation positive for 118 days. The surrounding water temperature was 1°-6 °C with near neutral pH (6.6-7.3) for the duration of the study. This proof of concept study demonstrates a protocol for testing the persistence of infectious IAV naturally shed from waterfowl under ambient environmental conditions.
Collapse
Affiliation(s)
- Andrew B Reeves
- U.S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, Alaska 99508, USA.
| | - Andrew M Ramey
- U.S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, Alaska 99508, USA
| | - Joshua C Koch
- U.S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, Alaska 99508, USA
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, 589 D. W. Brooks Drive, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia 30602, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, 589 D. W. Brooks Drive, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia 30602, USA
| |
Collapse
|
23
|
Bahnson CS, Poulson RL, Hollander LP, Bradley JAC, Stallknecht DE. SUSCEPTIBILITY OF LAUGHING GULLS ( LEUCOPHAEUS ATRICILLA) AND MALLARDS ( ANAS PLATYRHYNCHOS) TO RUDDY TURNSTONE ( ARENARIA INTERPRES MORINELLA) ORIGIN TYPE A INFLUENZA VIRUSES. J Wildl Dis 2020; 56:167-174. [PMID: 31532732 PMCID: PMC9202238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Delaware Bay, US is the only documented location where influenza A virus (IAV) is consistently detected in a shorebird species, the Ruddy Turnstone (RUTU; Arenaria interpres morinella). Although IAV in shorebirds has been well studied at this site for decades, the importance of other species in the avian community as potential sources for the IAVs that infect RUTUs each spring remains unclear. We determined the susceptibility of Mallards (Anas platyrhynchos) and Laughing Gulls (Leucophaeus atricilla), to IAVs isolated from RUTUs in order to gain insight into the potential host range of these viruses. Captive-reared gulls were challenged with RUTU-origin H6N1, H10N7, H11N9, H12N4, and H13N6 IAV, as well as Mallard-origin H6N1 and H11N9. We challenged captive-reared Mallards with the same viruses, except for H13N6. At a biologically plausible challenge dose (104 50% embryo infective doses/0.1 mL), one of five gulls challenged with both H6N1 IAVs shed virus. The remaining gulls were resistant to infection with all viruses. In contrast, all Mallards were infected and shed virus. The H12N4 Mallard challenge group was an exception with no birds infected. These results indicated that Mallards are permissive to infection with viruses originating from a shorebird host and that interspecies transmission could occur. In contrast, host adaptation of IAVs to RUTUs may compromise their ability to be transmitted back to gulls.
Collapse
Affiliation(s)
- Charlie S. Bahnson
- Southeastern Cooperative Wildlife Disease Study, 589 D. W. Brooks Drive, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, Georgia 30602, USA
| | - Rebecca L. Poulson
- Southeastern Cooperative Wildlife Disease Study, 589 D. W. Brooks Drive, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, Georgia 30602, USA
| | - Laura P. Hollander
- Southeastern Cooperative Wildlife Disease Study, 589 D. W. Brooks Drive, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, Georgia 30602, USA
| | - Jo A. Crum Bradley
- Southeastern Cooperative Wildlife Disease Study, 589 D. W. Brooks Drive, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, Georgia 30602, USA
| | - David E. Stallknecht
- Southeastern Cooperative Wildlife Disease Study, 589 D. W. Brooks Drive, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, Georgia 30602, USA
| |
Collapse
|
24
|
Ramey AM, Uher-Koch BD, Reeves AB, Schmutz JA, Poulson RL, Stallknecht DE. Emperor geese (Anser canagicus) are exposed to a diversity of influenza A viruses, are infected during the non-breeding period and contribute to intercontinental viral dispersal. Transbound Emerg Dis 2019; 66:1958-1970. [PMID: 31077545 DOI: 10.1111/tbed.13226] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Revised: 05/06/2019] [Accepted: 05/07/2019] [Indexed: 11/27/2022]
Abstract
Emperor geese (Anser canagicus) are endemic to coastal areas within Beringia and have previously been found to have antibodies to or to be infected with influenza A viruses (IAVs) in Alaska. In this study, we use virological, serological and tracking data to further elucidate the role of emperor geese in the ecology of IAVs in Beringia during the non-breeding period. Specifically, we assess evidence for: (a) active IAV infection during spring staging, autumn staging and wintering periods; (b) infection with novel Eurasian-origin or interhemispheric reassortant viruses; (c) contemporary movement of geese between East Asia and North America; (d) previous exposure to viruses of 14 haemagglutinin subtypes, including Eurasian lineage highly pathogenic (HP) H5 IAVs; and (e) subtype-specific antibody seroconversion and seroreversion. Emperor geese were found to shed IAVs, including interhemispheric reassortant viruses, throughout the non-breeding period; migrate between Alaska and the Russian Far East prior to and following remigial moult; have antibodies reactive to a diversity of IAVs including, in a few instances, Eurasian lineage HP H5 IAVs; and exhibit relatively broad and stable patterns of population immunity among breeding females. Results of this study suggest that emperor geese may play an important role in the maintenance and dispersal of IAVs within Beringia during the non-breeding period and provide information that may be used to further optimize surveillance activities focused on the early detection of Eurasian-origin IAVs in North America.
Collapse
Affiliation(s)
- Andrew M Ramey
- U.S. Geological Survey Alaska Science Center, Anchorage, Alaska
| | | | - Andrew B Reeves
- U.S. Geological Survey Alaska Science Center, Anchorage, Alaska
| | - Joel A Schmutz
- U.S. Geological Survey Alaska Science Center, Anchorage, Alaska
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia
| |
Collapse
|
25
|
Ramey AM, Reeves AB, Donnelly T, Poulson RL, Stallknecht DE. Introduction of Eurasian-Origin Influenza A(H8N4) Virus into North America by Migratory Birds. Emerg Infect Dis 2019; 24:1950-1953. [PMID: 30226185 PMCID: PMC6154152 DOI: 10.3201/eid2410.180447] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
We identified a Eurasian-origin influenza A(H8N4) virus in North America by sampling wild birds in western Alaska, USA. Evidence for repeated introductions of influenza A viruses into North America by migratory birds suggests that intercontinental dispersal might not be exceedingly rare and that our understanding of viral establishment is incomplete.
Collapse
|
26
|
Schirtzinger EE, Jasperson DC, Ruder MG, Stallknecht DE, Chase CCL, Johnson DJ, Ostlund EN, Wilson WC. Evaluation of 2012 US EHDV-2 outbreak isolates for genetic determinants of cattle infection. J Gen Virol 2019; 100:556-567. [PMID: 30869580 DOI: 10.1099/jgv.0.001221] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Following a summer of severe drought and abnormally high temperatures, a major outbreak of EHDV occurred during 2012 in the USA. Although EHDV-1, -2 and -6 were isolated, EHDV-2 was the predominant virus serotype detected during the outbreak. In addition to large losses of white-tailed deer, the Midwest and northern Plains saw a significant amount of clinical disease in cattle. Phylogenetic analyses and sequence comparisons of newly sequenced whole genomes of 2012 EHDV-2 cattle isolates demonstrated that eight of ten EHDV-2 genomic segments show no genetic changes that separate the cattle outbreak sequences from other EHDV-2 isolates. Two segments, VP2 and VP6, did show several unique genetic changes specific to the 2012 cattle outbreak isolates, although the impact of the genetic changes on viral fitness is unknown. The placement of isolates from 2007 and 2011 as sister group to the outbreak isolates, and the similarity between cattle and deer isolates, point to environmental variables as having a greater influence on the severity of the 2012 EHDV outbreak than viral genetic changes.
Collapse
Affiliation(s)
- Erin E Schirtzinger
- 1United States Department of Agriculture, Agricultural Research Service, Arthropod-borne Animal Diseases Research Unit, 1515 College Avenue, Manhattan, KS 66502, USA
| | - Dane C Jasperson
- 1United States Department of Agriculture, Agricultural Research Service, Arthropod-borne Animal Diseases Research Unit, 1515 College Avenue, Manhattan, KS 66502, USA
| | - Mark G Ruder
- 1United States Department of Agriculture, Agricultural Research Service, Arthropod-borne Animal Diseases Research Unit, 1515 College Avenue, Manhattan, KS 66502, USA
- 2Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, 501 D.W. Brooks Drive, Athens, GA 30602, USA
| | - David E Stallknecht
- 2Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, 501 D.W. Brooks Drive, Athens, GA 30602, USA
| | - Christopher C L Chase
- 3Department of Veterinary and Biomedical Sciences, South Dakota State University, SAR 125, Box 2175, Brookings, SD 57007, USA
| | - Donna J Johnson
- 4United States Department of Agriculture, Animal-Plant Health Inspection Service, National Veterinary Service Laboratories, Diagnostic Virology Laboratory, PO Box 844, Ames, IA 50010, USA
| | - Eileen N Ostlund
- 4United States Department of Agriculture, Animal-Plant Health Inspection Service, National Veterinary Service Laboratories, Diagnostic Virology Laboratory, PO Box 844, Ames, IA 50010, USA
| | - William C Wilson
- 1United States Department of Agriculture, Agricultural Research Service, Arthropod-borne Animal Diseases Research Unit, 1515 College Avenue, Manhattan, KS 66502, USA
| |
Collapse
|
27
|
Reeves AB, Hall JS, Poulson RL, Donnelly T, Stallknecht DE, Ramey AM. Influenza A virus recovery, diversity, and intercontinental exchange: A multi-year assessment of wild bird sampling at Izembek National Wildlife Refuge, Alaska. PLoS One 2018; 13:e0195327. [PMID: 29621333 PMCID: PMC5950690 DOI: 10.1371/journal.pone.0195327] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Accepted: 03/20/2018] [Indexed: 11/18/2022] Open
Abstract
Western Alaska is a potential point-of-entry for foreign-origin influenza A viruses (IAVs) into North America via migratory birds. We sampled waterfowl and gulls for IAVs at Izembek National Wildlife Refuge (NWR) in western Alaska, USA, during late summer and autumn months of 2011-2015, to evaluate the abundance and diversity of viruses at this site. We collected 4842 samples across five years from 25 species of wild birds resulting in the recovery, isolation, and sequencing of 172 IAVs. With the intent of optimizing sampling efficiencies, we used information derived from this multi-year effort to: 1) evaluate from which species we consistently recover viruses, 2) describe viral subtypes of isolates by host species and year, 3) characterize viral gene segment sequence diversity with respect to host species, and assess potential differences in the viral lineages among the host groups, and 4) examine how evidence of intercontinental exchange of IAVs relates to host species. We consistently recovered viruses from dabbling ducks (Anas spp.), emperor geese (Chen canagica) and glaucous-winged gulls (Larus glaucescens). There was little evidence for differences in viral subtypes and diversity from different waterfowl hosts, however subtypes and viral diversity varied between waterfowl host groups and glaucous-winged gulls. Furthermore, higher proportions of viral sequences from northern pintails (Anas acuta), emperor geese and glaucous-winged gulls were grouped in phylogenetic clades that included IAV sequences originating from wild birds sampled in Asia as compared to non-pintail dabbling ducks, a difference that may be related to intercontinental migratory tendencies of host species. Our summary of research and surveillance efforts at Izembek NWR will assist in future prioritization of which hosts to sample and swab types to collect in Alaska and elsewhere in order to maximize isolate recovery, subtype and sequence diversity for resultant viruses, and detection of evidence for intercontinental viral exchange.
Collapse
Affiliation(s)
- Andrew B. Reeves
- United States Geological Survey Alaska Science Center, Anchorage, Alaska, United States of America
- * E-mail: (ABR); (AMR)
| | - Jeffrey S. Hall
- United States Geological Survey National Wildlife Health Center, Madison, Wisconsin, United States of America
| | - Rebecca L. Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America
| | - Tyrone Donnelly
- United States Geological Survey Alaska Science Center, Anchorage, Alaska, United States of America
| | - David E. Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America
| | - Andrew M. Ramey
- United States Geological Survey Alaska Science Center, Anchorage, Alaska, United States of America
- * E-mail: (ABR); (AMR)
| |
Collapse
|
28
|
Ramey AM, DeLiberto TJ, Berhane Y, Swayne DE, Stallknecht DE. Lessons learned from research and surveillance directed at highly pathogenic influenza A viruses in wild birds inhabiting North America. Virology 2018; 518:55-63. [PMID: 29453059 DOI: 10.1016/j.virol.2018.02.002] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2017] [Revised: 01/29/2018] [Accepted: 02/02/2018] [Indexed: 11/19/2022]
Abstract
Following detections of highly pathogenic (HP) influenza A viruses (IAVs) in wild birds inhabiting East Asia after the turn of the millennium, the intensity of sampling of wild birds for IAVs increased throughout much of North America. The objectives for many research and surveillance efforts were directed towards detecting Eurasian origin HP IAVs and understanding the potential of such viruses to be maintained and dispersed by wild birds. In this review, we highlight five important lessons learned from research and surveillance directed at HP IAVs in wild birds inhabiting North America: (1) Wild birds may disperse IAVs between North America and adjacent regions via migration, (2) HP IAVs can be introduced to wild birds in North America, (3) HP IAVs may cross the wild bird-poultry interface in North America, (4) The probability of encountering and detecting a specific virus may be low, and (5) Population immunity of wild birds may influence HP IAV outbreaks in North America. We review empirical support derived from research and surveillance efforts for each lesson learned and, furthermore, identify implications for future surveillance efforts, biosecurity, and population health. We conclude our review by identifying five additional areas in which we think future mechanistic research relative to IAVs in wild birds in North America are likely to lead to other important lessons learned in the years ahead.
Collapse
Affiliation(s)
- Andrew M Ramey
- US Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA.
| | - Thomas J DeLiberto
- National Wildlife Disease Program, Wildlife Services, Animal and Plant Health Inspection Service, US Department of Agriculture, Fort Collins, CO 80521, USA
| | - Yohannes Berhane
- Canadian Food Inspection Agency, National Centre for Foreign Animal Disease, Winnipeg, Manitoba, Canada R3E 3M4; Department of Animal Science, University of Manitoba, Winnipeg, Canada
| | - David E Swayne
- Exotic and Emerging Avian Viral Diseases Research Unit, Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, GA, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA
| |
Collapse
|
29
|
Poulson RL, Luttrell PM, Slusher MJ, Wilcox BR, Niles LJ, Dey AD, Berghaus RD, Krauss S, Webster RG, Stallknecht DE. Influenza A virus: sampling of the unique shorebird habitat at Delaware Bay, USA. R Soc Open Sci 2017; 4:171420. [PMID: 29291124 PMCID: PMC5717699 DOI: 10.1098/rsos.171420] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Accepted: 10/17/2017] [Indexed: 05/31/2023]
Abstract
Delaware (DE) Bay, in the northeastern USA, has long been recognized as a hotspot for avian influenza A virus (IAV); every spring, this coastal region serves as a brief stopover site for thousands of long-distance migrating shorebirds, en route to breeding grounds in the Arctic. During these stopovers, IAV has been consistently recovered from ruddy turnstones (Arenaria interpres) that are likely to become infected as they feed by probing sand and cobble in search of food. In May 2010-2012, we successfully isolated 19 IAV from environmental samples (sand, n = 18; horseshoe crab eggs, n = 1) obtained from DE Bay sites. Two of these viruses were subjected to laboratory conditions similar to those in the DE Bay spring-time environment, and remained infectious for 7 days. Here, through the recovery of IAV from environmental samples, temperature monitoring at and below the sand surface and simulated laboratory trials, we provide evidence that the beach environment may enable localized transmission and short-term maintenance of IAV in this unique ecosystem.
Collapse
Affiliation(s)
- Rebecca L. Poulson
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, 589 D. W. Brooks Drive, Athens, GA 30602, USA
| | - Page M. Luttrell
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, 589 D. W. Brooks Drive, Athens, GA 30602, USA
| | - Morgan J. Slusher
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, 589 D. W. Brooks Drive, Athens, GA 30602, USA
| | - Benjamin R. Wilcox
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, 589 D. W. Brooks Drive, Athens, GA 30602, USA
| | - Lawrence J. Niles
- Conserve Wildlife Foundation of New Jersey, PO Box 420, Trenton, NJ 08609, USA
| | - Amanda D. Dey
- Endangered and Nongame Species Program, New Jersey Division of Fish and Wildlife, 8747 Ferry Road, Millville, NJ 08332, USA
| | - Roy D. Berghaus
- College of Veterinary Medicine, Department of Population Health, The University of Georgia, 2200 College Station Road, Athens, GA 30602, USA
| | - Scott Krauss
- Department of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Robert G. Webster
- Department of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - David E. Stallknecht
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, 589 D. W. Brooks Drive, Athens, GA 30602, USA
| |
Collapse
|
30
|
Poulson RL, Luttrell PM, Slusher MJ, Wilcox BR, Niles LJ, Dey AD, Berghaus RD, Krauss S, Webster RG, Stallknecht DE. Influenza A virus: sampling of the unique shorebird habitat at Delaware Bay, USA. R Soc Open Sci 2017. [PMID: 29291124 DOI: 10.5061/dryad.69v95] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Delaware (DE) Bay, in the northeastern USA, has long been recognized as a hotspot for avian influenza A virus (IAV); every spring, this coastal region serves as a brief stopover site for thousands of long-distance migrating shorebirds, en route to breeding grounds in the Arctic. During these stopovers, IAV has been consistently recovered from ruddy turnstones (Arenaria interpres) that are likely to become infected as they feed by probing sand and cobble in search of food. In May 2010-2012, we successfully isolated 19 IAV from environmental samples (sand, n = 18; horseshoe crab eggs, n = 1) obtained from DE Bay sites. Two of these viruses were subjected to laboratory conditions similar to those in the DE Bay spring-time environment, and remained infectious for 7 days. Here, through the recovery of IAV from environmental samples, temperature monitoring at and below the sand surface and simulated laboratory trials, we provide evidence that the beach environment may enable localized transmission and short-term maintenance of IAV in this unique ecosystem.
Collapse
Affiliation(s)
- Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, 589 D. W. Brooks Drive, Athens, GA 30602, USA
| | - Page M Luttrell
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, 589 D. W. Brooks Drive, Athens, GA 30602, USA
| | - Morgan J Slusher
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, 589 D. W. Brooks Drive, Athens, GA 30602, USA
| | - Benjamin R Wilcox
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, 589 D. W. Brooks Drive, Athens, GA 30602, USA
| | - Lawrence J Niles
- Conserve Wildlife Foundation of New Jersey, PO Box 420, Trenton, NJ 08609, USA
| | - Amanda D Dey
- Endangered and Nongame Species Program, New Jersey Division of Fish and Wildlife, 8747 Ferry Road, Millville, NJ 08332, USA
| | - Roy D Berghaus
- College of Veterinary Medicine, Department of Population Health, The University of Georgia, 2200 College Station Road, Athens, GA 30602, USA
| | - Scott Krauss
- Department of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Robert G Webster
- Department of Infectious Diseases, St Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, 589 D. W. Brooks Drive, Athens, GA 30602, USA
| |
Collapse
|
31
|
Spivey TJ, Lindberg MS, Meixell BW, Smith KR, Puryear WB, Davis KR, Runstadler JA, Stallknecht DE, Ramey AM. Maintenance of influenza A viruses and antibody response in mallards (Anas platyrhynchos) sampled during the non-breeding season in Alaska. PLoS One 2017; 12:e0183505. [PMID: 28837606 PMCID: PMC5570339 DOI: 10.1371/journal.pone.0183505] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2017] [Accepted: 08/04/2017] [Indexed: 11/25/2022] Open
Abstract
Prevalence of influenza A virus (IAV) infections in northern-breeding waterfowl has previously been reported to reach an annual peak during late summer or autumn; however, little is known about IAV infection dynamics in waterfowl populations persisting at high-latitude regions such as Alaska, during winter. We captured mallards (Anas platyrhynchos) throughout the non-breeding season (August–April) of 2012–2015 in Fairbanks and Anchorage, the two largest cities in Alaska, to assess patterns of IAV infection and antibody production using molecular methods and a standard serologic assay. In addition, we used virus isolation, genetic sequencing, and a virus microneutralization assay to characterize viral subtypes and to evaluate the immune response of mallards captured on multiple occasions through time. We captured 923 mallards during three successive sampling years: Fairbanks in 2012/13 and 2013/14, and Anchorage in 2014/15. Prevalence varied by age, season, and year/site with high and relatively stable estimates throughout the non-breeding season. Infected birds were detected in all locations/seasons except early-winter in Fairbanks during 2013/14. IAVs with 17 combinations of hemagglutinin (H1–5, H7–9, H11, H12) and neuraminidase (N1–6, N8, N9) subtypes were isolated. Antibodies to IAVs were detected throughout autumn and winter for all sampling locations and years, however, seroprevalence was higher among adults and varied among years. Mallards exhibited individual heterogeneity with regard to immune response, providing instances of both seroconversion and seroreversion to detected viral subtypes. The probability that an individual transitioned from one serostatus to another varied by age, with juvenile mallards having higher rates of seroconversion and seroreversion than adults. Our study provides evidence that a diversity of IAVs circulate in populations of mallards wintering at urban locations in Alaska, and we suggest waterfowl wintering at high-latitudes may play an important role in maintenance of viruses across breeding seasons.
Collapse
Affiliation(s)
- Timothy J. Spivey
- Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, Alaska, United States of America
- U.S. Geological Survey, Alaska Science Center, Anchorage, Alaska, United States of America
- * E-mail:
| | - Mark S. Lindberg
- Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, Alaska, United States of America
- Institute of Arctic Biology, University of Alaska, Fairbanks, Alaska, United States of America
| | - Brandt W. Meixell
- U.S. Geological Survey, Alaska Science Center, Anchorage, Alaska, United States of America
| | - Kyle R. Smith
- Alaska Department of Fish and Game, Anchorage, Alaska, United States of America
| | - Wendy B. Puryear
- Department of Biological Engineering & Division of Comparative Medicine, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
| | - Kimberly R. Davis
- Department of Biological Engineering & Division of Comparative Medicine, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
| | - Jonathan A. Runstadler
- Department of Biological Engineering & Division of Comparative Medicine, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
| | - David E. Stallknecht
- College of Veterinary Medicine, Department of Population Health, University of Georgia, Athens, Georgia, United States of America
| | - Andrew M. Ramey
- U.S. Geological Survey, Alaska Science Center, Anchorage, Alaska, United States of America
| |
Collapse
|
32
|
Latorre-Margalef N, Brown JD, Fojtik A, Poulson RL, Carter D, Franca M, Stallknecht DE. Competition between influenza A virus subtypes through heterosubtypic immunity modulates re-infection and antibody dynamics in the mallard duck. PLoS Pathog 2017. [PMID: 28640898 PMCID: PMC5481145 DOI: 10.1371/journal.ppat.1006419] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Our overall hypothesis is that host population immunity directed at multiple antigens will influence the prevalence, diversity and evolution of influenza A virus (IAV) in avian populations where the vast subtype diversity is maintained. To investigate how initial infection influences the outcome of later infections with homologous or heterologous IAV subtypes and how viruses interact through host immune responses, we carried out experimental infections in mallard ducks (Anas platyrhynchos). Mallards were pre-challenged with an H3N8 low-pathogenic IAV and were divided into six groups. At five weeks post H3N8 inoculation, each group was challenged with a different IAV subtype (H4N5, H10N7, H6N2, H12N5) or the same H3N8. Two additional pre-challenged groups were inoculated with the homologous H3N8 virus at weeks 11 and 15 after pre-challenge to evaluate the duration of protection. The results showed that mallards were still resistant to re-infection after 15 weeks. There was a significant reduction in shedding for all pre-challenged groups compared to controls and the outcome of the heterologous challenges varied according to hemagglutinin (HA) phylogenetic relatedness between the viruses used. There was a boost in the H3 antibody titer after re-infection with H4N5, which is consistent with original antigenic sin or antigenic seniority and suggest a putative strategy of virus evasion. These results imply competition between related subtypes that could regulate IAV subtype population dynamics in nature. Collectively, we provide new insights into within-host IAV complex interactions as drivers of IAV antigenic diversity that could allow the circulation of multiple subtypes in wild ducks.
Collapse
Affiliation(s)
- Neus Latorre-Margalef
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, Georgia, United States of America
- Department of Biology, Lund University, Lund, Sweden
- * E-mail:
| | - Justin D. Brown
- Pennsylvania Game Commission, Pennsylvania State University, Animal Diagnostic Laboratory, University Park, Pennsylvania, United States of America
| | - Alinde Fojtik
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, Georgia, United States of America
| | - Rebecca L. Poulson
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, Georgia, United States of America
| | - Deborah Carter
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, Georgia, United States of America
| | - Monique Franca
- Poultry Diagnostic and Research Center, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, Georgia, United States of America
| | - David E. Stallknecht
- Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, Georgia, United States of America
| |
Collapse
|
33
|
Xu Y, Ramey AM, Bowman AS, DeLiberto TJ, Killian ML, Krauss S, Nolting JM, Torchetti MK, Reeves AB, Webby RJ, Stallknecht DE, Wan XF. Low-Pathogenic Influenza A Viruses in North American Diving Ducks Contribute to the Emergence of a Novel Highly Pathogenic Influenza A(H7N8) Virus. J Virol 2017; 91:e02208-16. [PMID: 28202755 PMCID: PMC5391441 DOI: 10.1128/jvi.02208-16] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2016] [Accepted: 02/08/2017] [Indexed: 12/12/2022] Open
Abstract
Introductions of low-pathogenic avian influenza (LPAI) viruses of subtypes H5 and H7 into poultry from wild birds have the potential to mutate to highly pathogenic avian influenza (HPAI) viruses, but such viruses' origins are often unclear. In January 2016, a novel H7N8 HPAI virus caused an outbreak in turkeys in Indiana, USA. To determine the virus's origin, we sequenced the genomes of 441 wild-bird origin influenza A viruses (IAVs) from North America and subjected them to evolutionary analyses. The results showed that the H7N8 LPAI virus most likely circulated among diving ducks in the Mississippi flyway during autumn 2015 and was subsequently introduced to Indiana turkeys, in which it evolved high pathogenicity. Preceding the outbreak, an isolate with six gene segments (PB2, PB1, PA, HA, NA, and NS) sharing >99% sequence identity with those of H7N8 turkey isolates was recovered from a diving duck sampled in Kentucky, USA. H4N8 IAVs from other diving ducks possessed five H7N8-like gene segments (PB2, PB1, NA, MP, and NS; >98% sequence identity). Our findings suggest that viral gene constellations circulating among diving ducks can contribute to the emergence of IAVs that affect poultry. Therefore, diving ducks may serve an important and understudied role in the maintenance, diversification, and transmission of IAVs in the wild-bird reservoir.IMPORTANCE In January 2016, a novel H7N8 HPAI virus caused a disease outbreak in turkeys in Indiana, USA. To determine the origin of this virus, we sequenced and analyzed 441 wild-bird origin influenza virus strains isolated from wild birds inhabiting North America. We found that the H7N8 LPAI virus most likely circulated among diving ducks in the Mississippi flyway during autumn 2015 and was subsequently introduced to Indiana turkeys, in which it evolved high pathogenicity. Our results suggest that viral gene constellations circulating among diving ducks can contribute to the emergence of IAVs that affect poultry. Therefore, diving ducks may play an important and understudied role in the maintenance, diversification, and transmission of IAVs in the wild-bird reservoir. Our study also highlights the importance of a coordinated, systematic, and collaborative surveillance for IAVs in both poultry and wild-bird populations.
Collapse
Affiliation(s)
- Yifei Xu
- Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, USA
| | - Andrew M Ramey
- U.S. Geological Survey, Alaska Science Center, Anchorage, Alaska, USA
| | - Andrew S Bowman
- Department of Veterinary Preventive Medicine, Ohio State University, Columbus, Ohio, USA
| | - Thomas J DeLiberto
- National Wildlife Disease Program, Wildlife Services, Animal and Plant Health Inspection Service, U.S. Department of Agriculture, Fort Collins, Colorado, USA
| | - Mary L Killian
- National Veterinary Services Laboratories, Veterinary Services, U.S. Department of Agriculture, Ames, Iowa, USA
| | - Scott Krauss
- Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA
| | - Jacqueline M Nolting
- Department of Veterinary Preventive Medicine, Ohio State University, Columbus, Ohio, USA
| | - Mia Kim Torchetti
- National Veterinary Services Laboratories, Veterinary Services, U.S. Department of Agriculture, Ames, Iowa, USA
| | - Andrew B Reeves
- U.S. Geological Survey, Alaska Science Center, Anchorage, Alaska, USA
| | - Richard J Webby
- Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA
| | - Xiu-Feng Wan
- Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, USA
| |
Collapse
|
34
|
Wille M, Latorre-Margalef N, Tolf C, Stallknecht DE, Waldenström J. No evidence for homosubtypic immunity of influenza H3 in Mallards following vaccination in a natural experimental system. Mol Ecol 2017; 26:1420-1431. [PMID: 27997047 PMCID: PMC5347849 DOI: 10.1111/mec.13967] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2016] [Revised: 12/07/2016] [Accepted: 12/08/2016] [Indexed: 11/28/2022]
Abstract
The Mallard (Anas platyrhynchos) is an important reservoir species for influenza A viruses (IAV), and in this host, prevalence and virus diversity are high. Studies have demonstrated the presence of homosubtypic immunity, where individuals are unlikely to be reinfected with the same subtype within an autumn season. Further, evidence for heterosubtypic immunity exists, whereby immune responses specific for one subtype offer partial or complete protection against related HA subtypes. We utilized a natural experimental system to determine whether homo- or heterospecific immunity could be induced following experimental vaccination. Thirty Mallards were vaccinated with an inactivated H3, H6 or a sham vaccine and after seroconversion were exposed to naturally infected wild conspecifics. All ducks were infected within 2 days and had both primary and secondary infections. Overall, there was no observable difference between groups; all individuals were infected with H3 and H10 IAV. At the cessation of the experiment, most individuals had anti-NP antibodies and neutralizing antibodies against H10. Not all individuals had H3 neutralizing antibodies. The isolated H3 IAVs revealed genetic dissimilarity to the H3 vaccine strain, specifically substitutions in the vicinity of the receptor-binding site. There was no evidence of vaccine-induced homosubtypic immunity to H3, a likely result of both a poor H3 immune response in the ducks and H3 immune escape. Likewise, there was no observed heterosubtypic protection related to H6 vaccination. This study highlights the need for experimental approaches to assess how exposure to pathogens and resulting immune processes translates to individual and population disease dynamics.
Collapse
Affiliation(s)
- M Wille
- Centre for Ecology and Evolution in Microbial Model Systems, Linnaeus University, SE-391 82, Kalmar, Sweden
| | - N Latorre-Margalef
- Centre for Ecology and Evolution in Microbial Model Systems, Linnaeus University, SE-391 82, Kalmar, Sweden.,Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, GA, 30602, USA
| | - C Tolf
- Centre for Ecology and Evolution in Microbial Model Systems, Linnaeus University, SE-391 82, Kalmar, Sweden
| | - D E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, Department of Population Health, The University of Georgia, Athens, GA, 30602, USA
| | - J Waldenström
- Centre for Ecology and Evolution in Microbial Model Systems, Linnaeus University, SE-391 82, Kalmar, Sweden
| |
Collapse
|
35
|
Zanin M, Koçer ZA, Poulson RL, Gabbard JD, Howerth EW, Jones CA, Friedman K, Seiler J, Danner A, Kercher L, McBride R, Paulson JC, Wentworth DE, Krauss S, Tompkins SM, Stallknecht DE, Webster RG. Potential for Low-Pathogenic Avian H7 Influenza A Viruses To Replicate and Cause Disease in a Mammalian Model. J Virol 2017; 91:e01934-16. [PMID: 27852855 PMCID: PMC5244340 DOI: 10.1128/jvi.01934-16] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2016] [Accepted: 11/10/2016] [Indexed: 11/20/2022] Open
Abstract
H7 subtype influenza A viruses are widely distributed and have been responsible for human infections and numerous outbreaks in poultry with significant impact. Despite this, the disease-causing potential of the precursor low-pathogenic (LP) H7 viruses from the wild bird reservoir has not been investigated. Our objective was to assess the disease-causing potential of 30 LP H7 viruses isolated from wild avian species in the United States and Canada using the DBA/2J mouse model. Without prior mammalian adaptation, the majority of viruses, 27 (90%), caused mortality in mice. Of these, 17 (56.7%) caused 100% mortality and 24 were of pathogenicity similar to that of A/Anhui/1/2013 (H7N9), which is highly pathogenic in mice. Viruses of duck origin were more pathogenic than those of shorebird origin, as 13 of 18 (72.2%) duck origin viruses caused 100% mortality while 4 of 12 (33.3%) shorebird origin viruses caused 100% mortality, despite there being no difference in mean lung viral titers between the groups. Replication beyond the respiratory tract was also evident, particularly in the heart and brain. Of the 16 viruses studied for fecal shedding, 11 were detected in fecal samples. These viruses exhibited a strong preference for avian-type α2,3-linked sialic acids; however, binding to mammalian-type α2,6-linked sialic acids was also detected. These findings indicate that LP avian H7 influenza A viruses are able to infect and cause disease in mammals without prior adaptation and therefore pose a potential public health risk. IMPORTANCE Low-pathogenic (LP) avian H7 influenza A viruses are widely distributed in the avian reservoir and are the precursors of numerous outbreaks of highly pathogenic avian influenza viruses in commercial poultry farms. However, unlike highly pathogenic H7 viruses, the disease-causing potential of LP H7 viruses from the wild bird reservoir has not been investigated. To address this, we studied 30 LP avian H7 viruses isolated from wild avian species in the United States and Canada using the DBA/2J mouse model. Surprisingly, the majority of these viruses, 90%, caused mortality in mice without prior mammalian adaptation, and 56.7% caused 100% mortality. There was also evidence of spread beyond the respiratory tract and fecal shedding. Therefore, the disease-causing potential of LP avian H7 influenza A viruses in mammals may be underestimated, and these viruses therefore pose a potential public health risk.
Collapse
Affiliation(s)
- Mark Zanin
- Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA
| | - Zeynep A Koçer
- Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA
| | - Rebecca L Poulson
- Department of Population Health, University of Georgia, Athens, Georgia, USA
| | - Jon D Gabbard
- Department of Infectious Diseases, University of Georgia, Athens, Georgia, USA
| | - Elizabeth W Howerth
- Department of Infectious Diseases, University of Georgia, Athens, Georgia, USA
| | - Cheryl A Jones
- Department of Infectious Diseases, University of Georgia, Athens, Georgia, USA
| | - Kimberly Friedman
- Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA
| | - Jon Seiler
- Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA
| | - Angela Danner
- Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA
| | - Lisa Kercher
- Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA
| | - Ryan McBride
- Departments of Cell and Molecular Biology and Chemical Physiology, Scripps Research Institute, La Jolla, California, USA
| | - James C Paulson
- Departments of Cell and Molecular Biology and Chemical Physiology, Scripps Research Institute, La Jolla, California, USA
| | | | - Scott Krauss
- Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA
| | - Stephen M Tompkins
- Department of Infectious Diseases, University of Georgia, Athens, Georgia, USA
| | - David E Stallknecht
- Department of Population Health, University of Georgia, Athens, Georgia, USA
| | - Robert G Webster
- Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA
| |
Collapse
|
36
|
Segovia KM, Stallknecht DE, Kapczynski DR, Stabler L, Berghaus RD, Fotjik A, Latorre-Margalef N, França MS. Adaptive Heterosubtypic Immunity to Low Pathogenic Avian Influenza Viruses in Experimentally Infected Mallards. PLoS One 2017; 12:e0170335. [PMID: 28107403 PMCID: PMC5249058 DOI: 10.1371/journal.pone.0170335] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2016] [Accepted: 01/03/2017] [Indexed: 12/25/2022] Open
Abstract
Mallards are widely recognized as reservoirs for Influenza A viruses (IAV); however, host factors that might prompt seasonality and trends in subtype diversity of IAV such as adaptive heterosubtypic immunity (HSI) are not well understood. To investigate this, we inoculated mallards with a prevailing H3N8 low pathogenic avian influenza virus (LPAIV) subtype in waterfowl to determine if prior infection with this virus would be protective against heterosubtypic infections with the H4N6, H10N7 and H14N5 LPAIV subtypes after one, two and three months, respectively. Also, we investigated the effect of cumulative immunity after sequential inoculation of mallards with these viruses in one-month intervals. Humoral immunity was assessed by microneutralization assays using a subset of representative LPAIV subtypes as antigens. Our results indicate that prior inoculation with the H3N8 virus confers partial protective immunity against subsequent heterosubtypic infections with the robustness of HSI related to the phylogenetic similarity of the HA protein of the strains used. Furthermore, induced HSI was boosted and followed by repeated exposure to more than one LPAIV subtype. Our findings provide further information on the contributions of HSI and its role in the dynamics of IAV subtype diversity in mallards.
Collapse
Affiliation(s)
- Karen M. Segovia
- Poultry Diagnostic and Research Center, The University of Georgia, Athens, Georgia, United States of America
| | - David E. Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America
| | - Darrell R. Kapczynski
- Southeast Poultry Research Laboratory, Agricultural Research Service, U.S. Department of Agriculture, Athens, Georgia, United States of America
| | - Lisa Stabler
- Poultry Diagnostic and Research Center, The University of Georgia, Athens, Georgia, United States of America
| | - Roy D. Berghaus
- Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America
| | - Alinde Fotjik
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America
| | - Neus Latorre-Margalef
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America
| | - Monique S. França
- Poultry Diagnostic and Research Center, The University of Georgia, Athens, Georgia, United States of America
- * E-mail:
| |
Collapse
|
37
|
Wilson WC, Gaudreault NN, Jasperson DC, Johnson DJ, Ostlund EN, Chase CL, Ruder MG, Stallknecht DE. Molecular evolution of American field strains of bluetongue and epizootic haemorrhagic disease viruses. Vet Ital 2016; 51:269-73. [PMID: 26741243 DOI: 10.12834/vetit.555.2627.1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Recent Orbivirus occurrences in the Americas have been investigated using whole genome amplification and sequencing followed by phylogenetic analysis. The bluetongue virus (BTV) and epizootic haemorrhagic disease virus (EHDV) whole genomes were amplified without prior sequence knowledge and deep sequenced. This technology was applied to evaluate BTV‑3 isolates spanning 4 decades from Florida, Arkansas, Mississippi, South Dakota, Central America, and the Caribbean basin. The results of the dataset analysis are consistent with the hypothesis that these viruses were introduced into the United States from Central America and the Caribbean basin. A similar analysis has been performed on a recent BTV‑2 isolate from California. It indicates that the BTV‑2 strain was likely introduced into Florida and then moved South to the Caribbean and West to California. A historical (1955‑2012) molecular characterisation of EHDV strains was also completed, and subsequently used as reference sequence for comparison of genomes from recent 2012 cattle isolates associated with clinical disease. Finally, this analysis was performed on BTV‑11 isolated from 2 canine cases and demonstrated that the genome sequences of the virus isolates from these cases were almost identical. These studies indicate the value of this technology in understanding virus epidemiology and ecology.
Collapse
Affiliation(s)
- William C Wilson
- Arthropod‑Borne Animal Diseases Research Unit, United States Department of Agriculture, Agricultural Research Service, Manhattan, KS, USA
| | | | | | | | | | | | | | | |
Collapse
|
38
|
Pantin-Jackwood MJ, Costa-Hurtado M, Shepherd E, DeJesus E, Smith D, Spackman E, Kapczynski DR, Suarez DL, Stallknecht DE, Swayne DE. Pathogenicity and Transmission of H5 and H7 Highly Pathogenic Avian Influenza Viruses in Mallards. J Virol 2016; 90:9967-9982. [PMID: 27558429 PMCID: PMC5068544 DOI: 10.1128/jvi.01165-16] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2016] [Accepted: 08/19/2016] [Indexed: 11/20/2022] Open
Abstract
Wild aquatic birds have been associated with the intercontinental spread of H5 subtype highly pathogenic avian influenza (HPAI) viruses of the A/goose/Guangdong/1/96 (Gs/GD) lineage during 2005, 2010, and 2014, but dispersion by wild waterfowl has not been implicated with spread of other HPAI viruses. To better understand why Gs/GD H5 HPAI viruses infect and transmit more efficiently in waterfowl than other HPAI viruses, groups of mallard ducks were challenged with one of 14 different H5 and H7 HPAI viruses, including a Gs/GD lineage H5N1 (clade 2.2) virus from Mongolia, part of the 2005 dispersion, and the H5N8 and H5N2 index HPAI viruses (clade 2.3.4.4) from the United States, part of the 2014 dispersion. All virus-inoculated ducks and contact exposed ducks became infected and shed moderate to high titers of the viruses, with the exception that mallards were resistant to Ck/Pennsylvania/83 and Ck/Queretaro/95 H5N2 HPAI virus infection. Clinical signs were only observed in ducks challenged with the H5N1 2005 virus, which all died, and with the H5N8 and H5N2 2014 viruses, which had decreased weight gain and fever. These three viruses were also shed in higher titers by the ducks, which could facilitate virus transmission and spread. This study highlights the possible role of wild waterfowl in the spread of HPAI viruses. IMPORTANCE The spread of H5 subtype highly pathogenic avian influenza (HPAI) viruses of the Gs/GD lineage by migratory waterfowl is a serious concern for animal and public health. H5 and H7 HPAI viruses are considered to be adapted to gallinaceous species (chickens, turkeys, quail, etc.) and less likely to infect and transmit in wild ducks. In order to understand why this is different with certain Gs/GD lineage H5 HPAI viruses, we compared the pathogenicity and transmission of several H5 and H7 HPAI viruses from previous poultry outbreaks to Gs/GD lineage H5 viruses, including H5N1 (clade 2.2), H5N8 and H5N2 (clade 2.3.4.4) viruses, in mallards as a representative wild duck species. Surprisingly, most HPAI viruses examined in this study replicated well and transmitted among mallards; however, the three Gs/GD lineage H5 HPAI viruses replicated to higher titers, which could explain the transmission of these viruses in susceptible wild duck populations.
Collapse
Affiliation(s)
- Mary J Pantin-Jackwood
- Exotic and Emerging Avian Viral Diseases Unit, Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, Georgia, USA
| | - Mar Costa-Hurtado
- Exotic and Emerging Avian Viral Diseases Unit, Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, Georgia, USA
| | - Eric Shepherd
- Exotic and Emerging Avian Viral Diseases Unit, Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, Georgia, USA
| | - Eric DeJesus
- Exotic and Emerging Avian Viral Diseases Unit, Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, Georgia, USA
| | - Diane Smith
- Exotic and Emerging Avian Viral Diseases Unit, Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, Georgia, USA
| | - Erica Spackman
- Exotic and Emerging Avian Viral Diseases Unit, Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, Georgia, USA
| | - Darrell R Kapczynski
- Exotic and Emerging Avian Viral Diseases Unit, Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, Georgia, USA
| | - David L Suarez
- Exotic and Emerging Avian Viral Diseases Unit, Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, Georgia, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, The University of Georgia, Athens, Georgia, USA
| | - David E Swayne
- Exotic and Emerging Avian Viral Diseases Unit, Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, Georgia, USA
| |
Collapse
|
39
|
Sharma P, Stallknecht DE, Howerth EW. Epizootic haemorrhagic disease virus induced apoptosis in bovine carotid artery endothelium is p53 independent. Vet Ital 2016; 52:363-368. [PMID: 27723048 DOI: 10.12834/vetit.548.2604.2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Epizootic haemorrhagic disease virus (EHDV) replicates in endothelium and it has been shown that EHDV serotype 2 (Ibaraki) is able to cause cell death by apoptosis in cow pulmonary artery endothelial cells. However, the underlying mechanism has not been established. For some viruses, such as influenza, a p53 dependent mechanism has been demonstrated in viral induced apoptosis. In this study, we investigate the involvement of p53 in the induction of apoptosis in a US isolate of EHDV serotype 2 in cow endothelium. We inoculated cow carotid artery endothelial cell cultures with live and inactivated EHDV‑2 isolated from a white‑tailed deer (Odocoileus virginianus). Using in situ nick end‑labeling (TUNEL), caspase‑3 (cleaved) immunohistochemistry (IHC), flow cytometry and annexin staining we documented the development of apoptosis and its direct relation to viral replication. p53 gene regulation and protein expression were assessed by reverse transcription polymerase chain reaction and IHC, respectively, in infected cells. We show that p53 mRNA was not upregulated and protein expression was not significantly increased. No increase of p53 mRNA or protein expression was observed in cells that stained positive for EHDV antigen. Our results indicate that EHDV induces apoptosis through a p53 independent mechanism.
Collapse
|
40
|
|
41
|
Mesquita LP, Diaz MH, Howerth EW, Stallknecht DE, Noblet R, Gray EW, Mead DG. Pathogenesis of Vesicular Stomatitis New Jersey Virus Infection in Deer Mice ( Peromyscus maniculatus) Transmitted by Black Flies ( Simulium vittatum). Vet Pathol 2016; 54:74-81. [PMID: 27312365 DOI: 10.1177/0300985816653172] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The natural transmission of vesicular stomatitis New Jersey virus (VSNJV), an arthropod-borne virus, is not completely understood. Rodents may have a role as reservoir or amplifying hosts. In this study, juvenile and nestling deer mice ( Peromyscus maniculatus) were exposed to VSNJV-infected black fly ( Simulium vittatum) bites followed by a second exposure to naive black flies on the nestling mice. Severe neurological signs were observed in some juvenile mice by 6 to 8 days postinoculation (DPI); viremia was not detected in 25 juvenile deer mice following exposure to VSNJV-infected fly bites. Both juvenile and nestling mice had lesions and viral antigen in the central nervous system (CNS); in juveniles, their distribution suggested that the sensory pathway was the most likely route to the CNS. In contrast, a hematogenous route was probably involved in nestling mice, since all of these mice developed viremia and had widespread antigen distribution in the CNS and other tissues on 2 DPI. VSNJV was recovered from naive flies that fed on viremic nestling mice. This is the first report of viremia in a potential natural host following infection with VSNJV via insect bite and conversely of an insect becoming infected with VSNJV by feeding on a viremic host. These results, along with histopathology and immunohistochemistry, show that nestling mice have widespread dissemination of VSNJV following VSNJV-infected black fly bite and are a potential reservoir or amplifying host for VSNJV.
Collapse
Affiliation(s)
- L P Mesquita
- 1 Department of Pathology, University of Georgia, Athens, GA, USA.,2 Department of Pathology, University of São Paulo, São Paulo, Brazil
| | - M H Diaz
- 3 Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA, USA.,4 Centers for Disease Control and Prevention, Division of Bacterial Diseases, Respiratory Diseases Branch, Atlanta, GA, USA
| | - E W Howerth
- 1 Department of Pathology, University of Georgia, Athens, GA, USA
| | - D E Stallknecht
- 3 Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA, USA
| | - R Noblet
- 5 Department of Entomology, University of Georgia, Athens, GA, USA
| | - E W Gray
- 5 Department of Entomology, University of Georgia, Athens, GA, USA
| | - D G Mead
- 3 Southeastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA, USA
| |
Collapse
|
42
|
Ramey AM, Kim Torchetti M, Poulson RL, Carter D, Reeves AB, Link P, Walther P, Lebarbenchon C, Stallknecht DE. Evidence for wild waterfowl origin of H7N3 influenza A virus detected in captive-reared New Jersey pheasants. Arch Virol 2016; 161:2519-26. [PMID: 27372454 DOI: 10.1007/s00705-016-2947-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Accepted: 06/20/2016] [Indexed: 10/21/2022]
Abstract
In August 2014, a low-pathogenic H7N3 influenza A virus was isolated from pheasants at a New Jersey gamebird farm and hunting preserve. In this study, we use phylogenetic analyses and calculations of genetic similarity to gain inference into the genetic ancestry of this virus and to identify potential routes of transmission. Results of maximum-likelihood (ML) and maximum-clade-credibility (MCC) phylogenetic analyses provide evidence that A/pheasant/New Jersey/26996-2/2014 (H7N3) had closely related H7 hemagglutinin (HA) and N3 neuraminidase (NA) gene segments as compared to influenza A viruses circulating among wild waterfowl in the central and eastern USA. The estimated time of the most recent common ancestry (TMRCA) between the pheasant virus and those most closely related from wild waterfowl was early 2013 for both the H7 HA and N3 NA gene segments. None of the viruses from waterfowl identified as being most closely related to A/pheasant/New Jersey/26996-2/2014 at the HA and NA gene segments in ML and MCC phylogenetic analyses shared ≥99 % nucleotide sequence identity for internal gene segment sequences. This result indicates that specific viral strains identified in this study as being closely related to the HA and NA gene segments of A/pheasant/New Jersey/26996-2/2014 were not the direct predecessors of the etiological agent identified during the New Jersey outbreak. However, the recent common ancestry of the H7 and N3 gene segments of waterfowl-origin viruses and the virus isolated from pheasants suggests that viral diversity maintained in wild waterfowl likely played an important role in the emergence of A/pheasant/New Jersey/26996-2/2014.
Collapse
Affiliation(s)
- Andrew M Ramey
- U.S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, Alaska, 99508, USA.
| | - Mia Kim Torchetti
- National Veterinary Services Laboratories, Veterinary Services, U.S. Department of Agriculture, P.O. Box 844, Ames, Iowa, 50010, USA
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, 30602, USA
| | - Deborah Carter
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, 30602, USA
| | - Andrew B Reeves
- U.S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, Alaska, 99508, USA
| | - Paul Link
- Louisiana Department of Wildlife and Fisheries, 2000 Quail Drive, Room 436, Baton Rouge, Louisiana, 70808, USA
| | - Patrick Walther
- US Fish and Wildlife Service, Texas Chenier Plain Refuge Complex, 4017 FM 563, P.O. Box 278, Anahuac, Texas, 77514, USA
| | - Camille Lebarbenchon
- Université de La Réunion, UMR Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Saint Denis, Réunion
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, 30602, USA
| |
Collapse
|
43
|
Johnson DJ, Ostlund EN, Stallknecht DE, Goekjian VH, Jenkins-Moore M, Harris SC. First Report of Bluetongue Virus Serotype 1 Isolated from a White-Tailed Deer in the United States. J Vet Diagn Invest 2016; 18:398-401. [PMID: 16921883 DOI: 10.1177/104063870601800415] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
In November 2004, tissues were collected from a hunter-killed white-tailed deer in St. Mary Parish, Louisiana. Bluetongue virus (BTV) was isolated from the tissues; however, the isolate could not be identified as any of the US domestic serotypes. Subsequent testing by virus neutralization using serotype-specific antiserum tentatively identified the isolate as BTV serotype 1 (BTV-1), which had not previously been found in the United States. Primers were designed based on the sequence of an outer capsid protein gene of a South African BTV-1 strain. Reverse transcription–polymerase chain reaction testing with the BTV-1 primers and product sequencing confirmed the Louisiana isolate as BTV-1. This is the first report of BTV-1 in the United States.
Collapse
Affiliation(s)
- Donna J Johnson
- Diagnostic Virology Laboratory, National Veterinary Services Laboratories, Ames, IA 50010, USA
| | | | | | | | | | | |
Collapse
|
44
|
Ramey AM, Reed JA, Walther P, Link P, Schmutz JA, Douglas DC, Stallknecht DE, Soos C. Evidence for the exchange of blood parasites between North America and the Neotropics in blue-winged teal (Anas discors). Parasitol Res 2016; 115:3923-39. [DOI: 10.1007/s00436-016-5159-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2016] [Accepted: 06/01/2016] [Indexed: 12/30/2022]
|
45
|
Ramey AM, Reeves AB, Poulson RL, Carter DL, Davis-Fields N, Stallknecht DE. Genome Sequence of a Novel H14N7 Subtype Influenza A Virus Isolated from a Blue-Winged Teal (Anas discors) Harvested in Texas, USA. Genome Announc 2016; 4:e00520-16. [PMID: 27284136 PMCID: PMC4901227 DOI: 10.1128/genomea.00520-16] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 04/22/2016] [Accepted: 04/29/2016] [Indexed: 11/26/2022]
Abstract
We report here the complete genome sequence of a novel H14N7 subtype influenza A virus (IAV) isolated from a blue-winged teal (Anas discors) harvested in Texas, USA. The genomic characteristics of this IAV strain with a previously undetected subtype combination suggest recent viral evolution within the New World wild-bird IAV reservoir.
Collapse
Affiliation(s)
- Andrew M Ramey
- U.S. Geological Survey, Alaska Science Center, Anchorage, Alaska, USA
| | - Andrew B Reeves
- U.S. Geological Survey, Alaska Science Center, Anchorage, Alaska, USA
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, The University of Georgia, Athens, Georgia, USA
| | - Deborah L Carter
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, The University of Georgia, Athens, Georgia, USA
| | - Nicholas Davis-Fields
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, The University of Georgia, Athens, Georgia, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, The University of Georgia, Athens, Georgia, USA
| |
Collapse
|
46
|
Wong JK, Wilcox BR, Fojtik A, Poulson RL, Stallknecht DE. Antibodies to Influenza A Viruses in Wintering Snow Geese (Chen caerulescens) in Texas. Avian Dis 2016; 60:337-40. [DOI: 10.1637/11104-042115-regr] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
|
47
|
Maxted AM, Sitters HP, Luttrell MP, Dey AD, Kalasz KS, Niles LJ, Stallknecht DE. Spring Migration Stopover Ecology of Avian Influenza Virus Shorebird Hosts at Delaware Bay. Avian Dis 2016; 60:394-405. [DOI: 10.1637/11079-040515-reg] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
|
48
|
Guinn K, Fojtik A, Davis-Fields N, Poulson RL, Krauss S, Webster RG, Stallknecht DE. Antibodies to Influenza A Viruses in Gulls at Delaware Bay, USA. Avian Dis 2016; 60:341-5. [DOI: 10.1637/11103-042115-reg] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
|
49
|
Ruder MG, Lysyk TJ, Stallknecht DE, Foil LD, Johnson DJ, Chase CC, Dargatz DA, Gibbs EPJ. Transmission and Epidemiology of Bluetongue and Epizootic Hemorrhagic Disease in North America: Current Perspectives, Research Gaps, and Future Directions. Vector Borne Zoonotic Dis 2016; 15:348-63. [PMID: 26086556 DOI: 10.1089/vbz.2014.1703] [Citation(s) in RCA: 68] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
Abstract
Bluetongue virus (BTV) and epizootic hemorrhagic disease virus (EHDV) are arthropod-transmitted viruses in the genus Orbivirus of the family Reoviridae. These viruses infect a variety of domestic and wild ruminant hosts, although the susceptibility to clinical disease associated with BTV or EHDV infection varies greatly among host species, as well as between individuals of the same species. Since their initial detection in North America during the 1950s, these viruses have circulated in endemic and epidemic patterns, with occasional incursions to more northern latitudes. In recent years, changes in the pattern of BTV and EHDV infection and disease have forced the scientific community to revisit some fundamental areas related to the epidemiology of these diseases, specifically in relation to virus-vector-host interactions and environmental factors that have potentially enabled the observed changes. The aim of this review is to identify research and surveillance gaps that obscure our understanding of BT and EHD in North America.
Collapse
Affiliation(s)
- Mark G Ruder
- 1 Arthropod-Borne Animal Diseases Research Unit, Agricultural Research Service , United States Department of Agriculture, Manhattan, Kansas
| | - Timothy J Lysyk
- 2 Research Centre , Agriculture and Agri-Food Canada, Lethbridge, Alberta, Canada
| | - David E Stallknecht
- 3 Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia , Athens, Georgia
| | - Lane D Foil
- 4 Bob Jones Wildlife Research Institute, Louisiana State University Agcenter , Idlewild, Louisiana
| | - Donna J Johnson
- 5 National Veterinary Services Laboratories, Science, Technologies and Analysis Services (STAS), Veterinary Services, Animal and Plant Health Inspection Service , United States Department of Agriculture, Ames, Iowa
| | - Christopher C Chase
- 6 Department of Veterinary and Biomedical Sciences, South Dakota State University , Brookings, South Dakota
| | - David A Dargatz
- 7 Center for Epidemiology and Animal Health , STAS, Veterinary Services, Animal and Plant Health Inspection Service, United States Department of Agriculture, Fort Collins, Colorado
| | - E Paul J Gibbs
- 8 Department of Infectious Diseases and Pathology, College of Veterinary Medicine, University of Florida , Gainesville, Florida
| |
Collapse
|
50
|
Ramey AM, Pearce JM, Reeves AB, Poulson RL, Dobson J, Lefferts B, Spragens K, Stallknecht DE. Surveillance for Eurasian-origin and intercontinental reassortant highly pathogenic influenza A viruses in Alaska, spring and summer 2015. Virol J 2016; 13:55. [PMID: 27036114 PMCID: PMC4815243 DOI: 10.1186/s12985-016-0511-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2015] [Accepted: 03/21/2016] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Eurasian-origin and intercontinental reassortant highly pathogenic (HP) influenza A viruses (IAVs) were first detected in North America in wild, captive, and domestic birds during November-December 2014. Detections of HP viruses in wild birds in the contiguous United States and southern Canadian provinces continued into winter and spring of 2015 raising concerns that migratory birds could potentially disperse viruses to more northerly breeding areas where they could be maintained to eventually seed future poultry outbreaks. RESULTS We sampled 1,129 wild birds on the Yukon-Kuskokwim Delta, Alaska, one of the largest breeding areas for waterfowl in North America, during spring and summer of 2015 to test for Eurasian lineage and intercontinental reassortant HP H5 IAVs and potential progeny viruses. We did not detect HP IAVs in our sample collection from western Alaska; however, we isolated five low pathogenic (LP) viruses. Four isolates were of the H6N1 (n = 2), H6N2, and H9N2 combined subtypes whereas the fifth isolate was a mixed infection that included H3 and N7 gene segments. Genetic characterization of these five LP IAVs isolated from cackling (Branta hutchinsii; n = 2) and greater white-fronted geese (Anser albifrons; n = 3), revealed three viral gene segments sharing high nucleotide identity with HP H5 viruses recently detected in North America. Additionally, one of the five isolates was comprised of multiple Eurasian lineage gene segments. CONCLUSIONS Our results did not provide direct evidence for circulation of HP IAVs in the Yukon-Kuskokwim Delta region of Alaska during spring and summer of 2015. Prevalence and genetic characteristics of LP IAVs during the sampling period are concordant with previous findings of relatively low viral prevalence in geese during spring, non-detection of IAVs in geese during summer, and evidence for intercontinental exchange of viruses in western Alaska.
Collapse
Affiliation(s)
- Andrew M Ramey
- U.S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK, 99508, USA.
| | - John M Pearce
- U.S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK, 99508, USA
| | - Andrew B Reeves
- U.S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK, 99508, USA
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, 589 D. W. Brooks Drive, University of Georgia, Athens, GA, 30602, USA
| | - Jennifer Dobson
- Yukon-Kuskokwim Health Corporation, 900 Chief Eddie Hoffman Highway, Bethel, AK, 99559, USA
| | - Brian Lefferts
- Yukon-Kuskokwim Health Corporation, 900 Chief Eddie Hoffman Highway, Bethel, AK, 99559, USA
| | - Kyle Spragens
- U.S. Geological Survey, Western Ecological Research Center, San Francisco Bay Estuary, 505 Azuar Drive, Vallejo, CA, 94592, USA
- U.S. Fish and Wildlife Service, Yukon Delta National Wildlife Refuge, 807 Chief Eddie Hoffman Highway, Bethel, AK, 99559, USA
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, 589 D. W. Brooks Drive, University of Georgia, Athens, GA, 30602, USA
| |
Collapse
|