The interplay of microbially mediated and abiotic reactions in the biogeochemical Fe cycle

Understanding the Effect of Oil-Based Lubricants on the Tribological Behavior of Fe-Cr Alloys from Reactive Molecular Dynamics

In this paper, the frictional behaviors of Fe-Cr alloys in the lubricating effect of oil-based lubricant are investigated through reactive molecular dynamics. It is shown that the oil-based lubricant achieves ultralow friction through hydrodynamic lubrication by linear alpha olefin (C₈H₁₆) and passivation of the friction pairs by hydrogen gas (H₂) and free H atoms generated by the friction chemistry. Moreover, there is a critical value for the transition of the crystal structure of Fe-Cr alloy from body-centered cubic (Bcc) to amorphous structure (Other), leading to a dramatic change in friction. Meanwhile, a sliding interface consisting of a large number of amorphous structures is formed near the rigid layer, which keeps the friction force stable.

Insight into the effect of natural organic matter on the photooxidation of arsenite induced by colloidal ferric hydroxides in water

Surface complexation of arsenite (As(III)) on colloidal ferric hydroxide (CFH) plays an important role not only in the adsorptive immobilization of As(III) but also in the subsequent oxidation of As(III) to arsenate (As(V)) through light-induced ligand-to-metal charge transfer (LMCT) in water at near-neutral pH. However, the effects of natural organic matter (NOM), especially humic substances (HSs) and low molecular weight carboxylic acids (CAs), on the photochemistry of the CFH-As(III) system have not been sufficiently understood. In this work, the inhibition of photooxidation of As(III) in terms of the observed apparent rate constant (k_obs) by six HSs (below 16 mg L^-1) and seven CAs (below 2.5 mM) has been observed in water containing 66 μM Fe(III) and 5 μM As(III) at pH 7 under simulated solar irradiation consisting of UVA (λ_max 365 nm) and UVB (λ_max 313 nm) lights. Total inhibition factors (T) have been determined from the combined effect of light-screening factor (S) and competitive complexation factor (C), wherein both S and C varied with NOM concentration. S was obtained by determining the absorbance of NOM, and C was obtained by fitting modified Langmuir or Freundlich models to the amount of As(III) desorbed from CFH upon the addition of NOM. Statistical analysis between the experimental T_exp and the calculated one according to T_cal = S × C showed that the Freundlich model (RMSE for HS 0.1609 and for CA 0.1771) was better than the Langmuir model and was statistically robust (Q_LOO²= 0.691 > 0.5). This work provided an estimation method for the effects of NOM on As(III) photooxidation in the presence of CFH as well as a deeper understanding of the transformation of arsenic species in sunlit water.

Performance of pilot-scale membrane aerated biofilm reactors integrated with anoxic nano-biotechnological reactor for domestic wastewater treatment

Membrane-aerated biofilm reactors (MABRs) have aroused increasing attention due to their excellent performance in treating wastewater, where the membranes behave as bio-carriers for microorganisms and bubbleless air diffusers. The MABR technology has not been fully commercialized due to reactor design and low total nitrogen (TN) removal efficiency at short hydraulic retention times (HRT). In this study, a hybrid system of MABR 1 integrated with an anoxic nano-biotechnological reactor filled with Granulated Nanoscale Oxyhydroxides of Fe (GNOF) media was evaluated to assess the improvement in nitrogen removal performance at 12, 10, and 4 h of HRTs. At the same time, another MABR (MABR 2) was operated individually at 12, 10, 8, 6, 4, and 2 h of HRTs to assess the influence of HRT on nitrogen removal performance. An enhancement in removal performance was reported in the hybrid MABR-GNOF, achieving the highest removal efficiencies of 74.3 ± 3.1% for ammonium nitrogen (NH₄⁺-N), 69.8 ± 2.1% for total nitrogen (TN), and 90.9 ± 1.7% for chemical oxygen demand (COD), at 12 h HRT. The hybrid MABR-GNOF system attained 18% higher nitrogen removal than the MABR-only system at 12 h of HRT. A simultaneous anoxic nitrification-denitrification and COD oxidation might be developed for the removal of COD, NH₄⁺-N, and TN from domestic wastewater by using GNOF as an electron acceptor in the hybrid MABR-GNOF unit. The findings in this study confirmed the possibility of integration of GNOF and MABR on a pilot scale and are promising for the application of this hybrid system on a full scale.

Role of indigenous microorganisms and organics in the release of iron and trace elements from sediments impacted by iron mine tailings from failed Fundão dam

After Fundão Dam failure in 2015, most of Gualaxo do Norte River in Doce River Basin in Brazil became silted by iron mining tailings consisting mainly of fine-grained quartz, hematite, and goethite. Previous work pointed to the possibility of reductive dissolution of iron and manganese from tailings, leading to mobilization of iron, manganese and trace elements. Several microorganisms were shown to reduce Fe(III) to Fe(II) and Mn(III, IV) to Mn(II) "in vitro", but their roles in mobilization of Fe and trace elements from freshwater sediments are poorly understood. In this work, bottom sediments and water collected in Gualaxo do Norte River were used to build anoxic microcosms amended with acetate, glucose or yeast extract, in order to access if heterotrophic microorganisms, either fermenters or dissimilatory Fe reducers, could reduce Fe(III) from minerals in the sediments to soluble Fe(II), releasing trace elements. The Fe(II) concentrations were measured over time, and trace elements concentrations were evaluated at the end of the experiment. In addition, minerals and biopolymers in bottom sediments were quantified. Results showed that organic substrates, notably glucose, fuelled microbial reduction of iron minerals and release of Fe(II), Mn, Ba, Al and/or Zn from sediments. In general, higher concentrations of organic substrates elicited mobilization of larger amounts of Fe(II) and trace elements from sediments. The results point to the possibility of mobilization of huge amounts of iron and trace elements from sediments to water if excess biodegradable organic matter is released in rivers affected by iron mine tailings.

Iron (hydr)oxide formation in Andosols under extreme climate conditions

Redox-driven biogeochemical cycling of iron plays an integral role in the complex process network of ecosystems, such as carbon cycling, the fate of nutrients and greenhouse gas emissions. We investigate Fe-(hydr)oxide (trans)formation pathways from rhyolitic tephra in acidic topsoils of South Patagonian Andosols to evaluate the ecological relevance of terrestrial iron cycling for this sensitive fjord ecosystem. Using bulk geochemical analyses combined with micrometer-scale-measurements on individual soil aggregates and tephra pumice, we document biotic and abiotic pathways of Fe released from the glassy tephra matrix and titanomagnetite phenocrysts. During successive redox cycles that are controlled by frequent hydrological perturbations under hyper-humid climate, (trans)formations of ferrihydrite-organic matter coprecipitates, maghemite and hematite are closely linked to tephra weathering and organic matter turnover. These Fe-(hydr)oxides nucleate after glass dissolution and complexation with organic ligands, through maghemitization or dissolution-(re)crystallization processes from metastable precursors. Ultimately, hematite represents the most thermodynamically stable Fe-(hydr)oxide formed under these conditions and physically accumulates at redox interfaces, whereas the ferrihydrite coprecipitates represent a so far underappreciated terrestrial source of bio-available iron for fjord bioproductivity. The insights into Fe-(hydr)oxide (trans)formation in Andosols have implications for a better understanding of biogeochemical cycling of iron in this unique Patagonian fjord ecosystem.

Remediation of industrial site soil contaminated with PAHs using stage persulfate oxidation activated by Fe2+ chelated with sodium citrate

The remediation for industrial site soil has attracted public concerns because of the hazardous and hydrophobic properties of organic pollutants existed in the soil. The persulfate oxidation activated by Fe²⁺ chelated with sodium citrate (PS/Fe²⁺/SC) was used to remediate different types of industrial site soils in the present study. The maximum removal rates of Σ16 PAHs in the Nanjing site soil (NJS) and Hefei site soil (HFS) were 73.6% and 85.8% after the second-stage oxidation, respectively. The late oxidation stages couldn't enhance the degradation efficiency of PAHs due to the increase of high crystalline Fe mineral phases both in the NJS and HFS, which significantly decreased the Fe²⁺/Fe³⁺ recycle and further inhibited the reactive oxygen species production during the remediation. The remediation using PS/Fe²⁺/SC could change the soil physicochemical properties, such as the functional groups, specific surface area (SSA), total pore volume (TPV) and some UV spectral parameters of soil particles. Additionally, the oxidation of PS/Fe²⁺/SC also altered the composition of soil dissolve organic matters, especially the fulvic acid, which further affected the Fe²⁺ oxidation. The study mainly discloses the mechanism of limitation using persulfate oxidation activated by Fe materials at late oxidation stage.

Quantifying sulfidization and non-sulfidization in long-term in-situ microbial colonized As(V)-ferrihydrite coated sand columns: Insights into As mobility

Sulfide-induced reduction (sulfidization) of arsenic (As)-bearing Fe(III) (oxyhydro)oxides may lead to As mobilization in aquifer systems. However, little is known about the relative contributions of sulfidization and non-sulfidization of Fe(III) (oxyhydro)oxides reduction to As mobilization. To address this issue, high As groundwater with low sulfide (LS) and high sulfide (HS) concentrations were pumped through As(V)-bearing ferrihydrite-coated sand columns (LS-column and HS-column, respectively) being settled within wells in the western Hetao Basin, China. Sulfidization of As(V)-bearing ferrihydrite was evidenced by the increase in dissolved Fe(II) and the presence of solid Fe(II) and elemental sulfur (S⁰) in both the columns. A conceptual model was built using accumulated S⁰ and Fe(II) produced in the columns to calculate the proportions of sulfidization-induced Fe(III) (oxyhydro)oxide reduction and non-sulfidization-induced Fe(III) (oxyhydro)oxide reduction. Fe(III) reduction via sulfidization occurred preferentially in the inlet ends (LS-column, 31 %; HS-column, 86 %), while Fe(III) reduction via non-sulfidization processes predominated in the outlet ends (LS-column, 96 %; HS-column, 86 %), and was attributed to the metabolism of genera associated with Fe(III) reduction (including Shewanella, Ferribacterium, and Desulfuromonas). Arsenic was mobilized in the columns via sulfidization and non-sulfidization processes. More As was released from the solid of the HS-column than that of the LS-column due to the higher intensity of sulfidization in the presence of higher concentrations of dissolved S(-II). Overall, this study highlights the sulfidization of As-bearing Fe(III) (oxyhydro)oxides as an important As-mobilizing pathway in complex As-Fe-S bio-hydrogeochemical networks.

Dosing with pyrite significantly increases anammox performance: Its role in the electron transfer enhancement and the functions of the Fe-N-S cycle

Anaerobic ammonium oxidation (anammox) represents an energy-efficient process for biological nitrogen removal from ammonium-rich wastewater. However, there are mechanistic issues unsolved regarding the low microbial electron transfer and undesired accumulation of nitrate in treated water, limiting its widespread engineering applications. We found that the addition of pyrite (1 g L^-1 reactor), an earth-abundant iron-bearing sulfide mineral, to the anammox system significantly improved the nitrogen removal rate by 52% in long-term operation at a high substrate shock loading (3.86 kg N m^-3 d^-1). Two lines of evidence were presented to unravel the underlying mechanisms of the pyrite-induced enhancement. Physiochemical evidence indicated that an increase of cytochromes c and Fe-S protein was responsible for the accelerated electron transfer among metabolic enzymes. Multi-omics evidence showed that the depletion of nitrate was attributed to the Fe-N-S cycle driven by nitrate-dependent Fe(II) oxidation and S-based denitrification. This study deepens our understanding of the roles of electron transfer and the Fe-N-S cycle in anammox systems, providing a fundamental basis for the development of mediators in the anammox process for practical implications.

Enhancement and mechanisms of iron-assisted anammox process

Anaerobic ammonium oxidation (anammox) is a sustainable biological nitrogen removal technology that has limited large-scale applications owing to the low cell yield and high sensitivity of anammox bacteria (AnAOB). Fortunately, iron-assisted anammox, being a highly practical method could be an effective solution. This review focused on the iron-assisted anammox process, especially on its performance and mechanisms. In this review, the effects of iron in three different forms (ionic iron, zero-valent iron and iron-containing minerals) on the performance of the anammox process were systematically reviewed and summarized, and the strengthening effects of Fe (II) seem to be more prominent. Moreover, the detailed mechanisms of iron-assisted anammox in previous researches were discussed from macro to micro perspectives. Additionally, applicable iron-assisted methods and unified strengthening mechanisms for improving the stability of nitrogen removal and shortening the start-up time of the system in anammox processes were suggested to explore in future studies. This review was intended to provide helpful information for scientific research and engineering applications of iron-assisted anammox.

Iron redox cycling in layered clay minerals and its impact on contaminant dynamics: A review

A majority of clay minerals contain Fe, and the redox cycling of Fe(III)/Fe(II) in clay minerals has been extensively studied as it may fuel the biogeochemical cycles of nutrients and govern the mobility, toxicity and bioavailability of a number of environmental contaminants. There are three types of Fe in clay minerals, including structural Fe sandwiched in the lattice of clays, Fe species in interlayer space and adsorbed on the external surface of clays. They exhibit distinct reactivity towards contaminants due to their differences in redox properties and accessibility to contaminant species. In natural environments, microbially driven Fe(III)/Fe(II) redox cycling in clay minerals is thought to be important, whereas reductants (e.g., dithionite and Fe(II)) or oxidants (e.g., peroxygens) are capable of enhancing the rates and extents of redox dynamics in engineered systems. Fe(III)-containing clay minerals can directly react with oxidizable pollutants (e.g., phenols and polycyclic aromatic hydrocarbons (PAHs)), whereas structural Fe(II) is able to react with reducible pollutants, such as nitrate, nitroaromatic compounds, chlorinated aliphatic compounds. Also structural Fe(II) can transfer electrons to oxygen (O₂), peroxymonosulfate (PMS), or hydrogen peroxide (H₂O₂), yielding reactive radicals that can promote the oxidative transformation of contaminants. This review summarizes the recent discoveries on redox reactivity of Fe in clay minerals and its links to fates of environmental contaminants. The biological and chemical reduction mechanisms of Fe(III)-clay minerals, as well as the interaction mechanism between Fe(III) or Fe(II)-containing clay minerals and contaminants are elaborated. Some knowledge gaps are identified for better understanding and modelling of clay-associated contaminant behavior and effective design of remediation solutions.

Interactions between organic matter and Fe oxides at soil micro-interfaces: Quantification, associations, and influencing factors

Iron (Fe) oxides are widely recognized to prevent the degradation of organic matter (OM) in environments, thereby promoting the persistence of organic carbon (OC) in soils. Thus, discerning the association mechanisms of Fe oxides and OC interactions is key to effectively influencing the dynamics and extent of organic C cycling in soils. Previous studies have focused on i) quantifying Fe oxide-bound organic carbon (Fe-OC) in individual environments, ii) investigating the distribution and adsorption capacity of Fe-OC, and iii) assessing the redox cycling and transformation of Fe-OC. Furthermore, the widespread application of high-tech instrumentation and methods has greatly contributed to a better understanding of the mechanism of organic mineral assemblages in the past few decades. However, few literature reviews have comprehensively summarized Fe-OC distributions, associations, and characteristics in soil-plant systems. Here, studies investigating the Fe-OC contents among different environments are reviewed. In addition, the mechanisms and processes related to OM transformation dynamics occurring at mineral-organic interfaces are also described. Recent studies have highlighted that diverse interactions occur between Fe oxides and OC, with organic compounds adhering to Fe oxides due to their huge specific surfaces area and active reaction sites. Moreover, we also review methods for understanding Fe-OC interactions at micro-interfaces. Lastly, developmental prospects for understanding coupled Fe-OC geochemical processes in soil environments at molecular- and nano-scales are outlined. The summary suggests that combined advanced techniques and methods should be used in future research to explore micro-interfaces and in situ descriptions of organic mineral assemblages. This review also suggests that future studies need to consider the functional and spatial complexity that is typical of soil/sediment environments where Fe-OC interactions occur.

Plasmonic Probing Single-Cell Bio-Current Waves with a Shrinking Magnetite Nanoprobe

Probing of the single-cell level extracellular electron transfer highlights the maximum output current for microbial fuel cells (MFCs) at hundreds of femtoampere per cell, which is difficult to achieve by existing devices. Past studies focus on the external factors for boosting charge-extraction efficiency from bacteria. Here, we elucidate the intracellular factors that determine this output limit by monitoring the respiratory-driven shrinking kinetics of a single magnetite nanoprobe immobilized on a single Shewanella oneidensis MR-1 cell with plasmonic imaging. Quantified dissolving of nanoprobes unveils a previously undescribed bio-current fluctuation between 0 and 2.7 fA on a ∼40 min cycle. Simultaneously tracing of endogenous oscillations indicates that the bio-current waves are correlated with the periodic cellular electrokinesis. The unsynchronized electron transfer capability in the cell population results in the mean current of 0.24 fA per cell, significantly smaller than in single cells. It explains why the averaged output current of MFCs cannot reach the measured single-cell currents. This work offers a different perspective to improve the power output by extending the active episodes of the bio-current waves.

Microbially mediated Fe-N coupled cycling at different hydrological regimes in riparian wetland

Although the significance of the coupled Fe- and N- cycling processes on biogeochemical transformation in riparian wetlands is well-known, the regulation associated with the changes on the microbiotas during different hydrological regimes remains unclear. This study performed field investigations on the bacterial community compositions (BCC) and specific genera associated to Fe- and N- cycling in the rhizosphere soil and sediments in a riparian wetland in Poyang lake, China. The predominant phyla Proteobacteria, Acidobacteria, and Nitrospirae from all the samples remarkably decreased after long-term continuous flooding, while Actinobacteria, Firmicutes and Bacteroidetes were enriched. For the family level, the relative abundances of iron-oxidizing bacteria (FeOB) Gallionellaceae, and N fixing bacteria Nitrospiraceae and Bradyrhizobiaceae significantly declined upon the long-term flooding and then increased with dewatering, which were consistent with the functional genes sequencing analysis. In which, the Bradyrhizobiaceae (RA 2.0 %-34.6 %) was the dominant nirS denitrifier and potential iron-reducing bacteria (FeRB), Sideroxydans lithotrophicus was one of the dominant FeOB (RA 1.7 %-23 %), which was also identified to be the nirS dentrifier (RA 0.2 %-4.3 %). The absolute quantification of the functional genes levels including nirS, nirK, FeRB (Geobacter spp.) showed their significant increases by 3-7 times upon desiccation compared to that under post-CF. The PCA and RDA results indicated the linkage between redox changes of N and Fe during inundation mediated by FeRB, NOB, and FeOB, which were closely related to hydrochemical indices NO₃^-, Fe²⁺ and SO₄^2-. These evidences all implied the likely occurrence of nitrate reduction coupled to Fe(II) oxidation (NRFeOx) under oligotrophic conditions, which was potentially facilitated by metabolizers consisting of highly correlated Bradyrhizobiaceae and Sideroxydans (rho = 0.86, p < 0.01). These findings provide an interpretation of the biological reactions in the microbially mediated NRFeOx processes driven by hydrological change, which could assist the mechanistic understanding of the global biogeochemical cycles of iron and nitrogen in riparian wetlands.

Simultaneous removal of COD and NH4+-N from domestic sewage by a single-stage up-flow anaerobic biological filter based on Feammox

In recent years, Feammox has made it possible to remove NH₄⁺-N under anaerobic conditions; however, its application in practical wastewater treatment processes has not been extensively reported. In this study, an up-flow anaerobic biological filter based on limonite (Lim-UAF) was developed to facilitate long-term and stable treatment of domestic sewage. Lim-UAF achieved the highest removal efficiency of chemical oxygen demand (COD) and NH₄⁺-N at a hydraulic retention time (HRT) of 24 h (Stage II). Specifically, the COD and NH₄⁺-N content decreased from 240.8 and 30.0 mg/L to about 7.5 and 0.35 mg/L, respectively. To analyze the potential nitrogen removal mechanism, the Lim-UAF was divided into three layers according to the height of the reactor. The results showed that COD and NH₄⁺-N removal had remarkable characteristics in Lim-UAF. More than 55.0% of influent COD was removed in the lower layer (0-30 cm) of Lim-UAF, while 60.2% of NH₄⁺-N was removed in the middle layer (30-60 cm). Microbial community analysis showed that the community structure in the middle and upper layers (60-90 cm) was relatively similar, but quite different from that of the lower layer. Heterotrophic bacteria were dominant in the lower layer, whereas iron-reducing and iron-oxidizing bacteria were enriched in the upper and middle layers. The formation of secondary minerals (siderite and Fe(OH)₃) indicated that the Fe(III)/Fe(II) redox cycle occurred in Lim-UAF, which was triggered by the Feammox and NDFO processes. In summary, limonite was used to develop a single-stage wastewater treatment process for simultaneously removing organic matter and NH₄⁺-N, which has excellent application prospects in domestic sewage treatment.

Environmental implications of agricultural abandonment on Fe cycling: Insight from iron forms and stable isotope composition in karst soil, southwest China

Land-use change influences the fate of nutrient elements, including iron (Fe), and then threaten soil security. In this study, Fe forms and stable isotope composition (δ⁵⁶Fe) in soils were investigated to identify the variations in the processes of Fe cycling during agricultural abandonment in a karst region of Southwest China. Soil δ⁵⁶Fe compositions varied from -0.05‰-0.02‰ in croplands, 0.05‰-0.12‰ in abandoned croplands, to 0.30‰-0.80‰ in the native vegetation lands. In the croplands, Fe oxidation-precipitation process is considered as the main contributor to Fe migration and isotope fractionation, leading to a relatively enrichment of heavier Fe isotope in deeper soil layer. In the abandoned croplands and native vegetation lands, Fe isotope in the organic-rich layer (0-10 cm) was significantly lighter than that in subsurface layer (20-30 cm), mainly due to the recovery of soil organic carbon (SOC) and macro-aggregate after cropland abandonment. Moreover, the eluviation process mainly caused a decrease in soil Fe contents and enrichment of heavy Fe isotope in deeper soils (below 40 cm). The positive correlation between oxidized Fe and SOC contents suggested the accumulation of mobile Fe in soils after agricultural abandonment, which is beneficial for Fe uptake and assimilation by plants. This study suggests that agricultural abandonment significantly reduce soil Fe leaching loss and improve plant Fe supply by SOC accumulation in surface soil, which gives an environmental implication for the management of soil nutrients.

Effect of humic acid on bioreduction of facet-dependent hematite by Shewanella putrefaciens CN-32

Interfacial reactions between iron (Fe) (hydr)oxide surfaces and the activity of bacteria during dissimilatory Fe reduction affect extracellular electron transfer. The presence of organic matter (OM) and exposed facets of Fe (hydr)oxides influence this process. However, the underlying interfacial mechanism of facet-dependent hematite and its toxicity toward microbes during bioreduction in the presence of OM remains unknown. Herein, humic acid (HA), as typical OM, was selected to investigate its effect on the bioreduction of hematite {100} and {001}. When HA concentration was increased from 0 to 500 mg L^-1, the bioreduction rates increased from 0.02 h^-1 to 0.04 h^-1 for hematite {100} and from 0.026 h^-1 to 0.05 h^-1 for hematite {001}. Since hematite {001} owned lower resistance than hematite {100} irrespective of the HA concentration, and hematite {100} was less favorable for reduction. Microscopy-based analysis showed that more hematite {001} nanoparticles adhered to the cell surface and were bound more closely to the bacteria. Moreover, less cell damage was observed in the HA-hematite {001} treatments. As the reaction progressed, some bacterial cells died or were inactivated; confocal laser scanning microscopy showed that bacterial survival was higher in the HA-hematite {001} treatments than in the HA-hematite {100} treatments after bioreduction. Spectroscopic analysis revealed that facet-dependent binding was primarily realized by surface complexation of carboxyl functional groups with structural Fe atoms, and that the binding order of HA functional groups and hematite was affected by the exposed facets. The exposed facets of hematite could influence the electrochemical properties and activity of bacteria, as well as the binding of bacteria and Fe oxides in the presence of OM, thereby governing the extracellular electron transfer and concomitant bioreduction of Fe (hydr)oxides. These results provide new insights into the interfacial reactions between OM and facet-dependent Fe oxides in anoxic, OM-rich soil and sediment environments.

Sulfammox forwarding thiosulfate-driven denitrification and anammox process for nitrogen removal

The coupled process of thiosulfate-driven denitrification (NO₃^-→NO₂^-) and Anammox (TDDA) was a promising process for the treatment of wastewater containing NH₄⁺-N and NO₃^--N. However, the high concentration of SO₄^2- production limited its application, which needs to be alleviated by an economical and effective way to promote the application of TDDA process. In this study, TDDA process was started in a relatively short time by stepwise replacing nitrite with nitrate and operated continuously for 146 days. Results presented that the average total nitrogen removal efficiency of 82.18% can be acquired at a high loading rate of 1.98 kg N/(m³·d) with maximum nitrogen removal efficiency up to 87.04%. It was observed that the increase of S/N ratio improved the denitrification efficiency and slightly inhibit the Anammox process. Batch tests showed that Sulfammox process appeared in TDDA process under certain conditions, further contributing 2.59% nitrogen removal and 10.46% sulfur removal (14.42 mg/L NH₄⁺-N and 37.68 mg/L SO₄^2--S were removed). This finding was mainly attributed to the reduction of sulfate in TDDA system to elemental S⁰ or HS^-, which subsequently was used as an electron donor to realize the recycling of sulfate (SO₄^2--S) pollutants and promote the sulfur-nitrogen (S-N) cycle. High-throughput analysis displayed that Anammox bacteria (Candidatus_Kuenenia), Sulfur-oxidizing bacteria (Thiobacillus) with relatively high abundance of 5.37%, 7.74%, respectively, guaranteeing the excellent nitrogen and sulfate removal performance in the reactor. The enrichment of phyla Chloroflexi (31.79%), Proteobacteria (31.82%), class Ignavibacteriales (10.55%), genus Planctomycetes (13.57%) further verified the exitence of Sulfammox process in the TDDA reactor. This study provides a new perspective for the practical application of TDDA in terms of reducing the production of high concentration SO₄^2- and saving operational cost and strengthening deeply nitrogen removal.

Photochemical transformation mechanisms of dissolved organic matters (DOM) derived from different bio-stabilization sludge

Bio-stabilization sludge contains numerous dissolved organic matter (DOM) that could enter aquatic environments by soil leaching after sludge land use, but a clear understanding of their photochemical behavior is still lacking. In this study, we systematically investigated the photoactivity and photochemical transformation of aerobic composting sludge-derived DOM (DOM_ACS) and anaerobic digestion sludge-derived DOM (DOM_ADS) by using multispectral analysis coupled with Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS). The results indicated that DOM_ACS and DOM_ADS have a higher proportion of highly unsaturated and phenolic compounds (HuPh)with high DBE_wa, but the different polyphenols (Polyph) abundance of them, causing the different photoactivity between them. DOM_ACS had much higher apparent quantum yields (AQY) for triplet states of dissolved natural organic matter (³DOM*) and hydroxyl radical (•OH) but slightly lower AQY for singlet oxygen (¹O₂) than DOM_ADS under simulated sunlight conditions. As the irradiation time increased, HuPh and Polyph (associated with humic-like substances) contained in DOM_ACS (DOM_ADS) decreased by 12.0% (14.1%) and 3.0% (0.2%), respectively, with concurrent decrease in average molecular weight and aromaticity moieties, resulting in more generation of aliphatic compounds. Furthermore, based on 27 types of photochemical transformation reactions, DOM_ACS containing higher fractions of O_10-15 and N_1-3O_y class preferred dealkyl group and carboxylic acid reactions, whereas DOM_ADS composed of more N₄O_y and S₂O_y fragments preferred oxygen addition and anmine reactions. Consequently, photochemical transformations reduced the Cd (II) ion activity in the presence of DOM_ACS (DOM_ADS). This study is believed to unveil the photochemical transformation of bio-stabilization sludge-derived DOM and its impact on pollutants' fate in the aquatic environment.

Promotion of nitrogen removal in a zero-valent iron-mediated nitrogen removal system operated in co-substrate mode

In this study, the performance and mechanism of nitrogen removal were investigated in a zero-valent iron-mediated nitrogen removal system operated in co-substrate mode with sodium acetate as the organic carbon source. The results showed that the additional organic matter had the capacity to promote NH4+-N and total inorganic nitrogen (TIN) removal with efficiencies of 91.09% and 84.10%, and increases of 60.06% and 75.32% compared with the control group, respectively. The organic matter also stimulated the production of extracellular polymer substances that reduced the passivation and toxicity of iron to microorganisms. The ammonia oxidation activity was 2.5 times higher than that in the control group, and the anammonia oxidation activity and denitrification activity were substantially higher than in the control group with TIN removal efficiencies of 1.02 and 1.19 mgN/(gVSS·d), respectively. In addition, the organic matter increased the enrichment of the heterotrophic denitrification bacterium Diaphorobacter and facultative iron salt-based bacterium Dechloromonas.

Iron Compounds in Anaerobic Degradation of Petroleum Hydrocarbons: A Review

Waste and wastewater containing hydrocarbons are produced worldwide by various oil-based industries, whose activities also contribute to the occurrence of oil spills throughout the globe, causing severe environmental contamination. Anaerobic microorganisms with the ability to biodegrade petroleum hydrocarbons are important in the treatment of contaminated matrices, both in situ in deep subsurfaces, or ex situ in bioreactors. In the latter, part of the energetic value of these compounds can be recovered in the form of biogas. Anaerobic degradation of petroleum hydrocarbons can be improved by various iron compounds, but different iron species exert distinct effects. For example, Fe(III) can be used as an electron acceptor in microbial hydrocarbon degradation, zero-valent iron can donate electrons for enhanced methanogenesis, and conductive iron oxides may facilitate electron transfers in methanogenic processes. Iron compounds can also act as hydrocarbon adsorbents, or be involved in secondary abiotic reactions, overall promoting hydrocarbon biodegradation. These multiple roles of iron are comprehensively reviewed in this paper and linked to key functional microorganisms involved in these processes, to the underlying mechanisms, and to the main influential factors. Recent research progress, future perspectives, and remaining challenges on the application of iron-assisted anaerobic hydrocarbon degradation are highlighted.

Ferrihydrite transformations in flooded paddy soils: rates, pathways, and product spatial distributions

Complex interactions between redox-driven element cycles in soils influence iron mineral transformation processes. The rates and pathways of iron mineral transformation processes have been studied intensely in model systems such as mixed suspensions, but transformation in complex heterogeneous porous media is not well understood. Here, mesh bags containing 0.5 g of ferrihydrite were incubated in five water-saturated paddy soils with contrasting microbial iron-reduction potential for up to twelve weeks. Using X-ray diffraction analysis, we show near-complete transformation of the ferrihydrite to lepidocrocite and goethite within six weeks in the soil with the highest iron(II) release, and slower transformation with higher ratios of goethite to lepidocrocite in soils with lower iron(II) release. In the least reduced soil, no mineral transformations were observed. In soils where ferrihydrite transformation occurred, the transformation rate was one to three orders of magnitude slower than transformation in comparable mixed-suspension studies. To interpret the spatial distribution of ferrihydrite and its transformation products, we developed a novel application of confocal micro-Raman spectroscopy in which we identified and mapped minerals on selected cross sections of mesh bag contents. After two weeks of flooded incubation, ferrihydrite was still abundant in the core of some mesh bags, and as a rim at the mineral-soil interface. The reacted outer core contained unevenly mixed ferrihydrite, goethite and lepidocrocite on the micrometre scale. The slower rate of transformation and uneven distribution of product minerals highlight the influence of biogeochemically complex matrices and diffusion processes on the transformation of minerals, and the importance of studying iron mineral transformation in environmental media.

Sustainable removal of soil arsenic by naturally-formed iron oxides on plastic tubes

Arsenic (As) pollution in paddy fields is a major threat to rice safety. Existing As remediation techniques are costly, require external chemical addition and degrade soil properties. Here, we report the use of plastic tubes as a recyclable tool to precisely extract As from contaminated soils. Following insertion into flooded paddy soils, polyethylene tube walls were covered by thin but massive Fe coatings of 76.9-367 mg Fe m^-2 in 2 weeks, which adsorbed significant amounts of As. The formation of tube-wall Fe oxides was driven by local Fe-oxidizing bacteria with oxygen produced by oxygenic phototrophs (e.g., Cyanobacteria) or diffused from air through the tube wall. The tubes with As-bound Fe oxides can be easily separated from soil and then washed and reused. We tested the As removal efficiency in a pot experiment to remove As from ~ 20 cm depth/40 kg soils in a 2-year experiment and achieved an overall removal efficiency of 152 mg As m^-2 soil year^-1, comparable to phytoremediation with the As hyperaccumulator Pteris vittata. The cost of Fe hooks was estimated at 8325 RMB ha^-1 year^-1, and the profit of growing rice (around 16080 RMB ha^-1 year^-1 can be still maintained. The As accumulated in rice tissues was markedly decreased in the treatment (>11.1 %). This work provides a low-cost and sustainable soil remediation method for the targeted removal of As from soils and a useful tool for the study and management of the biogeochemical Fe cycle in paddy soils.

Insights into phenanthrene attenuation by hydroxyl radicals from reduced iron-bearing mineral oxygenation

The oxygenation of Fe(II)-bearing minerals for hydroxyl radicals (HO^•) formation and contaminant attenuation receive increasing attention, while the mechanisms for specific Fe(II) species in manipulating HO^• formation and contaminant attenuation are unclear. Herein, a total of four Fe(III)-bearing minerals were applied in the reduction-oxygenation processes to produce HO^•. Results showed that the total HO^• generated from the Fe-(oxyhydr)oxides were significantly higher than those from the Fe-silicates, with the order of goethite and hematite (~1500 μmol kg^-1) > Fe-montmorillonite (~550 μmol kg^-1) > chlorite (~120 μmol kg^-1). The HO^• formation was largely hinged on the reactive Fe(II) species, i.e., the surface-adsorbed/low-crystalline Fe(II) in the Fe-bearing minerals. For the co-incubation of minerals and phenanthrene, the concentrations of phenanthrene decreased from the initial 3.0 mg L^-1 to 0.7 mg L^-1 and 1.9 mg L^-1 for Fe-montmorillonite and goethite, respectively, suggesting the HO^• mediated by the Fe-montmorillonite was more conducive for phenanthrene attenuation. The goethite tended to promote the formation of free HO^•, while the Fe-montmorillonite with interlayer structure can provide attachment sites for the surface-adsorbed/low-crystalline Fe(II), resulting in high potential for surface-bound HO^• formation and phenanthrene attenuation. This study highlights the importance of Fe-bearing minerals in manipulating HO^• formation, providing new insight into the removal of contaminants in ecosystems.

Disentangling the size-dependent redox reactivity of iron oxides using thermodynamic relationships

Nanoparticles often exhibit size-dependent redox reactivities, with smaller particles being more reactive in some cases, while less reactive in others. Predicting trends between redox reaction rates and particle sizes is often complicated because a particle's dimensions can simultaneously influence its aggregation state, reactive surface area, and thermodynamic properties. Here, we tested the hypothesis that interfacial redox reaction rates for nanoparticles with different sizes can be described with a single linear free-energy relationship (LFER) if size-dependent reactive surface areas and thermodynamic properties are properly considered. We tested this hypothesis using a well-known interfacial redox reaction: the reduction of nitrobenzene to aniline by iron-oxide-bound Fe²⁺. We measured the reduction potential (E_H) values of nano-particulate hematite suspensions containing aqueous Fe²⁺ using mediated potentiometry and characterized the size and aggregation states of hematite samples at circumneutral pH values. We used the measured E_H values to calculate surface energies and reactive surface areas using thermodynamic relationships. Nitrobenzene reduction rates were lower for smaller particles, despite their larger surface areas, due to their higher surface energies. When differences in surface areas and thermodynamic properties were considered, nitrobenzene reduction kinetics for all particle sizes was described with a LFER. Our results demonstrate that when Fe²⁺ serves as a reductant, an antagonistic effect exists, with smaller particles having larger reactive surface areas but also more positive reduction potentials. When Fe³⁺ serves as an oxidant, however, these two effects work in concert, which likely explains past discrepancies regarding how iron oxide particle sizes influence redox reaction rates.

Characteristics of soil carbon emissions and bacterial community composition in peatlands at different stages of vegetation succession

Microorganisms are important components of soil ecosystems and play an important role in material cycles. Northern peatlands are important ecosystems in middle-high latitude regions. In peatlands, different vegetation successions occur with changes in groundwater levels. The overall carbon emission of peat bogs is related to the carbon stability of the surrounding environment. Unraveling the assembly and distribution of bacterial communities at different succession stages in peatland is essential to understanding the soil nutrient cycle. In this study, we investigated the characteristics of soil carbon emissions and the composition of subsurface microorganisms under six different succession stages. The highest carbon emission was observed in mossy peatlands, and their soil enzyme activity was closely related to the aboveground vegetation cover type. The succession pattern of ground vegetation was the main driver of soil microorganisms. The abundance of the dominant Proteobacteria decreased with increasing soil depth, while the opposite trend was observed for Chloroflexi. Furthermore, the community structure of microorganisms became progressively simpler and looser as soil water content decreased. The bacterial alpha diversity was driven by soil dissolved organic carbon and Fe, and the beta diversity was driven mainly by soil water content. The bacteria presented a random distribution in a nutrient-rich soil environment and shifted to deterministic distribution with decreasing water and nutrient contents. The balance between taxonomic diversity and dispersal limitation mediates species coexistence in the soil microbiome. This study provides new insights into the soil environment at different stages of succession in peatlands.

Fe-Rich Fossil Vents as Mars Analog Samples: Identification of Extinct Chimneys in Miocene Marine Sediments Using Raman Spectroscopy, X-Ray Diffraction, and Scanning Electron Microscopy-Energy Dispersive X-Ray Spectroscopy

On Earth, the circulation of Fe-rich fluids in hydrothermal environments leads to characteristic iron mineral deposits, reflecting the pH and redox chemical conditions of the hydrothermal system, and is often associated with chemotroph microorganisms capable of deriving energy from chemical gradients. On Mars, iron-rich hydrothermal sites are considered to be potentially important astrobiological targets for searching evidence of life during exploration missions, such as the Mars 2020 and the ExoMars 2022 missions. In this study, an extinct hydrothermal chimney from the Jaroso hydrothermal system (SE Spain), considered an interesting geodynamic and mineralogical terrestrial analog for Mars, was analyzed using Raman spectroscopy, X-ray diffraction, and scanning electron microscopy coupled with energy dispersive X-ray spectroscopy. The sample consists of a fossil vent in a Miocene shallow-marine sedimentary deposit composed of a marl substrate, an iron-rich chimney pipe, and a central space filled with backfilling deposits and vent condensates. The iron crust is particularly striking due to the combined presence of molecular and morphological indications of a microbial colonization, including mineral microstructures (e.g., stalks, filaments), iron oxyhydroxide phases (altered goethite, ferrihydrite), and organic signatures (carotenoids, organopolymers). The clear identification of pigments by resonance Raman spectroscopy and the preservation of organics in association with iron oxyhydroxides by Raman microimaging demonstrate that the iron crust was indeed colonized by microbial communities. These analyses confirm that Raman spectroscopy is a powerful tool for documenting the habitability of such historical hydrothermal environments. Finally, based on the results obtained, we propose that the ancient iron-rich hydrothermal pipes should be recognized as singular terrestrial Mars analog specimens to support the preparatory work for robotic in situ exploration missions to Mars, as well as during the subsequent interpretation of data returned by those missions.

The influence of shellfish farming on sedimentary organic carbon mineralization: A case study in a coastal scallop farming area of Yantai, China

This study quantified the rate and relative contribution of each sedimentary organic carbon (OC) mineralization pathway in the Yantai coastal area. The results showed that scallop farming activities with raft-breeding facilities led to increased accumulation of OC and reactive Fe(III), which in turn promoted OC aerobic mineralization, Fe reduction, and competitively inhibited sulfate reduction. In the scallop farming area (SFA), O₂ reduction, dissimilatory Fe reduction, and sulfate reduction contributed 32.17 %, 27.77 %, and 30.18 % of the total OC mineralization, 1.6 times, 1.2 times, and 0.6 times those of the non-farming area, respectively. Nevertheless, scallop harvesting and resuspension by water currents will increase the short-term risk of dissolved inorganic carbon accumulation in the water column. The OC budget showed that the Yantai coastal area exhibited more OC mineralization than storage, with only 5.0-7.2 % of the net settled OC being permanently buried in the sediment.

Significant Contribution of Solid Organic Matter for Hydroxyl Radical Production during Oxygenation

Dark formation of hydroxyl radicals (•OH) from soil/sediment oxygenation has been increasingly reported, and solid Fe(II) is considered as the main electron donor for O₂ activation. However, the role of solid organic matter (SOM) in •OH production is not clear, although it represents an important electron pool in the subsurface. In this study, •OH production from oxygenation of reduced solid humic acid (HA_red) was investigated at pH 7.0. •OH production is linearly correlated with the electrons released from HA_red suspension. Solid HA_red transferred electrons rapidly to O₂ via the surface-reduced moieties (hydroquinone groups), which was fueled by the slow electron transfer from the reduced moieties inside solid HA. Cycling of dissolved HA between oxidized and reduced states could mediate the electron transfer from solid HA_red to O₂ for •OH production enhancement. Modeling results predicted that reduced SOM played an important or even dominant role in •OH production for the soils and sediments possessing high molar ratios of SOC/Fe(II) (e.g., >39). The significant contribution of SOM was further validated by the modeling results for oxygenation of 88 soils/sediments in the literature. Therefore, reduced SOM should be considered carefully to comprehensively understand •OH production in SOM-rich subsurface environments.

A critical review of exogenous additives for improving the anammox process

Anammox achieves chemoautotrophic nitrogen removal under anaerobic and anoxic conditions and is a low-carbon wastewater biological nitrogen removal process with broad application potential. However, the physiological limitations of AnAOB often cause problems in engineering applications, such as a long start-up time, unstable operation, easily inhibited reactions, and difficulty in long-term strain preservation. Exogenous additives have been considered an alternative strategy to address these issues by retaining microbes, shortening the doubling time of AnAOB and improving functional enzyme activity. This paper reviews the role of carriers, biochar, intermediates, metal ions, reaction substrates, redox buffers, cryoprotectants and organics in optimizing anammox. The pathways and mechanisms of exogenous additives, which are explored to solve problems, are systematically summarized and analyzed in this article according to operational performance, functional enzyme activity, and microbial abundance to provide helpful information for the engineering application of anammox.

Spatial distribution of soil iron across different plant communities along a hydrological gradient in the Yellow River Estuary wetland

Iron is an important element and its biogeochemical processes are vital to the matter and energy cycles of wetland ecosystems. Hydrology greatly controls characteristics of soil property and plant community in wetlands, which can regulate the behavior of iron and its oxides. However, it remains unclear how the spatial distribution of iron and its forms in estuarine wetlands responses to hydrological conditions. Five typical plant communities along a naturally hydrological gradient in the Yellow River Estuary wetland, including Phragmites australis in freshwater marsh (FPA), Phragmites australis in salt marsh (SPA), Tamarix chinensis in salt marsh (TC), Suaeda salsa in salt marsh (SS) and Spartina alterniflora in salt marsh (SA), as sites to collect soil samples. The total iron (FeT) and three iron oxides (complexed iron, Fep; amorphous iron, Feo; free iron, Fed) in samples were determined to clarify the spatial distribution of iron and explore its impact factors. The mean contents of FeT, Fep, Feo and Fed were 28079.4, 152.0, 617.2 and 8285.3 mg⋅kg–1 of soil at 0–40 cm depth in the different sites, respectively. The means were significantly different across communities along the hydrological gradient, with the higher values for SA on the upper intertidal zone and for SPA on the lower intertidal zone, respectively. Iron and its forms were positively correlated with the total organic carbon (TOC), dissolved organic carbon (DOC), total nitrogen (TN) and clay, and negatively correlated with electrical conductivity (EC). The indexes of iron oxides (Fep/Fed, Feo/Fed and Fed/FeT) were also different across communities, with a higher value for SA, which were positively correlated with soil water content (WC) and TOC. The results indicate that a variety of plant community and soil property derived from the difference of hydrology might result in a spatial heterogeneity of iron in estuarine wetlands.

Machine learning-based inverse design for electrochemically controlled microscopic gradients of O2 and H2O2

In microbiology, extracellular oxygen (O₂) and reactive oxygen species (ROS) are spatiotemporally heterogenous, ubiquitously, at macroscopic level. Such spatiotemporal heterogeneities are critical to microorganisms, yet a well-defined method of studying such heterogenous microenvironments is lacking. This work develops a machine learning–based inverse design strategy that builds an electrochemical platform for achieving spatiotemporal control of O₂ and ROS microenvironments relevant to microbiology. The inverse design strategy not only demonstrates the power of machine learning to design concentration profiles in electrochemistry but also accelerates the development of custom microenvironments for specific microbial systems and allows researchers to better study how microenvironments affect microorganisms in myriads of environmental, biomedical, and sustainability-related applications.

A fundamental understanding of extracellular microenvironments of O₂ and reactive oxygen species (ROS) such as H₂O₂, ubiquitous in microbiology, demands high-throughput methods of mimicking, controlling, and perturbing gradients of O₂ and H₂O₂ at microscopic scale with high spatiotemporal precision. However, there is a paucity of high-throughput strategies of microenvironment design, and it remains challenging to achieve O₂ and H₂O₂ heterogeneities with microbiologically desirable spatiotemporal resolutions. Here, we report the inverse design, based on machine learning (ML), of electrochemically generated microscopic O₂ and H₂O₂ profiles relevant for microbiology. Microwire arrays with suitably designed electrochemical catalysts enable the independent control of O₂ and H₂O₂ profiles with spatial resolution of ∼10¹ μm and temporal resolution of ∼10° s. Neural networks aided by data augmentation inversely design the experimental conditions needed for targeted O₂ and H₂O₂ microenvironments while being two orders of magnitude faster than experimental explorations. Interfacing ML-based inverse design with electrochemically controlled concentration heterogeneity creates a viable fast-response platform toward better understanding the extracellular space with desirable spatiotemporal control.

Microbes team with nanoscale zero-valent iron: A robust route for degradation of recalcitrant pollutants

Integrating nanoscale zero-valent iron (nZVI) with biological treatment processes holds the promise of inheriting significant advantages from both environmental nano- and bio-technologies. nZVI and microbes can perform in coalition in direct contact and act simultaneously, or be maintained in separate reactors and operated sequentially. Both modes can generate enhanced performance for wastewater treatment and environmental remediation. nZVI scavenges and eliminates toxic metals, and enhances biodegradability of some recalcitrant contaminants while bioprocesses serve to mineralize organic compounds and further remove impurities from wastewater. This has been demonstrated in a number of recent works that nZVI can substantially augment the performance of conventional biological treatment for wastewaters from textile and nonferrous metal industries. Our recent laboratory and field tests show that COD of the industrial effluents can be reduced to a record-low of 50 ppm. Recent literature on the theory and applications of the nZVI-bio system is highlighted in this mini review.

Silicon enhances abundances of reducing microbes in rhizoplane and decreases arsenite uptake by rice (Oryza sativa L.)

Although silicon (Si) transporters-mediated uptake of arsenic (As) by rice roots is well-documented, how Si influences As behaviors in rhizosphere and rhizoplane before As entry into roots is still unclear. Here we used three rice genotypes to explore the effect of silicic acid on the root uptake of As as impacted by chemical and microbial changes in bulk soil, rhizosphere, rhizoplane and endosphere. The results show that exogenous Si decreased root arsenite [As(III)] absorption, which was attributed to Si-mediated alteration of traits in chemical plaque and microbial films on the rhizoplane. The pH, Eh, As and Fe in the porewater were not influenced by Si. However, Si enhanced the concentrations of As(III) (16-49%) and Fe (15-80%) in the rhizoplane while decreasing As(III) concentrations in the roots (19-39%) and grains (22-29%). The diversities and richness of microbes in soils and plants were not affected by Si. The microbial connections were negatively influenced by Si in bulk and rhizosphere soils, but positively impacted in rhizoplane and endosphere. Both the abundance of reducing microbes, Anaeromyxobacter and Geobacteraceae, and the level of As(III) and Fe in rhizoplane were significantly increased by the addition of Si, thereby restraining As(III) from uptake into roots. This study provides new insights into the microbial mechanisms of Si-mediated As uptake by rice.

Pyrogenic carbon facilitated microbial extracellular electron transfer in electrogenic granular sludge via geobattery mechanism

Electroactive pyrogenic carbon (PC) is an intriguing candidate for realizing the ambitious goals of large-scale applications of microbial electrochemical technologies (METs). In this study, PC was employed to promote the extracellular electron transfer (EET) within the electrogenic granular sludge (EGS) by acting as an electron conduit. The pecan shell-derived PC prepared at three temperatures (600, 800, and 1000 ˚C) contained rich oxygenated-functional moieties (mainly quinone) on the surface, endowing a good electron transfer capacity (EEC). The maximum current density (J_max) of EGS with PC amendment outperformed the control EGS without PC amendment, i.e., 100-132 times higher than J_amx of EGS in the absence of PC. Among various pyrolysis temperatures, the PC derived from 600 ˚C produced the highest J_max (0.40 A/ m²), 0.67-times, and 0.33-times higher than that of PC derived from 800 and 1000 ˚C, respectively. Furthermore, more polysaccharides were secreted in extracellular polymeric substance with PC amendments. The microbial community analysis demonstrated that the PC favored the growth of electroactive bacteria over methanogens. The metabolic pathway revealed that PC induced more functional enzymes in the quinone biosynthesis and cytochrome c and heme synthesis, resulting in an enhanced EET. The EEC of PC was responsible for the EET enhancement effect via PC acting as a geobattery to wire up the EGS and electrodes. Overall, this study pinpoints the finding of PC role in a mixed electroactive biofilm and provides a wide scenario of the PC applications in MET at large scales.

Microbial community mediates hydroxyl radical production in soil slurries by iron redox transformation

The generation of reactive oxygen species (ROS) mediated by minerals and/or microorganisms plays a vital but underappreciated role in affecting carbon and nutrient cycles at soil-water interfaces. It is currently unknown which interactions between microbial communities and iron (Fe) minerals produce hydroxyl radical (HO^•), which is the strongest oxidant among ROS. Using a series of well-controlled anoxic incubations of soil slurries, we demonstrated that interactions between microbial communities and Fe minerals synergistically drove HO^• production (up to ∼100 nM after 21-day incubation). Microorganisms drove HO^• generation in anoxic environments predominantly by modulating iron redox transformation that was more prominent than direct production of ROS by microorganisms. Among the microbial communities, Geobacter, Paucimonas, Rhodocyclaceae_K82, and Desulfotomaculum were the key genera strongly affecting HO^• production. In manured soils, the former two species had higher abundances and were crucial for HO^• production. In contrast, the latter two species were mainly abundant and important in soils with mineral fertilizers. Our study suggests that abundant highly reactive oxidant HO^• can be generated in anoxic environments and the microbial community-mediated redox transformations of iron (oxyhydr)oxides may be responsible for the HO^• production. These findings shed light on the microbial generation of HO^• in fluctuating redox environments and on consequences for global C and nutrient cycling.

Natural Magnetite Minerals Enhance 1,2-Dichloroethane Reductive Dechlorination

Contamination of soil and groundwater by chlorinated solvents is an environmental issue of primary concern. Recently, electrically conductive iron particles have been proposed as a novel approach to accelerate anaerobic bioremediation processes. In fact, it was demonstrated that conductive particles facilitate the exchange of electrons between microorganisms via Direct Interspecies Electron Transfer (DIET) processes, thus enhancing the pollutant-degrading potential of the microbial community. However, the use of natural minerals in this context has not been reported so far. In this study, we applied, for the first time, natural magnetite and hematite to accelerate the reductive dechlorination of 1,2-dichloroethane by an enrichment culture in lab-scale anaerobic microcosms. After four feeding cycles, low magnetite-amended microcosms (13 mg/L) yielded the highest rate of 1,2-DCA reductive dechlorination and reduced methanogenic activity. By contrast, hematite did not display any apparent stimulatory effect. Surprisingly, in the presence of higher amounts of iron oxides, a weaker effect was obtained, probably because iron(III) present in the minerals competed for the electrons necessary for reductive dechlorination. For all microcosms, the concentration of the toxic byproduct vinyl chloride was negligible throughout the whole study. The SEM/EDS analysis confirmed the close interaction between the conductive iron oxide particles and the dechlorinating bacteria. This work opens the possibility of using natural conductive minerals for bioremediation applications as well as shedding light on the previously unrecognized role of such minerals in contaminated ecosystems.

Diel Fluctuation of Extracellular Reactive Oxygen Species Production in the Rhizosphere of Rice

Reactive oxygen species (ROS) are ubiquitous on earth and drive numerous redox-centered biogeochemical processes. The rhizosphere of wetland plants is a highly dynamic interface for the exchange of oxygen and electrons, presenting the basis of the precedent for ROS production, yet whether extracellular ROS are produced in the rhizosphere remains unknown. Here, we designed a microfluidic chip setup to detect in-situ ROS productions in the rhizosphere of rice with spatial and temporal resolutions. Fluorescence imaging clearly displayed the hot spots of ROS generation in the rhizosphere. The formation concentration of the hydroxyl radical (^•OH, a representative ROS, 10^-6 M) was comparable to those by the classical photochemical route (10^-6-10^-7 M) in aquatic systems, therefore highlighting the rhizosphere as an unrecognized hotspot for ROS production. Moreover, the rhizosphere ROS production exhibits diel fluctuation, which simultaneously fluctuated with dissolved oxygen, redox potential, and pH, all driven by radial oxygen loss near the root in the daytime. The production and diel fluctuation of ROS were confirmed in the rhizosphere of rice root incubated in natural soils. We demonstrated that the extracellular ROS production was triggered by the interplay between root-released oxygen and microbial respiration released extracellular electrons, while iron mineral and organic matter might play key roles in storing and shuttling electrons. Our results highlight the rhizosphere as a widespread but previously unappreciated hotspot for ROS production, which may affect pollutant redox dynamics and biogeochemical processes in soils.

Biogeochemistry of Iron Enrichment in Groundwater: An Indicator of Environmental Pollution and Its Management

Iron (Fe) is one of the most biochemically active and widely distributed elements and one of the most important elements for biota and human activities. Fe plays important roles in biological and chemical processes. Fe redox reactions in groundwater have been attracting increasing attention in the geochemistry and biogeochemistry fields. This study reviews recent research into Fe redox reactions and biogeochemical Fe enrichment processes, including reduction, biotic and abiotic oxidation, adsorption, and precipitation in groundwater. Fe biogeochemistry in groundwater and the water-bearing medium (aquifer) often involves transformation between Fe(II) and Fe(III) caused by the biochemical conditions of the groundwater system. Human activities and anthropogenic pollutants strongly affect these conditions. Generally speaking, acidification, anoxia and warming of groundwater environments, as well as the inputs of reducing pollutants, are beneficial to the migration of Fe into groundwater (Fe(III)→Fe(II)); conversely, it is beneficial to the migration of it into the media (Fe(II)→Fe(III)). This study describes recent progress and breakthroughs and assesses the biogeochemistry of Fe enrichment in groundwater, factors controlling Fe reactivity, and Fe biogeochemistry effects on the environment. This study also describes the implications of Fe biogeochemistry for managing Fe in groundwater, including the importance of Fe in groundwater monitoring and evaluation, and early groundwater pollution warnings.

Vertical stratification of microbial communities and isotope geochemistry tie groundwater denitrification to sampling location within a nitrate-contaminated aquifer

Nitrate pollution is a major threat to groundwater quality in agricultural areas. Natural attenuation of nitrate in contaminated aquifers is mediated by denitrifying microbial populations in anoxic environments. Vertical distribution of denitrifying microbial communities in aquifers is greatly influenced by groundwater redox conditions, local hydrogeological parameters, and seasonal variability in groundwater flow and recharge. In this study, we investigated groundwater geochemistry and the composition of bacterial and archaeal communities with increasing depth in a shallow nitrate-contaminated aquifer in British Columbia, Canada. High-resolution passive diffusion sampling was conducted to collect groundwater at 10-cm intervals from 4 to 20 m below ground surface (mbgs) in the aquifer. Geochemical analyses of major ions indicated a general shift in the groundwater chemistry below 16 mbgs including decreasing chloride concentrations that suggest two-end member mixing of shallow and deep groundwater with different chemistries. A redoxcline was further observed within a 2 m transition zone at 18-20 mbgs characterized by sharp declines in nitrate concentrations and increases in sulfate and total inorganic carbon. Excursions in δ¹⁵N-NO₃^- and δ¹⁸O-NO₃^- in the same depth interval are consistent with denitrification, and a concomitant decrease in δ³⁴S-SO₄^2- suggested that denitrification was coupled to sulfide or sulfur oxidation. Microbial communities within this depth interval were significantly dissimilar to those above and below, featuring putative lithotrophic denitrifying bacteria belonging to the genera Sulfurifustis, Sulfuritalea and Sulfuricella. These lineages were detected in greatest abundance at 19 mbgs while the abundances of putative heterotrophic sulfate-reducing bacteria belonging to the genus Desulfosporosinus were greatest at 20 mbgs. In addition to help distinguish denitrification from mixing-induced changes in groundwater chemistry, the above observed vertical stratification of the microbial key players connects nitrate removal to the locations of the aquifer sampled.

Marine Colloids Promote the Adaptation of Diatoms to Nitrate Contamination by Directional Electron Transfer

Nitrate contamination from human activities (e.g., domestic pollution, livestock breeding, and fertilizer application) threatens marine ecosystems and net primary productivity. As the main component of primary productivity, diatoms can adapt to high nitrate environments, but the mechanism is unclear. We found that electron transfer from marine colloids to diatoms enhances nitrogen uptake and assimilation under visible-light irradiation, providing a new pathway for nitrogen adaptation. Under irradiation, marine colloids exhibit semiconductor properties (e.g., the separation of electron-hole pairs) and can trigger the generation of free electrons and singlet oxygen. They also exhibit electron acceptor and donor properties, with the former being stronger than the latter, reacting with polysaccharides in extracellular polymeric substances (EPSs) under high nitrogen stress, enhancing the elasticity and permeability of cells, and promoting nitrogen assimilation and electron transfer to marine diatom EPSs. Electron transfer promotes extracellular-to-intracellular nitrate transport by upregulating membrane nitrate transporters and nitrate reductase. The upregulation of anion transport genes and unsaturated fatty acids contributes to nitrogen assimilation. We estimate that colloids may increase the nitrate uptake efficiency of marine diatoms by 10.5-82.2%. These findings reveal a mechanism by which diatoms adapt to nitrate contamination and indicate a low-cost strategy to control marine pollution.

Salinity Impact on Composition and Activity of Nitrate-Reducing Fe(II)-Oxidizing Microorganisms in Saline Lakes

Nitrate-reducing Fe(II)-oxidizing (NRFeOx) microorganisms contribute to nitrogen, carbon, and iron cycling in freshwater and marine ecosystems. However, NRFeOx microorganisms have not been investigated in hypersaline lakes, and their identity, as well as their activity in response to salinity, is unknown. In this study, we combined cultivation-based most probable number (MPN) counts with Illumina MiSeq sequencing to analyze the abundance and community compositions of NRFeOx microorganisms enriched from five lake sediments with different salinities (ranging from 0.67 g/L to 346 g/L). MPN results showed that the abundance of NRFeOx microorganisms significantly (P < 0.05) decreased with increasing lake salinity, from 7.55 × 10³ to 8.09 cells/g dry sediment. The community composition of the NRFeOx enrichment cultures obtained from the MPNs differed distinctly among the five lakes and clustered with lake salinity. Two stable enrichment cultures, named FeN-EHL and FeN-CKL, were obtained from microcosm incubations of sediment from freshwater Lake Erhai and hypersaline Lake Chaka. The culture FeN-EHL was dominated by genus Gallionella (68.4%), while the culture FeN-CKL was dominated by genus Marinobacter (71.2%), with the former growing autotrophically and the latter requiring an additional organic substrate (acetate) and Fe(II) oxidation, caused to a large extent by chemodenitrification [reaction of nitrite with Fe(II)]. Short-range ordered Fe(III) (oxyhydr)oxides were the product of Fe(II) oxidation, and the cells were partially attached to or encrusted by the formed iron minerals in both cultures. In summary, different types of interactions between Fe(II) and nitrate-reducing bacteria may exist in freshwater and hypersaline lakes, i.e., autotrophic NRFeOx and chemodenitrification in freshwater and hypersaline environments, respectively. IMPORTANCE NRFeOx microorganisms are globally distributed in various types of environments and play a vital role in iron transformation and nitrate and heavy metal removal. However, most known NRFeOx microorganisms were isolated from freshwater and marine environments, while their identity and activity under hypersaline conditions remain unknown. Here, we demonstrated that salinity may affect the abundance, identity, and nutrition modes of NRFeOx microorganisms. Autotrophy was only detectable in a freshwater lake but not in the saline lake investigated. We enriched a mixotrophic culture capable of nitrate-reducing Fe(II) oxidation from hypersaline lake sediments. However, Fe(II) oxidation was probably caused by abiotic nitrite reduction (chemodenitrification) rather than by a biologically mediated process. Consequently, our study suggests that in hypersaline environments, Fe(II) oxidation is largely caused by chemodentrification initiated by nitrite formation by chemoheterotrophic bacteria, and additional experiments are needed to demonstrate whether or to what extent Fe(II) is enzymatically oxidized.

Agent-based modelling of iron cycling bacteria provides a framework for testing alternative environmental conditions and modes of action

Iron-reducing and iron-oxidizing bacteria are of interest in a variety of environmental and industrial applications. Such bacteria often co-occur at oxic-anoxic gradients in aquatic and terrestrial habitats. In this paper, we present the first computational agent-based model of microbial iron cycling, between the anaerobic ferric iron (Fe³⁺)-reducing bacteria Shewanella spp. and the microaerophilic ferrous iron (Fe²⁺)-oxidizing bacteria Sideroxydans spp. By including the key processes of reduction/oxidation, movement, adhesion, Fe²⁺-equilibration and nanoparticle formation, we derive a core model which enables hypothesis testing and prediction for different environmental conditions including temporal cycles of oxic and anoxic conditions. We compared (i) combinations of different Fe³⁺-reducing/Fe²⁺-oxidizing modes of action of the bacteria and (ii) system behaviour for different pH values. We predicted that the beneficial effect of a high number of iron-nanoparticles on the total Fe³⁺ reduction rate of the system is not only due to the faster reduction of these iron-nanoparticles, but also to the nanoparticles' additional capacity to bind Fe²⁺ on their surfaces. Efficient iron-nanoparticle reduction is confined to pH around 6, being twice as high than at pH 7, whereas at pH 5 negligible reduction takes place. Furthermore, in accordance with experimental evidence our model showed that shorter oxic/anoxic periods exhibit a faster increase of total Fe³⁺ reduction rate than longer periods.

Sulfidation of ferric (hydr)oxides and its implication on contaminants transformation: a review

Rapid industrialization and urbanization have resulted in elevated concentrations of contaminants in the groundwaters and subsurface soils, posing a growing hazard to humans and ecosystems. The transformation of most contaminants is closely linked to the mineralogy of ferric (hydr)oxides. Sulfidation of ferric (hydr)oxides is one of the most significant biogeochemical reactions in the anoxic environments, causing reductive dissolution and recrystallization of ferric (hydr)oxides and further affecting the transformation of iron-associated contaminants. This paper provides a comprehensive review on the sulfidation process of ferric (hydr)oxides and the transformation of relevant contaminants. This review presents detailed reaction mechanisms between ferric (hydr)oxides and dissolved sulfide, and elucidates the factors (e.g. crystallinity of ferric (hydr)oxides, the ratio of sulfide concentration to the surface area concentration of ferric (hydr)oxides) that control the formation of surface associated Fe(II), iron sulfide minerals, as well as transformation of secondary minerals. Then, we summarized the transformation mechanisms of a variety of typical environmentally relevant contaminants existing in groundwater and subsurface soils, including heavy metals, metal(loid) oxyanions (arsenic, antimony, chromium), radionuclides (uranium, technetium), organic contaminants and phosphate/nitrate species. The general mechanisms of contaminant transformation involve a combination of release, reduction and re-adsorption/incorporation processes, the specific pathway of which is highly dependent on the properties of the contaminant itself and the extent of sulfidation. Moreover, the challenge of extending our knowledge towards in situ remediation, as well as further research needs are identified.

Co-response of Fe-reducing/oxidizing bacteria and Fe species to the dynamic redox cycles of natural sediment

Fe(III)-reducing bacteria (FRB) and Fe(II)-oxidizing bacteria (FOB) play essential roles in the biogeochemical cycling of iron (Fe). Although the redox transformation of Fe species mediated by FRB/FOB has been extensively studied, the co-responses of FRB and FOB and Fe species transformation in natural sediment under dynamic redox conditions are poorly known. This study explored the variations of potential FRB and FOB abundances and Fe species transformation in natural sediment during successive anoxic-oxic-anoxic-oxic-anoxic cycles. Compared with the pristine sediment sample, the FRB abundance increased 121-793% (initial: (2.6 ± 0.6) × 10⁷ copies/g) in the anoxic stages, while it decreased by 38-64% in the oxic stages. The increase in FRB abundance was ascribed to energy gain of FRB from the reduction of the amorphous Fe(III) (Fe(III)_am) and the crystalline Fe(III) (Fe(III)_cry) to the aqueous Fe(II) (Fe(II)_aq), the adsorbed Fe(II) (Fe(II)_ad) and the amorphous Fe(II) (Fe(II)_am), while the decrease was attributed to the oxidative stress caused by the reactive oxidant produced from the abiotic oxidation of Fe(II)_aq, Fe(II)_ad and Fe(II)_am to Fe(III)_am and Fe(III)_cry. The FOB abundance decreased 38-44% (initial: (5 ± 1.8) × 10⁷ copies/g) in the second and third anoxic stages, while slightly fluctuated in the oxic periods. This observation was contrary to the variation of FRB, which might be attributed to the strong resistance to oxidative stress of FOB and its ability to obtain energy under oxic conditions. Although the functions of FRB and FOB were impaired during anoxic-oxic cycles, the transformation of Fe(II)/Fe(III) was not immediately affected, which may be related to the residual reactivity of dead bacteria and the bio-availability of Fe(II)/Fe(III) species. In the anoxic-oxic alternation process, the iron cycle is mainly the mutual transformation between Fe(II)_aq, Fe(II)_ad, Fe(II)_am and Fe(III)_am, Fe(III)_cry. This finding deepens our understanding of the biogeochemical cycling of Fe in the redox-dynamic environments.