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Verma KK, Song XP, Kumari A, Jagadesh M, Singh SK, Bhatt R, Singh M, Seth CS, Li YR. Climate change adaptation: Challenges for agricultural sustainability. PLANT, CELL & ENVIRONMENT 2025; 48:2522-2533. [PMID: 39136256 DOI: 10.1111/pce.15078] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Revised: 07/02/2024] [Accepted: 07/26/2024] [Indexed: 03/12/2025]
Abstract
Climate change poses a substantial threat to agricultural sustainability globally. Agriculture is a vital component of the gross domestic production of developing countries. The multifaceted impacts of climate change on agriculture, highlighting how extreme weather events such as water stress, heatwaves, erratic rainfall, storms, floods, and emerging pest infestations are disrupting agricultural productivity. The socioeconomic status of farmers is particularly vulnerable to climatic extremes with future projections indicating significant increment in ambient air temperatures and unpredictable, intense rainfall patterns. Agriculture has historically relied on the extensive use of synthetic fertilizers, herbicides, and insecticides, combined with advancements in irrigation and biotechnological approaches to boost productivity. It encompasses a range of practices designed to enhance the resilience of agricultural systems, improve productivity, and reduce greenhouse gas emissions. By adopting climate-smart practices, farmers can better adapt to changing climatic conditions, thereby ensuring more sustainable and secure food production. Furthermore, it identifies key areas for future research, focusing on the development of innovative adaptation and mitigation strategies. These strategies are essential for minimizing the detrimental impacts of climate change on agriculture and for promoting the long-term sustainability of food systems. This article underscores the importance of interdisciplinary approaches and the integration of advanced technologies to address the challenges posed by climate change. By fostering a deeper understanding of these issues to inform policymakers, researchers, and practitioners about effective strategies to safeguard agricultural productivity and food security in the face of changing climate.
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Affiliation(s)
- Krishan K Verma
- Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture and Rural Affairs/Guangxi Key Laboratory of Sugarcane Genetic Improvement, Nanning, Guangxi, China
| | - Xiu-Peng Song
- Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture and Rural Affairs/Guangxi Key Laboratory of Sugarcane Genetic Improvement, Nanning, Guangxi, China
| | - Aradhna Kumari
- College of Agriculture, Jawaharlal Nehru Krishi Vishwa Vidyalaya, Ganj Basoda, Vidisha, Madhya Pradesh, India
| | - M Jagadesh
- Tamil Nadu Agricultural University, Coimbatore, India
| | - Santosh Kumar Singh
- Dr. Rajendra Prasad Central Agricultural University, Pusa, Samastipur, Bihar, India
| | - Rajan Bhatt
- Punjab Agricultural University, Krishi Vigyan Kendra, Amritsar, Punjab, India
| | - Munna Singh
- Department of Botany, University of Lucknow, Lucknow, India
| | | | - Yang-Rui Li
- Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture and Rural Affairs/Guangxi Key Laboratory of Sugarcane Genetic Improvement, Nanning, Guangxi, China
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Arif M, Ilyas M, Adnan M, Kalsoom R, Ren M, Xu R, Li L. Molecular mechanisms and breeding strategies for enhancing wheat resilience to environmental stresses: The role of heat shock proteins and implications for food security. Int J Biol Macromol 2025:142468. [PMID: 40154715 DOI: 10.1016/j.ijbiomac.2025.142468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2025] [Revised: 03/13/2025] [Accepted: 03/22/2025] [Indexed: 04/01/2025]
Abstract
Wheat is a major staple crop that plays a pivotal role in global food security. However, its productivity is increasingly compromised by environmental stresses such as heat, drought, salinity and heavy metal toxicity. The broad understanding of molecular mechanisms responsible for wheat resilience is reviewed, with a particular focus on heat shock proteins (HSPs) as key mediators of stress adjustment. HSPs play the role of molecular chaperones, whereby they stabilize proteins and prevent aggregation and oxidative stress to maintain the homeostatic function of cells in the most extreme conditions. We trained omics technologies such as genomics, transcriptomics, proteomics, and metabolomics to identify genes responsive to stress, thus boosting the breeding approach for better resilience in wheat. Now, genome editing tools such as CRISPR/Cas9 have hastened the development of climate-resilient wheat varieties, complementing traditional breeding strategies. Heavy metal toxicity disturbs the metabolic pathways; however, certain metals are micronutrients, and a balanced approach is essential to improve tolerance. Molecular breeding, precision agriculture, and sustainable soil management should be integrated into future studies to mitigate stress impacts and ensure stable yields. Our interdisciplinary approaches will drive sustainable agri-ecosystems for global food security amid climate change and degradation.
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Affiliation(s)
- Muhammad Arif
- College of Agriculture, Guizhou University, Guiyang 550025, Guizhou, China; Guizhou Sub-center of National Wheat Improvement Center, Guiyang 550025, China
| | - Muhammad Ilyas
- Department of Botany, Kohsar University Murree, Punjab, Pakistan
| | - Muhammad Adnan
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang, Guizhou 550081, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Rabia Kalsoom
- Plant Virology Section, Ayub Agriculture Research Institute, Faisalabad, Pakistan
| | - Mingjian Ren
- College of Agriculture, Guizhou University, Guiyang 550025, Guizhou, China; Guizhou Sub-center of National Wheat Improvement Center, Guiyang 550025, China
| | - Ruhong Xu
- College of Agriculture, Guizhou University, Guiyang 550025, Guizhou, China; Guizhou Sub-center of National Wheat Improvement Center, Guiyang 550025, China
| | - Luhua Li
- College of Agriculture, Guizhou University, Guiyang 550025, Guizhou, China; Guizhou Sub-center of National Wheat Improvement Center, Guiyang 550025, China.
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Zampieri E, Cucu MA, Franchi E, Fusini D, Pietrini I, Centritto M, Balestrini R. Characterization of Different Soil Bacterial Strains and Assessment of Their Impact on the Growth of Triticum turgidum spp. durum and Lens culinaris spp. culinaris. Curr Microbiol 2025; 82:199. [PMID: 40097641 DOI: 10.1007/s00284-025-04171-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2024] [Accepted: 02/28/2025] [Indexed: 03/19/2025]
Abstract
Plant growth-promoting bacteria (PGPB) are vital for enhancing plant growth, productivity, and sustainability in agriculture, also addressing food security challenges. The plant growth-promoting (PGP) potential of ten bacterial strains, isolated from a cultivated field in southern Italy, was characterized with biochemical and molecular analyses and plant growth-promoting activity was tested on two durum wheat varieties (RGT Aventadur and Farah) and a lentil one (Altamura Lentil) under semi-controlled conditions. The isolated strains were classified using 16S rRNA gene sequencing. Results showed that they belonged to Pseudomonaceae, Rhizobiaceae, Bacillaceae and Micrococcaceae families. They exhibited typical features of PGPB, such as inorganic phosphate solubilization, production of indole acetic acid, ammonia, and biofilm formation. Bacterial inoculation of wheat plants led to the identification of potentially interesting strains that positively affected biometric parameters (i.e., shoot height, tiller number and spike weight) in a genotype-dependent way. The contrasting effect of some bacterial strains on the two wheat genotypes supports the necessity to accurately formulate synthetic microbial consortia characterized by long-term PGP traits, taking into account that the application under field conditions might also be influenced by native soil microbiota.
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Affiliation(s)
- Elisa Zampieri
- Institute for Sustainable Plant Protection (CNR-IPSP), National Research Council of Italy, Turin, Italy
| | - Maria Alexandra Cucu
- Institute for Sustainable Plant Protection (CNR-IPSP), National Research Council of Italy, Turin, Italy
| | - Elisabetta Franchi
- R&D Environmental & Biological Laboratories, Eni S.P.A, San Donato Milanese, Italy
| | - Danilo Fusini
- R&D Environmental & Biological Laboratories, Eni S.P.A, San Donato Milanese, Italy
| | - Ilaria Pietrini
- R&D Environmental & Biological Laboratories, Eni S.P.A, San Donato Milanese, Italy
| | - Mauro Centritto
- Institute for Sustainable Plant Protection (CNR-IPSP), National Research Council of Italy, Turin, Italy
| | - Raffaella Balestrini
- Institute of Biosciences and Bioresources, National Research Council of Italy, CNR-IBBR), Bari, Italy.
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MacDonald MT, Mohan VR. Chemical Seed Priming: Molecules and Mechanisms for Enhancing Plant Germination, Growth, and Stress Tolerance. Curr Issues Mol Biol 2025; 47:177. [PMID: 40136431 PMCID: PMC11941364 DOI: 10.3390/cimb47030177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2025] [Revised: 02/28/2025] [Accepted: 03/06/2025] [Indexed: 03/27/2025] Open
Abstract
Food security is one of the world's top challenges, specifically considering global issues like climate change. Seed priming is one strategy to improve crop production, typically via increased germination, yields, and/or stress tolerance. Hydropriming, or soaking seeds in water only, is the simplest form of seed priming. However, the addition of certain seed priming agents has resulted in a variety of modified strategies, including osmopriming, halopriming, hormonal priming, PGR priming, nutripriming, and others. Most current research has focused on hormonal and nutripriming. This review will focus on the specific compounds that have been used most often over the past 3 years and the physiological effects that they have had on crops. Over half of recent research has focused on four compounds: (1) salicylic acid, (2) zinc, (3) gibberellic acid, and (4) potassium nitrate. One of the most interesting characteristics of all chemical seed priming agents is that they are exposed only to seeds yet confer benefits throughout plant development. In some cases, such benefits have been passed to subsequent generations, suggesting an epigenetic effect, which is supported by observed changes in DNA methylation and histone modification. This review will summarize the current state of knowledge on molecular changes and physiological mechanisms associated with chemical seed priming agents and discuss avenues for future research.
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Affiliation(s)
- Mason T. MacDonald
- Department of Plant, Food and Environmental Sciences, Faculty of Agriculture, Dalhousie University, Bible Hill, NS B2N 5E3, Canada;
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Bashir L, Budhlakoti N, Pradhan AK, Mehmood A, Haque M, Jacob SR, Bhardwaj R, Gaikwad K, Mishra DC, Kaur S, Bhati PK, Singh GP, Kumar S. Unraveling the genetic basis of heat tolerance and yield in bread wheat: QTN discovery and Its KASP-assisted validation. BMC PLANT BIOLOGY 2025; 25:268. [PMID: 40021958 PMCID: PMC11871653 DOI: 10.1186/s12870-025-06285-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2024] [Accepted: 02/20/2025] [Indexed: 03/03/2025]
Abstract
BACKGROUND Wheat (Triticum aestivum L.), a globally significant cereal crop and staple food, faces major production challenges due to abiotic stresses such as heat stress (HS), which pose a threat to global food security. To address this, a diverse panel of 126 wheat genotypes, primarily landraces, was evaluated across twelve environments in India, comprising of three locations, two years and two growing conditions. The study aimed to identify genetic markers associated with key agronomic traits in bread wheat, including germination percentage (GERM_PCT), ground cover (GC), days to booting (DTB), days to heading (DTHD), days to flowering (DTFL), days to maturity (DTMT), plant height (PH), grain yield (GYLD), thousand grain weight (TGW), and the normalized difference vegetation index (NDVI) under both timely and late-sown conditions using 35 K SNP genotyping assays. Multi-locus GWAS (ML-GWAS) was employed to detect significant marker-trait associations, and the identified markers were further validated using Kompetitive Allele Specific PCR (KASP). RESULTS Six ML-GWAS models were employed for this purpose, leading to the identification of 42 highly significant and consistent quantitative trait nucleotides (QTNs) under both timely and late sown conditions, controlled by 20 SNPs, explaining 3-58% of the total phenotypic variation. Among these, noteworthy QTNs were a major grain yield QTN (qtn_nbpgr_GYLD_3B) on chromosome 3B, a pleiotropic SNP AX-95018072 on chromosome 7A influencing phenology and NDVI, and robust TGW QTNs on chromosomes 2B (qtn_nbpgr_TGW_2B), 1A (qtn_nbpgr_TGW_1A), and 4B (qtn_nbpgr_TGW_4B). Furthermore, annotation revealed that candidate genes near these QTNs encoded stress-responsive proteins, such as chaperonins, glycosyl hydrolases, and signaling molecules. Additionally, three major SNPs AX-95018072 (7A), AX-94946941 (6B), and AX-95232570 (1B) were successfully validated using KASP assay. CONCLUSION Our study effectively uncovered novel QTNs and candidate genes linked to heat tolerance and yield-related traits in wheat through an extensive genetic approaches. These QTNs not only corresponded with previously identified QTLs and genes associated with yield traits but also highlighted several new loci, broadening the existing genetic understanding. These findings provide valuable insights into the genetic basis of heat tolerance in wheat and offer genomic resources, including validated markers that could accelerate marker-assisted breeding and the development of next-generation heat-resilient cultivars.
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Affiliation(s)
- Latief Bashir
- ICAR-National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi, 110012, India
| | - Neeraj Budhlakoti
- ICAR- Indian Agricultural Statistics Research Institute, New Delhi, India
| | - Anjan Kumar Pradhan
- School of Plant, Environmental and Soil Science, LSU AgCenter, Louisiana State University, Baton Rouge, USA
| | - Azhar Mehmood
- ICAR- Indian Agricultural Research Institute, New Delhi, India
| | - Mahin Haque
- ICAR-National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi, 110012, India
| | - Sherry R Jacob
- ICAR-National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi, 110012, India
| | - Rakesh Bhardwaj
- ICAR-National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi, 110012, India
| | - Kiran Gaikwad
- ICAR- Indian Agricultural Research Institute, New Delhi, India
| | | | | | - Pradeep Kumar Bhati
- Borlaug Institute for South Asia (BISA, CIMMYT-India, BISA Farm Ladhowal, Ludhiana, Punjab, 141008, India
| | - G P Singh
- ICAR-National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi, 110012, India
| | - Sundeep Kumar
- ICAR-National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi, 110012, India.
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Peters Haugrud AR, Achilli AL, Martínez‐Peña R, Klymiuk V. Future of durum wheat research and breeding: Insights from early career researchers. THE PLANT GENOME 2025; 18:e20453. [PMID: 38760906 PMCID: PMC11733671 DOI: 10.1002/tpg2.20453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 03/26/2024] [Accepted: 04/02/2024] [Indexed: 05/20/2024]
Abstract
Durum wheat (Triticum turgidum ssp. durum) is globally cultivated for pasta, couscous, and bulgur production. With the changing climate and growing world population, the need to significantly increase durum production to meet the anticipated demand is paramount. This review summarizes recent advancements in durum research, encompassing the exploitation of existing and novel genetic diversity, exploration of potential new diversity sources, breeding for climate-resilient varieties, enhancements in production and management practices, and the utilization of modern technologies in breeding and cultivar development. In comparison to bread wheat (T. aestivum), the durum wheat community and production area are considerably smaller, often comprising many small-family farmers, notably in African and Asian countries. Public breeding programs such as the International Maize and Wheat Improvement Center (CIMMYT) and the International Center for Agricultural Research in the Dry Areas (ICARDA) play a pivotal role in providing new and adapted cultivars for these small-scale growers. We spotlight the contributions of these and others in this review. Additionally, we offer our recommendations on key areas for the durum research community to explore in addressing the challenges posed by climate change while striving to enhance durum production and sustainability. As part of the Wheat Initiative, the Expert Working Group on Durum Wheat Genomics and Breeding recognizes the significance of collaborative efforts in advancing toward a shared objective. We hope the insights presented in this review stimulate future research and deliberations on the trajectory for durum wheat genomics and breeding.
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Affiliation(s)
- Amanda R. Peters Haugrud
- Cereal Crops Research Unit, Edward T. Schafer Agricultural Research Center, Agricultural Research ServiceUnited States Department of AgricultureFargoNorth DakotaUSA
| | - Ana Laura Achilli
- Faculty of Land and Food SystemsThe University of British ColumbiaVancouverBritish ColumbiaCanada
| | - Raquel Martínez‐Peña
- Regional Institute of Agri‐Food and Forestry Research and Development of Castilla‐La Mancha (IRIAF)Agroenvironmental Research Center El ChaparrilloCiudad RealSpain
| | - Valentyna Klymiuk
- Crop Development Centre and Department of Plant SciencesUniversity of SaskatchewanSaskatoonSaskatchewanCanada
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Fan Y, He L, Wang S. Limited improvement of crop nitrogen management sustainability through optimal crop distributions in drylands. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2025; 377:124716. [PMID: 40024157 DOI: 10.1016/j.jenvman.2025.124716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2024] [Revised: 02/04/2025] [Accepted: 02/22/2025] [Indexed: 03/04/2025]
Abstract
Efficient nitrogen (N) management is essential for sustainable global food production. Although optimal crop distributions are recognized as potential adaptive strategies to offset the adverse effects of climate change, their effectiveness in improving regional crop N management sustainability is still uncertain. Here, we quantified spatiotemporal trends of the sustainable N management index (SNMI) for optimal crop distributions (determined by maximum crop suitability per grid) in the Hexi Corridor drylands in Northwest China since the 1960s, using crop yields and N use efficiency (NUE) simulated by a process-based regional crop model (pDSSAT). We also reduced the uncertainties of model parameters and climate scenarios in yield simulations through field water-nitrogen experiments for six crops (maize, wheat, potato, rapeseed, cotton, and alfalfa) and emergent-constraint approach, respectively. Analysis of SNMI shows an upward trend over the past 60 years, but future 20 years find a significant decline. Our findings indicate a 4-29% reduction in uncertainty using constrained crop yields versus regional average yields, which improve the sustainability of crop N management in optimal crop distributions with a lower SNMI. Future climate scenarios would further intensify crop yield loss, but optimal crop distributions will decline regional crop yield by 2%, increase NUE by 10%, and decrease SNMI by 13% compared to the 2011-2020. These results demonstrate a limited improvement of optimal crop distributions on historical SNMI, whereas their effectiveness is supported in future climate conditions-a result of a noticeable enhancement in NUE that compensates the detrimental impacts of yield reduction. Therefore, we recommend revisiting more adaptive strategies alongside optimal crop distributions for consistently improve the sustainability of crop N management.
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Affiliation(s)
- Yunfei Fan
- State Key Laboratory of Efficient Utilization of Agricultural Water Resources, China Agricultural University, Beijing, 100083, China; Center for Agricultural Water Research in China, China Agricultural University, Beijing, 100083, China; National Field Scientific Observation and Research Station on Efficient Water Use of Oasis Agriculture in Wuwei of Gansu Province, Wuwei, 733000, China
| | - Liuyue He
- Ocean College, Zhejiang University, Zhoushan, 316021, China
| | - Sufen Wang
- State Key Laboratory of Efficient Utilization of Agricultural Water Resources, China Agricultural University, Beijing, 100083, China; Center for Agricultural Water Research in China, China Agricultural University, Beijing, 100083, China; National Field Scientific Observation and Research Station on Efficient Water Use of Oasis Agriculture in Wuwei of Gansu Province, Wuwei, 733000, China.
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Liu L, Li L, Feng Y, Wang T, Li C, Wu H, Hu Y, Wu Q, Zhao H. Impact of heat stress on the development, physiological and biochemical characteristics of Tartary buckwheat flowers, and its transcriptomic analysis. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2025; 220:109535. [PMID: 39864295 DOI: 10.1016/j.plaphy.2025.109535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2024] [Revised: 12/17/2024] [Accepted: 01/19/2025] [Indexed: 01/28/2025]
Abstract
Tartary buckwheat (Fagopyrum tataricum), a functional grain known for its medicinal and nutritional properties, has garnered significant attention due to its high flavonoid content and unique health benefits. Heat stress during the flowering stage can lead to sterility in Tartary buckwheat, resulting in reduced yields. This study investigates the effects of a treatment (30/27 °C for 7 days) on flower development, fertility, stress physiology, and gene expression in Tartary buckwheat, while also validating the efficacy of hormone treatments in alleviating the negative effects of heat stress. The results show that fertilization in Tartary buckwheat typically occurs within 3-5 days post-anthesis. By the 5th day, the stamen length in the heat-treated group was reduced by 13.89% compared to the control, while pistil length increased by 35.44%. Heat stress delayed the pistil stigma's transition into its highly receptive phase and caused a significant reduction in pollen viability by 15.25% after 5 days of treatment. Furthermore, after 7 days of treatment, the levels of H2O2 and O2- increased by 44.9% and 37.2%, respectively. However, Tartary buckwheat mitigated the impact of oxidative damage by enhancing the enzymatic activity of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT). Transcriptome analysis revealed that heat stress significantly suppressed the expression of genes in hormone signaling pathways, such as indole-3-acetic acid (IAA), gibberellin (GA), and jasmonic acid (JA). Under heat treatment conditions, exogenous hormone application significantly regulated the dynamics of flower development. Specifically, after 3 days of heat treatment, all hormone treatments significantly inhibited the abnormal elongation of stamens, with GA notably suppressing the abnormal elongation of pistils. After 5 days, GA significantly promoted stamen elongation, while IAA and jasmonic acid (JA) significantly inhibited the abnormal elongation of pistils. After 7 days, all three hormone treatments significantly promoted stamen elongation and effectively inhibited abnormal pistil growth. These results suggest that under heat stress conditions, GA plays a key role in promoting stamen elongation, while IAA and JA inhibit the abnormal elongation of the pistil. Prolonged high temperatures can impair the function of floral organs, while JA treatment on the seventh day of heat treatment effectively restored pistil receptivity and significantly improved pollen vitality. In summary, this study provides in-depth insights into the mechanisms by which heat stress affects flower development in Tartary buckwheat, offering theoretical foundations and practical guidance for reducing the impact of heat stress on buckwheat yield.
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Affiliation(s)
- Lisong Liu
- College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China
| | - Li Li
- College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China
| | - Yanjun Feng
- College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China
| | - Tao Wang
- College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China
| | - Chenglei Li
- College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China
| | - Huala Wu
- College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China
| | - Yufeng Hu
- State Key Laboratory of Crop Exploration and Utilization in Southwest China, Sichuan Agricultural University, Ya'an, 611130, China
| | - Qi Wu
- College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China
| | - Haixia Zhao
- College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China.
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Shi Y, Ma H, Li T, Guo E, Zhang T, Zhang X, Yang X, Wang L, Jiang S, Deng Y, Guan K, Li M, Liu Z, Yang X. Innovative modeling on the effects of low-temperature stress on rice yields. JOURNAL OF EXPERIMENTAL BOTANY 2025; 76:1230-1243. [PMID: 39556445 DOI: 10.1093/jxb/erae452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2024] [Accepted: 11/15/2024] [Indexed: 11/20/2024]
Abstract
The increasing frequency and intensity of low-temperature events in temperate and cold rice production regions threatens rice yields under climate change. While process-based crop models can project climate impacts on rice yield, their accuracy under low-temperature conditions has not been well evaluated. Our 6 year chamber experiments revealed that low temperatures reduce spikelet fertility from panicle initiation to flowering, grain number per spike during panicle development, and grain weight during grain filling. We examined the algorithms of spikelet fertility response to temperature used in crop models. The results showed that simulation performance is poor for crop yields if the same function was used at different growth stages outside the booting stage. Indeed, we replaced the algorithm for the spikelet fertility parameter of the ORYZA model and developed the function of estimated grain number per spike and grain weight. After that, the algorithm with improved equations was applied to 10 rice growth models. New functions considered the harmful effects of low temperatures on rice yield at different stages. In addition, the threshold temperatures of cold tolerance were set for different rice varieties. The improved algorithm enhances the ability of the models to simulate rice yields under climate change, providing a more reliable tool for adapting rice production to future climatic challenges.
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Affiliation(s)
- Yanying Shi
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Haoyu Ma
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Tao Li
- International Rice Research Institute, Los Baños, Philippines
| | - Erjing Guo
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Tianyi Zhang
- Key Laboratory of Earth System Numerical Modeling and Application, Chinese Academy of Sciences, Beijing 100029, China
| | - Xijuan Zhang
- Cultivation and Farming Research Institute, Heilongjiang Academy of Agricultural Sciences, Harbin 150086, China
| | - Xianli Yang
- Cultivation and Farming Research Institute, Heilongjiang Academy of Agricultural Sciences, Harbin 150086, China
| | - Lizhi Wang
- International Rice Research Institute, Los Baños, Philippines
| | - Shukun Jiang
- International Rice Research Institute, Los Baños, Philippines
| | - Yuhan Deng
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Kaixin Guan
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Mingzhe Li
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Zhijuan Liu
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Xiaoguang Yang
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
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10
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Oiestad AJ, Blake NK, Tillett BJ, O’Sullivan ST, Cook JP, Giroux MJ. Plant Productivity and Leaf Starch During Grain Fill Is Linked to QTL Containing Flowering Locus T1 ( FT1) in Wheat ( Triticum aestivum L.). PLANTS (BASEL, SWITZERLAND) 2025; 14:512. [PMID: 40006771 PMCID: PMC11858846 DOI: 10.3390/plants14040512] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2024] [Revised: 01/24/2025] [Accepted: 01/26/2025] [Indexed: 02/27/2025]
Abstract
Shifts in the environment due to climate change necessitate breeding efforts aimed at adapting wheat to longer, warmer growing seasons. In this study, 21 modern wheat (Triticum aestivum L.) cultivars and 29 landraces were screened for flag leaf starch levels, with the goal of identifying a genetic marker for targeted breeding. The landrace PI 61693 was identified as having exceptionally high flag leaf starch values. Yield trials were carried out in a Berkut × PI 61693 recombinant inbred line (RIL) population and a negative correlation was observed between leaf starch, flowering time, and yield. Genetic mapping identified a Quantitative Trait Loci (QTL) explaining 22-34% variation for leaf starch, flowering time, biomass, and seed yield. The starch synthase TraesCS7D02G117800 (wSsI-1) is located in this region, which possibly accounts for leaf starch variation in this population; also within this QTL is TraesCS7D02G111600 (FT-D1). Sequencing of FT-D1 identified a single base pair deletion in the 3rd exon of the Berkut allele. This indel has recently been shown to significantly impact flowering time and productivity, and likely led to significant variation in flowering date and yield in this population. Here, we illustrate how allelic selection of FT-D1 within breeding programs may aid in adapting wheat to changing environments.
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Affiliation(s)
| | | | | | | | | | - Michael J. Giroux
- Department of Plant Sciences and Plant Pathology, Montana State University, 119 Plant Bioscience Building, Bozeman, MT 59717-3150, USA; (A.J.O.); (N.K.B.); (B.J.T.); (S.T.O.); (J.P.C.)
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Sinha E, Xu D, Morris KA, Drewniak BA, Bond‐Lamberty B. Interactions Between Climate Mean and Variability Drive Future Agroecosystem Vulnerability. GLOBAL CHANGE BIOLOGY 2025; 31:e70064. [PMID: 39916666 PMCID: PMC11803497 DOI: 10.1111/gcb.70064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/04/2024] [Revised: 01/13/2025] [Accepted: 01/15/2025] [Indexed: 02/11/2025]
Abstract
Agriculture is crucial for global food supply and dominates the Earth's land surface. It is unknown, however, how slow but relentless changes in climate mean state, versus random extreme conditions arising from changing variability, will affect agroecosystems' carbon fluxes, energy fluxes, and crop production. We used an advanced weather generator to partition changes in mean climate state versus variability for both temperature and precipitation, producing forcing data to drive factorial-design simulations of US Midwest agricultural regions in the Energy Exascale Earth System Model. We found that an increase in temperature mean lowers stored carbon, plant productivity, and crop yield, and tends to convert agroecosystems from a carbon sink to a source, as expected; it also can cause local to regional cooling in the earth system model through its effects on the Bowen Ratio. The combined effect of mean and variability changes on carbon fluxes and pools was nonlinear, that is, greater than each individual case. For instance, gross primary production reduces by 9%, 1%, and 13% due to change in mean temperature, change in temperature variability, and change in both temperature mean and variability, respectively. Overall, the scenario with change in both temperature and precipitation means leads to the largest reduction in carbon fluxes (-16% gross primary production), carbon pools (-35% vegetation carbon), and crop yields (-33% and -22% median reduction in yield for corn and soybean, respectively). By unambiguously parsing the effects of changing climate mean versus variability and quantifying their nonadditive impacts, this study lays a foundation for more robust understanding and prediction of agroecosystems' vulnerability to 21st-century climate change.
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Affiliation(s)
- Eva Sinha
- Atmospheric, Climate, and Earth Sciences DivisionPacific Northwest National LaboratoryRichlandWashingtonUSA
| | - Donghui Xu
- Atmospheric, Climate, and Earth Sciences DivisionPacific Northwest National LaboratoryRichlandWashingtonUSA
| | - Kendalynn A. Morris
- Joint Global Change Research InstitutePacific Northwest National LaboratoryCollege ParkMarylandUSA
| | - Beth A. Drewniak
- Environmental Science DivisionArgonne National LaboratoryLemontIllinoisUSA
| | - Ben Bond‐Lamberty
- Joint Global Change Research InstitutePacific Northwest National LaboratoryCollege ParkMarylandUSA
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Wang J, Han Y, Li H, Bai H, Liang H, Zong Y, Zhang D, Shi X, Li P, Hao X. Elevated CO 2 Concentration Extends Reproductive Growth Period and Enhances Carbon Metabolism in Wheat Exposed to Increased Temperature. PLANT, CELL & ENVIRONMENT 2025; 48:1452-1467. [PMID: 39445788 DOI: 10.1111/pce.15243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Revised: 09/19/2024] [Accepted: 10/11/2024] [Indexed: 10/25/2024]
Abstract
Both elevated atmospheric CO2 concentration ([CO2]) and increased temperature exert notable influences on wheat (Triticum aestivum L.) growth and productivity when examined individually. Nevertheless, limited research comprehensively investigates the combined effects of both factors. Winter wheat was grown in environment-controlled chambers under two concentrations of CO2 (ambient CO2 concentration and ambient CO2 concentration plus 200 µmol mol-1) and two levels of temperature (ambient temperature and ambient temperature plus 2°C). The phenology, photosynthesis, carbohydrate and nitrogen metabolism, yield and quality responses of wheat were investigated. Elevated [CO2] did not counteract warming-induced shortening of wheat phenological period but prolonged grain filling. Even though photosynthetic adaptation occurred during the reproductive growth period, elevated [CO2] still significantly enhanced carbohydrate accumulation under warming, particularly at the grain filling stage, thereby increasing yield by 20.1% compared with the ambient control. However, elevated [CO2] inhibited nitrogen assimilation at the grain filling stage under increased temperature by downregulating the expression levels of TaNR, TaNIR, TaGS1 and TaGOGAT and reducing glutamine synthetase activity, which directly led to a significant decrease of 19.4% in grain protein content relative to the ambient control. These findings suggest that elevated [CO2] will likely increase yield but decrease grain nutritional quality for wheat under future global warming scenarios.
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Affiliation(s)
- Jiao Wang
- College of Agriculture, Shanxi Agricultural University, Taigu, China
- State Key Laboratory of Sustainable Dryland Agriculture, Shanxi Agricultural University, Taiyuan, China
| | - Yuyan Han
- College of Agriculture, Shanxi Agricultural University, Taigu, China
| | - Hongyan Li
- College of Agriculture, Shanxi Agricultural University, Taigu, China
| | - Haixia Bai
- College of Agriculture, Shanxi Agricultural University, Taigu, China
| | - Hui Liang
- College of Agriculture, Shanxi Agricultural University, Taigu, China
| | - Yuzheng Zong
- College of Agriculture, Shanxi Agricultural University, Taigu, China
| | - Dongsheng Zhang
- College of Agriculture, Shanxi Agricultural University, Taigu, China
| | - Xinrui Shi
- College of Agriculture, Shanxi Agricultural University, Taigu, China
| | - Ping Li
- College of Agriculture, Shanxi Agricultural University, Taigu, China
- State Key Laboratory of Sustainable Dryland Agriculture, Shanxi Agricultural University, Taiyuan, China
| | - Xingyu Hao
- College of Agriculture, Shanxi Agricultural University, Taigu, China
- State Key Laboratory of Sustainable Dryland Agriculture, Shanxi Agricultural University, Taiyuan, China
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Ploschuk RA, Savin R, Slafer GA. Dual stress, equivalent harm? hypothesizing on the type of interactions between waterlogging and high temperature. FRONTIERS IN PLANT SCIENCE 2025; 15:1472665. [PMID: 39931341 PMCID: PMC11807965 DOI: 10.3389/fpls.2024.1472665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2024] [Accepted: 12/30/2024] [Indexed: 02/13/2025]
Abstract
Episodes of extreme weather, such as high temperatures and heavy rains causing waterlogging, have been becoming more frequent due to climate change, posing risks to crops and reducing growth and yield. While the impact of these stresses has been individually studied, there is a significant gap in understanding their combined effects within the same growing season. There were only 15 studies in the rigorous literature addressing the combined impact of high temperatures and waterlogging. None explicitly examined whether these combined effects were additive (penalties close to the sum of the individual penalties), synergistic (more severe penalties), or antagonistic (less severe penalties). We aimed to propose a sound hypothesis on the most likely type of interaction between these two stressors. Reviewing the scarce literature we found, against expectations, that antagonistic interactions were most common, followed by cases of additive effects, with synergistic interactions being rare. Notably, while the primary concern of virtually all studies was the impact on crop yield, most of them focused exclusively on leaf-level traits, whose responses did not correlate well with yield responses. This preliminary analysis provides solid roots for hypothesizing that waterlogging and high temperatures interact antagonistically; i.e., that plants might develop some resilience when exposed to one stress, potentially reducing the impact of the other. Should this hypothesis be accepted, considering not only physiological traits but also, and mainly, yield in major crops, there would be a less pessimistic view on the expected outcome of the increased frequency of crops being exposed to combined high temperature and waterlogging.
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Affiliation(s)
- Rocío A. Ploschuk
- Department of Agricultural and Forest Sciences and Engineering, University of Lleida – AGROTECNIO-CERCA Center, Lleida, Spain
| | - Roxana Savin
- Department of Agricultural and Forest Sciences and Engineering, University of Lleida – AGROTECNIO-CERCA Center, Lleida, Spain
| | - Gustavo A. Slafer
- Department of Agricultural and Forest Sciences and Engineering, University of Lleida – AGROTECNIO-CERCA Center, Lleida, Spain
- ICREA, Catalonian Institution for Research and Advanced Studies, Barcelona, Spain
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14
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Chauhdary JN, Li H, Pan X, Zaman M, Anjum SA, Yang F, Akbar N, Azamat U. Modeling effects of climate change on crop phenology and yield of wheat-maize cropping system and exploring sustainable solutions. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2025. [PMID: 39866083 DOI: 10.1002/jsfa.14134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 11/16/2024] [Accepted: 12/27/2024] [Indexed: 01/28/2025]
Abstract
BACKGROUND Wheat-maize cropping systems in semi-arid regions are expected to be affected by climate change in the future, which is alarming for global food security, environmental sustainability and socioeconomic development. Therefore, management practices like optimized plant geometry and fertilization need to be explored to counter these expected threats. To do this, the APSIM model was calibrated using 5-year data (from 2017/2018 to 2022) regarding yield, biomass, plant height, emergence, anthesis and crop maturity of wheat and maize from farmer fields. RESULTS The performance of a model run was assessed using root mean square error, normalized root mean square error, coefficient of residual mass, coefficient of determination (R2) and Nash-Sutcliffe efficiency, whose average was 1.59, 0.13, 0.001, 0.84 and 0.78, respectively, for calibration while 2.75, 0.20, -0.009, 0.80 and 0.75, respectively, for validation. Regarding crop phenology, it was modelled that the emergence, anthesis and maturity were earlier by 7-9 days, 8-10 days and 2-6 days, respectively, for wheat; 6-10 days, 13-20 days and 16-24 days, respectively, for spring maize; 3-5 days, 5-11 days and 8-19 days, respectively, for autumn maize under different climate change scenarios in near to far future. Simulations revealed the average reduction in the yield of wheat, spring maize and autumn maize by 11.5%, 11.8% and 11.0%, respectively, in near future (2025-2065) while 17.5%, 20.5% and 17.0%, respectively, in far future (2066-2100). Further, simulations discovered the potential of higher levels of fertilization (nitrogen = 60-100 kg ha-1 and phosphorus = 40-75 kg ha-1 for wheat while nitrogen = 75-120 kg ha-1 and phosphorus = 40-80 kg ha-1 for maize) and plant density (100 to 150 plants m-2 for wheat and 8 to 13 plants m-2 for maize) to enhance the yield of wheat, spring maize and autumn maize by 31-36%, 22-38% and 26-43%, respectively, in near future while 33-38%, 21-55% and 19-31%, respectively, in far future. CONCLUSIONS The findings underscore the effects of climate change on wheat-maize cropping systems and the importance of implementing optimized fertilization and adjusting plant density to mitigate the adverse effects of climate change, thereby safeguarding food security and sustaining agricultural productivity. © 2025 Society of Chemical Industry.
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Affiliation(s)
- Junaid Nawaz Chauhdary
- Research Center of Fluid Machinery Engineering and Technology, Jiangsu University, Zhenjiang, China
- Water Management Research Centre, University of Agriculture, Faisalabad, Pakistan
- Center of Research and Innovation, Asia International University, Bukhara, Uzbekistan
| | - Hong Li
- Research Center of Fluid Machinery Engineering and Technology, Jiangsu University, Zhenjiang, China
| | - Xuwei Pan
- Research Center of Fluid Machinery Engineering and Technology, Jiangsu University, Zhenjiang, China
| | - Muhammad Zaman
- Department of Irrigation and Drainage, University of Agriculture, Faisalabad, Pakistan
| | | | - Fan Yang
- Research Center of Fluid Machinery Engineering and Technology, Jiangsu University, Zhenjiang, China
| | - Nadeem Akbar
- Department of Agronomy, University of Agriculture, Faisalabad, Pakistan
| | - Urunbayev Azamat
- Center of Research and Innovation, Asia International University, Bukhara, Uzbekistan
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15
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Zheng Y, Cai Z, Wang Z, Maruza TM, Zhang G. The Genetics and Breeding of Heat Stress Tolerance in Wheat: Advances and Prospects. PLANTS (BASEL, SWITZERLAND) 2025; 14:148. [PMID: 39861500 PMCID: PMC11768744 DOI: 10.3390/plants14020148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2024] [Revised: 12/27/2024] [Accepted: 01/04/2025] [Indexed: 01/27/2025]
Abstract
Heat stress is one of the major concerns for wheat production worldwide. Morphological parameters such as germination, leaf area, shoot, and root growth are affected by heat stress, with affected physiological parameters including photosynthesis, respiration, and water relation. Heat stress also leads to the generation of reactive oxygen species that disrupt the membrane systems of thylakoids, chloroplasts, and the plasma membrane. The deactivation of the photosystems, reduction in photosynthesis, and inactivation of Rubisco affect the production of photo-assimilates and their allocation, consequently resulting in reduced grain yield and quality. The development of thermo-tolerant wheat varieties is the most efficient and fundamental approach for coping with global warming. This review provides a comprehensive overview of various aspects related to heat stress tolerance in wheat, including damages caused by heat stress, mechanisms of heat stress tolerance, genes or QTLs regulating heat stress tolerance, and the methodologies of breeding wheat cultivars with high heat stress tolerance. Such insights are essential for developing thermo-tolerant wheat cultivars with high yield potential in response to an increasingly warmer environment.
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Affiliation(s)
| | | | | | | | - Guoping Zhang
- Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Department of Agronomy, Zhejiang University, Hangzhou 310058, China; (Y.Z.); (Z.C.); (Z.W.); (T.M.M.)
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16
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Xue S, Guo X, He Y, Cai H, Li J, Zhu L, Ye C. Effects of future climate and land use changes on runoff in tropical regions of China. Sci Rep 2024; 14:30922. [PMID: 39730619 DOI: 10.1038/s41598-024-81754-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2024] [Accepted: 11/28/2024] [Indexed: 12/29/2024] Open
Abstract
Climate change and human activities are the primary drivers influencing changes in runoff dynamics. However, current understanding of future hydrological processes under scenarios of gradual climate change and escalating human activities remains uncertain, particularly in tropical regions affected by deforestation. Based on this, we employed the SWAT model coupled with the near future (2021-2040) and middle future (2041-2060) global climate models (GCMs) under four shared socioeconomic pathways (SSP1-2.6 (SSP1 + RCP2.6), SSP2-4.5 (SSP2 + RCP4.5), SSP3-7.0 (SSP3 + RCP7.0), and SSP5-8.5 (SSP5 + RCP8.5)) from the CMIP6 and the CA-Markov model to evaluate the runoff response to future environmental changes in the Dingan River Basin (DRB). The quantification of the impacts of climate change and land use change on future runoff changes was conducted. The results revealed a non-significant increasing trend in precipitation during the historical period (1999-2018). Furthermore, all three future scenarios (SSP1-2.6, SSP3-7.0, and SSP5-8.5) exhibited an upward trend in precipitation from 2021 to 2060. Notably, the SSP5-8.5 scenario demonstrated a highly significant increase (P < 0.01), while the SSP2-4.5 scenario displayed a non-significant decreasing trend. The future precipitation pattern exhibits a decrease during spring and winter, while showing an increase in summer and autumn. The temperature exhibited a significant increase (P < 0.05) across the four future scenarios, with amplitudes of 0.24 °C/(10 years), 0.36 °C/(10 years), 0.36 °C/(10 years), and 0.50 °C/(10 years) for SSP1-2.6, SSP2-4.5, SSP3-7.0, and SSP5-8.5 respectively. The future trend of land use change entails a continuous increase in cultivated land and a corresponding decrease in artificial forest land. By 2032, the area of cultivated land is projected to witness a growth of 4.10%, while artificial forest coverage will experience a decline of 4.45%. Furthermore, by 2046, the extent of cultivated land is anticipated to expand by 4.41%, accompanied by a reduction in artificial forest cover amounting to 5.39%. The average annual runoff during the historical period was 53.35 m³/s, and the Mann-Kendall (MK) trend test showed that it exhibited a non-significant increasing trend. Compared with the historical period, the comprehensive impact of climate change and land use will cause changes in the runoff by 0.49%, 1.98%, - 3.13%, and 3.65% for the scenarios of SSP1-2.6, SSP2-4.5, SSP3-7.0, and SSP5-8.5 in the near future, and - 3.24%, 1.30%, - 3.75% and 18.24% in the middle future respectively. The intra-annual variations in future runoff suggest an earlier peak and a more concentrated distribution of runoff during the wet season (May to October). Compared to historical periods, the total runoff in the wet season under SSP1-2.6, SSP2-4.5, SSP3-7.0, and SSP5-8.5 scenarios increased by 6.53%, 8.91%, 7.17%, and 7.39%, respectively. The research findings offer significant insights into the future hydrological processes in tropical regions, while also serving as a valuable reference for watershed water resource management and disaster control.
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Affiliation(s)
- Shiyu Xue
- School of Ecology, Hainan University, Haikou, 570228, China
| | - Xiaohui Guo
- School of Ecology, Hainan University, Haikou, 570228, China
| | - Yanhu He
- Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou, 510006, China
| | - Hao Cai
- School of Ecology, Hainan University, Haikou, 570228, China
| | - Jun Li
- School of Ecology, Hainan University, Haikou, 570228, China
| | - Lirong Zhu
- School of Tourism, Hainan University, Haikou, 570228, China
| | - Changqing Ye
- School of Ecology, Hainan University, Haikou, 570228, China.
- Key Laboratory of Agro-Forestry Environmental Processes and Ecological Regulation of Hainan Province, Haikou, 570228, China.
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17
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Krishnan J. N, Kaur S, Kumar U, Singh R, Dhillon GS, Bhati PK, Chhuneja P. Mapping heat tolerance QTLs in Triticum durum-Aegilops speltoides backcross introgression lines to enhance thermotolerance in wheat. FRONTIERS IN PLANT SCIENCE 2024; 15:1485914. [PMID: 39759239 PMCID: PMC11695302 DOI: 10.3389/fpls.2024.1485914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2024] [Accepted: 11/27/2024] [Indexed: 01/07/2025]
Abstract
Wheat, a major cereal crop, is the most consumed staple food after rice in India. Frequent episodes of heat waves during the past decade have raised concerns about food security under impending global warming and necessitate the development of heat-tolerant wheat cultivars. Wild relatives of crop plants serve as untapped reservoirs of novel genetic variations. In the present study a mapping population comprising 311 BC2F10 backcross introgression lines (BILs) developed by crossing Triticum durum and heat-tolerant diploid wild wheat relative Aegilops speltoides accession pau3809 was used to map QTLs for terminal heat tolerance. The homozygous BILs were evaluated for heat stress tolerance component traits under an optimum environment (OE) and a heat-stressed environment (HE) for the two cropping seasons. Data on spike length, spikelet number per spike, peduncle length, thousand-grain weight, grains per spike, days to heading, days to maturity, grain filling duration, NDVI at heading, plant height and plot yield were recorded. Genotyping-by-sequencing (GBS) of the BILs was carried out, and 2945 high-quality, polymorphic SNPs were obtained. Thirty QTLs were detected for various heat tolerance component traits on chromosomes 1A, IB, 2A, 2B, 3B, 4B, 5A, 5B, 6A and 6B with phenotypic variance ranging from 5 to 11.5%. Several candidate genes reported to play a role in heat stress responses were identified by browsing the 1.85 Mb physical region flanking the stable QTLs detected under the HE. Identified QTL and linked markers can be employed for genomics-assisted breeding for heat tolerance in wheat.
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Affiliation(s)
| | - Satinder Kaur
- School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India
| | - Uttam Kumar
- Borlaug Institute for South Asia, Ludhiana, India
- Astralyn Agro One Person Company (OPC) Pvt. Ltd, Shamli, India
| | - Rohtas Singh
- School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India
| | | | | | - Parveen Chhuneja
- School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India
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de Freitas CH, Coelho RD, de Oliveira Costa J, Sentelhas PC. A bitter cup of coffee? Assessing the impact of climate change on Arabica coffee production in Brazil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 957:177546. [PMID: 39566630 DOI: 10.1016/j.scitotenv.2024.177546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Revised: 09/19/2024] [Accepted: 11/11/2024] [Indexed: 11/22/2024]
Abstract
Brazil, the world's largest producer and exporter of Arabica coffee, faces increasing challenges from climate changes. To maintain the sustainability of this commodity, innovative management techniques will be essential. This study aimed to assess the impact of climate projections, considering two CMIP6 emission scenarios (SSP2-4.5 and SSP5-8.5) on the phenology and yield of Arabica coffee in 36 representative locations across Brazil for the periods 2041-2060, 2061-2080, and 2081-2100. Observed meteorological data from the BR-DWGD (Brazilian Daily Weather Gridded Data) and projected data from CLIMBra (Climate Change Dataset for Brazil) were employed. An agrometeorological model, calibrated for Brazilian conditions, estimated yield and phenology. Results indicate significant impacts on coffee cultivation areas, mainly due to rising temperatures and increased water deficits. Projections also suggest changes in coffee phenology, with anthesis advancing in colder regions and delaying in warmer areas, while maturation timing occurring earlier in all climates. Yield increases from CO₂ fertilization were more pronounced in category C climates (Cfa, Cfb, Cwa, and Cwb), particularly in Cwb climates, reaching 2.9 bags ha-1 (3.7 bags ha-1 with irrigation) under the SSP2-4.5 scenario and 2.5 bags ha-1 (3.5 bags ha-1 with irrigation) under SSP5-8.5. However, higher temperatures and water deficits could cause severe yield losses, especially in Aw climates and under high-emission scenarios, where losses may reach 100 %. Irrigation will play an important role in mitigating yield losses, especially in northern regions such as northern Minas Gerais and Bahia, where yields could exceed 30 bags ha-1. While southern Minas Gerais, São Paulo, and northern Paraná are projected to have the highest yields, these regions also face greater uncertainty and variability. This study underscores the need for adaptive agricultural practices, the development of resilient coffee cultivars, and supportive research policies to ensure the sustainability of coffee farming in the face of climate change.
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Affiliation(s)
| | - Rubens Duarte Coelho
- University of São Paulo/USP-ESALQ, Biosystems Engineering Department, C.P. 09, 13418-900 Piracicaba, SP, Brazil
| | - Jéfferson de Oliveira Costa
- Minas Gerais Agricultural Research Agency/EPAMIG, Experimental Field of Gorutuba, 39525-000 Nova Porteirinha, MG, Brazil
| | - Paulo Cesar Sentelhas
- University of São Paulo/USP-ESALQ, Biosystems Engineering Department, C.P. 09, 13418-900 Piracicaba, SP, Brazil
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19
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Hassan AHA, Ahmed ES, Sheteiwy MS, Alhaj Hamoud Y, Okla MK, AlGarawi AM, Maridueña-Zavala MG, Alaraidh IA, Reyad AM, Abdelgawad H. Inoculation with Micromonospora sp. enhances carbohydrate and amino acid production, strengthening antioxidant metabolism to mitigate heat stress in wheat cultivars. FRONTIERS IN PLANT SCIENCE 2024; 15:1500894. [PMID: 39759234 PMCID: PMC11696539 DOI: 10.3389/fpls.2024.1500894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Accepted: 11/15/2024] [Indexed: 01/07/2025]
Abstract
Introduction Heat stress caused by global warming adversely affects wheat yield through declining most nutritional quality attributes in grains, excluding grain protein content. Methods This research investigated the biochemical, physiological, and antioxidant responses of wheat plants under heat stress, focusing on the role of plant growth-promoting bacteria (Micromonospora sp.). Two wheat genotypes were studied: one heat-sensitive and one heat-tolerant, examining their responses to heat stress with and without bacterial inoculation. Results Under heat stress, the sensitive cultivar experienced significant reductions in photosynthesis rate, chlorophyll content, and RuBisCO activity (57-61%), while the tolerant cultivar had milder reductions (24-28%). Micromonospora sp. treatment notably improved these parameters in the sensitive cultivar (+48-78%), resulting in a substantial increase in biomass production (+43-53%), which was not seen in the tolerant cultivar. Additionally, oxidative stress markers (H2O2 and MDA) were elevated more in the sensitive cultivar (82% and 90% higher) compared to the tolerant one. Micromonospora sp. treatment effectively reduced these markers in the sensitive cultivar (-28% and -27%). Enhanced activity of antioxidant enzymes and ASC-GSH pathway enzymes was particularly evident in Micromonospora sp.-treated sensitive plants. Carbohydrate metabolism shifted, with increased soluble sugars and significant rises in sucrose content in Micromonospora sp.-treated plants under stress. Discussion The higher soluble sugar levels facilitated amino acid synthesis, contributing to biosynthesis of secondary metabolites, including flavonoids, polyphenols, and anthocyanins. This was reflected in increased activity of phenylalanine ammonia-lyase, cinnamate (CA) 4-hydroxylase, and chalcone synthase enzymes, indicating the activation of phenylpropanoid pathways. Overall, the findings suggest that Micromonospora sp. can mitigate heat stress effects by enhancing photosynthetic efficiency, antioxidant defense, and metabolic adaptations in heat-sensitive wheat cultivars.
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Affiliation(s)
- Abdelrahim H. A. Hassan
- School of Biotechnology, Nile University, Giza, Egypt
- Department of Food Safety and Technology, Faculty of Veterinary Medicine, Beni-Suef University, Beni-Suef, Egypt
| | - Enas Shaban Ahmed
- Botany and Microbiology Department, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt
| | - Mohamed S. Sheteiwy
- Department of Integrative Agriculture, College of Agriculture and Veterinary Medicine, United Arab Emirates University, Abu Dhabi, United Arab Emirates
- Department of Agronomy, Faculty of Agriculture, Mansoura University, Mansoura, Egypt
| | - Yousef Alhaj Hamoud
- The National Key Laboratory of Water Disaster Prevention, College of Hydrology and Water Resources, Hohai University, Nanjing, China
| | - Mohammad K. Okla
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Amal Mohamed AlGarawi
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Maria Gabriela Maridueña-Zavala
- Centro de Investigaciones Biotecnológicas del Ecuador (CIBE), Escuela Superior Politécnica del Litoral, ESPOL, Guayaquil, Ecuador
| | - Ibrahim A. Alaraidh
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Ahmed M. Reyad
- Botany and Microbiology Department, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt
| | - Hamada Abdelgawad
- Botany and Microbiology Department, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt
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20
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Tschurr F, Roth L, Storni N, Zumsteg O, Walter A, Anderegg J. Temporal resolution trumps spectral resolution in UAV-based monitoring of cereal senescence dynamics. PLANT METHODS 2024; 20:188. [PMID: 39702438 DOI: 10.1186/s13007-024-01308-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Accepted: 11/16/2024] [Indexed: 12/21/2024]
Abstract
BACKGROUND Senescence is a complex developmental process that is regulated by a multitude of environmental, genetic, and physiological factors. Optimizing the timing and dynamics of this process has the potential to significantly impact crop adaptation to future climates and for maintaining grain yield and quality, particularly under terminal stress. Accurately capturing the dynamics of senescence and isolating the genetic variance component requires frequent assessment as well as intense field testing. Here, we evaluated and compared the potential of temporally dense drone-based RGB- and multispectral image sequences for this purpose. Regular measurements were made throughout the grain filling phase for more than 600 winter wheat genotypes across three experiments in a high-yielding environment of temperate Europe. At the plot level, multispectral and RGB indices were extracted, and time series were modelled using different parametric and semi-parametric models. The capability of these approaches to track senescence was evaluated based on estimated model parameters, with corresponding parameters derived from repeated visual scorings as a reference. This approach represents the need for remote-sensing based proxies that capture the entire process, from the onset to the conclusion of senescence, as well as the rate of the progression. RESULTS Our results indicated the efficacy of both RGB and multispectral reflectance indices in monitoring senescence dynamics and accurately identifying key temporal parameters characterizing this phase, comparable to more sophisticated proximal sensing techniques that offer limited throughput. Correlation coefficients of up to 0.8 were observed between multispectral (NDVIred668-index) and visual scoring, respectively 0.9 between RGB (ExGR-index) and visual scoring. Sub-sampling of measurement events demonstrated that the timing and frequency of measurements were highly influential, arguably even more than the choice of sensor. CONCLUSIONS Remote-sensing based proxies derived from both RGB and multispectral sensors can capture the senescence process accurately. The sub-sampling emphasized the importance of timely and frequent assessments, but also highlighted the need for robust methods that enable such frequent assessments to be made under variable environmental conditions. The proposed measurement and data processing strategies can improve the measurement and understanding of senescence dynamics, facilitating adaptive crop breeding strategies in the context of climate change.
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Affiliation(s)
- Flavian Tschurr
- Department of Environmental System Sciences, Institute of Agricultural Sciences, ETH, Zurich, Switzerland.
| | - Lukas Roth
- Department of Environmental System Sciences, Institute of Agricultural Sciences, ETH, Zurich, Switzerland
| | - Nicola Storni
- Department of Environmental System Sciences, Institute of Agricultural Sciences, ETH, Zurich, Switzerland
| | - Olivia Zumsteg
- Department of Environmental System Sciences, Institute of Agricultural Sciences, ETH, Zurich, Switzerland
| | - Achim Walter
- Department of Environmental System Sciences, Institute of Agricultural Sciences, ETH, Zurich, Switzerland
| | - Jonas Anderegg
- Department of Environmental System Sciences, Institute of Integrative Biology, ETH, Zurich, Switzerland
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21
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Hu R, Zhang J, Jawdy S, Sreedasyam A, Lipzen A, Wang M, Ng V, Daum C, Keymanesh K, Liu D, Hu A, Chen JG, Tuskan GA, Schmutz J, Yang X. Transcriptomic Analysis of the CAM Species Kalanchoë fedtschenkoi Under Low- and High-Temperature Regimes. PLANTS (BASEL, SWITZERLAND) 2024; 13:3444. [PMID: 39683237 DOI: 10.3390/plants13233444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2024] [Revised: 11/25/2024] [Accepted: 12/05/2024] [Indexed: 12/18/2024]
Abstract
Temperature stress is one of the major limiting environmental factors that negatively impact global crop yields. Kalanchoë fedtschenkoi is an obligate crassulacean acid metabolism (CAM) plant species, exhibiting much higher water-use efficiency and tolerance to drought and heat stresses than C3 or C4 plant species. Previous studies on gene expression responses to low- or high-temperature stress have been focused on C3 and C4 plants. There is a lack of information about the regulation of gene expression by low and high temperatures in CAM plants. To address this knowledge gap, we performed transcriptome sequencing (RNA-Seq) of leaf and root tissues of K. fedtschenkoi under cold (8 °C), normal (25 °C), and heat (37 °C) conditions at dawn (i.e., 2 h before the light period) and dusk (i.e., 2 h before the dark period). Our analysis revealed differentially expressed genes (DEGs) under cold or heat treatment in comparison to normal conditions in leaf or root tissue at each of the two time points. In particular, DEGs exhibiting either the same or opposite direction of expression change (either up-regulated or down-regulated) under cold and heat treatments were identified. In addition, we analyzed gene co-expression modules regulated by cold or heat treatment, and we performed in-depth analyses of expression regulation by temperature stresses for selected gene categories, including CAM-related genes, genes encoding heat shock factors and heat shock proteins, circadian rhythm genes, and stomatal movement genes. Our study highlights both the common and distinct molecular strategies employed by CAM and C3/C4 plants in adapting to extreme temperatures, providing new insights into the molecular mechanisms underlying temperature stress responses in CAM species.
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Affiliation(s)
- Rongbin Hu
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Jin Zhang
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou 311300, China
| | - Sara Jawdy
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Avinash Sreedasyam
- HudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, AL 35801, USA
| | - Anna Lipzen
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94589, USA
| | - Mei Wang
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94589, USA
| | - Vivian Ng
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94589, USA
| | - Christopher Daum
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94589, USA
| | - Keykhosrow Keymanesh
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94589, USA
| | - Degao Liu
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- Institute of Genomics for Crop Abiotic Stress Tolerance, Department of Plant and Soil Science, Texas Tech University, Lubbock, TX 79409, USA
| | - Alex Hu
- Department of Chemical and Environmental Engineering, University of California-Riverside, Riverside, CA 92521, USA
| | - Jin-Gui Chen
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Gerald A Tuskan
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Jeremy Schmutz
- HudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, AL 35801, USA
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94589, USA
| | - Xiaohan Yang
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
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22
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Becker LE, Cubeta MA. The contribution of beneficial wheat seed fungal communities beyond disease-causing fungi: Advancing heritable mycobiome-based plant breeding. ENVIRONMENTAL MICROBIOLOGY REPORTS 2024; 16:e70004. [PMID: 39529232 PMCID: PMC11554592 DOI: 10.1111/1758-2229.70004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Accepted: 08/21/2024] [Indexed: 11/16/2024]
Abstract
Wheat (Triticum sp.) is a staple cereal crop, providing nearly a fifth of the world's protein and available calories. While fungi associated with wheat plants have been known for centuries, attention to fungi associated with wheat seeds has increased over the last hundred years. Initially, research focused on fungal taxa that cause seed-borne diseases. Seeds act as a physical link between generations and host specialized fungal communities that affect seed dormancy, germination, quality, and disease susceptibility. Interest in beneficial, non-disease-causing fungal taxa associated with seeds has grown since the discovery of Epichloë in fescue, leading to a search for beneficial fungal endophytes in cereal grains. Recent studies of the wheat seed mycobiome have shown that disease, seed development, and temporal variation significantly influence the composition and structure of these fungal communities. This research, primarily descriptive, aims to better understand the wheat seed mycobiome's function in relation to the plant host. A deeper understanding of the wheat seed mycobiome's functionality may offer potential for microbiome-assisted breeding.
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Affiliation(s)
- Lindsey E. Becker
- Department of Entomology and Plant Pathology, Center for Integrated Fungal ResearchNorth Carolina State UniversityRaleighNorth CarolinaUSA
| | - Marc A. Cubeta
- Department of Entomology and Plant Pathology, Center for Integrated Fungal ResearchNorth Carolina State UniversityRaleighNorth CarolinaUSA
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23
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Shimoda S, Shimazaki Y, Ikenaga S, Kawakita S, Nakajima M, Seki M. Uneven changes in air and crown temperatures associated with snowpack changes affect the phenology of overwintering cereals. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 953:175750. [PMID: 39226959 DOI: 10.1016/j.scitotenv.2024.175750] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2024] [Revised: 08/16/2024] [Accepted: 08/22/2024] [Indexed: 09/05/2024]
Abstract
Time series analysis of overwintering cereals in snowy areas has revealed several phenological patterns associated with climate changes in winter. Herein, to investigate the recent effect of climatic variations on overwintering cereals, we investigated the phenology over multiple decades at three snowy region sites with an air temperature (Tair) increase trend of 0.48-1.09 °C/decade. Our findings were as follows: heading trends differed within the same cultivar at different sites; phenology was promoted with increasing temperatures in cooler regions and decreasing snow duration in regions with heavy snow; crown temperature (Tcrown) was a more direct determinant than Tair in phenology estimation model in regions with heavy snow. A thermal gap of more than a few degrees Celsius between Tair and Tcrown, owing to the insulation effect of snowpack, affected the phenology of overwintering cereals. A shorter snow cover period promoted phenology in locations with temperatures >0 °C. Subsequently, we found that when the thermal gap was >0 °C of the growing temperature range, Tcrown directly helped determine the phenology of overwintering cereals, and irrespective of the warming trend, the periodic inflow of cold air into the northern mid-latitudes of the Northern Hemisphere and associated snow cover changes dominated Tcrown, resulting in annual phenological anomalies with a range of fluctuations of approximately 1 month. The trend of increasing Tair during spring in northern Japan is consistent with the global trend, with a pronounced trend of advancing phenology reaching >4 days/decade in a typical cooler location experiencing snowmelt in March.
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Affiliation(s)
- Seiji Shimoda
- National Agriculture and Food Research Organization, Hokkaido Agricultural Research Center, Memuro Research Station (NARO/HARC/M), Shinsei-Minami, Memuro, Kasai, Hokkaido 082-0081, Japan.
| | - Yumi Shimazaki
- National Agriculture and Food Research Organization, Central Agricultural Research Center, Hokuriku Research Station (NARO/CARC/H), Inada, Joetsu, Niigata 943-0193, Japan
| | - Sachiko Ikenaga
- National Agriculture and Food Research Organization, Tohoku Agricultural Research Center (NARO/TARC), Kuriyagawa, Morioka, Iwate 020-0198, Japan
| | - Satoshi Kawakita
- National Agriculture and Food Research Organization, Tohoku Agricultural Research Center (NARO/WARC), Nishifukatsu, Fukuyama, Hiroshima 721-8514, Japan
| | - Miyuki Nakajima
- National Agriculture and Food Research Organization, Tohoku Agricultural Research Center (NARO/TARC), Kuriyagawa, Morioka, Iwate 020-0198, Japan
| | - Masako Seki
- National Agriculture and Food Research Organization, Central Agricultural Research Center, (NARO/CARC), Kannondai, Tsukuba, Ibaraki 305-0856, Japan
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24
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Lotfi R, Eslami-Senoukesh F, Mohammadzadeh A, Zadhasan E, Abbasi A, Kalaji HM. Identification of key chlorophyll fluorescence parameters as biomarkers for dryland wheat under future climate conditions. Sci Rep 2024; 14:28699. [PMID: 39562619 PMCID: PMC11577105 DOI: 10.1038/s41598-024-80164-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Accepted: 11/15/2024] [Indexed: 11/21/2024] Open
Abstract
Nowadays, climate change is the primary factor shaping the future of food and nutritional security. To investigate the interactive effects of various climate variables on photosynthetic efficiency, an experiment was conducted using 10 dryland wheat genotypes. These genotypes were exposed to different conditions: temperatures of 25 ± 3 °C and 34 ± 3 °C, carbon dioxide concentrations of 380 ± 50 ppm and 800 ± 50 ppm, and irrigation regimes of 50% field capacity and well-watered. Our results indicated that the wheat genotypes responded differently to both individual and combined climate stress factors. The traditional winter wheat genotype *Sardari*, along with the newly developed dryland wheat genotype *Ivan*, exhibited resilience to anticipated climate conditions. This resilience was reflected in enhancements in photochemical quantum efficiency parameters (Y(II), qP, and qL) under combined stress conditions. Resilient genotypes demonstrated superior regulation of the stomatal conductance (GS) and electron transport rate (ETR) under elevated temperature and CO2 levels. Principal component analysis (PCA) revealed significant correlations between chlorophyll fluorescence parameters and climate factors, such as NPQ with temperature, Y(NO) with CO2, qL in response to drought stress, and both qP and Y(II) with the interactions among temperature, CO2, and drought stress. Elevated CO2 reduced the ETR and GS across all genotypes. Our findings underscore the importance of assessing not only fundamental chlorophyll fluorescence parameters like Fm and Fo but also the efficiency of NPQ and Y(II) to understand climate change impacts on dryland wheat genotypes. We suggest that these parameters could serve as valuable biomarkers for breeding programs aimed at improving plant adaptation to future dryland climate conditions.
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Affiliation(s)
- Ramin Lotfi
- Dryland Agricultural Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Maragheh, Iran.
| | | | - Arash Mohammadzadeh
- Dryland Agricultural Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Maragheh, Iran
| | - Esmail Zadhasan
- Dryland Agricultural Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Maragheh, Iran
| | - Amin Abbasi
- Department of Plant Production and Genetics, Maragheh University, Maragheh, Iran
| | - Hazem M Kalaji
- Department of Plant Physiology, Institute of Biology, Warsaw University of Life Science, 159 Nowoursynowska St, Warsaw, 02-776, Poland.
- Institute of Technology and Life Sciences Falenty, Al. Hrabska 3, Raszyn, 05-090, Poland.
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25
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Singh A, Samtani H, Gangwar H, Sharma A, Jaiswal V, Djalovic I, Prasad PVV, Gahlaut V. Comparative analysis of IRE1s in plants: insights into heat stress adaptation in Triticum aestivum. BMC PLANT BIOLOGY 2024; 24:1083. [PMID: 39543477 PMCID: PMC11566738 DOI: 10.1186/s12870-024-05785-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Accepted: 11/04/2024] [Indexed: 11/17/2024]
Abstract
BACKGROUND The unfolded protein response (UPR) pathway serves as a crucial mechanism enabling plants to perceive, respond to, and shield themselves from adverse environmental conditions. Inositol-requiring enzyme 1 (IRE1) is one of the key players of the UPR, and resides in the endoplasmic reticulum (ER) within the cell. This study provides a comprehensive analysis of 195 IRE1 genes across 90 diverse plant species, with a focus on their identification and characterization. RESULTS To decipher the functions of IRE1 family members, we investigated the evolution and spread of IREs in plants and analysed their structural and localization characteristics. Our detailed cis-element analysis revealed unique IRE1 regulation patterns in different plant species. Furthermore, gene expression analysis revealed tissue-specific and heat stress-responsive expression patterns of TaIRE1s, which were subsequently confirmed via quantitative gene expression analysis. TaIRE1-6A was upregulated in response to dithiothreitol (DTT) treatment as well as heat stress. This finding suggests that IRE1 might play a role in linking the UPR pathway and the heat stress response (HSR). CONCLUSIONS Our findings provide a comprehensive understanding of the evolution and expansion of IRE1 genes in different plant species. These findings provide a foundation for further in-depth research on the functional diversity of IREs in nutritious crops following polyploidization. By linking the UPR with HSR, IRE1 could be a key contributor to wheat's resilience against heat stress. Additionally, this connection offers important insights for future functional studies in other crops. Thus, this knowledge could be used for engineering climate resilience in crops such as wheat.
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Affiliation(s)
- Amandeep Singh
- Department of Biotechnology, Panjab University, Chandigarh, Punjab, 160014, India
| | - Harsha Samtani
- National Institute of Plant Genome Research, New Delhi, 110067, India
| | - Himanshi Gangwar
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, 176061, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India
| | - Aishwarye Sharma
- National Institute of Plant Genome Research, New Delhi, 110067, India
| | - Vandana Jaiswal
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, 176061, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India
| | - Ivica Djalovic
- Institute of Field and Vegetable Crops, National Institute of the Republic of Serbia, Maxim Gorki 30, Novi Sad, 21000, Serbia
| | - P V Vara Prasad
- Department of Agronomy, Kansas State University, Manhattan, KS, 66506, USA
| | - Vijay Gahlaut
- Department of Biotechnology & University Center for Research and Development, Chandigarh University, Gharuan, Mohali, Punjab, 140413, India.
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26
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Zhang J, Lin X, Jiang C, Hu X, Liu B, Liu L, Xiao L, Zhu Y, Cao W, Tang L. Predicting rice phenology across China by integrating crop phenology model and machine learning. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 951:175585. [PMID: 39155002 DOI: 10.1016/j.scitotenv.2024.175585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Revised: 08/13/2024] [Accepted: 08/14/2024] [Indexed: 08/20/2024]
Abstract
This study explores the integration of crop phenology models and machine learning approaches for predicting rice phenology across China, to gain a deeper understanding of rice phenology prediction. Multiple approaches were used to predict heading and maturity dates at 337 locations across the main rice growing regions of China from 1981 to 2020, including crop phenology model, machine learning and hybrid model that integrate both approaches. Furthermore, an interpretable machine learning (IML) using SHapley Additive exPlanation (SHAP) was employed to elucidate influence of climatic and varietal factors on uncertainty in crop phenology model predictions. Overall, the hybrid model demonstrated a high accuracy in predicting rice phenology, followed by machine learning and crop phenology models. The best hybrid model, based on a serial structure and the eXtreme Gradient Boosting (XGBoost) algorithm, achieved a root mean square error (RMSE) of 4.65 and 5.72 days and coefficient of determination (R2) values of 0.93 and 0.9 for heading and maturity predictions, respectively. SHAP analysis revealed temperature to be the most influential climate variable affecting phenology predictions, particularly under extreme temperature conditions, while rainfall and solar radiation were found to be less influential. The analysis also highlighted the variable importance of climate across different phenological stages, rice cultivation patterns, and geographic regions, underscoring the notable regionality. The study proposed that a hybrid model using an IML approach would not only improve the accuracy of prediction but also offer a robust framework for leveraging data-driven in crop modeling, providing a valuable tool for refining and advancing the modeling process in rice.
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Affiliation(s)
- Jinhan Zhang
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China
| | - Xiaomao Lin
- Department of Agronomy, Kansas State University, 2108 Throckmorton Plant Sciences Center, Manhattan, KS 66506, USA
| | - Chongya Jiang
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China
| | - Xuntao Hu
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China
| | - Bing Liu
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China
| | - Leilei Liu
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China
| | - Liujun Xiao
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China
| | - Yan Zhu
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China
| | - Weixing Cao
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China
| | - Liang Tang
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China.
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27
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Nishio Z, Kurushima M, Suzuki T, Shimoda S, Hirota T. Effects of Temperature, Precipitation, and Sunshine on Cold-Tolerant Wheat Yield Under Warming Trends: A 20-Year Study in Hokkaido, Japan. PLANTS (BASEL, SWITZERLAND) 2024; 13:3165. [PMID: 39599376 PMCID: PMC11598266 DOI: 10.3390/plants13223165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2024] [Revised: 11/02/2024] [Accepted: 11/08/2024] [Indexed: 11/29/2024]
Abstract
To clarify the adaptation strategies of cold-tolerant wheat against global warming, this study examined the effects of daily temperature, precipitation, and sunshine duration on wheat yield in Hokkaido, Japan, over 13 years (2011-2023). Yield components were also analyzed over 20 years (2004-2023). The number of snow-cover days decreased by about 24 days over the 20-year period. As a result, the growth of overwintered wheat accelerated, with the heading and maturity of plants advancing by about 8 and 5 days, respectively, and the grain-filling period extending from about 44 to about 48 days. Multiple regression analysis was conducted using wheat yield as the objective variable and weather conditions as explanatory variables. Three weather conditions were selected: precipitation for 8 days from 27 March, sunshine hours for 8 days from 21 March, and sunshine hours for 12 days from 13 June, which yielded a coefficient of determination of 0.953. Despite the highest mean summer temperatures on record being registered in 2023, high yields were ensured by the number of sunshine hours, which were approximately 1.5 times the normally recorded hours. This highlights the importance of this parameter in mitigating the impact of high summer temperatures.
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Affiliation(s)
- Zenta Nishio
- Department of Agriculture, Tokyo University of Agriculture, Atsugi 243-0034, Kanagawa, Japan
| | - Masatomo Kurushima
- Hokkaido Research Organization (HRO), Tokachi Agricultural Experimental Station, Memuro 082-0081, Hokkaido, Japan
| | - Takeshi Suzuki
- Hokkaido Research Organization (HRO), Tokachi Agricultural Experimental Station, Memuro 082-0081, Hokkaido, Japan
| | - Seiji Shimoda
- National Agricultural Research Organization (NARO), Hokkaido Agricultural Research Center, Memuro 082-0081, Hokkaido, Japan
| | - Tomoyoshi Hirota
- Graduate School Bioresource and Bioenvironmental Sciences, Kyushu University, Nishi-ku, Fukuoka 819-0382, Fukuoka, Japan
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28
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Kala-Satheesh HK, Kuriyedath D, Jaleel J, Rahman EPN, Sathyan AR, Khed VD, Cariappa AGA, Krishna VV. Seed market dynamics and diffusion of new wheat varieties in Bihar, India: a supply-side perspective. AGRICULTURAL AND FOOD ECONOMICS 2024; 12:38. [PMID: 39539758 PMCID: PMC11554724 DOI: 10.1186/s40100-024-00330-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 08/31/2024] [Accepted: 09/08/2024] [Indexed: 11/16/2024]
Abstract
An examination of the dynamics of seed markets in Bihar, India, reveals a paradox-despite an influx of wheat varieties bred by public and private sectors and the proliferation of seed market networks in rural villages, older wheat varieties remain prevalent-necessitating a thorough investigation of the seed distribution system. Unlike most empirical studies that examine the adoption of new and improved crop varieties from a farmer's perspective, our study shifts the focus to the seed supply side. We analyse data collected from 200 private seed dealers who cater to the needs of over 163,000 farmers spread across 10 districts in Bihar. We use descriptive statistics alongside dealer-level and varietal-level regression models to examine the relationship between seed sales and varietal age. Findings indicate that the number of varieties available with a dealer (varietal richness) is positively associated with the number of seed buyers (dealer's reach) and the total quantity of seeds sold. Private varieties are in demand despite their higher prices. Dealer-level models showed that varietal age affects neither the reach nor the sales, allowing older public-sector varieties to coexist with more recent private-sector ones. However, the varietal-level regression models show that dealers rank the new varieties higher as the ones being sold more. To explore the potential of private seed markets to reduce the proliferation of old wheat varieties that are more susceptible to evolving biotic and abiotic stress factors, we recommend strengthening the varietal registration and seed certification processes, implementing better seed traceability systems, and fostering public-private partnerships in variety development and seed dissemination. Investing in market experiments to incentivize seed dealers to engage in quality assurance can help refine strategies and ensure efficient and inclusive dissemination of promising wheat varieties. Supplementary Information The online version contains supplementary material available at 10.1186/s40100-024-00330-w.
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Affiliation(s)
- Hari Krishnan Kala-Satheesh
- Department of Agricultural Statistics, Uttar Banga Krishi Viswavidyalaya (UBKV), Pundibari, Kalarayerkuthi, Cooch Behar, West Bengal 736165 India
| | - Drisya Kuriyedath
- Sustainable Agri-Food Systems (SAS) Program, International Maize and Wheat Improvement Center (CIMMYT), #303, ICRISAT Campus, Patancheru, Hyderabad, Telangana 502324 India
| | - Jesna Jaleel
- Department of Agricultural Economics, College of Agriculture, Professor Jayashankar Telangana State Agricultural University (PJTSAU), Rajendra Nagar, Hyderabad, Telangana 500030 India
| | - E. P. Nihal Rahman
- Sustainable Agri-Food Systems (SAS) Program, International Maize and Wheat Improvement Center (CIMMYT), #303, ICRISAT Campus, Patancheru, Hyderabad, Telangana 502324 India
| | - Archana Raghavan Sathyan
- Department of Agricultural Extension, College of Agriculture, Kerala Agricultural University, Vellayani, Thiruvananthapuram, 695522 India
| | - Vijayalaxmi D. Khed
- Sustainable Agri-Food Systems (SAS) Program, International Maize and Wheat Improvement Center (CIMMYT), #303, ICRISAT Campus, Patancheru, Hyderabad, Telangana 502324 India
| | - A. G. Adeeth Cariappa
- Sustainable Agri-Food Systems (SAS) Program, International Maize and Wheat Improvement Center (CIMMYT), #303, ICRISAT Campus, Patancheru, Hyderabad, Telangana 502324 India
| | - Vijesh V. Krishna
- Sustainable Agri-Food Systems (SAS) Program, International Maize and Wheat Improvement Center (CIMMYT), #303, ICRISAT Campus, Patancheru, Hyderabad, Telangana 502324 India
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Li N, Zhao Y, Han J, Yang Q, Liang J, Liu X, Wang Y, Huang Z. Impacts of future climate change on rice yield based on crop model simulation-A meta-analysis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 949:175038. [PMID: 39059663 DOI: 10.1016/j.scitotenv.2024.175038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 07/17/2024] [Accepted: 07/23/2024] [Indexed: 07/28/2024]
Abstract
Rice is one of the world's major food crops. Changes in major climatic factors such as temperature, rainfall, solar radiation and carbon dioxide (CO2) concentration have an important impact on rice growth and yield. However, many of the current studies that predict the impact of future climate change on rice yield are affected by uncertainties such as climate models, climate scenarios, model parameters and structure, and showing great differences. This study was based on the assessment results of the impact of climate change on rice in the future of 111 published literature, and comprehensively analyzed the impact and uncertainty of climate change on rice yield. This study utilized local polynomial (Loess) regression analysis to investigate the impact of changes in mean temperature, minimum temperature, maximum temperature, solar radiation, and precipitation on relative rice yield variations within a complete dataset. A linear mixed-effects model was used to quantitatively analyze the relationships between the restricted datasets. The qualitative analysis based on the entire dataset revealed that rice yields decreased with increasing average temperature. The precipitation changed between 0 and 25 %, it was conducive to the stable production of rice, and when the precipitation changed >25 %, it would cause rice yield reduction. The change of solar radiation was less than -1.15 %, the rice yield increases with the increase of solar radiation, and when the change of solar radiation exceeds -1.15 %, the rice yield decreases. Elevated CO2 concentrations and management practices could mitigate the negative effects of climate change. The results of a quantitative analysis utilizing the mixed effects model revealed that average temperature, precipitation, CO2 concentration, and adaptation methods all had a substantial impact on rice production, and elevated CO2 concentrations and management practices could exert positive influences on rice production. For every 1 °C and 1 % increase in average temperature and precipitation, rice yield decreased by 3.85 % and 0.56 %, respectively. For every 100 ppm increase in CO2 concentration, rice yield increased by 7.1 %. The variation of rice yield under different climate models, study sites and climate scenarios had significant variability. Elevated CO2 concentrations and management practices could compensate for the negative effects of climate change, benefiting rice production. This study comprehensively collected and analyzed a wide range of literature and research, which provides an in-depth understanding of the impacts of climate change on rice production and informs future research and policy development.
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Affiliation(s)
- Na Li
- Faculty of Modern Agricultural Engineering, Kunming University of Science and Technology, Kunming 650500, PR China; Yunnan Provincial Field Scientific Observation and Research Station on Water-Soil-Crop System in Seasonal Arid Region, Kunming University of Science and Technology, Kunming 650500, PR China; Yunnan Provincial Key Laboratory of High-effciency Water Use and Green Production of Characteristic Crops in Universities, Kunming University of Science and Technology, Kunming 650500, PR China
| | - Yating Zhao
- Faculty of Modern Agricultural Engineering, Kunming University of Science and Technology, Kunming 650500, PR China; Yunnan Provincial Field Scientific Observation and Research Station on Water-Soil-Crop System in Seasonal Arid Region, Kunming University of Science and Technology, Kunming 650500, PR China; Yunnan Provincial Key Laboratory of High-effciency Water Use and Green Production of Characteristic Crops in Universities, Kunming University of Science and Technology, Kunming 650500, PR China
| | - Jinsheng Han
- Faculty of Civil Engineering and Mechanics, Kunming University of Science and Technology, Kunming 650500, PR China.
| | - Qiliang Yang
- Faculty of Modern Agricultural Engineering, Kunming University of Science and Technology, Kunming 650500, PR China; Yunnan Provincial Field Scientific Observation and Research Station on Water-Soil-Crop System in Seasonal Arid Region, Kunming University of Science and Technology, Kunming 650500, PR China; Yunnan Provincial Key Laboratory of High-effciency Water Use and Green Production of Characteristic Crops in Universities, Kunming University of Science and Technology, Kunming 650500, PR China
| | - Jiaping Liang
- Faculty of Modern Agricultural Engineering, Kunming University of Science and Technology, Kunming 650500, PR China; Yunnan Provincial Field Scientific Observation and Research Station on Water-Soil-Crop System in Seasonal Arid Region, Kunming University of Science and Technology, Kunming 650500, PR China; Yunnan Provincial Key Laboratory of High-effciency Water Use and Green Production of Characteristic Crops in Universities, Kunming University of Science and Technology, Kunming 650500, PR China
| | - Xiaogang Liu
- Faculty of Modern Agricultural Engineering, Kunming University of Science and Technology, Kunming 650500, PR China; Yunnan Provincial Field Scientific Observation and Research Station on Water-Soil-Crop System in Seasonal Arid Region, Kunming University of Science and Technology, Kunming 650500, PR China; Yunnan Provincial Key Laboratory of High-effciency Water Use and Green Production of Characteristic Crops in Universities, Kunming University of Science and Technology, Kunming 650500, PR China
| | - Yazhou Wang
- College of Hydraulic & Environmental Engineering, China Three Gorges University, Yichang 443002, PR China
| | - Zhengzhong Huang
- Haihe River Water Conservancy Commission, Ministry of Water Resources, Tianjin 300181, PR China
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30
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Fang L, Struik PC, Girousse C, Yin X, Martre P. Source-sink relationships during grain filling in wheat in response to various temperature, water deficit, and nitrogen deficit regimes. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:6563-6578. [PMID: 39021198 PMCID: PMC11522979 DOI: 10.1093/jxb/erae310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Accepted: 07/17/2024] [Indexed: 07/20/2024]
Abstract
Grain filling is a critical process for improving crop production under adverse conditions caused by climate change. Here, using a quantitative method, we quantified post-anthesis source-sink relationships of a large dataset to assess the contribution of remobilized pre-anthesis assimilates to grain growth for both biomass and nitrogen. The dataset came from 13 years of semi-controlled field experimentation, in which six bread wheat genotypes were grown at plot scale under contrasting temperature, water, and nitrogen regimes. On average, grain biomass was ~10% higher than post-anthesis above-ground biomass accumulation across regimes and genotypes. Overall, the estimated relative contribution (%) of remobilized assimilates to grain biomass became increasingly significant with increasing stress intensity, ranging from virtually nil to 100%. This percentage was altered more by water and nitrogen regimes than by temperature, indicating the greater impact of water or nitrogen regimes relative to high temperatures under our experimental conditions. Relationships between grain nitrogen demand and post-anthesis nitrogen uptake were generally insensitive to environmental conditions, as there was always significant remobilization of nitrogen from vegetative organs, which helped to stabilize the amount of grain nitrogen. Moreover, variations in the relative contribution of remobilized assimilates with environmental variables were genotype dependent. Our analysis provides an overall picture of post-anthesis source-sink relationships and pre-anthesis assimilate contributions to grain filling across (non-)environmental factors, and highlights that designing wheat adaptation to climate change should account for complex multifactor interactions.
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Affiliation(s)
- Liang Fang
- Centre for Crop Systems Analysis, Wageningen University & Research, Wageningen, The Netherlands
| | - Paul C Struik
- Centre for Crop Systems Analysis, Wageningen University & Research, Wageningen, The Netherlands
| | | | - Xinyou Yin
- Centre for Crop Systems Analysis, Wageningen University & Research, Wageningen, The Netherlands
| | - Pierre Martre
- LEPSE, Université Montpellier, INRAE, Institut Agro Montpellier, Montpellier, France
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31
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Gulino D, Lopes MS. Phenological Adaptation of Wheat Varieties to Rising Temperatures: Implications for Yield Components and Grain Quality. PLANTS (BASEL, SWITZERLAND) 2024; 13:2929. [PMID: 39458876 PMCID: PMC11510792 DOI: 10.3390/plants13202929] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Revised: 10/14/2024] [Accepted: 10/15/2024] [Indexed: 10/28/2024]
Abstract
This study examined the effects of late sowing, water restrictions, and interannual weather variations on wheat grain yield and quality through field trials in Spain over two growing seasons. Delayed sowing and water scarcity significantly reduced yields, with grain quality mainly affected under rainfed conditions. Early-maturing varieties performed better in these conditions, benefiting from lower temperatures and extended grain-filling periods, leading to higher solar radiation interception, potentially increased photosynthetic activity, and improved yields. These varieties also saved water through reduced total cumulative evapotranspiration from sowing to maturity (ETo TOT), which was advantageous in water-limited environments. In contrast, late-maturing varieties were exposed to higher maximum temperatures during grain filling and experienced greater ETo TOT, leading to lower yields, reduced hectoliter weight, and a lower P/L ratio (tenacity/extensibility). This study highlighted the importance of optimizing temperature exposure and evapotranspiration for improved grain yield and quality, especially under climate change conditions with higher temperatures and water shortages. Notably, it established, for the first time, the importance of phenology on wheat quality of different varieties, suggesting that targeted selection for specific phenology could mitigate the negative impacts of heat stress not only on grain yield but also on grain quality.
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Affiliation(s)
| | - Marta S. Lopes
- Sustainable Field Crops Program, Institute of Agrifood Research and Technology (IRTA), 25198 Lleida, Spain;
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Rezaei EE, Faye B, Ewert F, Asseng S, Martre P, Webber H. Impact of coupled input data source-resolution and aggregation on contributions of high-yielding traits to simulated wheat yield. Sci Rep 2024; 14:23172. [PMID: 39369136 PMCID: PMC11455967 DOI: 10.1038/s41598-024-74309-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Accepted: 09/25/2024] [Indexed: 10/07/2024] Open
Abstract
High-yielding traits can potentially improve yield performance under climate change. However, data for these traits are limited to specific field sites. Despite this limitation, field-scale calibrated crop models for high-yielding traits are being applied over large scales using gridded weather and soil datasets. This study investigates the implications of this practice. The SIMPLACE modeling platform was applied using field, 1 km, 25 km, and 50 km input data resolution and sources, with 1881 combinations of three traits [radiation use efficiency (RUE), light extinction coefficient (K), and fruiting efficiency (FE)] for the period 2001-2010 across Germany. Simulations at the grid level were aggregated to the administrative units, enabling the quantification of the aggregation effect. The simulated yield increased by between 1.4 and 3.1 t ha- 1 with a maximum RUE trait value, compared to a control cultivar. No significant yield improvement (< 0.4 t ha- 1) was observed with increases in K and FE alone. Utilizing field-scale input data showed the greatest yield improvement per unit increment in RUE. Resolution of water related inputs (soil characteristics and precipitation) had a notably higher impact on simulated yield than of temperature. However, it did not alter the effects of high-yielding traits on yield. Simulated yields were only slightly affected by data aggregation for the different trait combinations. Warm-dry conditions diminished the benefits of high-yielding traits, suggesting that benefits from high-yielding traits depend on environments. The current findings emphasize the critical role of input data resolution and source in quantifying a large-scale impact of high-yielding traits.
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Affiliation(s)
- Ehsan Eyshi Rezaei
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany.
| | - Babacar Faye
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany
- University of Sine Saloum EL-HÂDJ IBRAHIMA NIASS, Kaolack, Senegal
| | - Frank Ewert
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany
- Crop Science Group, University of Bonn, Institute of Crop Science and Resource Conservation (INRES), Bonn, Germany
| | - Senthold Asseng
- Department of Life Science Engineering, Technical University of Munich, Digital Agriculture, HEF World Agricultural Systems Center, Freising, Germany
| | - Pierre Martre
- LEPSE, Université Montpellier, INRAE, Institut Agro Montpellier, Montpellier, France
| | - Heidi Webber
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany
- Institute of Environmental Sciences, Brandenburg University of Technology, Cottbus, Germany
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33
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Kusmec A, Schnable PS. Phenological Adaptation Is Insufficient to Offset Climate Change-Induced Yield Losses in US Hybrid Maize. GLOBAL CHANGE BIOLOGY 2024; 30:e17539. [PMID: 39434407 DOI: 10.1111/gcb.17539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 09/04/2024] [Accepted: 09/12/2024] [Indexed: 10/23/2024]
Abstract
Climate change is projected to decrease maize yields due to warmer temperatures and their consequences. Studies using crop growth models (CGMs), however, have predicted that, through a combination of alterations to planting date, flowering time, and maturity, these yield losses can be mitigated or even reversed. Here, we examine three assumptions of such studies: (1) that climate has driven historical phenological trends, (2) that CGM ensembles provide unbiased estimates of yields under high temperatures, and (3) that the effects of temperature on yields are an emergent property of interactions between phenology and environment. We used data on maize phenology from the United States Department of Agriculture, a statistical model of maize hybrid heat tolerance derived from 80 years of public yield trial records across four US states, and outputs of an ensemble of CMIP6 climate models. While planting dates have advanced historically, we found a trend toward later planting dates after 2005 and no trend for silking or maturity, shifting more time into the reproductive period. We then projected maize yields using the historical model and crop calendars devised using three previously proposed adaptation strategies. In contrast to studies using CGMs, our statistical yield model projected severe yield losses under all three strategies. Finally, we projected maize yields accounting for historical genetic variability for heat tolerance, discovering that it was insufficient to overcome the negative effects of projected warming. These projections are driven by greater heat stress exposure under all crop calendars and climate scenarios. Combined with analysis of the internal sensitivities of CGMs to temperature, our results suggest that current projections do not adequately account for the effects of increasing temperatures on maize yields. Climate adaptation in the US Midwest must utilize a richer set of strategies than phenological adaptation, including improvements to heat tolerance and crop diversification.
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Affiliation(s)
- Aaron Kusmec
- Department of Agronomy, Iowa State University, Ames, Iowa, USA
- Department of Agronomy, Kansas State University, Manhattan, Kansas, USA
| | - Patrick S Schnable
- Department of Agronomy, Iowa State University, Ames, Iowa, USA
- Plant Sciences Institute, Iowa State University, Ames, Iowa, USA
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34
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Han Y, Zhao Y, Wang J. Unveiling geospatial heterogeneity in climate's impacts on wheat production to advance spatially-matched climate-adaptive agricultural management in the North China plain. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 369:122364. [PMID: 39236610 DOI: 10.1016/j.jenvman.2024.122364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2024] [Revised: 07/24/2024] [Accepted: 08/30/2024] [Indexed: 09/07/2024]
Abstract
Influence of climate change on the geospatial heterogeneity in agricultural production remains poorly understood. In this study, heterogeneity in climate's impacts on wheat production across the North China Plain (NCP) was explored by integrating APSIM model, process-based factor-control quantitative approach, and geostatistical analyses. The results indicated that increased precipitation and minimum temperature boosted yields, while elevated maximum temperature and reduced radiation exerted adverse effects. The most pronounced negative impact arose from the coupling variation between maximum temperature and radiation, contributing to yields' variations of -5.84% from 2000 to 2010 and -5.22% from 2010 to 2020. In last two decades, climate change has augmented the overall geospatial heterogeneity degree in wheat yields. The chief factor contributing to yields' heterogeneity was the maximum temperature during anthesis-maturation stage, explaining an average of 37.6% of yields' heterogeneity, followed by precipitation throughout the whole growth period and the anthesis-maturation stage, explaining 36.1% and 34.5% respectively. A reciprocal enhancement mechanism exists between factors in driving yields' heterogeneity. Wheat yields in the southwestern NCP benefited more from increased precipitation and minimum temperature. Between 2000 and 2010, yields in the central NCP (junctions of Henan, Hebei, and Shandong) experienced the most pronounced adverse impact from increased maximum temperature. However, by 2010-2020, significant adverse impact shifted to western NCP, expanding spatially. During 2010-2020, the geospatial scope of radiation's significant negative impact expanded compared to the preceding decade, particularly affecting the yields in central and eastern NCP. The identified geospatial heterogeneity pattern of climate's impacts can guide spatially-matched climate-adaptive management adjustments. For instance, intensifying the defense against high-temperature's impacts in northwestern Henan, southern Hebei, and western Shandong, while improving the adaptation to radiation reduction in the central and eastern NCP. The findings are expected to advance regional-scale climate-smart agricultural development.
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Affiliation(s)
- Yang Han
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing, 100000, China; Farmland Irrigation Research Institute, Chinese Academy of Agricultural Sciences, Xinxiang, 453002, China.
| | - Yulong Zhao
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing, 100000, China; Farmland Irrigation Research Institute, Chinese Academy of Agricultural Sciences, Xinxiang, 453002, China
| | - Jinglei Wang
- Farmland Irrigation Research Institute, Chinese Academy of Agricultural Sciences, Xinxiang, 453002, China.
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35
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Deines JM, Archontoulis SV, Huber I, Lobell DB. Observational evidence for groundwater influence on crop yields in the United States. Proc Natl Acad Sci U S A 2024; 121:e2400085121. [PMID: 39186643 PMCID: PMC11388334 DOI: 10.1073/pnas.2400085121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Accepted: 07/03/2024] [Indexed: 08/28/2024] Open
Abstract
As climate change shifts crop exposure to dry and wet extremes, a better understanding of factors governing crop response is needed. Recent studies identified shallow groundwater-groundwater within or near the crop rooting zone-as influential, yet existing evidence is largely based on theoretical crop model simulations, indirect or static groundwater data, or small-scale field studies. Here, we use observational satellite yield data and dynamic water table simulations from 1999 to 2018 to provide field-scale evidence for shallow groundwater effects on maize yields across the United States Corn Belt. We identify three lines of evidence supporting groundwater influence: 1) crop model simulations better match observed yields after improvements in groundwater representation; 2) machine learning analysis of observed yields and modeled groundwater levels reveals a subsidy zone between 1.1 and 2.5 m depths, with yield penalties at shallower depths and no effect at deeper depths; and 3) locations with groundwater typically in the subsidy zone display higher yield stability across time. We estimate an average 3.4% yield increase when groundwater levels are at optimum depth, and this effect roughly doubles in dry conditions. Groundwater yield subsidies occur ~35% of years on average across locations, with 75% of the region benefitting in at least 10% of years. Overall, we estimate that groundwater-yield interactions had a net monetary contribution of approximately $10 billion from 1999 to 2018. This study provides empirical evidence for region-wide groundwater yield impacts and further underlines the need for better quantification of groundwater levels and their dynamic responses to short- and long-term weather conditions.
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Affiliation(s)
- Jillian M Deines
- Department of Earth System Science, Center on Food Security and the Environment, Stanford University, Stanford, CA 94305
- Earth Systems Predictability and Resiliency Group, Pacific Northwest National Laboratory, Richland, WA 99354
| | | | - Isaiah Huber
- Department of Agronomy, Iowa State University, Ames, IA 50011
| | - David B Lobell
- Department of Earth System Science, Center on Food Security and the Environment, Stanford University, Stanford, CA 94305
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36
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Lopez BNK, Ceciliato PHO, Takahashi Y, Rangel FJ, Salem EA, Kernig K, Chow K, Zhang L, Sidhom MA, Seitz CG, Zheng T, Sibout R, Laudencia-Chingcuanco DL, Woods DP, McCammon JA, Vogel JP, Schroeder JI. CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure. PLANT PHYSIOLOGY 2024; 196:495-510. [PMID: 38709683 DOI: 10.1093/plphys/kiae262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Revised: 04/15/2024] [Accepted: 04/16/2024] [Indexed: 05/08/2024]
Abstract
Plants respond to increased CO2 concentrations through stomatal closure, which can contribute to increased water use efficiency. Grasses display faster stomatal responses than eudicots due to dumbbell-shaped guard cells flanked by subsidiary cells working in opposition. However, forward genetic screening for stomatal CO2 signal transduction mutants in grasses has yet to be reported. The grass model Brachypodium distachyon is closely related to agronomically important cereal crops, sharing largely collinear genomes. To gain insights into CO2 control mechanisms of stomatal movements in grasses, we developed an unbiased forward genetic screen with an EMS-mutagenized B. distachyon M5 generation population using infrared imaging to identify plants with altered leaf temperatures at elevated CO2. Among isolated mutants, a "chill1" mutant exhibited cooler leaf temperatures than wild-type Bd21-3 parent control plants after exposure to increased CO2. chill1 plants showed strongly impaired high CO2-induced stomatal closure despite retaining a robust abscisic acid-induced stomatal closing response. Through bulked segregant whole-genome sequencing analyses followed by analyses of further backcrossed F4 generation plants and generation and characterization of sodium azide and CRISPR-cas9 mutants, chill1 was mapped to a protein kinase, Mitogen-Activated Protein Kinase 5 (BdMPK5). The chill1 mutation impaired BdMPK5 protein-mediated CO2/HCO3- sensing together with the High Temperature 1 (HT1) Raf-like kinase in vitro. Furthermore, AlphaFold2-directed structural modeling predicted that the identified BdMPK5-D90N chill1 mutant residue is located at the interface of BdMPK5 with the BdHT1 Raf-like kinase. BdMPK5 is a key signaling component that mediates CO2-induced stomatal movements and is proposed to function as a component of the primary CO2 sensor in grasses.
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Affiliation(s)
- Bryn N K Lopez
- School of Biological Sciences, Cell and Developmental Biology Department, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Paulo H O Ceciliato
- School of Biological Sciences, Cell and Developmental Biology Department, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Yohei Takahashi
- School of Biological Sciences, Cell and Developmental Biology Department, University of California San Diego, La Jolla, CA 92093-0116, USA
- Institute of Transformative Bio-Molecules (ITbM), Nagoya University, Nagoya, Aichi 464-0813, Japan
| | - Felipe J Rangel
- School of Biological Sciences, Cell and Developmental Biology Department, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Evana A Salem
- School of Biological Sciences, Cell and Developmental Biology Department, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Klara Kernig
- School of Biological Sciences, Cell and Developmental Biology Department, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Kelly Chow
- School of Biological Sciences, Cell and Developmental Biology Department, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Li Zhang
- School of Biological Sciences, Cell and Developmental Biology Department, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Morgana A Sidhom
- School of Biological Sciences, Cell and Developmental Biology Department, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Christian G Seitz
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA
| | - Tingwen Zheng
- School of Biological Sciences, Cell and Developmental Biology Department, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Richard Sibout
- Biopolymères Interactions Assemblages, Equipe Paroi Végétale et Polymères Pariétaux (PVPP), Impasse Y. Cauchois/Site de la Géraudière BP71627, Nantes 44316 cedex 03, France
| | | | - Daniel P Woods
- Department of Plant Sciences, University of California, Davis, CA 95616, USA
| | - James Andrew McCammon
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA
| | - John P Vogel
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Julian I Schroeder
- School of Biological Sciences, Cell and Developmental Biology Department, University of California San Diego, La Jolla, CA 92093-0116, USA
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Sandhu J, Irvin L, Chandaran AK, Oguro S, Paul P, Dhatt B, Hussain W, Cunningham SS, Quinones CO, Lorence A, Adviento-Borbe MA, Staswick P, Morota G, Walia H. Natural variation in LONELY GUY-Like 1 regulates rice grain weight under warmer night conditions. PLANT PHYSIOLOGY 2024; 196:164-180. [PMID: 38820200 PMCID: PMC11376391 DOI: 10.1093/plphys/kiae313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 05/10/2024] [Accepted: 05/11/2024] [Indexed: 06/02/2024]
Abstract
Global nighttime temperatures are rising at twice the rate of daytime temperatures and pose a challenge for rice (Oryza sativa) production. High nighttime temperature (HNT) stress affects rice yield by reducing grain weight, size, and fertility. Although the genes associated with these yield parameters have been identified and characterized under normal temperatures, the genetic basis of grain weight regulation under HNT stress remains less explored. We examined the natural variation for rice single grain weight (SGW) under HNT stress imposed during grain development. A genome-wide association analysis identified several loci associated with grain weight under HNT stress. A locus, SGW1, specific to HNT conditions resolved to LONELY GUY-Like 1 (LOGL1), which encodes a putative cytokinin-activation enzyme. We demonstrated that LOGL1 contributes to allelic variation at SGW1. Accessions with lower LOGL1 transcript abundance had higher grain weight under HNT. This was supported by the higher grain weight of logl1-mutants relative to the wild type under HNT. Compared to logl1-mutants, LOGL1 over-expressers showed increased sensitivity to HNT. We showed that LOGL1 regulates the thiamin biosynthesis pathway, which is under circadian regulation, which in turn is likely perturbed by HNT stress. These findings provide a genetic source to enhance rice adaptation to warming night temperatures and improve our mechanistic understanding of HNT stress tolerance pathways.
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Affiliation(s)
- Jaspreet Sandhu
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
| | - Larissa Irvin
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
| | - Anil Kumar Chandaran
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
| | - Shohei Oguro
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
| | - Puneet Paul
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
| | - Balpreet Dhatt
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
| | - Waseem Hussain
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
- International Rice Research Institute (IRRI), Los Baños, Laguna 4031, Philippines
| | - Shannon S Cunningham
- Department of Chemistry and Physics, Arkansas Biosciences Institute, Arkansas State University, Jonesboro, AR 72467, USA
| | - Cherryl O Quinones
- Department of Chemistry and Physics, Arkansas Biosciences Institute, Arkansas State University, Jonesboro, AR 72467, USA
| | - Argelia Lorence
- Department of Chemistry and Physics, Arkansas Biosciences Institute, Arkansas State University, Jonesboro, AR 72467, USA
| | | | - Paul Staswick
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
| | - Gota Morota
- Department of Animal and Poultry Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
| | - Harkamal Walia
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
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Lee AMJ, Foong MYM, Song BK, Chew FT. Genomic selection for crop improvement in fruits and vegetables: a systematic scoping review. MOLECULAR BREEDING : NEW STRATEGIES IN PLANT IMPROVEMENT 2024; 44:60. [PMID: 39267903 PMCID: PMC11391014 DOI: 10.1007/s11032-024-01497-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Accepted: 09/01/2024] [Indexed: 09/15/2024]
Abstract
To ensure the nutritional needs of an expanding global population, it is crucial to optimize the growing capabilities and breeding values of fruit and vegetable crops. While genomic selection, initially implemented in animal breeding, holds tremendous potential, its utilization in fruit and vegetable crops remains underexplored. In this systematic review, we reviewed 63 articles covering genomic selection and its applications across 25 different types of fruit and vegetable crops over the last decade. The traits examined were directly related to the edible parts of the crops and carried significant economic importance. Comparative analysis with WHO/FAO data identified potential economic drivers underlying the study focus of some crops and highlighted crops with potential for further genomic selection research and application. Factors affecting genomic selection accuracy in fruit and vegetable studies are discussed and suggestions made to assist in their implementation into plant breeding schemes. Genetic gain in fruits and vegetables can be improved by utilizing genomic selection to improve selection intensity, accuracy, and integration of genetic variation. However, the reduction of breeding cycle times may not be beneficial in crops with shorter life cycles such as leafy greens as compared to fruit trees. There is an urgent need to integrate genomic selection methods into ongoing breeding programs and assess the actual genomic estimated breeding values of progeny resulting from these breeding programs against the prediction models. Supplementary Information The online version contains supplementary material available at 10.1007/s11032-024-01497-2.
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Affiliation(s)
- Adrian Ming Jern Lee
- Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore, 117543 Republic of Singapore
- NUS Agritech Centre, National University of Singapore, 85 Science Park Dr, #01-03, Singapore, 118258 Republic of Singapore
| | - Melissa Yuin Mern Foong
- School of Science, Monash University Malaysia, Bandar Sunway, 47500 Subang Jaya, Selangor Darul Ehsan Malaysia
| | - Beng Kah Song
- School of Science, Monash University Malaysia, Bandar Sunway, 47500 Subang Jaya, Selangor Darul Ehsan Malaysia
| | - Fook Tim Chew
- Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore, 117543 Republic of Singapore
- NUS Agritech Centre, National University of Singapore, 85 Science Park Dr, #01-03, Singapore, 118258 Republic of Singapore
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Viet Ha TT, Zhou W. Response of the Northeast China grain market to climate change based on the gravity model approach. Heliyon 2024; 10:e36139. [PMID: 39224273 PMCID: PMC11366875 DOI: 10.1016/j.heliyon.2024.e36139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Revised: 08/04/2024] [Accepted: 08/09/2024] [Indexed: 09/04/2024] Open
Abstract
Scientific evidence has revealed that climate change negatively affects agricultural crop production both regionally and globally. Previous studies have indicated that the role of climate change is significant in some parts of China. Thus, assessing the impact of the future climate on the grain market is vital for ensuring regional and national food security. In this study, regional climate model (RCM 4.5 and 8.5) simulations were employed to investigate the role of future climate change on a major grain-producing market in China (Northeast China). For this purpose, historical (2004-2017) and future (2020-2076) data were applied in the gravity model to examine the effects of climate change on the Northeast China grain market. The results revealed that the maximum temperature is a crucial climate factor that significantly affects the grain market. The analysis revealed that precipitation was positively related and that the temperature was significantly negatively related to domestic consumption and exports of rice, maize, and soybean. Moreover, the analysis of the RCM (4.5 and 8.5) simulations revealed a negative contribution of the maximum temperature to domestic consumption and export levels. Overall, the analysis enhances our understanding of the impacts of climate change on the Northeast China grain market.
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Affiliation(s)
- Trinh Thi Viet Ha
- College of Engineering, Northeast Agricultural University, Harbin, 150030, China
| | - Wenqi Zhou
- College of Engineering, Northeast Agricultural University, Harbin, 150030, China
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Khan A, Ahmad M, Shani MY, Khan MKR, Rahimi M, Tan DKY. Identifying the physiological traits associated with DNA marker using genome wide association in wheat under heat stress. Sci Rep 2024; 14:20134. [PMID: 39209932 PMCID: PMC11362520 DOI: 10.1038/s41598-024-70630-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 08/20/2024] [Indexed: 09/04/2024] Open
Abstract
Heat stress poses a significant environmental challenge that profoundly impacts wheat productivity. It disrupts vital physiological processes such as photosynthesis, by impeding the functionality of the photosynthetic apparatus and compromising plasma membrane stability, thereby detrimentally affecting grain development in wheat. The scarcity of identified marker trait associations pertinent to thermotolerance presents a formidable obstacle in the development of marker-assisted selection strategies against heat stress. To address this, wheat accessions were systematically exposed to both normal and heat stress conditions and phenotypic data were collected on physiological traits including proline content, canopy temperature depression, cell membrane injury, photosynthetic rate, transpiration rate (at vegetative and reproductive stage and 'stay-green'. Principal component analysis elucidated the most significant contributors being proline content, transpiration rate, and canopy temperature depression, which exhibited a synergistic relationship with grain yield. Remarkably, cluster analysis delineated the wheat accessions into four discrete groups based on physiological attributes. Moreover, to explore the relationship between physiological traits and DNA markers, 158 wheat accessions were genotyped with 186 SSRs. Allelic frequency and polymorphic information content value were found to be highest on genome A (4.94 and 0.688), chromosome 1A (5.00 and 0.712), and marker Xgwm44 (13.0 and 0.916). Population structure, principal coordinate analysis and cluster analysis also partitioned the wheat accessions into four subpopulations based on genotypic data, highlighting their genetic homogeneity. Population diversity and presence of linkage disequilibrium established the suitability of population for association mapping. Additionally, linkage disequilibrium decay was most pronounced within a 15-20 cM region on chromosome 1A. Association mapping revealed highly significant marker trait associations at Bonferroni correction P < 0.00027. Markers Xwmc418 (located on chromosome 3D) and Xgwm233 (chromosome 7A) demonstrated associations with transpiration rate, while marker Xgwm494 (chromosome 3A) exhibited an association with photosynthetic rates at both vegetative and reproductive stages under heat stress conditions. Additionally, markers Xwmc201 (chromosome 6A) and Xcfa2129 (chromosome 1A) displayed robust associations with canopy temperature depression, while markers Xbarc163 (chromosome 4B) and Xbarc49 (chromosome 5A) were strongly associated with cell membrane injury at both stages. Notably, marker Xbarc49 (chromosome 5A) exhibited a significant association with the 'stay-green' trait under heat stress conditions. These results offers the potential utility in marker-assisted selection, gene pyramiding and genomic selection models to predict performance of wheat accession under heat stress conditions.
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Affiliation(s)
- Adeel Khan
- Plant Breeding and Genetics Division, Nuclear Institute for Agriculture and Biology (NIAB), Faisalabad, 38950, Pakistan.
- Pakistan Institute of Engineering and Applied Sciences, Islamabad, Pakistan.
- Department of Plant Breeding and Genetics, PMAS-Arid Agriculture University, Rawalpindi, 46300, Pakistan.
| | - Munir Ahmad
- Department of Plant Breeding and Genetics, PMAS-Arid Agriculture University, Rawalpindi, 46300, Pakistan
| | - Muhammad Yousaf Shani
- Plant Breeding and Genetics Division, Nuclear Institute for Agriculture and Biology (NIAB), Faisalabad, 38950, Pakistan
- Pakistan Institute of Engineering and Applied Sciences, Islamabad, Pakistan
| | - Muhammad Kashif Riaz Khan
- Plant Breeding and Genetics Division, Nuclear Institute for Agriculture and Biology (NIAB), Faisalabad, 38950, Pakistan
- Pakistan Institute of Engineering and Applied Sciences, Islamabad, Pakistan
| | - Mehdi Rahimi
- Department of Biotechnology, Institute of Science and High Technology and Environmental Sciences, Graduate University of Advanced Technology, Kerman, Iran.
| | - Daniel K Y Tan
- Plant Breeding Institute, Sydney Institute of Agriculture, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, 2006, Australia
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Zhao Y, Xiao L, Tang Y, Yao X, Cheng T, Zhu Y, Cao W, Tian Y. Spatio-temporal change of winter wheat yield and its quantitative responses to compound frost-dry events - An example of the Huang-Huai-Hai Plain of China from 2001 to 2020. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 940:173531. [PMID: 38821277 DOI: 10.1016/j.scitotenv.2024.173531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 04/21/2024] [Accepted: 05/24/2024] [Indexed: 06/02/2024]
Abstract
Extreme climate events such as frost and drought have great influence on wheat growth and yield. Understanding the effects of frost, drought and compound frost-dry events on wheat growth and yield is of great significance for ensuring national food security. In this study, wheat yield prediction model (SCYMvp) was developed by combining crop growth model (CGM), satellite images and meteorological variables. Wheat yield maps in the Huang-Huai-Hai Plain (HHHP) during 2001-2020 were generated using SCYMvp model. Meanwhile, accumulative frost days (AFD), accumulative dry days (ADD) and accumulative frost-dry days (AFDD) in different growth periods of wheat were calculated, and the effects of frost and drought on wheat yield were quantified by the first difference method and linear mixed model. The results showed that wheat yield increased significantly, while the rising trend was obvious at more than half of the regions. Extreme climate events (ECEs) showed a relatively stable change trend, although the change trend was significant only in a few areas. Compared with frost and drought in the early growth period, ECEs in the middle growth period (spring ECEs) had more negative effects on wheat growth and yield. Wheat yield was negatively correlated with spring ECEs, and yield loss was between 4.6 and 49.8 kg/ha for each 1 d increase of spring ECEs. The effects of spring ECEs on wheat yield were ranked as AFDD > AFD > ADD. The negative effect of ADD on wheat yield in the late growth period was higher than that in the other periods. The negative effects of spring ECEs on yield in southern regions were higher than those in northern regions. Overall, due to the adverse effects of frost and drought on wheat yield in the middle and late growth periods, the mean annual yield loss was 6.4 %, among which spring AFD caused the greatest loss to wheat yield (3.1 %). The results have important guiding significance for formulating climate adaptation management strategies.
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Affiliation(s)
- Yanxi Zhao
- National Engineering and Technology Center for Information Agriculture, Key Laboratory for Crop System Analysis and Decision Making, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, 1 Weigang Road, Nanjing, Jiangsu 210095, China
| | - Liujun Xiao
- National Engineering and Technology Center for Information Agriculture, Key Laboratory for Crop System Analysis and Decision Making, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, 1 Weigang Road, Nanjing, Jiangsu 210095, China
| | - Yining Tang
- National Engineering and Technology Center for Information Agriculture, Key Laboratory for Crop System Analysis and Decision Making, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, 1 Weigang Road, Nanjing, Jiangsu 210095, China
| | - Xia Yao
- National Engineering and Technology Center for Information Agriculture, Key Laboratory for Crop System Analysis and Decision Making, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, 1 Weigang Road, Nanjing, Jiangsu 210095, China
| | - Tao Cheng
- National Engineering and Technology Center for Information Agriculture, Key Laboratory for Crop System Analysis and Decision Making, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, 1 Weigang Road, Nanjing, Jiangsu 210095, China
| | - Yan Zhu
- National Engineering and Technology Center for Information Agriculture, Key Laboratory for Crop System Analysis and Decision Making, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, 1 Weigang Road, Nanjing, Jiangsu 210095, China
| | - Weixing Cao
- National Engineering and Technology Center for Information Agriculture, Key Laboratory for Crop System Analysis and Decision Making, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, 1 Weigang Road, Nanjing, Jiangsu 210095, China
| | - Yongchao Tian
- National Engineering and Technology Center for Information Agriculture, Key Laboratory for Crop System Analysis and Decision Making, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, 1 Weigang Road, Nanjing, Jiangsu 210095, China.
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Vicente-Serrano SM, Juez C, Potopová V, Boincean B, Murphy C, Domínguez-Castro F, Eklundh L, Peña-Angulo D, Noguera I, Jin H, Conradt T, Garcia-Herrera R, Garrido-Perez JM, Barriopedro D, Gutiérrez JM, Iturbide M, Lorenzo-Lacruz J, Kenawy AE. Drought risk in Moldova under global warming and possible crop adaptation strategies. Ann N Y Acad Sci 2024; 1538:144-161. [PMID: 39086254 DOI: 10.1111/nyas.15201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2024]
Abstract
This study analyzes the relationship between drought processes and crop yields in Moldova, together with the effects of possible future climate change on crops. The severity of drought is analyzed over time in Moldova using the Standard Precipitation Index, the Standardized Precipitation Evapotranspiration Index, and their relationship with crop yields. In addition, rainfall variability and its relationship with crop yields are examined using spectral analysis and squared wavelet coherence. Observed station data (1950-2020 and 1850-2020), ERA5 reanalysis data (1950-2020), and climate model simulations (period 1970-2100) are used. Crop yield data (maize, sunflower, grape), data from experimental plots (wheat), and the Enhanced Vegetation Index from Moderate Resolution Imaging Spectroradiometer satellites were also used. Results show that although the severity of meteorological droughts has decreased in the last 170 years, the impact of precipitation deficits on different crop yields has increased, concurrent with a sharp increase in temperature, which negatively affected crop yields. Annual crops are now more vulnerable to natural rainfall variability and, in years characterized by rainfall deficits, the possibility of reductions in crop yield increases due to sharp increases in temperature. Projections reveal a pessimistic outlook in the absence of adaptation, highlighting the urgency of developing new agricultural management strategies.
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Affiliation(s)
- Sergio M Vicente-Serrano
- Instituto Pirenaico de Ecología, Consejo Superior de Investigaciones Científicas (IPE-CSIC), Zaragoza, Spain
| | - Carmelo Juez
- Instituto Pirenaico de Ecología, Consejo Superior de Investigaciones Científicas (IPE-CSIC), Zaragoza, Spain
| | - Vera Potopová
- Department of Agroecology and Crop Production Czech Republic, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Praha, Czech Republic
- Global Change Research Institute of the Czech Academy of Sciences, Brno, Czech Republic
| | - Boris Boincean
- Selectia Research Institute of Field Crops, Balti, Moldova
| | - Conor Murphy
- Irish Climate Analysis and Research UnitS (ICARUS), Department of Geography, Maynooth University, Maynooth, Ireland
| | - Fernando Domínguez-Castro
- Instituto Pirenaico de Ecología, Consejo Superior de Investigaciones Científicas (IPE-CSIC), Zaragoza, Spain
| | - Lars Eklundh
- Department of Physical Geography and Ecosystem Science, Lund University, Lund, Sweden
| | | | - Ivan Noguera
- Centre of Ecology and Hydrology (CEH), Wallingford, UK
| | - Hongxiao Jin
- Department of Physical Geography and Ecosystem Science, Lund University, Lund, Sweden
| | - Tobias Conradt
- Potsdam Institute for Climate Impact Research, Potsdam, Germany
| | - Ricardo Garcia-Herrera
- Departamento de Ciencias de la Tierra y Astrofísica, Facultad de Ciencias Físicas, Universidad Complutense de Madrid, Madrid, Spain
- Instituto de Geociencias (IGEO), Consejo Superior de Investigaciones Científicas-Universidad Complutense de Madrid, Madrid, Spain
| | - Jose Manuel Garrido-Perez
- Departamento de Ciencias de la Tierra y Astrofísica, Facultad de Ciencias Físicas, Universidad Complutense de Madrid, Madrid, Spain
- Instituto de Geociencias (IGEO), Consejo Superior de Investigaciones Científicas-Universidad Complutense de Madrid, Madrid, Spain
| | - David Barriopedro
- Instituto de Geociencias (IGEO), Consejo Superior de Investigaciones Científicas-Universidad Complutense de Madrid, Madrid, Spain
| | - Jose M Gutiérrez
- Instituto de Física de Cantabria, Consejo Superior de Investigaciones Científicas (IFCA-CSIC), Santander, Spain
| | - Maialen Iturbide
- Instituto de Física de Cantabria, Consejo Superior de Investigaciones Científicas (IFCA-CSIC), Santander, Spain
| | - Jorge Lorenzo-Lacruz
- Department of Human Sciences, Area of Physical Geography, University of La Rioja, Logroño, Spain
| | - Ahmed El Kenawy
- Instituto Pirenaico de Ecología, Consejo Superior de Investigaciones Científicas (IPE-CSIC), Zaragoza, Spain
- Department of Geography, Mansoura University, Mansoura, Egypt
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43
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El-Shazoly RM, Hamed HMA, El-Sayed MM. Individual or successiveseed priming with nitric oxide and calcium toward enhancing salt tolerance of wheat crop through early ROS detoxification and activation of antioxidant defense. BMC PLANT BIOLOGY 2024; 24:730. [PMID: 39085769 PMCID: PMC11290230 DOI: 10.1186/s12870-024-05390-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Accepted: 07/05/2024] [Indexed: 08/02/2024]
Abstract
Despite the considerable efforts reported so far to enhance seed priming, novel ideas are still needed to be suggested to this sustainable sector of agri-seed industry. This could be the first study addressing the effect of nitric oxide (NO) under open field conditions. The impacts of seed redox-priming using sodium nitroprusside (SNP) and osmo-priming with calcium chloride (CaCl2), both applied individually or successively, were investigated under salinity stress conditions on wheat plants (Triticum aestivum L.). Various parameters, including water relations, growth, yield, photosynthetic pigments, and antioxidant activities (enzymatic and non-enzymatic), were recorded to assess the outcomes of these priming agents on mitigating the negative impacts of salinity stress on wheat plants. Water consumptive use (ETa) and irrigation water applied (IWA) decreased with seeds priming. Successive priming with SNP + CaCl2 induced the greatest values of crop water productivity (CWP), irrigation water productivity (IWP), seed index, grain yield and grain nitrogen content.Under salinity stress, the dry weight of plants was decreased. However, hydro-priming and successive chemical priming agents using combinations of calcium chloride and sodium nitroprusside (CaCl2 + SNP & SNP + CaCl2) preserved growth under salinity stress.Individual priming with sodium nitroprusside (SNP) and calcium chloride (CaCl2) resulted in the lowest recorded content of sodium in the shoot, with a value of 2 ppm. On the other hand, successive priming using CaCl2 + SNP or SNP + CaCl2 induced the contents of potassium in the shoot, with values of 40 ppm and 39 ppm, respectively. Malondialdehyde decreased in shoot significantly withapplicationof priming agents. Successive priming with CaCl2 + SNP induced the highest proline contents in shoot (6 µg/ g FW). The highest value of phenolics and total antioxidants contents in shoot were recorded under successive priming using CaCl2 + SNP and SNP + CaCl2.Priming agents improved the activities of ascorbate peroxidase and catalase enzymes. The successive priming improved water relations (ETa, IWA, CWP and IWP) and wheat growth and productivity under salinity stress more than individual priming treatments.
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Affiliation(s)
- Rasha M El-Shazoly
- Botany and Microbiology Department Faculty of Sciences, New Valley Univ, Al-Kharja, New Valley, 72511, Egypt.
| | - H M A Hamed
- Soils and Water Science Department, Faculty of Agriculture, Al-Azhar Univ, Assiut, Egypt
| | - Mahmoud M El-Sayed
- Soils and Water Science Department, Faculty of Agriculture, Al-Azhar Univ, Assiut, Egypt
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Mirosavljević M, Mikić S, Župunski V, Abdelhakim L, Trkulja D, Zhou R, Špika AK, Ottosen CO. Effects of Heat Stress during Anthesis and Grain Filling Stages on Some Physiological and Agronomic Traits in Diverse Wheat Genotypes. PLANTS (BASEL, SWITZERLAND) 2024; 13:2083. [PMID: 39124201 PMCID: PMC11314375 DOI: 10.3390/plants13152083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Revised: 07/25/2024] [Accepted: 07/26/2024] [Indexed: 08/12/2024]
Abstract
Heat stress represents a significant environmental challenge that adversely impacts the growth, physiology, and productivity of wheat. In order to determine the response to high temperatures of the wheat varieties developed mostly in the Pannonian environmental zone, as well as varietal differences, we subjected seven varieties from Serbia, one from Australia, and one from the UK to thermal stress during anthesis and mid-grain filling and combined stress during both of these periods. The changes in chlorophyll fluorescence and index, leaf temperature, and main agronomic traits of nine winter wheat varieties were investigated under high temperatures. Heat stress negatively affected leaf temperature, chlorophyll fluorescence, and the chlorophyll index during different growth stages. Compared to the control, stress at anthesis, mid-grain filling, and combined stress resulted in yield reductions of 32%, 46%, and 59%, respectively. Single treatment at anthesis had a more severe effect on the number of grains per plant, causing a 38% reduction compared to the control. Moreover, single treatment during mid-grain filling resulted in the greatest decline in grain weight, with a 29% reduction compared to the control. There was a significant varietal variation in heat tolerance, highlighting Avangarda and NS 40s as the most tolerant varieties that should be included in regular breeding programs as valuable sources of heat tolerance. Understanding the genetic and physiological mechanisms of heat tolerance in these promising varieties should be the primary focus of future research and help develop targeted breeding strategies and agronomic practices to mitigate the adverse effects of heat stress on wheat production.
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Affiliation(s)
- Milan Mirosavljević
- Institute of Field and Vegetable Crops, 21000 Novi Sad, Serbia; (M.M.); (S.M.); (V.Ž.); (D.T.)
| | - Sanja Mikić
- Institute of Field and Vegetable Crops, 21000 Novi Sad, Serbia; (M.M.); (S.M.); (V.Ž.); (D.T.)
| | - Vesna Župunski
- Institute of Field and Vegetable Crops, 21000 Novi Sad, Serbia; (M.M.); (S.M.); (V.Ž.); (D.T.)
| | - Lamis Abdelhakim
- Department of Food Science, Aarhus University, 8200 Aarhus, Denmark; (L.A.); (R.Z.); (C.-O.O.)
| | - Dragana Trkulja
- Institute of Field and Vegetable Crops, 21000 Novi Sad, Serbia; (M.M.); (S.M.); (V.Ž.); (D.T.)
| | - Rong Zhou
- Department of Food Science, Aarhus University, 8200 Aarhus, Denmark; (L.A.); (R.Z.); (C.-O.O.)
| | - Ankica Kondić Špika
- Institute of Field and Vegetable Crops, 21000 Novi Sad, Serbia; (M.M.); (S.M.); (V.Ž.); (D.T.)
| | - Carl-Otto Ottosen
- Department of Food Science, Aarhus University, 8200 Aarhus, Denmark; (L.A.); (R.Z.); (C.-O.O.)
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Khan S, Alvi AF, Fatma M, Al-Hashimi A, Sofo A, Khan NA. Relative effects of melatonin and hydrogen sulfide treatments in mitigating salt damage in wheat. FRONTIERS IN PLANT SCIENCE 2024; 15:1406092. [PMID: 39119490 PMCID: PMC11306083 DOI: 10.3389/fpls.2024.1406092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Accepted: 07/09/2024] [Indexed: 08/10/2024]
Abstract
Soil salinity poses a significant threat to agricultural productivity, impacting the growth and yield of wheat (Triticum aestivum L.) plants. This study investigates the potential of melatonin (MT; 100 µM) and hydrogen sulfide (H2S; 200 µM sodium hydrosulfide, NaHS) to confer the tolerance of wheat plants to 100 mM NaCl. Salinity stress induced the outburst of reactive oxygen species (ROS) resulting in damage to the chloroplast structure, growth, photosynthesis, and yield. Application of either MT or NaHS augmented the activity of antioxidant enzymes, superoxide dismutase, ascorbate peroxidase, glutathione reductase, and reduced glutathione (GSH) levels, upregulated the expression of Na+ transport genes (SOS1, SOS2, SOS3, NHX1), resulting in mitigation of salinity stress. Thus, improved stomatal behavior, gas-exchange parameters, and maintenance of chloroplast structure resulted in enhanced activity of the Calvin cycle enzymes and overall enhancement of growth, photosynthetic, and yield performance of plants under salinity stress. The use of DL-propargylglycine (PAG, an inhibitor of hydrogen sulfide biosynthesis) and p-chlorophenyl alanine (p-CPA, an inhibitor of melatonin biosynthesis) to plants under salt stress showed the comparative necessity of MT and H2S in mitigation of salinity stress. In the presence of PAG, more pronounced detrimental effects were observed than in the presence of p-CPA, emphasizing that MT was involved in mitigating salinity through various potential pathways, one of which was through H2S.
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Affiliation(s)
- Sheen Khan
- Plant Physiology and Biochemistry Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India
| | - Ameena Fatima Alvi
- Plant Physiology and Biochemistry Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India
| | - Mehar Fatma
- Plant Physiology and Biochemistry Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India
| | - Abdulrahman Al-Hashimi
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Adriano Sofo
- Department of European and Mediterranean Cultures, Architecture, Environment, Cultural Heritage (DiCEM), University of Basilicata, Matera, Italy
| | - Nafees A. Khan
- Plant Physiology and Biochemistry Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India
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Shelake RM, Wagh SG, Patil AM, Červený J, Waghunde RR, Kim JY. Heat Stress and Plant-Biotic Interactions: Advances and Perspectives. PLANTS (BASEL, SWITZERLAND) 2024; 13:2022. [PMID: 39124140 PMCID: PMC11313874 DOI: 10.3390/plants13152022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2024] [Revised: 07/11/2024] [Accepted: 07/22/2024] [Indexed: 08/12/2024]
Abstract
Climate change presents numerous challenges for agriculture, including frequent events of plant abiotic stresses such as elevated temperatures that lead to heat stress (HS). As the primary driving factor of climate change, HS threatens global food security and biodiversity. In recent years, HS events have negatively impacted plant physiology, reducing plant's ability to maintain disease resistance and resulting in lower crop yields. Plants must adapt their priorities toward defense mechanisms to tolerate stress in challenging environments. Furthermore, selective breeding and long-term domestication for higher yields have made crop varieties vulnerable to multiple stressors, making them more susceptible to frequent HS events. Studies on climate change predict that concurrent HS and biotic stresses will become more frequent and severe in the future, potentially occurring simultaneously or sequentially. While most studies have focused on singular stress effects on plant systems to examine how plants respond to specific stresses, the simultaneous occurrence of HS and biotic stresses pose a growing threat to agricultural productivity. Few studies have explored the interactions between HS and plant-biotic interactions. Here, we aim to shed light on the physiological and molecular effects of HS and biotic factor interactions (bacteria, fungi, oomycetes, nematodes, insect pests, pollinators, weedy species, and parasitic plants), as well as their combined impact on crop growth and yields. We also examine recent advances in designing and developing various strategies to address multi-stress scenarios related to HS and biotic factors.
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Affiliation(s)
- Rahul Mahadev Shelake
- Division of Applied Life Science (BK21 Four Program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 52828, Republic of Korea
| | - Sopan Ganpatrao Wagh
- Global Change Research Institute, Czech Academy of Sciences, Brno 60300, Czech Republic;
| | - Akshay Milind Patil
- Cotton Improvement Project, Mahatma Phule Krishi Vidyapeeth (MPKV), Rahuri 413722, India;
| | - Jan Červený
- Global Change Research Institute, Czech Academy of Sciences, Brno 60300, Czech Republic;
| | - Rajesh Ramdas Waghunde
- Department of Plant Pathology, College of Agriculture, Navsari Agricultural University, Bharuch 392012, India;
| | - Jae-Yean Kim
- Division of Applied Life Science (BK21 Four Program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 52828, Republic of Korea
- Division of Life Science, Gyeongsang National University, Jinju 52828, Republic of Korea
- Nulla Bio Inc., Jinju 52828, Republic of Korea
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Mazumder AK, Yadav R, Kumar M, Babu P, Kumar N, Singh SK, Solanke AU, Wani SH, Alalawy AI, Alasmari A, Gaikwad KB. Discovering novel genomic regions explaining adaptation of bread wheat to conservation agriculture through GWAS. Sci Rep 2024; 14:16351. [PMID: 39013994 PMCID: PMC11252282 DOI: 10.1038/s41598-024-66903-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Accepted: 07/05/2024] [Indexed: 07/18/2024] Open
Abstract
To sustainably increase wheat yield to meet the growing world population's food demand in the face of climate change, Conservation Agriculture (CA) is a promising approach. Still, there is a lack of genomic studies investigating the genetic basis of crop adaptation to CA. To dissect the genetic architecture of 19 morpho-physiological traits that could be involved in the enhanced adaptation and performance of genotypes under CA, we performed GWAS to identify MTAs under four contrasting production regimes viz., conventional tillage timely sown (CTTS), conservation agriculture timely sown (CATS), conventional tillage late sown (CTLS) and conservation agriculture late sown (CALS) using an association panel of 183 advanced wheat breeding lines along with 5 checks. Traits like Phi2 (Quantum yield of photosystem II; CATS:0.37, CALS: 0.31), RC (Relative chlorophyll content; CATS:55.51, CALS: 54.47) and PS1 (Active photosystem I centers; CATS:2.45, CALS: 2.23) have higher mean values in CA compared to CT under both sowing times. GWAS identified 80 MTAs for the studied traits across four production environments. The phenotypic variation explained (PVE) by these QTNs ranged from 2.15 to 40.22%. Gene annotation provided highly informative SNPs associated with Phi2, NPQ (Quantum yield of non-photochemical quenching), PS1, and RC which were linked with genes that play crucial roles in the physiological adaptation under both CA and CT. A highly significant SNP AX94651261 (9.43% PVE) was identified to be associated with Phi2, while two SNP markers AX94730536 (30.90% PVE) and AX94683305 (16.99% PVE) were associated with NPQ. Identified QTNs upon validation can be used in marker-assisted breeding programs to develop CA adaptive genotypes.
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Affiliation(s)
- Amit Kumar Mazumder
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Rajbir Yadav
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Manjeet Kumar
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Prashanth Babu
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Naresh Kumar
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Sanjay Kumar Singh
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | | | - Shabir H Wani
- Mountain Research Centre for Field Crops, Khudwani, 192101, India
- Sher-E-Kashmir University of Agricultural Sciences and Technology-Kashmir (SKUAST-K), Srinagar, Jammu-Kashmir, India
| | - Adel I Alalawy
- Department of Biochemistry, Faculty of Science, University of Tabuk, Tabuk, Saudi Arabia
| | - Abdulrahman Alasmari
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk, Saudi Arabia
| | - Kiran B Gaikwad
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
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Azameti MK, Tanuja N, Kumar S, Rathinam M, Imoro AWM, Singh PK, Gaikwad K, Sreevathsa R, Dalal M, Arora A, Rai V, Padaria JC. Transgenic tobacco plants overexpressing a wheat salt stress root protein (TaSSRP) exhibit enhanced tolerance to heat stress. Mol Biol Rep 2024; 51:791. [PMID: 38990430 DOI: 10.1007/s11033-024-09755-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 06/24/2024] [Indexed: 07/12/2024]
Abstract
BACKGROUND Heat stress is a detrimental abiotic stress that limits the development of many plant species and is linked to a variety of cellular and physiological problems. Heat stress affects membrane fluidity, which leads to negative effects on cell permeability and ion transport. Research reveals that heat stress causes severe damage to cells and leads to rapid accumulation of reactive oxygen species (ROS), which could cause programmed cell death. METHODS AND RESULTS This current study aimed to validate the role of Triticum aestivum Salt Stress Root Protein (TaSSRP) in plants' tolerance to heat stress by modulating its expression in tobacco plants. The Relative Water Content (RWC), total chlorophyll content, and Membrane Stability Index (MSI) of the seven distinct transgenic lines (T0 - 2, T0 - 3, T0 - 6, T0 - 8, T0 - 9, T0 - 11, and T0 - 13), increased in response to heat stress. Despite the fact that the same tendency was detected in wild-type (WT) plants, changes in physio-biochemical parameters were greater in transgenic lines than in WT plants. The expression analysis revealed that the transgene TaSSRP expressed from 1.00 to 1.809 folds in different lines in the transgenic tobacco plants. The gene TaSSRP offered resistance to heat stress in Nicotiana tabacum, according to the results of the study. CONCLUSION These findings could help to improve our knowledge and understanding of the mechanism underlying thermotolerance in wheat, and the novel identified gene TaSSRP could be used in generating wheat varieties with enhanced tolerance to heat stress.
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Affiliation(s)
- Mawuli K Azameti
- Department of Applied Biology, C. K. Tedam University of Technology and Applied Sciences, Navrongo, Ghana
| | - N Tanuja
- Directorate of Plant Protection, Quarantine and Storage, Faridabad, Haryana, India
| | - Satish Kumar
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
| | - Maniraj Rathinam
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
| | - Abdul-Wahab M Imoro
- Department of Forestry and Forest Resources Management, University for Development Studies, Tamale, Ghana
| | - P K Singh
- PG School, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
- Division of Genetics, Indian Agricultural Research Institute, Pusa, New Delhi, 110012, India
| | - Kishor Gaikwad
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
- PG School, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Rohini Sreevathsa
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
- PG School, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Monika Dalal
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
- PG School, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Ajay Arora
- PG School, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
- Division of Plant Physiology, Indian Agricultural Research Institute, Pusa, New Delhi, 110012, India
| | - Vandna Rai
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
- PG School, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Jasdeep C Padaria
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India.
- PG School, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
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Mutlu-Durak H, Arikan-Algul Y, Bayram E, Haznedaroglu BZ, Kutman UB, Kutman BY. Various extracts of the brown seaweed Cystoseira barbata with different compositions exert biostimulant effects on seedling growth of wheat. PHYSIOLOGIA PLANTARUM 2024; 176:e14503. [PMID: 39191702 DOI: 10.1111/ppl.14503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2024] [Revised: 07/10/2024] [Accepted: 08/01/2024] [Indexed: 08/29/2024]
Abstract
Worldwide, where the demand for novel and greener solutions for sustainable agricultural production is increasing, the use of eco-friendly products such as seaweed-derived biostimulants as pre-sowing treatment represent a promising and important approach for the future. Cystoseira barbata, a brown seaweed species abundant in the Mediterranean Region, was collected from the Marmara Sea and subjected to water, alkali, and acidic extractions, and the biostimulant activity of these extracts was tested on wheat (Triticum durum cv. Saricanak-98) using different rates through application to the seeds or germination medium (substrate) applications. The different extracts were characterized by mineral, total phenolic, free amino acid, mannitol, polysaccharide, antioxidant concentrations and hormone-like activity. The effects of the extracts on growth parameters, root morphology, esterase activity, and mineral nutrient concentrations of wheat seedlings were investigated. Our results suggest that the substrate application was more effective in enhancing the seedling performance compared to the seed treatment. High rates of seaweed extracts applied to substrates increased the shoot length and fresh weight of wheat seedlings by up to 20 and 25%, respectively. The substrate applications enhanced the root fresh weights of wheat seedlings by up to 25% when compared to control plants. Among the biostimulant extract applications, the water extract at the highest rate yielded the most promising results in terms of the measured parameters. Cystoseira barbata extracts with different compositions can be used as effective biostimulants to boost seedling growth. The local seaweed biomass affected by mucilage problems, has great potential as a bioeconomy resource and can contribute to sustainable practices for agriculture.
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Affiliation(s)
- Hande Mutlu-Durak
- Institute of Biotechnology, Gebze Technical University, Gebze, Kocaeli, Turkiye
| | - Yagmur Arikan-Algul
- Institute of Biotechnology, Gebze Technical University, Gebze, Kocaeli, Turkiye
- Gubretas R&D Center, Kocaeli, Turkiye
| | - Engin Bayram
- Institute of Environmental Sciences, Bogazici University, Besiktas, Istanbul, Turkiye
| | - Berat Z Haznedaroglu
- Institute of Environmental Sciences, Bogazici University, Besiktas, Istanbul, Turkiye
| | - Umit Baris Kutman
- Institute of Biotechnology, Gebze Technical University, Gebze, Kocaeli, Turkiye
| | - Bahar Yildiz Kutman
- Institute of Biotechnology, Gebze Technical University, Gebze, Kocaeli, Turkiye
- Original Bio-Economy Resources Center of Excellence (OBEK), Gebze, Kocaeli, Turkiye
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Groli EL, Frascaroli E, Maccaferri M, Ammar K, Tuberosa R. Dissecting the effect of heat stress on durum wheat under field conditions. FRONTIERS IN PLANT SCIENCE 2024; 15:1393349. [PMID: 39006958 PMCID: PMC11239346 DOI: 10.3389/fpls.2024.1393349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 05/30/2024] [Indexed: 07/16/2024]
Abstract
Introduction Heat stress negatively affects wheat production in several ways, mainly by reducing growth rate, photosynthetic capacity and reducing spike fertility. Modeling stress response means analyzing simultaneous relationships among traits affecting the whole plant response and determinants of grain yield. The aim of this study was to dissect the diverse impacts of heat stress on key yield traits and to identify the most promising sources of alleles for heat tolerance. Methods We evaluated a diverse durum wheat panel of 183 cultivars and breeding lines from worldwide, for their response to long-term heat stress under field conditions (HS) with respect to non stress conditions (NS), considering phenological traits, grain yield (GY) and its components as a function of the timing of heat stress and climatic covariates. We investigated the relationships among plant and environmental variables by means of a structural equation model (SEM) and Genetic SEM (GSEM). Results Over two years of experiments at CENEB, CIMMYT, the effects of HS were particularly pronounced for the normalized difference vegetation index, NDVI (-51.3%), kernel weight per spike, KWS (-40.5%), grain filling period, GFP (-38.7%), and GY (-56.6%). Average temperatures around anthesis were negatively correlated with GY, thousand kernel weight TKW and test weight TWT, but also with spike density, a trait determined before heading/anthesis. Under HS, the correlation between the three major determinants of GY, i.e., fertile spike density, spike fertility and kernel size, were of noticeable magnitude. NDVI measured at medium milk-soft dough stage under HS was correlated with both spike fertility and grain weight while under NS it was less predictive of grain weight but still highly correlated with spike fertility. GSEM modeling suggested that the causal model of performance under HS directly involves genetic effects on GY, NDVI, KWS and HD. Discussion We identified consistently suitable sources of genetic resistance to heat stress to be used in different durum wheat pre-breeding programs. Among those, Desert Durums and CIMMYT'80 germplasm showed the highest degree of adaptation and capacity to yield under high temperatures and can be considered as a valuable source of alleles for adaptation to breed new HS resilient cultivars.
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Affiliation(s)
- Eder Licieri Groli
- Department of Agricultural and Food Sciences, DISTAL, University of Bologna, Bologna, Italy
| | - Elisabetta Frascaroli
- Department of Agricultural and Food Sciences, DISTAL, University of Bologna, Bologna, Italy
| | - Marco Maccaferri
- Department of Agricultural and Food Sciences, DISTAL, University of Bologna, Bologna, Italy
| | - Karim Ammar
- International Maize and Wheat Improvement Center, CIMMYT, El Batán, Mexico
| | - Roberto Tuberosa
- Department of Agricultural and Food Sciences, DISTAL, University of Bologna, Bologna, Italy
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