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Liu X, Heinzle J, Tian Y, Salas E, Kwatcho Kengdo S, Borken W, Schindlbacher A, Wanek W. Long-term soil warming changes the profile of primary metabolites in fine roots of Norway spruce in a temperate montane forest. PLANT, CELL & ENVIRONMENT 2024. [PMID: 38935880 DOI: 10.1111/pce.15019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 06/03/2024] [Accepted: 06/14/2024] [Indexed: 06/29/2024]
Abstract
Climate warming poses major threats to temperate forests, but the response of tree root metabolism has largely remained unclear. We examined the impact of long-term soil warming (>14 years, +4°C) on the fine root metabolome across three seasons for 2 years in an old spruce forest, using a liquid chromatography-mass spectrometry platform for primary metabolite analysis. A total of 44 primary metabolites were identified in roots (19 amino acids, 12 organic acids and 13 sugars). Warming increased the concentration of total amino acids and of total sugars by 15% and 21%, respectively, but not organic acids. We found that soil warming and sampling date, along with their interaction, directly influenced the primary metabolite profiles. Specifically, in warming plots, concentrations of arginine, glycine, lysine, threonine, tryptophan, mannose, ribose, fructose, glucose and oxaloacetic acid increased by 51.4%, 19.9%, 21.5%, 19.3%, 22.1%, 23.0%, 38.0%, 40.7%, 19.8% and 16.7%, respectively. Rather than being driven by single compounds, changes in metabolite profiles reflected a general up- or downregulation of most metabolic pathway network. This emphasises the importance of metabolomics approaches in investigating root metabolic pathways and understanding the effects of climate change on tree root metabolism.
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Affiliation(s)
- Xiaofei Liu
- Department of Microbiology and Ecosystem Science, Center of Microbiology and Environmental Systems Science, Division of Terrestrial Ecosystem Research, University of Vienna, Vienna, Austria
- Doctoral School in Microbiology and Environmental Science, University of Vienna, Vienna, Austria
- Key Laboratory of Humid Subtropical Eco-Geographical Process of Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou, China
| | - Jakob Heinzle
- Department of Forest Ecology and Soils, Federal Research and Training Centre for Forests, Natural Hazards and Landscape-BFW, Vienna, Austria
| | - Ye Tian
- Department of Microbiology and Ecosystem Science, Center of Microbiology and Environmental Systems Science, Division of Terrestrial Ecosystem Research, University of Vienna, Vienna, Austria
| | - Erika Salas
- Department of Microbiology and Ecosystem Science, Center of Microbiology and Environmental Systems Science, Division of Terrestrial Ecosystem Research, University of Vienna, Vienna, Austria
| | - Steve Kwatcho Kengdo
- Department of Soil Ecology, Bayreuth Center of Ecology and Environmental Research (Bayceer), University of Bayreuth, Bayreuth, Germany
| | - Werner Borken
- Department of Soil Ecology, Bayreuth Center of Ecology and Environmental Research (Bayceer), University of Bayreuth, Bayreuth, Germany
| | - Andreas Schindlbacher
- Department of Forest Ecology and Soils, Federal Research and Training Centre for Forests, Natural Hazards and Landscape-BFW, Vienna, Austria
| | - Wolfgang Wanek
- Department of Microbiology and Ecosystem Science, Center of Microbiology and Environmental Systems Science, Division of Terrestrial Ecosystem Research, University of Vienna, Vienna, Austria
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Tariq A, Sardans J, Zeng F, Graciano C, Hughes AC, Farré-Armengol G, Peñuelas J. Impact of aridity rise and arid lands expansion on carbon-storing capacity, biodiversity loss, and ecosystem services. GLOBAL CHANGE BIOLOGY 2024; 30:e17292. [PMID: 38634556 DOI: 10.1111/gcb.17292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 04/04/2024] [Indexed: 04/19/2024]
Abstract
Drylands, comprising semi-arid, arid, and hyperarid regions, cover approximately 41% of the Earth's land surface and have expanded considerably in recent decades. Even under more optimistic scenarios, such as limiting global temperature rise to 1.5°C by 2100, semi-arid lands may increase by up to 38%. This study provides an overview of the state-of-the-art regarding changing aridity in arid regions, with a specific focus on its effects on the accumulation and availability of carbon (C), nitrogen (N), and phosphorus (P) in plant-soil systems. Additionally, we summarized the impacts of rising aridity on biodiversity, service provisioning, and feedback effects on climate change across scales. The expansion of arid ecosystems is linked to a decline in C and nutrient stocks, plant community biomass and diversity, thereby diminishing the capacity for recovery and maintaining adequate water-use efficiency by plants and microbes. Prolonged drought led to a -3.3% reduction in soil organic carbon (SOC) content (based on 148 drought-manipulation studies), a -8.7% decrease in plant litter input, a -13.0% decline in absolute litter decomposition, and a -5.7% decrease in litter decomposition rate. Moreover, a substantial positive feedback loop with global warming exists, primarily due to increased albedo. The loss of critical ecosystem services, including food production capacity and water resources, poses a severe challenge to the inhabitants of these regions. Increased aridity reduces SOC, nutrient, and water content. Aridity expansion and intensification exacerbate socio-economic disparities between economically rich and least developed countries, with significant opportunities for improvement through substantial investments in infrastructure and technology. By 2100, half the world's landmass may become dryland, characterized by severe conditions marked by limited C, N, and P resources, water scarcity, and substantial loss of native species biodiversity. These conditions pose formidable challenges for maintaining essential services, impacting human well-being and raising complex global and regional socio-political challenges.
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Affiliation(s)
- Akash Tariq
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, China
- University of Chinese Academy of Sciences, Beijing, China
- Global Ecology Unit, CREAF-CSIC-UAB, CSIC, Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
| | - Jordi Sardans
- Global Ecology Unit, CREAF-CSIC-UAB, CSIC, Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
| | - Fanjiang Zeng
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Corina Graciano
- Instituto de Fisiología Vegetal, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de La Plata, Buenos Aires, Argentina
| | - Alice C Hughes
- School of Biological Sciences, University of Hong Kong, Hong Kong, China
| | - Gerard Farré-Armengol
- Global Ecology Unit, CREAF-CSIC-UAB, CSIC, Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
| | - Josep Peñuelas
- Global Ecology Unit, CREAF-CSIC-UAB, CSIC, Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
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Zhang Y, Song Z, Zhao H, Chen H, Zhao B. Integrative physiological, transcriptomic and metabolomic analysis reveals how the roots of two ornamental Hydrangea macrophylla cultivars cope with lead (Pb) toxicity. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 910:168615. [PMID: 37984650 DOI: 10.1016/j.scitotenv.2023.168615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2023] [Revised: 11/12/2023] [Accepted: 11/14/2023] [Indexed: 11/22/2023]
Abstract
Lead (Pb) soil contamination has caused serious ecological and environmental issues. Hydrangea macrophylla is a potential Pb-contaminated soil remediation plant, however, their Pb stress defense mechanism is largely unknown. Here, the physiology, transcriptomic and metabolome of two H. macrophylla cultivars (ML, Pb-sensitive cultivar; JC, Pb-resistant cultivar) under Pb stress were investigated. The results demonstrated that JC performed superiorly, with activities of the antioxidant enzymes superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) were 1.25, 2.84, and 1.67 times higher than those of ML after Pb treatment, respectively, and the amount of soluble sugar in JC increased by 231.34 % compared with that in ML. The electrical conductivity (EC) value of the root exudates of JC was 43.71 % lower than that of ML under Pb stress. The non-targeted metabolomics analysis revealed 193 metabolites grouped into nine categories. Pb stress-induced differential expression of the 37 metabolites, among which the major metabolites up-regulated in ML were organic acids, while in JC, these were carbohydrates, fatty acids, organic acids and lipids. The transcriptomic analysis revealed that Pb exposure induced 1075 and 1314 differentially expressed genes (DEGs) in JC and ML, respectively. According to the functional annotation results, hub genes were primarily enriched in carbohydrate metabolism, root growth, and plant resistance to external stresses. A conjoint analysis of the two omics indicated that the cutin, suberine and wax biosynthesis pathway in JC played an essential role in Pb detoxification. These findings clarify the resistance mechanism of H. macrophylla to Pb stress and open up a new avenue for breeding H. macrophylla Pb-resistant cultivars.
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Affiliation(s)
- Yuyu Zhang
- The College of Landscape Architecture and Arts, Northwest A&F University, Yangling 712100, China
| | - Ziyi Song
- The College of Landscape Architecture and Arts, Northwest A&F University, Yangling 712100, China
| | - Huiqi Zhao
- The College of Landscape Architecture and Arts, Northwest A&F University, Yangling 712100, China
| | - Huan Chen
- The College of Landscape Architecture and Arts, Northwest A&F University, Yangling 712100, China
| | - Bing Zhao
- The College of Landscape Architecture and Arts, Northwest A&F University, Yangling 712100, China.
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Alharbi K, Khan AA, Sakit Alhaithloul HA, Al-Harbi NA, Al-Qahtani SM, Aloufi SS, Abdulmajeed AM, Muneer MA, Alghanem SMS, Zia-Ur-Rehman M, Usman M, Soliman MH. Synergistic effect of β-sitosterol and biochar application for improving plant growth of Thymus vulgaris under heat stress. CHEMOSPHERE 2023; 340:139832. [PMID: 37591372 DOI: 10.1016/j.chemosphere.2023.139832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Revised: 08/04/2023] [Accepted: 08/14/2023] [Indexed: 08/19/2023]
Abstract
Climate change has become the global concern due to its drastic effects on the environment. Agriculture sector is the backbone of food security which remains at the disposal of climate change. Heat stress is the is the most concerning effect of climate change which negatively affect the plant growth and potential yields. The present experiment was conducted to assess the effects of exogenously applied β-sitosterol (Bs at 100 mg/L) and eucalyptus biochar (Eb at 5%) on the antioxidants and nutritional status in Thymus vulgaris under heat stressed conditions. The pot experiment was conducted in completely randomize design in which thymus plants were exposed to heat stress (33 °C) and as a result, plants showed a substantial decline in morpho-physiological and biochemical parameters e.g., a reduction of 59.46, 75.51, 100.00, 34.61, 22.65, and 38.65% was found in plant height, shoot fresh weight, root fresh weight, dry shoot weight, dry root weight and leaf area while in Bs + Eb + heat stress showed 21.16, 56.81, 67.63, 23.09, 12.84, and 35.89% respectively as compared to control. In the same way photosynthetic pigments, transpiration rate, plant nutritional values and water potential increased in plants when treated with Bs and Eb in synergy. Application of Bs and Eb significantly decreased the electrolytic leakage of cells in heat stressed thymus plants. The production of reactive oxygen species was significantly decreased while the synthesis of antioxidants increased with the application of Bs and Eb. Moreover, the application Bs and Eb increased the concentration of minerals nutrients in the plant body under heat stress. Our results suggested that application of Bs along with Eb decreased the effect of heat stress by maintaining nutrient supply and enhanced tolerance by increasing the production of photosynthetic pigments and antioxidant activity.
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Affiliation(s)
- Khadiga Alharbi
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh, 11671, Saudi Arabia
| | - Amir Abdullah Khan
- Department of Plant Biology and Ecology, Nankai University, Tianjin, 300071, China
| | | | - Nadi Awad Al-Harbi
- Biology Department, University College of Tayma, University of Tabuk, Tabuk, 47512, Saudi Arabia
| | - Salem Mesfir Al-Qahtani
- Biology Department, University College of Tayma, University of Tabuk, Tabuk, 47512, Saudi Arabia
| | - Saeedah Sallum Aloufi
- Biology Department, Faculty of Science, Taibah University, Al-Sharm, Yanbu El-Bahr, Yanbu, 46429, Saudi Arabia
| | - Awatif M Abdulmajeed
- Biology Department, Faculty of Science, University of Tabuk, Umluj, 46429, Tabuk, Saudi Arabia
| | - Muhammad Atif Muneer
- College of Resources and Environment, International Magnesium Institute, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | | | - Muhammad Zia-Ur-Rehman
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, 38000, Punjab, Pakistan.
| | - Muhammad Usman
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, 38000, Punjab, Pakistan
| | - Mona H Soliman
- Biology Department, Faculty of Science, Taibah University, Al-Sharm, Yanbu El-Bahr, Yanbu, 46429, Saudi Arabia; Botany and Microbiology Department, Faculty of Science, Cairo University, Giza, 12613, Egypt.
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5
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Singh R. Spectral reflectance and fluorescence is a rapid, non-destructive tool for drought tolerance monitoring in Withania somnifera (L.) Dunal. PROTOPLASMA 2023; 260:1421-1435. [PMID: 37119439 DOI: 10.1007/s00709-023-01859-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2023] [Accepted: 04/15/2023] [Indexed: 06/19/2023]
Abstract
Withania somnifera plants were exposed to drought stress for 23 days. Relative water content (RWC), gaseous exchange, fluorescence parameters, and spectral reflectance changes were monitored under drought stress. Assimilation rate and RWC decreased by 81% and 65%, respectively, during drought exposure of 23 days. Photosynthetic reflectance index (PRI) and water index (WI) showed a decreasing pattern under drought stress and correlated with Amax and RWC. Anthocyanin reflectance index and anthocyanin content increased with drought stress. Similarly, rational among R727, R696, R770, and R731 reflects chlorophyll content and Chl a/b ratio and copes with actual chlorophyll content. Fluorescence changes showed the opening and closing of PSII reaction centers, while absorbance change at 830/875 nm showed activity and energy balance of PSI. Non-photochemical quenching increased under drought, which showed depoxydation of xanthine cycle pigment. Energy balance at the acceptor and donor side of PSI adjusted under drought stress by increasing electron carrying limitation at donor side. Energy balance between PSI and PSII is maintained by increasing cyclic electron flux under mild drought stress. Both protective mechanism depoxydation of xanthine cycle pigment and enhancement of cyclic electron flux reduced or diminished under severe drought stress. Decrease in leaf area and stomatal closure may cause a reduction in transpiration that results into loss of RWC and altered physiological processes. Since fluorescence, absorbance change and spectral reflectance are non-invasive measurements that may be used as indicators for assessing drought tolerance in medicinal plants.
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Affiliation(s)
- Ruchi Singh
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, India, 226015.
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Zhang S, He C, Wei L, Jian S, Liu N. Transcriptome and metabolome analysis reveals key genes and secondary metabolites of Casuarina equisetifolia ssp. incana in response to drought stress. BMC PLANT BIOLOGY 2023; 23:200. [PMID: 37069496 PMCID: PMC10111710 DOI: 10.1186/s12870-023-04206-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Accepted: 03/30/2023] [Indexed: 06/19/2023]
Abstract
Casuarina equisetifolia is drought tolerant, salt tolerant, and able to grow in barren environments. It is often used to reduce wind damage, to prevent sand erosion, and to help establish plant communities in tropical and subtropical coastal zones. To determine the basis for its drought tolerance, we conducted transcriptomic and metabolic analyses of young branchlets under a non-drought treatment (D_0h) and 2-, 12-, and 24-h-long drought treatments (D_2h, D_12h, and D_24h). A total of 5033 and 8159 differentially expressed genes (DEGs) were identified in D_2h/D_0h and D_24h/D_0h. These DEGs were involved in plant hormone signal transduction, jasmonic acid (JA) biosynthesis, flavonoid biosynthesis, and phenylpropanoid biosynthesis. A total of 148 and 168 differentially accumulated metabolites (DAMs) were identified in D_12h/D_0h and D_24h/D_0h, which were mainly amino acids, phenolic acids, and flavonoids. In conclusion, C. equisetifolia responds to drought by regulating plant hormone signal transduction and the biosynthesis of JA, flavonoid, and phenylpropanoid. These results increase the understanding of drought tolerance in C. equisetifolia at both transcriptional and metabolic levels and provide new insights into coastal vegetation reconstruction and management.
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Affiliation(s)
- Shike Zhang
- CAS Engineering Laboratory for Vegetation Ecosystem Restoration on Islands and Coastal Zones, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- College of Life Sciences, Gannan Normal University, Ganzhou, 341000, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Chunmei He
- CAS Engineering Laboratory for Vegetation Ecosystem Restoration on Islands and Coastal Zones, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Long Wei
- Guangdong Provincial Key Laboratory of Silviculture, Protection and Utilization, Guangdong Academy of Forestry, Guangzhou, 510520, China
| | - Shuguang Jian
- CAS Engineering Laboratory for Vegetation Ecosystem Restoration on Islands and Coastal Zones, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
| | - Nan Liu
- CAS Engineering Laboratory for Vegetation Ecosystem Restoration on Islands and Coastal Zones, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
- College of Life Sciences, Gannan Normal University, Ganzhou, 341000, China.
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Sytiuk A, Hamard S, Céréghino R, Dorrepaal E, Geissel H, Küttim M, Lamentowicz M, Tuittila ES, Jassey VEJ. Linkages between Sphagnum metabolites and peatland CO 2 uptake are sensitive to seasonality in warming trends. THE NEW PHYTOLOGIST 2023; 237:1164-1178. [PMID: 36336780 PMCID: PMC10108112 DOI: 10.1111/nph.18601] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 10/31/2022] [Indexed: 06/16/2023]
Abstract
Plants produce a wide diversity of metabolites. Yet, our understanding of how shifts in plant metabolites as a response to climate change feedback on ecosystem processes remains scarce. Here, we test to what extent climate warming shifts the seasonality of metabolites produced by Sphagnum mosses, and what are the consequences of these shifts for peatland C uptake. We used a reciprocal transplant experiment along a climate gradient in Europe to simulate climate change. We evaluated the responses of primary and secondary metabolites in five Sphagnum species and related their responses to gross ecosystem productivity (GEP). When transplanted to a warmer climate, Sphagnum species showed consistent responses to warming, with an upregulation of either their primary or secondary metabolite according to seasons. Moreover, these shifts were correlated to changes in GEP, especially in spring and autumn. Our results indicate that the Sphagnum metabolome is very plastic and sensitive to warming. We also show that warming-induced changes in the seasonality of Sphagnum metabolites have consequences on peatland GEP. Our findings demonstrate the capacity for plant metabolic plasticity to impact ecosystem C processes and reveal a further mechanism through which Sphagnum could shape peatland responses to climate change.
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Affiliation(s)
- Anna Sytiuk
- Laboratoire Ecologie Fonctionnelle et Environnement (LEFE)Université Paul Sabatier, CNRSF‐31000ToulouseFrance
| | - Samuel Hamard
- Laboratoire Ecologie Fonctionnelle et Environnement (LEFE)Université Paul Sabatier, CNRSF‐31000ToulouseFrance
| | - Régis Céréghino
- Laboratoire Ecologie Fonctionnelle et Environnement (LEFE)Université Paul Sabatier, CNRSF‐31000ToulouseFrance
| | - Ellen Dorrepaal
- Department of Ecology and Environmental Science, Climate Impacts Research CentreUmeå UniversitySE‐981 07AbiskoSweden
| | - Honorine Geissel
- Laboratoire Ecologie Fonctionnelle et Environnement (LEFE)Université Paul Sabatier, CNRSF‐31000ToulouseFrance
| | - Martin Küttim
- Institute of Ecology, School of Natural Sciences and HealthTallinn UniversityUus‐Sadama 510120TallinnEstonia
| | - Mariusz Lamentowicz
- Climate Change Ecology Research Unit, Faculty of Geographical and Geological SciencesAdam Mickiewicz University in PoznańBogumiła Krygowskiego 1061‐680PoznańPoland
| | - Eeva Stiina Tuittila
- School of Forest SciencesUniversity of Eastern FinlandJoensuu CampusFI‐80100JoensuuFinland
| | - Vincent E. J. Jassey
- Laboratoire Ecologie Fonctionnelle et Environnement (LEFE)Université Paul Sabatier, CNRSF‐31000ToulouseFrance
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Jiang P, Han X, Liu Z, Fan S, Zhang X. C:N:P stoichiometric variations of herbs and its relationships with soil properties and species relative abundance along the Xiaokai River irrigation in the Yellow River Delta, China. FRONTIERS IN PLANT SCIENCE 2023; 14:1130477. [PMID: 36794217 PMCID: PMC9923178 DOI: 10.3389/fpls.2023.1130477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Accepted: 01/16/2023] [Indexed: 06/18/2023]
Abstract
INTRODUCTION Soil salinity is known to affect plant performance and nutrient stoichiometry by altering their ecophysiology, and thus playing a crucial role in determining plant distribution patterns and nutrient cycles in salinized ecosystems. However, there was little consensus on the effects of salinity stress on plant C, N, and P stoichiometries. Moreover, determining the relationships between species relative species abundance and plant C, N, and P stoichiometries can help to understand the different adaptive strategies between the common and rare species as well as the community assembly process. METHODS We determined the plant C, N, P stoichiometries at the community and species levels and the relative abundance of species as well as the corresponding soil properties from five sampling sites along a soil salinity gradient in the Yellow River Delta, China. RESULTS AND DISCUSSION We found that the C concentration of belowground part increased with soil salinity. Meanwhile, plant community N concentration and C:N ratio tended to decrease with soil salinity, whereas the P concentration, C:P, and N:P ratios exhibited the opposite trends. This indicated that N use efficiency increased, while P use efficiency decreased with soil salinity. Moreover, the decreased N:P ratio indicated that N limitation was gradually aggravated along the soil salinity gradient. The soil C:P ratio and P concentration were the major factors of plant C, N, and P stoichiometries in the early growth stage, whereas the soil pH and P concentration were the major factors of plant C, N, and P stoichiometries in the late growth stage. Compared with that of the rare species, the C:N:P stoichiometry of the most common species was medium. Moreover, the intraspecific variations in the aboveground part N:P ratio and belowground part C concentration showed a significant correlation with species' relative abundance, which indicated that higher intraspecific trait variation might facilitate greater fitness and survival opportunities in environments with high heterogeneity. CONCLUSION Our results revealed that the plant community C:N:P stoichiometry and its determining soil properties varied with plant tissues as well as sampling seasons, and emphasized the importance of intraspecific variation in determining the functional response of plant communities to salinity stress.
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Affiliation(s)
- Peipei Jiang
- Dongying Key Laboratory of Salt Tolerance Mechanism and Application of Halophytes, Dongying Institute, Shandong Normal University, Dongying, China
- Key Lab of Plant Stress Research, College of Life Sciences, Shandong Normal University, Ji’nan, China
| | - Xiaojun Han
- Binzhou Yellow River Irrigation Management Service Center, Binzhou, China
| | - Ziyu Liu
- School of Industrial Engineering, Purdue University, West Lafayette, IN, United States
| | - Shoujin Fan
- Dongying Key Laboratory of Salt Tolerance Mechanism and Application of Halophytes, Dongying Institute, Shandong Normal University, Dongying, China
- Key Lab of Plant Stress Research, College of Life Sciences, Shandong Normal University, Ji’nan, China
| | - Xuejie Zhang
- Dongying Key Laboratory of Salt Tolerance Mechanism and Application of Halophytes, Dongying Institute, Shandong Normal University, Dongying, China
- Key Lab of Plant Stress Research, College of Life Sciences, Shandong Normal University, Ji’nan, China
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9
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Zhang Y, Cheng X, Sha Z, Lekammudiyanse MU, Ma W, Dayananda B, Li S, Lyu R. Environmental drivers of the leaf nitrogen and phosphorus stoichiometry characteristics of critically endangered Acer catalpifolium. FRONTIERS IN PLANT SCIENCE 2022; 13:1052565. [PMID: 36589138 PMCID: PMC9803173 DOI: 10.3389/fpls.2022.1052565] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/24/2022] [Accepted: 11/25/2022] [Indexed: 06/17/2023]
Abstract
Acer catalpifolium is a perennial deciduous broad-leaved woody plant, listed in the second-class protection program in China mainly distributed on the northwest edge of Chengdu plain. However, extensive anthropogenic disturbances and pollutants emissions (such as SO2, NH3 and NOX) in this area have created a heterogeneous habitat for this species and its impacts have not been systematically studied. In this study, we investigated the leaf nitrogen (N) and phosphorus (P) content of A. catalpifolium in the natural distribution areas, and a series of simulation experiments (e.g., various water and light supply regimes, different acid and N deposition levels, reintroduction management) were conducted to analyze responses of N and P stoichiometric characteristics to environmental changes. The results showed that leaf nitrogen content (LNC) was 14.49 ~ 25.44 mg g-1, leaf phosphorus content (LPC) was 1.29~3.81 mg g-1 and the N/P ratio of the leaf (L-N/P) was 4.87~13.93. As per the simulation experiments, LNC of A. catalpifolium is found to be relatively high at strong light conditions (80% of full light), high N deposition (100 and 150 kg N ha-1), low acidity rainwater, reintroduction to understory area or N fertilizer applications. A high level of LPC was found when applied with 80% of full light and moderate N deposition (100 kg N ha-1). L-N/P was high under severe shade (8% of full light), severe N deposition (200 kg N ha-1), and reintroduction to gap and undergrowth habitat; however, low L-N/P was observed at low acidity rainwater or P fertilizer application. The nutrient supply facilitates corresponding elements uptake, shade tends to induce P limitation and soil acidification shows N limitation. Our results provide theoretical guidance for field management and nutrient supply regimes for future protection, population rejuvenation of this species and provide guidelines for conservation and nutrient management strategies for the endangered species.
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Affiliation(s)
- Yuyang Zhang
- The National-Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology on Characteristic Fruit Trees, College of Horticulture and Forestry Sciences, Tarim University, Alar, China
| | - Xiaoyu Cheng
- The National-Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology on Characteristic Fruit Trees, College of Horticulture and Forestry Sciences, Tarim University, Alar, China
| | - Zhipeng Sha
- Faculty of Morden Agricultural Engineering, Kunming University of Science and Technology, Kunming, China
| | - Manuja U. Lekammudiyanse
- Coastal Marine Ecosystems Research Centre, Central Queensland University, Gladstone, QLD, Australia
| | - Wenbao Ma
- Ecological Restoration and Conservation of Forests and Wetlands Key Laboratory of Sichuan Province, Sichuan Academy of Forestry, Chengdu, China
| | - Buddhi Dayananda
- School of Agriculture and Food Sciences, The University of Queensland, Brisbane QLD, Australia
| | - Shuang Li
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, China
| | - Ruiheng Lyu
- The National-Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology on Characteristic Fruit Trees, College of Horticulture and Forestry Sciences, Tarim University, Alar, China
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10
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Zhou Y, Yang M, Tai Z, Jia J, Luan D, Ma X. Carbohydrates and secondary compounds of alpine tundra shrubs in relation to experimental warming. BMC PLANT BIOLOGY 2022; 22:482. [PMID: 36210454 PMCID: PMC9549620 DOI: 10.1186/s12870-022-03851-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Accepted: 09/21/2022] [Indexed: 06/16/2023]
Abstract
BACKGROUND It is critical to understand the sensitivity, response direction and magnitude of carbohydrates and secondary compounds to warming for predicting the structure and function of the tundra ecosystem towards future climate change. RESULTS Open-top chambers (OTCs) were used to passively increase air and soil temperatures on Changbai Mountain alpine tundra. After seven years' continuous warming (+ 1.5 °C), the vegetation coverage, nonstructural carbohydrates (soluble sugars and starch) and secondary compounds (total phenols, flavonoids and triterpenes) of leaves and roots in three dominant dwarf shrubs, Dryas octopetala var. asiatica, Rhododendron confertissimum and Vaccinium uliginosum, were investigated during the growing season. Warming did not significantly affect the concentrations of carbohydrates but decreased total phenols for the three species. Carbohydrates and secondary compounds showed significantly seasonal pattern and species-specific variation. No significant trade-off or negative relationship between carbohydrates and secondary compounds was observed. Compared to Dr. octopetala var. asiatica, V. uliginosum allocated more carbon on secondary compounds. Warming significantly increased the coverage of Dr. octopetala var. asiatica, did not change it for V. uliginosum and decreased it for Rh. confertissimum. Rh. confertissimum had significantly lower carbohydrates and invested more carbon on secondary compounds than the other two species. CONCLUSIONS Enhanced dominance and competitiveness of Dr. octopetala var. asiatica was companied by increased trend in carbohydrate concentrations and decreased ratio of secondary compounds to total carbon in the warming OTCs. We, therefore, predict that Dr. octopetala var. asiatica will continue to maintain dominant status, but the competition ability of V. uliginosum could gradually decrease with warming, leading to changes in species composition and community structure of the Changbai tundra ecosystem under future climate warming.
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Affiliation(s)
- Yumei Zhou
- Ecological Technique and Engineering School, Shanghai Institute of Technology, Shanghai, 201418, China
| | - Ming Yang
- Ecological Technique and Engineering School, Shanghai Institute of Technology, Shanghai, 201418, China
| | - Zhijuan Tai
- Department of Tourism Economy, Changbai Mountain Academy of Sciences, Baihe, 133633, China
| | - Jingjing Jia
- Ecological Technique and Engineering School, Shanghai Institute of Technology, Shanghai, 201418, China
| | - Dongtao Luan
- Ecological Technique and Engineering School, Shanghai Institute of Technology, Shanghai, 201418, China
| | - Xia Ma
- School of Perfume and Aroma Technology, Shanghai Institute of Technology, Shanghai, 201418, China.
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11
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Min X, Wang Q, Wei Z, Liu Z, Liu W. Full-length transcriptional analysis reveals the complex relationship of leaves and roots in responses to cold-drought combined stress in common vetch. FRONTIERS IN PLANT SCIENCE 2022; 13:976094. [PMID: 36212304 PMCID: PMC9538161 DOI: 10.3389/fpls.2022.976094] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Accepted: 08/25/2022] [Indexed: 05/27/2023]
Abstract
Plant responses to single or combined abiotic stresses between aboveground and underground parts are complex and require crosstalk signaling pathways. In this study, we explored the transcriptome data of common vetch (Vicia sativa L.) subjected to cold and drought stress between leaves and roots via meta-analysis to identify the hub abiotic stress-responsive genes. A total of 4,836 and 3,103 differentially expressed genes (DEGs) were identified in the leaves and roots, respectively. Transcriptome analysis results showed that the set of stress-responsive DEGs to concurrent stress is distinct from single stress, indicating a specialized and unique response to combined stresses in common vetch. Gene Ontology (GO) enrichment analyses identified that "Photosystem II," "Defence response," and "Sucrose synthase/metabolic activity" were the most significantly enriched categories in leaves, roots, and both tissues, respectively. The Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis results indicated that "ABC transporters" are the most enriched pathway and that all of the genes were upregulated in roots. Furthermore, 29 co-induced DEGs were identified as hub genes based on the consensus expression profile module of single and co-occurrence stress analysis. In transgenic yeast, the overexpression of three cross-stress tolerance candidate genes increased yeast tolerance to cold-drought combined stress. The elucidation of the combined stress-responsive network in common vetch to better parse the complex regulation of abiotic responses in plants facilitates more adequate legume forage breeding for combined stress tolerance.
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Affiliation(s)
- Xueyang Min
- State Key Laboratory of Grassland Agro-Ecosystems, Lanzhou University, Engineering Research Centre of Grassland Industry, Ministry of Education, Western China Technology Innovation Centre for Grassland Industry, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, Gansu, China
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China
| | - Qiuxia Wang
- State Key Laboratory of Grassland Agro-Ecosystems, Lanzhou University, Engineering Research Centre of Grassland Industry, Ministry of Education, Western China Technology Innovation Centre for Grassland Industry, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, Gansu, China
| | - Zhenwu Wei
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China
| | - Zhipeng Liu
- State Key Laboratory of Grassland Agro-Ecosystems, Lanzhou University, Engineering Research Centre of Grassland Industry, Ministry of Education, Western China Technology Innovation Centre for Grassland Industry, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, Gansu, China
| | - Wenxian Liu
- State Key Laboratory of Grassland Agro-Ecosystems, Lanzhou University, Engineering Research Centre of Grassland Industry, Ministry of Education, Western China Technology Innovation Centre for Grassland Industry, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, Gansu, China
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12
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Yan C, Liu Z, Yuan Z, Shi X, Lock TR, Kallenbach RL. Aridity modifies the responses of plant stoichiometry to global warming and nitrogen deposition in semi-arid steppes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 831:154807. [PMID: 35341862 DOI: 10.1016/j.scitotenv.2022.154807] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 03/19/2022] [Accepted: 03/20/2022] [Indexed: 06/14/2023]
Abstract
Global warming and nitrogen (N) deposition are known to unbalance the stoichiometry of carbon (C), N, and phosphorus (P) in terrestrial plants, but it is unclear how water availability regulates their effects along a natural aridity gradient. Here, we conducted manipulative experiments to determine the effects of experimental warming (WT) and N addition (NT) on plant stoichiometry in desert, typical, and meadow steppes with decreasing aridity. WT elevated air temperatures by 1.2-2.9 °C using open-top chambers. WT increased forb C:N ratio and thus its N use efficiency and competitiveness in desert steppes, whereas WT reduced forb C:N and C:P ratios in typical and meadow steppes. Plant N:P ratio, which reflects nutrient limitation, was reduced by WT in desert steppes but not for typical or meadow steppes. NT reduced plant C:N ratios and increased N:P ratios in all three steppes. NT reduced forb C:P ratios in desert and typical steppes, but it enhanced grass C:P ratio in meadow steppes, indicating an enhancement of P use efficiency and competitiveness of grasses in wet steppes. WT and NT had synergetic effects on grass C:N and C:P ratios in all three steppes, which helps to increase grasses' productivity. Under WT or NT, the changes in community C:N ratio were positively correlated with increasing aridity, indicating that aridity increases plants' N use efficiency. However, aridity negatively affected the changes in N:P ratios under NT but not WT, which suggests that aridity mitigates P limitation induced by N deposition. Our results imply that warming could shift the dominant functional group into forbs in dry steppes due to altered stoichiometry, whereas grasses become dominated plants in wet steppes under increasing N deposition. We suggest that global changes might break the stoichiometric balance of plants and water availability could strongly modify such processes in semi-arid steppes.
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Affiliation(s)
- Chuang Yan
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, Shaanxi 712100, China; University of Chinese Academy of Sciences, Beijing 100049, China; Institute of Geographical Sciences, Henan Academy of Sciences, Zhengzhou, Henan 450052, China
| | - Zunchi Liu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Zhiyou Yuan
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Northwest A&F University, Yangling, Shaanxi 712100, China.
| | - Xinrong Shi
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - T Ryan Lock
- Division of Plant Sciences and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri, 108 Waters Hall, Columbia, MO 65211, USA
| | - Robert L Kallenbach
- Division of Plant Sciences and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri, 108 Waters Hall, Columbia, MO 65211, USA
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13
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Song JL, Wang ZY, Wang YH, Du J, Wang CY, Zhang XQ, Chen S, Huang XL, Xie XM, Zhong TX. Overexpression of Pennisetum purpureum CCoAOMT Contributes to Lignin Deposition and Drought Tolerance by Promoting the Accumulation of Flavonoids in Transgenic Tobacco. FRONTIERS IN PLANT SCIENCE 2022; 13:884456. [PMID: 35620690 PMCID: PMC9129916 DOI: 10.3389/fpls.2022.884456] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/26/2022] [Accepted: 03/25/2022] [Indexed: 06/15/2023]
Abstract
Elephant grass (Pennisetum purpureum) is a fast-growing and low-nutrient demand plant that is widely used as a forage grass and potential energy crop in tropical and subtropical regions of Asia, Africa, and the United States. Transgenic tobacco with the PpCCoAOMT gene from Pennisetum purpureum produces high lignin content that is associated with drought tolerance in relation to lower accumulation of reactive oxygen species (ROS), along with higher antioxidant enzyme activities and osmotic adjustment. In this study, transgenic tobacco plants revealed no obvious cost to plant growth when expressing the PpCCoAOMT gene. Metabolomic studies demonstrated that tobacco plants tolerant to drought stress accumulated flavonoids under normal and drought conditions, which likely explains the observed tolerance phenotype in wild-type tobacco. Our results suggest that plants overexpressing PpCCoAOMT were better able to cope with water deficit than were wild-type controls; metabolic flux was redirected within primary and specialized metabolism to induce metabolites related to defense to drought stress. These results could help to develop drought-resistant plants for agriculture in the future.
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Affiliation(s)
- Jian-Ling Song
- Office of Academic Research, Xingyi Normal University for Nationalities, Xingyi, China
| | - Ze-Yu Wang
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- Guangdong Engineering Research Center for Grassland Science, Guangzhou, China
| | - Yin-Hua Wang
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- Guangdong Engineering Research Center for Grassland Science, Guangzhou, China
| | - Juan Du
- Institute for Agricultural Biosciences, Oklahoma State University, Ardmore, OK, United States
| | - Chen-Yu Wang
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Xiang-Qian Zhang
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- Guangdong Engineering Research Center for Grassland Science, Guangzhou, China
| | - Shu Chen
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- Guangdong Engineering Research Center for Grassland Science, Guangzhou, China
| | - Xiao-Ling Huang
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Xin-Ming Xie
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- Guangdong Engineering Research Center for Grassland Science, Guangzhou, China
| | - Tian-Xiu Zhong
- Department of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- Guangdong Engineering Research Center for Grassland Science, Guangzhou, China
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14
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Fernández de Simón B, Cadahía E, Aranda I. Aerial and underground organs display specific metabolic strategies to cope with water stress under rising atmospheric CO 2 in Fagus sylvatica L. PHYSIOLOGIA PLANTARUM 2022; 174:e13711. [PMID: 35570621 PMCID: PMC9321914 DOI: 10.1111/ppl.13711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Accepted: 04/26/2022] [Indexed: 06/15/2023]
Abstract
Beech is known to be a moderately drought-sensitive tree species, and future increases in atmospheric concentrations of CO2 ([CO2 ]) could influence its ecological interactions, also with changes at the metabolic level. The metabolome of leaves and roots of drought-stressed beech seedlings grown under two different [CO2 ] (400 (aCO2 ) and 800 (eCO2 ) ppm) was analyzed together with gas exchange parameters and water status. Water stress estimated from predawn leaf water potential (Ψpd ) was similar under both [CO2 ], although eCO2 had a positive impact on net photosynthesis and intrinsic water use efficiency. The aerial and underground organs showed different metabolomes. Leaves mainly stored C metabolites, while those of N and P accumulated differentially in roots. Drought triggered the proline and N-rich amino acids biosynthesis in roots through the activation of arginine and proline pathways. Besides the TCA cycle, polyols and soluble sugar biosynthesis were activated in roots, with no clear pattern seen in the leaves, prioritizing the root functioning as metabolites sink. eCO2 slightly altered this metabolic acclimation to drought, reflecting mitigation of its effect. The leaves showed only minor changes, investing C surplus in secondary metabolites and malic acid. The TCA cycle metabolites and osmotically active substances increased in roots, but many other metabolites decreased as if the water stress was dampened. Above- and belowground plant metabolomes were differentially affected by two drivers of climate change, water scarcity and high [CO2 ], showing different chemical responsiveness that could modulate the tree adaptation to future climatic scenarios.
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Affiliation(s)
- Brígida Fernández de Simón
- Grupo de Ecología Funcional de Especies ForestalesCentro de Investigacion Forestal (CIFOR‐INIA) CSICMadridSpain
| | - Estrella Cadahía
- Grupo de Ecología Funcional de Especies ForestalesCentro de Investigacion Forestal (CIFOR‐INIA) CSICMadridSpain
| | - Ismael Aranda
- Grupo de Ecología Funcional de Especies ForestalesCentro de Investigacion Forestal (CIFOR‐INIA) CSICMadridSpain
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15
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Amplified Drought and Seasonal Cycle Modulate Quercus pubescens Leaf Metabolome. Metabolites 2022; 12:metabo12040307. [PMID: 35448494 PMCID: PMC9026387 DOI: 10.3390/metabo12040307] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 03/21/2022] [Accepted: 03/23/2022] [Indexed: 02/04/2023] Open
Abstract
The intensification of summer drought expected with climate change can induce metabolism modifications in plants to face such constraints. In this experiment, we used both a targeted approach focused on flavonoids, as well as an untargeted approach, to study a broader fraction of the leaf metabolome of Quercus pubescens exposed to amplified drought. A forest site equipped with a rainfall exclusion device allowed reduction of natural rainfall by ~30% over the tree canopy. Leaves of natural drought (ND) and amplified drought (AD) plots were collected over three seasonal cycles (spring, summer, and autumn) in 2013 (the second year of rain exclusion), 2014, and 2015. As expected, Q. pubescens metabolome followed a seasonal course. In the summer of 2015, the leaf metabolome presented a shifted and early autumnal pattern because of harsher conditions during this year. Despite low metabolic modification at the global scale, our results demonstrated that 75% of Quercus metabolites were upregulated in springs when trees were exposed to AD, whereas 60 to 73% of metabolites (93% in summer 2015), such as kaempferols and quercetins, were downregulated in summers/autumns. Juglanin, a kaempferol pentoside, as well as rhododendrin derivatives, were upregulated throughout the year, suggesting an antioxidant ability of these metabolites. Those changes in terms of phenology and leaf chemistry could, in the end, affect the ecosystem functioning.
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16
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Xu X, Qiu Y, Zhang K, Yang F, Chen M, Luo X, Yan X, Wang P, Zhang Y, Chen H, Guo H, Jiang L, Hu S. Climate warming promotes deterministic assembly of arbuscular mycorrhizal fungal communities. GLOBAL CHANGE BIOLOGY 2022; 28:1147-1161. [PMID: 34668627 DOI: 10.1111/gcb.15945] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 09/20/2021] [Indexed: 06/13/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) significantly contribute to plant resource acquisition and play important roles in mediating plant interactions and soil carbon (C) dynamics. However, it remains unclear how AMF communities respond to climate change. We assessed impacts of warming and precipitation alterations (30% increase or decrease) on soil AMF communities, and examined major ecological processes shaping the AMF community assemblage in a Tibetan alpine meadow. Our results showed that warming significantly increased root biomass, and available nitrogen (N) and phosphorus (P) in soil. While precipitation alterations increased AMF abundances, they did not significantly affect the composition or diversity of AMF communities. In contrast, warming altered the composition of AMF communities and reduced their Shannon-Wiener index and Pielou's evenness. In particular, warming shifted the AMF community composition in favor of Diversisporaceae over Glomeraceae, likely through its impact on soil N and P availability. In addition, AMF communities were phylogenetically random in the unwarmed control but clustered in warming plots, implying more deterministic community assembly under climate warming. Warming enhancement of root growth, N and P availability likely reduced plant C-allocation to AMF, imposing stronger environmental filtering on AMF communities. We further proposed a conceptual framework that integrates biological and geochemical processes into a mechanistic understanding of warming and precipitation changes' effects on AMF. Taken together, these results suggest that soil AMF communities may be more sensitive to warming than expected, highlighting the need to monitor their community structure and associated functional consequences on plant communities and soil C dynamics under the future warmer climate.
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Affiliation(s)
- Xinyu Xu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Yunpeng Qiu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Kangcheng Zhang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Fei Yang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Mengfei Chen
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Xi Luo
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Xuebin Yan
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Peng Wang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Yi Zhang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Huaihai Chen
- School of Ecology, Sun Yat-sen University, Guangzhou, China
| | - Hui Guo
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Lin Jiang
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
| | - Shuijin Hu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
- Department of Entomology & Plant Pathology, North Carolina State University, Raleigh, North Carolina, USA
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17
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Li SJ, Liu SC, Lin XH, Grierson D, Yin XR, Chen KS. Citrus heat shock transcription factor CitHsfA7-mediated citric acid degradation in response to heat stress. PLANT, CELL & ENVIRONMENT 2022; 45:95-104. [PMID: 34705284 DOI: 10.1111/pce.14207] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 10/14/2021] [Accepted: 10/16/2021] [Indexed: 06/13/2023]
Abstract
Heat stress is a major abiotic stress for plants, which can generate a range of biochemical and genetic responses. In 'Ponkan' mandarin fruit, hot air treatment (HAT) accelerates the degradation of citric acid. However, the transcriptional regulatory mechanisms of citrate degradation in response to HAT remain to be elucidated. Here, 17 heat shock transcription factor sequences were isolated, and dual-luciferase assays were employed to investigate whether the encoded proteins that could trans-activate the promoters of key genes in the GABA shunt, involved in citrate metabolism. We identified four heat shock transcription factors (CitHsfA7, CitHsfA3, CitHsfA4b and CitHsfA8) that showed trans-activation effects on CitAco3, CitIDH3 and CitGAD4, respectively. Transient expression of the CitHsfs in citrus fruits indicated that CitHsfA7 was the only factor that resulted in a significant lowering of the citric acid content, and these results were confirmed by a virus-induced gene silencing system (VIGS). Sub-cellar localization showed that CitHsfA7 is located in the nucleus and is capable of binding directly to a putative HSE in the CitAco3 promoter and enhance its expression. We proposed that the induction of CitHsfA7 transcript level contributes to citric acid degradation in citrus fruit, via modulation of CitAco3 in response to HAT.
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Affiliation(s)
- Shao-Jia Li
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, China
- The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou, China
| | - Sheng-Chao Liu
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, China
| | - Xia-Hui Lin
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, China
| | - Donald Grierson
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, China
- Plant & Crop Sciences Division, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, UK
| | - Xue-Ren Yin
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, China
- The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou, China
| | - Kun-Song Chen
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, China
- The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou, China
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18
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Lázaro-González A, Gargallo-Garriga A, Hódar JA, Sardans J, Oravec M, Urban O, Peñuelas J, Zamora R. Implications of mistletoe parasitism for the host metabolome: A new plant identity in the forest canopy. PLANT, CELL & ENVIRONMENT 2021; 44:3655-3666. [PMID: 34486744 DOI: 10.1111/pce.14179] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Revised: 08/25/2021] [Accepted: 08/26/2021] [Indexed: 06/13/2023]
Abstract
Mistletoe-host systems exemplify an intimate and chronic relationship where mistletoes represent protracted stress for hosts, causing long-lasting impact. Although host changes in morphological and reproductive traits due to parasitism are well known, shifts in their physiological system, altering metabolite concentrations, are less known due to the difficulty of quantification. Here, we use ecometabolomic techniques in the plant-plant interaction, comparing the complete metabolome of the leaves from mistletoe (Viscum album) and needles from their host (Pinus nigra), both parasitized and unparasitized, to elucidate host responses to plant parasitism. Our results show that mistletoe acquires metabolites basically from the primary metabolism of its host and synthesizes its own defence compounds. In response to mistletoe parasitism, pines modify a quarter of their metabolome over the year, making the pine canopy metabolome more homogeneous by reducing the seasonal shifts in top-down stratification. Overall, host pines increase antioxidant metabolites, suggesting oxidative stress, and also increase part of the metabolites required by mistletoe, which act as a permanent sink of host resources. In conclusion, by exerting biotic stress and thereby causing permanent systemic change, mistletoe parasitism generates a new host-plant metabolic identity available in forest canopy, which could have notable ecological consequences in the forest ecosystem.
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Affiliation(s)
- Alba Lázaro-González
- Department of Ecology, Terrestrial Ecology Research Group, University of Granada, Granada, Spain
| | - Albert Gargallo-Garriga
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Spain
- CREAF, Cerdanyola del Vallès, Spain
- Global Change Research Institute, Academy of Sciences of the Czech Republic, Brno, Czech Republic
| | - José Antonio Hódar
- Department of Ecology, Terrestrial Ecology Research Group, University of Granada, Granada, Spain
| | - Jordi Sardans
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Spain
- CREAF, Cerdanyola del Vallès, Spain
| | - Michal Oravec
- Global Change Research Institute, Academy of Sciences of the Czech Republic, Brno, Czech Republic
| | - Otmar Urban
- Global Change Research Institute, Academy of Sciences of the Czech Republic, Brno, Czech Republic
| | - Josep Peñuelas
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Spain
- CREAF, Cerdanyola del Vallès, Spain
| | - Regino Zamora
- Department of Ecology, Terrestrial Ecology Research Group, University of Granada, Granada, Spain
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19
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Zhang Q, Luo D, Yang L, Xie J, Yang Z, Zhou J, Li X, Xiong D, Chen Y, Yang Y. Variations in Rainfall Affect the Responses of Foliar Chemical Properties of Cunninghamia lanceolata Seedlings to Soil Warming. FRONTIERS IN PLANT SCIENCE 2021; 12:705861. [PMID: 34394162 PMCID: PMC8363246 DOI: 10.3389/fpls.2021.705861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Accepted: 07/01/2021] [Indexed: 06/13/2023]
Abstract
Climate warming is becoming an increasingly serious threat. Understanding plant stoichiometry changes under climate warming is crucial for predicting the effects of future warming on terrestrial ecosystem productivity. Nevertheless, how plant stoichiometry responds to warming when interannual rainfall variation is considered, remains poorly understood. We performed a field soil warming experiment (+5°C) using buried heating cables in subtropical areas of China from 2015 to 2018. Stoichiometric patterns of foliar C:N:P:K:Ca:Mg, non-structural carbohydrate, and stable isotope of Cunninghamia lanceolata seedlings were studied. Our results showed that soil warming decreased foliar P and K concentrations, C:Ca, P:Ca, and P:Mg ratios. However, soil warming increased foliar Ca concentration, δ15N value, C:P and N:P ratios. The response ratios of foliar N, C:N, and δ15N to soil warming were correlated with rainfall. Our findings indicate that there was non-homeostasis of N and C:N under warming conditions. Three possible reasons for this result are considered and include interannual variations in rainfall, increased loss of N, and N limitation in leaves. Piecewise structural equation models showed that stoichiometric non-homeostasis indirectly affected the growth of C. lanceolata seedlings in response to soil warming. Consequently, the growth of C. lanceolata seedlings remained unchanged under the warming treatment. Taken together, our results advance the understanding of how altered foliar stoichiometry relates to changes in plant growth in response to climate warming. Our results emphasize the importance of rainfall variations for modulating the responses of plant chemical properties to warming. This study provides a useful method for predicting the effects of climate warming on economically important timber species.
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Affiliation(s)
- Qiufang Zhang
- College of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
- College of Urban and Environmental Sciences, Peking University, Beijing, China
| | - Dawei Luo
- Department of Renewable Resources, Faculty of Agricultural, Life and Environmental Sciences, University of Alberta, Edmonton, AB, Canada
| | - Liuming Yang
- College of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
| | - Jinsheng Xie
- College of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
| | - Zhijie Yang
- College of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
| | - Jiacong Zhou
- College of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
| | - Xiaojie Li
- College of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
| | - Decheng Xiong
- College of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
| | - Yuehmin Chen
- College of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
| | - Yusheng Yang
- College of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
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20
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Zhang B, Yuan Y, Shu L, Grosholz E, Guo Y, Hastings A, Cuda JP, Zhang J, Zhai L, Qiu J. Scaling up experimental stress responses of grass invasion to predictions of continental-level range suitability. Ecology 2021; 102:e03417. [PMID: 34043815 DOI: 10.1002/ecy.3417] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 02/03/2021] [Accepted: 03/15/2021] [Indexed: 11/10/2022]
Abstract
Understanding how the biological invasion is driven by environmental factors will improve model prediction and advance early detection, especially in the context of accelerating anthropogenic ecological changes. Although a large body of studies has examined how favorable environments promote biological invasions, a more comprehensive and mechanistic understanding of invasive species response to unfavorable/stressful conditions is still developing. Grass invasion has been problematic across the globe; in particular, C4 grass invaders, with high drought tolerance, adaptations to high temperatures, and high water use efficiency, could become more severe. Here, we conducted a rigorous microcosm experiment, with one of the most damaging invasive C4 grass, cogongrass (Imperata cylindrica), to explore how cogongrass responds to soil water and nutrient stress. We further integrated the results of the microcosm study with a species distribution model to (1) corroborate greenhouse results with field observations and (2) validate the robustness of our findings at subcontinental scales. Both the microcosm experiments and species distribution model agreed that soil water stress had a stronger impact on cogongrass than the nutrient one. New vegetative growth of cogongrass continued to be inhibited by the prior water stress. The significant water effect on cogongrass total biomass was supported by the finding that both allometric and biochemical traits of cogongrass did not show significant responses to the changes in water treatment. Different to the conventional wisdom that nutrient enrichment plays a bigger role in facilitating biological invasions, this study highlighted the possibility that water conditions may have a more substantial effect on some aggressive invaders. Therefore, an important implication of this study on biological conservation is that field managers might take advantage of the negative effect of global drought on some invasive species to increase the efficiency of their controlling efforts because invasive species may become more vulnerable under drought effect.
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Affiliation(s)
- Bo Zhang
- Department of Natural Resource Ecology and Management, Oklahoma State University, 008C Agriculture Hall, Stillwater, Oklahoma, 74078, USA.,Department of Environmental Science and Policy, University of California, Davis, 1 Shields Avenue, Davis, California, 95616, USA
| | - Yingdan Yuan
- Co-Innovation Center for Sustainable Forestry in Southern China, Jiangsu Province Key Laboratory of Soil and Water Conservation and Ecological Restoration, Nanjing Forestry University, 159 Longpan Road, Nanjing, Jiangsu, 210037, China.,Jiangsu Key Laboratory of Crop Genetics and Physiology, College of Horticulture and Plant Protection, Yangzhou University, No. 88, Daxue South Road, Yangzhou, Jiangsu, 225127, China
| | - Lele Shu
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Donggang West Road 320, Lanzhou, Gansu, 730000, China.,Key Laboratory of Land Surface Process and Climate Change in Cold and Arid Regions, Chinese Academy of Sciences, 320 Donggang West Road, Lanzhou, Guansu, 730000, China
| | - Edwin Grosholz
- Department of Environmental Science and Policy, University of California, Davis, 1 Shields Avenue, Davis, California, 95616, USA
| | - Yuxi Guo
- School of Forest Resources and Conservation, Fort Lauderdale Research and Education Center, University of Florida, 3205 College Avenue, Davie, Florida, 33314, USA
| | - Alan Hastings
- Department of Environmental Science and Policy, University of California, Davis, 1 Shields Avenue, Davis, California, 95616, USA.,Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, New Mexico, 87501, USA
| | - James P Cuda
- Entomology & Nematology Department, University of Florida, Gainesville, Florida, 32611, USA
| | - Jinchi Zhang
- Co-Innovation Center for Sustainable Forestry in Southern China, Jiangsu Province Key Laboratory of Soil and Water Conservation and Ecological Restoration, Nanjing Forestry University, 159 Longpan Road, Nanjing, Jiangsu, 210037, China
| | - Lu Zhai
- Department of Natural Resource Ecology and Management, Oklahoma State University, 008C Agriculture Hall, Stillwater, Oklahoma, 74078, USA
| | - Jiangxiao Qiu
- School of Forest Resources and Conservation, Fort Lauderdale Research and Education Center, University of Florida, 3205 College Avenue, Davie, Florida, 33314, USA
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21
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Paponov IA, Fliegmann J, Narayana R, Maffei ME. Differential root and shoot magnetoresponses in Arabidopsis thaliana. Sci Rep 2021; 11:9195. [PMID: 33911161 PMCID: PMC8080623 DOI: 10.1038/s41598-021-88695-6] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Accepted: 04/15/2021] [Indexed: 12/27/2022] Open
Abstract
The geomagnetic field (GMF) is one of the environmental stimuli that plants experience continuously on Earth; however, the actions of the GMF on plants are poorly understood. Here, we carried out a time-course microarray experiment to identify genes that are differentially regulated by the GMF in shoot and roots. We also used qPCR to validate the activity of some genes selected from the microarray analysis in a dose-dependent magnetic field experiment. We found that the GMF regulated genes in both shoot and roots, suggesting that both organs can sense the GMF. However, 49% of the genes were regulated in a reverse direction in these organs, meaning that the resident signaling networks define the up- or downregulation of specific genes. The set of GMF-regulated genes strongly overlapped with various stress-responsive genes, implicating the involvement of one or more common signals, such as reactive oxygen species, in these responses. The biphasic dose response of GMF-responsive genes indicates a hormetic response of plants to the GMF. At present, no evidence exists to indicate any evolutionary advantage of plant adaptation to the GMF; however, plants can sense and respond to the GMF using the signaling networks involved in stress responses.
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Affiliation(s)
- Ivan A Paponov
- Department of Food Science, Aarhus University, Aarhus, Denmark
| | - Judith Fliegmann
- ZMBP Center for Plant Molecular Biology, University of Tübingen, Tübingen, Germany
| | - Ravishankar Narayana
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL, USA
| | - Massimo E Maffei
- Plant Physiology Unit, Department Life Sciences and Systems Biology, University of Turin, Turin, Italy.
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22
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Wan T, Feng Y, Liang C, Pan L, He L, Cai Y. Metabolomics and Transcriptomics Analyses of Two Contrasting Cherry Rootstocks in Response to Drought Stress. BIOLOGY 2021; 10:201. [PMID: 33800812 PMCID: PMC8001747 DOI: 10.3390/biology10030201] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/06/2021] [Revised: 02/27/2021] [Accepted: 03/02/2021] [Indexed: 11/24/2022]
Abstract
Drought is one of the main factors affecting sweet cherry yields, and cherry rootstocks can provide a range of tree vigor levels to better match sweet cherries with the characteristics of the soil. To investigate the molecular events of the cherry to water deficiency, we performed transcriptomic and metabolomic analyses of Prunus mahaleb CDR-1 (drought-tolerant cherry rootstock (DT)) and P. cerasus × P. canescens Gisela 5 (drought-susceptible cherry rootstock (DS)), respectively. The results revealed 253 common drought-responsive genes in leaves and roots in DT and 17 in DS; 59 upregulated metabolites were explored in leaves in DT and 19 were explored in DS. Differentially expressed metabolites related to the cyanoamino acid metabolism pathway and phenylpropanoid biosynthesis pathway may be key factors in the difference in drought resistance in the two rootstocks. Moreover, six central metabolites-3-cyanoalanine, phenylalanine, quinic acid, asparagine, p-benzoquinone, and phytosphingosine-were identified as potential biological markers of drought response in cherries and may be key factors in the difference in drought resistance, along with caffeic acid and chlorogenic acid. We also selected 17 differentially expressed genes as core candidate genes and the mechanism of DT in response to drought is summarized.
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Affiliation(s)
- Tian Wan
- College of Horticulture, Northwest Agriculture & Forestry University, No.3 Taicheng Road, Yangling 712100, China; (T.W.); (Y.F.); (L.P.)
| | - Ying Feng
- College of Horticulture, Northwest Agriculture & Forestry University, No.3 Taicheng Road, Yangling 712100, China; (T.W.); (Y.F.); (L.P.)
| | - Chenglin Liang
- Haidu College, Qingdao Agricultural University, Laiyang 265200, China;
| | - Liuyi Pan
- College of Horticulture, Northwest Agriculture & Forestry University, No.3 Taicheng Road, Yangling 712100, China; (T.W.); (Y.F.); (L.P.)
| | - Ling He
- College of Horticulture, Northwest Agriculture & Forestry University, No.3 Taicheng Road, Yangling 712100, China; (T.W.); (Y.F.); (L.P.)
| | - Yuliang Cai
- College of Horticulture, Northwest Agriculture & Forestry University, No.3 Taicheng Road, Yangling 712100, China; (T.W.); (Y.F.); (L.P.)
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23
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Xie J, Yan Z, Wang G, Xue W, Li C, Chen X, Chen D. A Bacterium Isolated From Soil in a Karst Rocky Desertification Region Has Efficient Phosphate-Solubilizing and Plant Growth-Promoting Ability. Front Microbiol 2021; 11:625450. [PMID: 33597933 PMCID: PMC7882523 DOI: 10.3389/fmicb.2020.625450] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Accepted: 12/28/2020] [Indexed: 11/21/2022] Open
Abstract
Phosphorus in the soil accessible to plants can easily be combined with calcium ion, the content of which is high in karst rocky desertification (KRD) regions, thereby resulting in a low utilization efficiency of phosphorus. The application of phosphate-solubilizing bacteria (PSB) from the KRD region would facilitate enhanced phosphate availability in the soil. In the present study, the strains belonging to Acinetobacter, Paraburkholderia, and Pseudomonas with efficient phosphate-solubilizing ability were isolated from fruit tree rhizosphere soils in KRD regions. Particularly, Acinetobacter sp. Ac-14 had a sustained and stable phosphate-solubilizing ability (439–448 mg/L, 48–120 h). Calcium carbonate decreased the phosphate-solubilizing ability in liquid medium; however, it did not affect the solubilization index in agar-solidified medium. When cocultivated with Arabidopsis thaliana seedling, Ac-14 increased the number of lateral roots, fresh weight, and chlorophyll content of the seedlings. Metabolomics analysis revealed that Ac-14 could produce 23 types of organic acids, majorly including gluconic acid and D-(-)-quinic acid. Expression of Ac-14 glucose dehydrogenase gene (gcd) conferred Pseudomonas sp. Ps-12 with a sustained and stable phosphate-solubilizing ability, suggesting that the production of gluconic acid is an important mechanism that confers phosphate solubilization in bacteria. Moreover, Ac-14 could also produce indole acetic acid and ammonia. Collectively, the isolated Ac-14 from KRD regions possess an efficient phosphate-solubilizing ability and plant growth-promoting effect which could be exploited for enhancing phosphorus availability in KRD regions. This study holds significance for the improvement of soil fertility and agricultural sustainable development in phosphorus-deficient KRD regions.
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Affiliation(s)
- Jinge Xie
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin, China
| | - Zongqiang Yan
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin, China
| | - Guifen Wang
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin, China
| | - Wenzhi Xue
- Department of Biochemistry and Molecular Biology, College of Life Sciences, Nankai University, Tianjin, China
| | - Cong Li
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin, China
| | - Xiwen Chen
- Department of Biochemistry and Molecular Biology, College of Life Sciences, Nankai University, Tianjin, China
| | - Defu Chen
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin, China
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Fraisier-Vannier O, Chervin J, Cabanac G, Puech V, Fournier S, Durand V, Amiel A, André O, Benamar OA, Dumas B, Tsugawa H, Marti G. MS-CleanR: A Feature-Filtering Workflow for Untargeted LC-MS Based Metabolomics. Anal Chem 2020; 92:9971-9981. [PMID: 32589017 DOI: 10.1021/acs.analchem.0c01594] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Untargeted metabolomics using liquid chromatography-mass spectrometry (LC-MS) is currently the gold-standard technique to determine the full chemical diversity in biological samples. However, this approach still has many limitations; notably, the difficulty of accurately estimating the number of unique metabolites profiled among the thousands of MS ion signals arising from chromatograms. Here, we describe a new workflow, MS-CleanR, based on the MS-DIAL/MS-FINDER suite, which tackles feature degeneracy and improves annotation rates. We show that implementation of MS-CleanR reduces the number of signals by nearly 80% while retaining 95% of unique metabolite features. Moreover, the annotation results from MS-FINDER can be ranked according to the database chosen by the user, which enhance identification accuracy. Application of MS-CleanR to the analysis of Arabidopsis thaliana grown in three different conditions fostered class separation resulting from multivariate data analysis and led to annotation of 75% of the final features. The full workflow was applied to metabolomic profiles from three strains of the leguminous plant Medicago truncatula that have different susceptibilities to the oomycete pathogen Aphanomyces euteiches. A group of glycosylated triterpenoids overrepresented in resistant lines were identified as candidate compounds conferring pathogen resistance. MS-CleanR is implemented through a Shiny interface for intuitive use by end-users (available at https://github.com/eMetaboHUB/MS-CleanR).
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Affiliation(s)
- Ophélie Fraisier-Vannier
- Pharma Dev, Université de Toulouse, IRD, UPS, 31400 Toulouse, France.,Institut de Recherche en Informatique de Toulouse, Université de Toulouse, UPS, Toulouse 31400, France
| | - Justine Chervin
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France.,Metatoul-AgromiX Platform, MetaboHUB, National Infrastructure for Metabolomics and Fluxomics, LRSV, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France
| | - Guillaume Cabanac
- Institut de Recherche en Informatique de Toulouse, Université de Toulouse, UPS, Toulouse 31400, France
| | - Virginie Puech
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France.,Metatoul-AgromiX Platform, MetaboHUB, National Infrastructure for Metabolomics and Fluxomics, LRSV, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France
| | - Sylvie Fournier
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France.,Metatoul-AgromiX Platform, MetaboHUB, National Infrastructure for Metabolomics and Fluxomics, LRSV, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France
| | - Virginie Durand
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France
| | - Aurélien Amiel
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France.,De Sangosse, Bonnel, 47480 Pont-Du-Casse, France
| | - Olivier André
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France.,De Sangosse, Bonnel, 47480 Pont-Du-Casse, France
| | - Omar Abdelaziz Benamar
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France.,De Sangosse, Bonnel, 47480 Pont-Du-Casse, France
| | - Bernard Dumas
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France
| | - Hiroshi Tsugawa
- RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan.,RIKEN Center for Integrative Medical Science, Yokohama 230-0045, Japan
| | - Guillaume Marti
- Pharma Dev, Université de Toulouse, IRD, UPS, 31400 Toulouse, France.,Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France.,Metatoul-AgromiX Platform, MetaboHUB, National Infrastructure for Metabolomics and Fluxomics, LRSV, Université de Toulouse, CNRS, UPS, 31400 Toulouse, France.,Institut de Recherche en Informatique de Toulouse, Université de Toulouse, UPS, Toulouse 31400, France
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25
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Abstract
Climate change causes significant alterations in precipitation and temperature regimes that are predicted to become more extreme throughout the next century. Microorganisms are important members within ecosystems, and how they respond to these changing abiotic stressors has large implications for the functioning of ecosystems, the recycling of nutrients, and the health of the aboveground plant community. Drought stress negatively impacts microbial activity, but the magnitude of this stress response may be dependent on above- and belowground interactions. This study demonstrates that beneficial associations between plants and microbes can enhance tolerance to abiotic stress. Drought stress negatively impacts microbial activity, but the magnitude of stress responses is likely dependent on a diversity of belowground interactions. Populus trichocarpa individuals and no-plant bulk soils were exposed to extended drought (∼0.03% gravimetric water content [GWC] after 12 days), rewet, and a 12-day “recovery” period to determine the effects of plant presence in mediating soil microbiome stability to water stress. Plant metabolomic analyses indicated that drought exposure increased host investment in C and N metabolic pathways (amino acids, fatty acids, phenolic glycosides) regardless of recovery. Several metabolites positively correlated with root-associated microbial alpha-diversity, but not those of soil communities. Soil bacterial community composition shifted with P. trichocarpa presence and with drought relative to irrigated controls, whereas soil fungal composition shifted only with plant presence. However, root fungal communities strongly shifted with drought, whereas root bacterial communities changed to a lesser degree. The proportion of bacterial water-stress opportunistic operational taxonomic units (OTUs) (enriched counts in drought) was high (∼11%) at the end of drying phases and maintained after rewet and recovery phases in bulk soils, but it declined over time in soils with plants present. For root fungi, opportunistic OTUs were high at the end of recovery in drought treatments (∼17% abundance), although relatively not responsive in soils, particularly planted soils (<0.5% abundance for sensitive or opportunistic). These data indicate that plants modulate soil and root-associated microbial drought responses via tight plant-microbe linkages during extreme drought scenarios, but trajectories after extreme drought vary with plant habitat and microbial functional groups. IMPORTANCE Climate change causes significant alterations in precipitation and temperature regimes that are predicted to become more extreme throughout the next century. Microorganisms are important members within ecosystems, and how they respond to these changing abiotic stressors has large implications for the functioning of ecosystems, the recycling of nutrients, and the health of the aboveground plant community. Drought stress negatively impacts microbial activity, but the magnitude of this stress response may be dependent on above- and belowground interactions. This study demonstrates that beneficial associations between plants and microbes can enhance tolerance to abiotic stress.
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26
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Zhao Q, Guo J, Shu M, Wang P, Hu S. Impacts of drought and nitrogen enrichment on leaf nutrient resorption and root nutrient allocation in four Tibetan plant species. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 723:138106. [PMID: 32222509 DOI: 10.1016/j.scitotenv.2020.138106] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 03/18/2020] [Accepted: 03/20/2020] [Indexed: 05/18/2023]
Abstract
Plant nutrient resorption, a process by which plant withdraws nutrients from senescing structures to developing tissues, can significantly affect plant growth, litter decomposition and nutrient cycling. Global change factors, such as nitrogen (N) deposition and altered precipitation, may mediate plant nutrient resorption and allocation. The ongoing global change is accompanied with increased N inputs and drought frequency in many regions. However, the interactive effects of increased N availability and drought on plant nutrient-responses remain largely unclear. In a pot experiment, we examined the impacts of N enrichment and drought on leaf N and phosphorous (P) resorption and root nutrient allocation in four species from the Qinghai-Tibet Plateau, including two graminoid species (Kobresia capillifolia and Elymus nutans) and two forb species (Delphinium kamaonense and Aster diplostephioides). Our results showed divergent resorption patterns within the two functional groups. E. nutans and D. kamaonense showed stronger N resorption than K. capillifolia and A. diplostephioides. N addition did not alter their N resorption efficiencies, but decreased the N resorption proficiencies of the former two species. In contrast, drought did not affect N or P resorption proficiencies, but decreased N resorption efficiency of K. capillifolia. Besides, N addition facilitated P resorption in K. capillifolia and D. kamaonense, and drought did the same in A. diplostephioides, suggesting that P resorption plays an important role in nutrient conservation in these species. Moreover, species with stronger N resorption allocated more biomass C or N to aboveground and enhanced their litter quality under N enrichment, while species with weaker resorption allocated more biomass C and/or N to belowground part under drought. Together, these results show that the responses of nutrient resorption and allocation to N enrichment and drought are highly species-specific. Future studies should take these differential responses into consideration to better predict litter decomposition and ecosystem nutrient cycling.
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Affiliation(s)
- Qingzhou Zhao
- Ecosystem Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Jin Guo
- Ecosystem Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Meng Shu
- Ecosystem Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Peng Wang
- Ecosystem Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.
| | - Shuijin Hu
- Ecosystem Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China; Department of Entomology & Plant Pathology, North Carolina State University, Raleigh, NC 27695, United States.
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27
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Different "metabolomic niches" of the highly diverse tree species of the French Guiana rainforests. Sci Rep 2020; 10:6937. [PMID: 32332903 PMCID: PMC7181821 DOI: 10.1038/s41598-020-63891-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2019] [Accepted: 03/31/2020] [Indexed: 11/20/2022] Open
Abstract
Tropical rainforests harbor a particularly high plant diversity. We hypothesize that potential causes underlying this high diversity should be linked to distinct overall functionality (defense and growth allocation, anti-stress mechanisms, reproduction) among the different sympatric taxa. In this study we tested the hypothesis of the existence of a metabolomic niche related to a species-specific differential use and allocation of metabolites. We tested this hypothesis by comparing leaf metabolomic profiles of 54 species in two rainforests of French Guiana. Species identity explained most of the variation in the metabolome, with a species-specific metabolomic profile across dry and wet seasons. In addition to this “homeostatic” species-specific metabolomic profile significantly linked to phylogenetic distances, also part of the variance (flexibility) of the metabolomic profile was explained by season within a single species. Our results support the hypothesis of the high diversity in tropical forest being related to a species-specific metabolomic niche and highlight ecometabolomics as a tool to identify this species functional diversity related and consistent with the ecological niche theory.
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28
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Penuelas J, Janssens IA, Ciais P, Obersteiner M, Sardans J. Anthropogenic global shifts in biospheric N and P concentrations and ratios and their impacts on biodiversity, ecosystem productivity, food security, and human health. GLOBAL CHANGE BIOLOGY 2020; 26:1962-1985. [PMID: 31912629 DOI: 10.1111/gcb.14981] [Citation(s) in RCA: 68] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2019] [Revised: 12/23/2019] [Accepted: 12/24/2019] [Indexed: 06/10/2023]
Abstract
The availability of carbon (C) from high levels of atmospheric carbon dioxide (CO2 ) and anthropogenic release of nitrogen (N) is increasing, but these increases are not paralleled by increases in levels of phosphorus (P). The current unstoppable changes in the stoichiometries of C and N relative to P have no historical precedent. We describe changes in P and N fluxes over the last five decades that have led to asymmetrical increases in P and N inputs to the biosphere. We identified widespread and rapid changes in N:P ratios in air, soil, water, and organisms and important consequences to the structure, function, and biodiversity of ecosystems. A mass-balance approach found that the combined limited availability of P and N was likely to reduce C storage by natural ecosystems during the remainder of the 21st Century, and projected crop yields of the Millennium Ecosystem Assessment indicated an increase in nutrient deficiency in developing regions if access to P fertilizer is limited. Imbalances of the N:P ratio would likely negatively affect human health, food security, and global economic and geopolitical stability, with feedbacks and synergistic effects on drivers of global environmental change, such as increasing levels of CO2 , climatic warming, and increasing pollution. We summarize potential solutions for avoiding the negative impacts of global imbalances of N:P ratios on the environment, biodiversity, climate change, food security, and human health.
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Affiliation(s)
- Josep Penuelas
- CSIC, Global Ecology Unit, CREAF-CSIC-UAB, Bellaterra, Spain
- CREAF, Cerdanyola del Valles, Spain
- Global Change Research Institute, Czech Academy of Sciences, Brno, Czech Republic
| | - Ivan A Janssens
- Research Group Plants and Ecosystems (PLECO), Department of Biology, University of Antwerp, Wilrijk, Belgium
| | - Philippe Ciais
- Laboratoire des Sciences du Climat et de l'Environnement, IPSL CEA CNRS UVSQ UPSACLAY, Gif-sur-Yvette, France
| | - Michael Obersteiner
- Ecosystems Services and Management, International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria
| | - Jordi Sardans
- CSIC, Global Ecology Unit, CREAF-CSIC-UAB, Bellaterra, Spain
- CREAF, Cerdanyola del Valles, Spain
- Global Change Research Institute, Czech Academy of Sciences, Brno, Czech Republic
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Jia H, Wang L, Li J, Sun P, Lu M, Hu J. Comparative metabolomics analysis reveals different metabolic responses to drought in tolerant and susceptible poplar species. PHYSIOLOGIA PLANTARUM 2020; 168:531-546. [PMID: 31637725 DOI: 10.1111/ppl.13036] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2019] [Revised: 10/09/2019] [Accepted: 10/10/2019] [Indexed: 06/10/2023]
Abstract
Drought is one of the critical factors limiting tree growth and survival. Clarifying the adaptation to drought will facilitate the cultivation of drought-tolerant varieties. Metabolites, as direct signatures of biochemical functions, can uncover the biochemical pathways involved in drought responses. Here, we investigated the physiological and metabolic responses of drought-tolerant Populus simonii and drought-susceptible Populus deltoides cv. 'Danhong' to drought. Under drought conditions, P. simonii grew better and had a higher photosynthetic rate than P. deltoides cv. 'Danhong'. Global untargeted metabolite profiling was analyzed using gas chromatography time-of-flight mass spectrometry system. A total of 69 and 53 differentially accumulated metabolites were identified in drought-stressed P. simonii and P. deltoides cv. 'Danhong', respectively. The metabolisms of carbohydrate, amino acid, lipid and energy were involved in the drought responses common to both poplar species. The citric acid cycle was significantly inhibited to conserve energy, whereas multiple carbohydrates acting as osmolytes and osmoprotectants were induced to alleviate the adverse effects of drought stress. Unlike P. deltoides cv. 'Danhong', P. simonii underwent a specific metabolic reprogramming that enhanced non-enzymatic antioxidants, coordinated the cellular carbon/nitrogen balance and regulated wax biosynthesis. These results provide a reference for characterizing the mechanisms involved in poplar response to drought and for enhancing the drought tolerance of forest trees.
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Affiliation(s)
- Huixia Jia
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China
| | - Lijuan Wang
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China
| | - Jianbo Li
- Experimental Center of Forestry in North China, Chinese Academy of Forestry, Beijing, 102300, China
| | - Pei Sun
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China
| | - Mengzhu Lu
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China
| | - Jianjun Hu
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China
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Umair M, Sun N, Du H, Chen K, Tao H, Yuan J, Abbasi AM, Liu C. Differential stoichiometric responses of shrubs and grasses to increased precipitation in a degraded karst ecosystem in Southwestern China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 700:134421. [PMID: 31693953 DOI: 10.1016/j.scitotenv.2019.134421] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2019] [Revised: 09/10/2019] [Accepted: 09/11/2019] [Indexed: 06/10/2023]
Abstract
The elemental concentrations of both plants and soils are sensitive to variations in precipitation due to the limiting roles of water on soil processes and plant growth in karst ecosystems of Southwestern China; however, precipitation is predicted to increase in this region. Nevertheless, it is unclear how the elemental composition of soils and plants might respond to such increases in moisture. Particularly, how potassium (K) may behave as a key mediator in the regulation of the water potential of plants. For this study, the responses of the elemental composition of both soils and plants to the variable addition of water were investigated. Two grasses (Cymbopogon distans and Arundinella setosa) and two shrubs (Carissa spinarum and Bauhinia brachycarpa) were investigated under four levels of watering treatments 0%, +20%, +40%, and +60%, relative to the annual rainfall, respectively. Compared to the control (CK), the soil water content (SWC) increased to 3.75, 3.86, and 4.34 mg g-1 in T1, T2, and T3 groups, respectively (p < 0.05). Non-metal elements (C, H, N, S, and P, except for Si) in the soil were relatively stable with water addition; however, metal elements (Al, Na, Mg, Fe, and K, along with Si) increased significantly, whereas Zn and Ca decreased (p < 0.05). With water addition, leaf N and P remained unchanged in all four species, while K, Mg, and S decreased in both shrubs (higher C:K, N:K, and P:K). Increases in Fe, Si, and K were observed in both grasses (lower C:K, N:K, and P:K), which suggested that K played distinct roles for water regulation in shrubs and grasses. These findings implied that the elemental compositions of both soils and plants might be altered with increasing precipitation in the future, where different plant types may adopt distinct K-regulation strategies to cope with variable soil moisture.
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Affiliation(s)
- Muhammad Umair
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China; Shanghai Urban Forest Research Station, State Forestry and Grassland Administration, China
| | - Ningxiao Sun
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China; Shanghai Urban Forest Research Station, State Forestry and Grassland Administration, China; Key Laboratory of Urban Agriculture (South), Ministry of Agriculture, China
| | - Hongmei Du
- School of Design, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Kehao Chen
- School of Design, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Huimin Tao
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Jun Yuan
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Arshad Mehmood Abbasi
- Department of Environment Sciences, COMSATS University Islamabad, Abbottabad Campus, 22060, Pakistan
| | - Chunjiang Liu
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China; Shanghai Urban Forest Research Station, State Forestry and Grassland Administration, China; Key Laboratory of Urban Agriculture (South), Ministry of Agriculture, China.
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Skoneczny D, Zhu X, Weston PA, Gurr GM, Callaway RM, Weston LA. Production of pyrrolizidine alkaloids and shikonins in Echium plantagineum L. in response to various plant stressors. PEST MANAGEMENT SCIENCE 2019; 75:2530-2541. [PMID: 31267648 DOI: 10.1002/ps.5540] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2019] [Revised: 06/16/2019] [Accepted: 06/27/2019] [Indexed: 05/24/2023]
Abstract
BACKGROUND Echium plantagineum, a native of Europe and Africa, is a noxious invasive weed in Australia forming monocultural stands in pastures and rangelands. It produces a complex mixture of bioactive secondary metabolites, including toxic pyrrolizidine alkaloids (PAs), that protect the plant from insect and livestock herbivory and naphthoquinones (NQs), which suppress competition from weeds, insects and pathogens, and also influence invasion success. However, the extent to which allelochemical production is impacted by environmental factors, thereby influencing plant defense against pests, remains unclear. RESULTS Following plant stress induced by drought, herbivory and high temperature, extracts of E. plantagineum shoots and roots were subjected to metabolic profiling by UPLC-MS-DAD- QToF mass spectrometry. Abundance of NQs, especially deoxyshikonin, shikonin and dimethylacrylshikonin, rapidly increased in roots exposed to elevated temperatures. Water withholding initially increased NQ abundance, but prolonged drought resulted in reduced total PAs and NQs. Intraspecific competition elevated the production of NQs, whereas simulated herbivory had no initial effect on NQs. Following herbivory, the abundance of the PA 3'-O-acetylechimidine-N-oxide in seedling shoots was increased. CONCLUSIONS Differential accumulation of defense metabolites by E. plantagineum following exposure to various stressors suggested stress-dependent biosynthetic regulation, particularly with respect to NQ production, which was rapidly induced following drought, intraspecific competition and high temperature treatment, thereby positively impacting resistance or defense against herbivores, weeds and pathogens. We propose that trade-offs between above- and below-ground metabolism in E. plantagineum may facilitate allelochemical production in response to stress, rendering plants with an enhanced ability to defend against other neighboring plants, insects and microbes, with allelochemical production further facilitated by catabolic recycling following lengthier exposure to stress. © 2019 Society of Chemical Industry.
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Affiliation(s)
- Dominik Skoneczny
- Graham Centre for Agricultural Innovation, Charles Sturt University, Wagga Wagga, New South Wales, Australia
| | - Xiaocheng Zhu
- Graham Centre for Agricultural Innovation, Charles Sturt University, Wagga Wagga, New South Wales, Australia
| | - Paul A Weston
- Graham Centre for Agricultural Innovation, Charles Sturt University, Wagga Wagga, New South Wales, Australia
| | - Geoff M Gurr
- Graham Centre for Agricultural Innovation, Charles Sturt University, Orange, New South Wales, Australia
- Institute of Applied Ecology, Fujian Agriculture & Forestry University, Fuzhou, China
| | - Ragan M Callaway
- Division of Biological Science, University of Montana, Missoula, MT, USA
| | - Leslie A Weston
- Graham Centre for Agricultural Innovation, Charles Sturt University, Wagga Wagga, New South Wales, Australia
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Orians CM, Schweiger R, Dukes JS, Scott ER, Müller C. Combined impacts of prolonged drought and warming on plant size and foliar chemistry. ANNALS OF BOTANY 2019; 124:41-52. [PMID: 30698658 PMCID: PMC6676383 DOI: 10.1093/aob/mcz004] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2018] [Accepted: 01/15/2019] [Indexed: 05/12/2023]
Abstract
BACKGROUND AND AIMS Future shifts in precipitation regimes and temperature are expected to affect plant traits dramatically. To date, many studies have explored the effects of acute stresses, but few have investigated the consequences of prolonged shifts in climatic conditions on plant growth and chemistry. METHODS Plant size and metabolite profiles were assessed on naturally occurring Plantago lanceolata plants growing under different precipitation (ambient, 50 % less than ambient = drought) and temperature (ambient, +0.8, +2.4 and +4.0 °C above ambient) treatments at the Boston Area Climate Experiment (constructed in 2007). KEY RESULTS The analysis of primary and secondary metabolites revealed pronounced effects of drought, and a precipitation × temperature interaction. Strikingly, the effects of precipitation were minimal at the two lower temperatures but marked at the two higher temperatures. Compared with the ambient condition, plants in the drought plots had lower concentrations of foliar nitrogen, amino acids and most sugars, and higher concentrations of sorbitol, citrate and malate, common stress-induced metabolites. This pattern was especially evident at high temperatures. Moreover, drought-exposed plants showed lower concentrations of catalpol, an iridoid glycoside. CONCLUSIONS While the effect of warming on the metabolite profiles was less pronounced, differences were marked when combined with drought. Given the interactive effect of environmental variables on leaf chemistry, and the fact that woody and herbaceous plants seem to differ in their responses to temperature and precipitation, future studies should account for the direct and indirect effects of the community response to multifactorial field conditions.
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Affiliation(s)
- Colin M Orians
- Department of Biology, Tufts University, Medford, MA, USA
| | - Rabea Schweiger
- Department of Chemical Ecology, Bielefeld University, Bielefeld, Germany
| | - Jeffrey S Dukes
- Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN, USA
- Department of Biological Sciences, Purdue University, West Lafayette, IN, USA
- Department of Biology, University of Massachusetts Boston, Boston, MA, USA
| | - Eric R Scott
- Department of Biology, Tufts University, Medford, MA, USA
| | - Caroline Müller
- Department of Chemical Ecology, Bielefeld University, Bielefeld, Germany
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MacAllister S, Mencuccini M, Sommer U, Engel J, Hudson A, Salmon Y, Dexter KG. Drought-induced mortality in Scots pine: opening the metabolic black box. TREE PHYSIOLOGY 2019; 39:1358-1370. [PMID: 31038161 DOI: 10.1093/treephys/tpz049] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2018] [Revised: 04/11/2019] [Accepted: 04/15/2019] [Indexed: 06/09/2023]
Abstract
Forests are sensitive to droughts, which increase the mortality rate of tree species. Various processes have been proposed to underlie drought-induced tree mortality, including hydraulic failure, carbon starvation and increased susceptibility to natural enemies. To give insights into these processes, we assessed the metabolic effects of a mortality-inducing drought on seedlings of Pinus sylvestris L. (Scots Pine), a widespread and important Eurasian species. We found divergence over time in the foliar metabolic composition of droughted vs well-watered seedlings, with the former showing increased abundance of aromatic amino acids and decreases in secondary metabolism associated with defence. We observed no significant differences amongst provenances in these effects: seedlings from drought-prone areas showed the same foliar metabolic changes under drought as seedlings from moist environments, although morphological effects of drought varied by provenance. Overall, our results demonstrate how severe drought prior to death may target particular primary and secondary metabolic pathways, weakening defences against natural enemies and contributing to the risk of drought-induced mortality in P. sylvestris.
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Affiliation(s)
| | | | - Ulf Sommer
- NBAF-Birmingham, School of Biosciences, University of Birmingham, UK
| | - Jasper Engel
- NBAF-Birmingham, School of Biosciences, University of Birmingham, UK
| | - Andrew Hudson
- School of Biological Sciences, University of Edinburgh, UK
| | | | - Kyle G Dexter
- School of GeoSciences, University of Edinburgh, UK
- Royal Botanic Garden Edinburgh, UK
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Umair M, Sun N, Du H, Yuan J, Abbasi AM, Wen J, Yu W, Zhou J, Liu C. Differential metabolic responses of shrubs and grasses to water additions in arid karst region, southwestern China. Sci Rep 2019; 9:9613. [PMID: 31270427 PMCID: PMC6610130 DOI: 10.1038/s41598-019-46083-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Accepted: 06/20/2019] [Indexed: 01/13/2023] Open
Abstract
Increasing precipitation has been predicted to occur in the karst areas in southwestern regions of China. However, it is little known how various plants respond to increasing precipitation in this region. Here we determined the impacts of water addition on leaf metabolites of grasses (Cymbopogon distans and Arundinella sitosa) and shrubs (Carissa spinarum and Bauhinia brachycarpa) in this area. Four levels of water additions (CK, T1, T2 and T3 indicating 0%, +20%, +40% and +60% relative to the current monthly precipitation, respectively) were designed. Sphingolipids substantially increased in the leaves of all four species with increasing water supply which suggests that these plants adopted biochemical strategy to tolerate the wet stress. However, both shrubs showed decreases in valine and threonine (amino acids), threonate, succinate and ascorbic acid (organic acids), galactose and rhamnose (sugars) and epicatchin and oleamides (secondary metabolites) with increasing water supply. Both grasses increased in the total metabolites at T1, but the total metabolites in A. sitosa significantly decreased at T2 and T3 while remains unchanged in C. distans. Tri-carboxylic acid cycle and amino acid metabolism in shrubs and shikimate pathway in grasses were strongly affected with water supply. Overall, shrubs and grasses respond differentially to variation in water addition in terms of metabolomics, which is helpful in understanding how plants respond to climate change.
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Affiliation(s)
- Muhammad Umair
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Ningxiao Sun
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Hongmei Du
- Design School, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Jun Yuan
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Arshad Mehmood Abbasi
- Department of Environment Sciences, COMSATS University, Islamabad, Abbottabad Campus, Pakistan
| | - Jiahao Wen
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Wenjuan Yu
- Instrumental Analysis Center, Shanghai Jiao Tong University, Shanghai, China
| | - Jinxing Zhou
- Yunnan Karst Ecosystem Research Station, School of Water and Soil Conservation, Beijing Forestry University, Beijing, China
| | - Chunjiang Liu
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China. .,Shanghai Urban Forest Research Station, State Forestry Administration, Shanghai, China. .,Key Laboratory of Urban Agriculture (South), Ministry of Agriculture, Shanghai, 22060, China.
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Vasile FE, Romero AM, Judis MA, Mattalloni M, Virgolini MB, Mazzobre MF. Phenolics composition, antioxidant properties and toxicological assessment of Prosopis alba exudate gum. Food Chem 2019; 285:369-379. [DOI: 10.1016/j.foodchem.2019.02.003] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2018] [Revised: 02/02/2019] [Accepted: 02/05/2019] [Indexed: 01/20/2023]
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Kong RS, Henry HAL. Interactions of plant growth responses to spring freezing and summer drought: a multispecies comparison. AMERICAN JOURNAL OF BOTANY 2019; 106:531-539. [PMID: 30934118 DOI: 10.1002/ajb2.1264] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2018] [Accepted: 01/17/2019] [Indexed: 06/09/2023]
Abstract
PREMISE OF THE STUDY Freezing and drought both result in cellular dehydration, and similar physiological responses to these stressors may result in cross acclimation, whereby prior freezing exposure increases subsequent drought tolerance. We examined how spring freezing influences summer drought tolerance for a range of herbaceous old field species: 6 graminoids (Agrostis stolonifera, Arrhenatherum elatius, Bromus inermis, Festuca rubra, Lolium perenne, Poa compressa) and 2 forbs (Plantago lanceolata, Securigera varia), with the goal of examining the generality of cross acclimation responses. METHODS We exposed the plants to -5°C in the spring and to a 3-week summer drought, and harvested the plants after a 3-week watering/recovery period. We also measured leaf soluble proteins and sugars to explore the potential mechanisms before and during drought stress. KEY RESULTS For Agrostis stolonifera, Bromus inermis, Lolium perenne, Plantago lanceolata, and Poa compressa there was evidence of cross acclimation based on aboveground or belowground biomass, with a reduction in the severity of the drought effect for the plants previously exposed to freezing. Freezing and drought effects were additive for Arrhenatherum elatius, and for the remaining two species the test of the freezing-drought interaction was inconclusive, because significant drought and freezing effects did not co-occur. When present, freezing-drought interactions were not correlated with changes in leaf soluble protein or sugars. CONCLUSIONS Our results reveal that the phenomenon of freezing-drought cross acclimation appears to be common in herbaceous species, and variation among species in cross acclimation indicates that multiple stresses could alter relative species abundances in plant communities.
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Affiliation(s)
- Ricky S Kong
- Department of Biology, The University of Western Ontario, 1151 Richmond Street, London, Ontario, N6A 5B7, Canada
| | - Hugh A L Henry
- Department of Biology, The University of Western Ontario, 1151 Richmond Street, London, Ontario, N6A 5B7, Canada
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Zhang M, Fu MM, Qiu CW, Cao F, Chen ZH, Zhang G, Wu F. Response of Tibetan Wild Barley Genotypes to Drought Stress and Identification of Quantitative Trait Loci by Genome-Wide Association Analysis. Int J Mol Sci 2019; 20:E791. [PMID: 30759829 PMCID: PMC6387302 DOI: 10.3390/ijms20030791] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 02/06/2019] [Accepted: 02/07/2019] [Indexed: 11/23/2022] Open
Abstract
Tibetan wild barley has been identified to show large genetic variation and stress tolerance. A genome-wide association (GWA) analysis was performed to detect quantitative trait loci (QTLs) for drought tolerance using 777 Diversity Array Technology (DArT) markers and morphological and physiological traits of 166 Tibetan wild barley accessions in both hydroponic and pot experiments. Large genotypic variation for these traits was found; and population structure and kinship analysis identified three subpopulations among these barley genotypes. The average LD (linkage disequilibrium) decay distance was 5.16 cM, with the minimum on 6H (0.03 cM) and the maximum on 4H (23.48 cM). A total of 91 DArT markers were identified to be associated with drought tolerance-related traits, with 33, 26, 16, 1, 3, and 12 associations for morphological traits, H⁺K⁺-ATPase activity, antioxidant enzyme activities, malondialdehyde (MDA) content, soluble protein content, and potassium concentration, respectively. Furthermore, 7 and 24 putative candidate genes were identified based on the reference Meta-QTL map and by searching the Barleymap. The present study implicated that Tibetan annual wild barley from Qinghai⁻Tibet Plateau is rich in genetic variation for drought stress. The QTLs detected by genome-wide association analysis could be used in marker-assisting breeding for drought-tolerant barley genotypes and provide useful information for discovery and functional analysis of key genes in the future.
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Affiliation(s)
- Mian Zhang
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China.
- Institute of Applied Biology, Shanxi University, Taiyuan 030006, China.
| | - Man-Man Fu
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China.
| | - Cheng-Wei Qiu
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China.
| | - Fangbin Cao
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China.
| | - Zhong-Hua Chen
- School of Science and Health, Hawkesbury Campus, University of Western Sydney, Penrith, NSW 2751, Australia.
| | - Guoping Zhang
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China.
| | - Feibo Wu
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China.
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China.
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Rivas-Ubach A, Liu Y, Steiner AL, Sardans J, Tfaily MM, Kulkarni G, Kim YM, Bourrianne E, Paša-Tolić L, Peñuelas J, Guenther A. Atmo-ecometabolomics: a novel atmospheric particle chemical characterization methodology for ecological research. ENVIRONMENTAL MONITORING AND ASSESSMENT 2019; 191:78. [PMID: 30649631 DOI: 10.1007/s10661-019-7205-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Accepted: 01/04/2019] [Indexed: 06/09/2023]
Abstract
Aerosol particles play important roles in processes controlling the composition of the atmosphere and function of ecosystems. A better understanding of the composition of aerosol particles is beginning to be recognized as critical for ecological research to further comprehend the link between aerosols and ecosystems. While chemical characterization of aerosols has been practiced in the atmospheric science community, detailed methodology tailored to the needs of ecological research does not exist yet. In this study, we describe an efficient methodology (atmo-ecometabolomics), in step-by-step details, from the sampling to the data analyses, to characterize the chemical composition of aerosol particles, namely atmo-metabolome. This method employs mass spectrometry platforms such as liquid and gas chromatography mass spectrometries (MS) and Fourier transform ion cyclotron resonance MS (FT-ICR-MS). For methodology evaluation, we analyzed aerosol particles collected during two different seasons (spring and summer) in a low-biological-activity ecosystem. Additionally, to further validate our methodology, we analyzed aerosol particles collected in a more biologically active ecosystem during the pollination peaks of three different representative tree species. Our statistical results showed that our sampling and extraction methods are suitable for characterizing the atmo-ecometabolomes in these two distinct ecosystems with any of the analytical platforms. Datasets obtained from each mass spectrometry instrument showed overall significant differences of the atmo-ecometabolomes between spring and summer as well as between the three pollination peak periods. Furthermore, we have identified several metabolites that can be attributed to pollen and other plant-related aerosol particles. We additionally provide a basic guide of the potential use ecometabolomic techniques on different mass spectrometry platforms to accurately analyze the atmo-ecometabolomes for ecological studies. Our method represents an advanced novel approach for future studies in the impact of aerosol particle chemical compositions on ecosystem structure and function and biogeochemistry.
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Affiliation(s)
- Albert Rivas-Ubach
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA.
| | - Yina Liu
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
- Geochemical and Environmental Research Group, Texas A&M University, College Station, TX, 77845, USA
| | - Allison L Steiner
- Department of Climate and Space Sciences and Engineering, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Jordi Sardans
- CREAF, Campus UAB, 08913, Cerdanyola del Vallès, Catalonia, Spain
- Global Ecology Unit CREAF-CSIC, Campus UAB, 08913, Cerdanyola del Vallès, Catalonia, Spain
| | - Malak M Tfaily
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Gourihar Kulkarni
- Atmospheric Sciences and Global Change Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA
| | - Young-Mo Kim
- Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Eric Bourrianne
- Faculté des Sicences et d'Ingénierie, Université de Toulouse III Paul Sabatier, 31400, Toulouse, France
| | - Ljiljana Paša-Tolić
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Josep Peñuelas
- CREAF, Campus UAB, 08913, Cerdanyola del Vallès, Catalonia, Spain
- Global Ecology Unit CREAF-CSIC, Campus UAB, 08913, Cerdanyola del Vallès, Catalonia, Spain
| | - Alex Guenther
- Department of Earth System Science, University of California, Irvine, Irvine, CA, 92697, USA
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Rivas-Ubach A, Peñuelas J, Hódar JA, Oravec M, Paša-Tolić L, Urban O, Sardans J. We Are What We Eat: A Stoichiometric and Ecometabolomic Study of Caterpillars Feeding on Two Pine Subspecies of Pinus sylvestris. Int J Mol Sci 2018; 20:E59. [PMID: 30586850 PMCID: PMC6337320 DOI: 10.3390/ijms20010059] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Revised: 12/17/2018] [Accepted: 12/20/2018] [Indexed: 11/28/2022] Open
Abstract
Many studies have addressed several plant-insect interaction topics at nutritional, molecular, physiological, and evolutionary levels. However, it is still unknown how flexible the metabolism and the nutritional content of specialist insect herbivores feeding on different closely related plants can be. We performed elemental, stoichiometric, and metabolomics analyses on leaves of two coexisting Pinus sylvestris subspecies and on their main insect herbivore; the caterpillar of the processionary moth (Thaumetopoea pityocampa). Caterpillars feeding on different pine subspecies had distinct overall metabolome structure, accounting for over 10% of the total variability. Although plants and insects have very divergent metabolomes, caterpillars showed certain resemblance to their plant-host metabolome. In addition, few plant-related secondary metabolites were found accumulated in caterpillar tissues which could potentially be used for self-defense. Caterpillars feeding on N and P richer needles had lower N and P tissue concentration and higher C:N and C:P ratios, suggesting that nutrient transfer is not necessarily linear through trophic levels and other plant-metabolic factors could be interfering. This exploratory study showed that little chemical differences between plant food sources can impact the overall metabolome of specialist insect herbivores. Significant nutritional shifts in herbivore tissues could lead to larger changes of the trophic web structure.
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Affiliation(s)
- Albert Rivas-Ubach
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
- CREAF, Center for Ecological and Forestry Applications, Cerdanyola del Vallès, 08913 Catalonia, Spain.
| | - Josep Peñuelas
- CREAF, Center for Ecological and Forestry Applications, Cerdanyola del Vallès, 08913 Catalonia, Spain.
- CSIC, Global Ecology Unit CREAF-CEAB-CSIC-UAB, Cerdanyola del Vallès, 08913 Catalonia, Spain.
| | - José Antonio Hódar
- Grupo de Ecología Terrestre, Departamento de Biología Animal y Ecología, Facultad de Ciencias, Universidad de Granada, 18071 Granada, Spain.
| | - Michal Oravec
- Global Change Research Institute, Czech Academy of Sciences, Bĕlidla 4a, CZ-603 00 Brno, Czech Republic.
| | - Ljiljana Paša-Tolić
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
| | - Otmar Urban
- Global Change Research Institute, Czech Academy of Sciences, Bĕlidla 4a, CZ-603 00 Brno, Czech Republic.
| | - Jordi Sardans
- CREAF, Center for Ecological and Forestry Applications, Cerdanyola del Vallès, 08913 Catalonia, Spain.
- CSIC, Global Ecology Unit CREAF-CEAB-CSIC-UAB, Cerdanyola del Vallès, 08913 Catalonia, Spain.
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Gargallo-Garriga A, Preece C, Sardans J, Oravec M, Urban O, Peñuelas J. Root exudate metabolomes change under drought and show limited capacity for recovery. Sci Rep 2018; 8:12696. [PMID: 30140025 PMCID: PMC6107494 DOI: 10.1038/s41598-018-30150-0] [Citation(s) in RCA: 121] [Impact Index Per Article: 20.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Accepted: 07/10/2018] [Indexed: 11/10/2022] Open
Abstract
Root exudates comprise a large variety of compounds released by plants into the rhizosphere, including low-molecular-weight primary metabolites (particularly saccharides, amino acids and organic acids) and secondary metabolites (phenolics, flavonoids and terpenoids). Changes in exudate composition could have impacts on the plant itself, on other plants, on soil properties (e.g. amount of soil organic matter), and on soil organisms. The effects of drought on the composition of root exudates, however, have been rarely studied. We used an ecometabolomics approach to identify the compounds in the exudates of Quercus ilex (holm oak) under an experimental drought gradient and subsequent recovery. Increasing drought stress strongly affected the composition of the exudate metabolome. Plant exudates under drought consisted mainly of secondary metabolites (71% of total metabolites) associated with plant responses to drought stress, whereas the metabolite composition under recovery shifted towards a dominance of primary metabolites (81% of total metabolites). These results strongly suggested that roots exude the most abundant root metabolites. The exudates were changed irreversibly by the lack of water under extreme drought conditions, and the plants could not recover.
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Affiliation(s)
- Albert Gargallo-Garriga
- CSIC, Global Ecology Unit CREAF- CSIC-UAB, Bellaterra, 08193, Catalonia, Spain.
- CREAF, Cerdanyola del Vallès, 08193, Catalonia, Spain.
- Global Change Research Institute, The Czech Academy of Sciences, Belidla 986/4a, CZ-60300, Brno, Czech Republic.
| | - Catherine Preece
- CSIC, Global Ecology Unit CREAF- CSIC-UAB, Bellaterra, 08193, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, 08193, Catalonia, Spain
| | - Jordi Sardans
- CSIC, Global Ecology Unit CREAF- CSIC-UAB, Bellaterra, 08193, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, 08193, Catalonia, Spain
| | - Michal Oravec
- Global Change Research Institute, The Czech Academy of Sciences, Belidla 986/4a, CZ-60300, Brno, Czech Republic
| | - Otmar Urban
- Global Change Research Institute, The Czech Academy of Sciences, Belidla 986/4a, CZ-60300, Brno, Czech Republic
| | - Josep Peñuelas
- CSIC, Global Ecology Unit CREAF- CSIC-UAB, Bellaterra, 08193, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, 08193, Catalonia, Spain
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Peters K, Worrich A, Weinhold A, Alka O, Balcke G, Birkemeyer C, Bruelheide H, Calf OW, Dietz S, Dührkop K, Gaquerel E, Heinig U, Kücklich M, Macel M, Müller C, Poeschl Y, Pohnert G, Ristok C, Rodríguez VM, Ruttkies C, Schuman M, Schweiger R, Shahaf N, Steinbeck C, Tortosa M, Treutler H, Ueberschaar N, Velasco P, Weiß BM, Widdig A, Neumann S, Dam NMV. Current Challenges in Plant Eco-Metabolomics. Int J Mol Sci 2018; 19:E1385. [PMID: 29734799 PMCID: PMC5983679 DOI: 10.3390/ijms19051385] [Citation(s) in RCA: 62] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Revised: 04/24/2018] [Accepted: 04/25/2018] [Indexed: 12/22/2022] Open
Abstract
The relatively new research discipline of Eco-Metabolomics is the application of metabolomics techniques to ecology with the aim to characterise biochemical interactions of organisms across different spatial and temporal scales. Metabolomics is an untargeted biochemical approach to measure many thousands of metabolites in different species, including plants and animals. Changes in metabolite concentrations can provide mechanistic evidence for biochemical processes that are relevant at ecological scales. These include physiological, phenotypic and morphological responses of plants and communities to environmental changes and also interactions with other organisms. Traditionally, research in biochemistry and ecology comes from two different directions and is performed at distinct spatiotemporal scales. Biochemical studies most often focus on intrinsic processes in individuals at physiological and cellular scales. Generally, they take a bottom-up approach scaling up cellular processes from spatiotemporally fine to coarser scales. Ecological studies usually focus on extrinsic processes acting upon organisms at population and community scales and typically study top-down and bottom-up processes in combination. Eco-Metabolomics is a transdisciplinary research discipline that links biochemistry and ecology and connects the distinct spatiotemporal scales. In this review, we focus on approaches to study chemical and biochemical interactions of plants at various ecological levels, mainly plant⁻organismal interactions, and discuss related examples from other domains. We present recent developments and highlight advancements in Eco-Metabolomics over the last decade from various angles. We further address the five key challenges: (1) complex experimental designs and large variation of metabolite profiles; (2) feature extraction; (3) metabolite identification; (4) statistical analyses; and (5) bioinformatics software tools and workflows. The presented solutions to these challenges will advance connecting the distinct spatiotemporal scales and bridging biochemistry and ecology.
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Affiliation(s)
- Kristian Peters
- Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany.
| | - Anja Worrich
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger-Str. 159, 07743 Jena, Germany.
- UFZ-Helmholtz-Centre for Environmental Research, Department Environmental Microbiology, Permoserstraße 15, 04318 Leipzig, Germany.
| | - Alexander Weinhold
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger-Str. 159, 07743 Jena, Germany.
| | - Oliver Alka
- Applied Bioinformatics Group, Center for Bioinformatics, University of Tübingen, Sand 14, 72076 Tübingen, Germany.
| | - Gerd Balcke
- Leibniz Institute of Plant Biochemistry, Cell and Metabolic Biology, Weinberg 3, 06120 Halle (Saale), Germany.
| | - Claudia Birkemeyer
- Institute of Analytical Chemistry, University of Leipzig, Linnéstr. 3, 04103 Leipzig, Germany.
| | - Helge Bruelheide
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Am Kirchtor 1, 06108 Halle (Saale), Germany.
| | - Onno W Calf
- Molecular Interaction Ecology, Institute for Water and Wetland Research (IWWR), Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands.
| | - Sophie Dietz
- Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany.
| | - Kai Dührkop
- Department of Bioinformatics, Friedrich Schiller University Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany.
| | - Emmanuel Gaquerel
- Centre for Organismal Studies, Heidelberg University, Im Neuenheimer Feld 360, 69120 Heidelberg, Germany.
| | - Uwe Heinig
- Weizmann Institute of Science, Faculty of Biochemistry, Department of Plant Sciences, 234 Herzl St., P.O. Box 26, Rehovot 7610001, Israel.
| | - Marlen Kücklich
- Institute of Biology, University of Leipzig, Talstraße 33, 04109 Leipzig, Germany.
| | - Mirka Macel
- Molecular Interaction Ecology, Institute for Water and Wetland Research (IWWR), Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands.
| | - Caroline Müller
- Chemical Ecology, Bielefeld University, Universitätsstr. 25, 33615 Bielefeld, Germany.
| | - Yvonne Poeschl
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
- Institute of Informatics, Martin Luther University Halle-Wittenberg, Von-Seckendorff-Platz 1, 06120 Halle (Saale), Germany.
| | - Georg Pohnert
- Institute of Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743 Jena, Germany.
| | - Christian Ristok
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
| | - Victor Manuel Rodríguez
- Group of Genetics, Breeding and Biochemistry of Brassica, Misión Biológica de Galicia (CSIC), Apartado 28, 36080 Pontevedra, Spain.
| | - Christoph Ruttkies
- Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany.
| | - Meredith Schuman
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany.
| | - Rabea Schweiger
- Chemical Ecology, Bielefeld University, Universitätsstr. 25, 33615 Bielefeld, Germany.
| | - Nir Shahaf
- Weizmann Institute of Science, Faculty of Biochemistry, Department of Plant Sciences, 234 Herzl St., P.O. Box 26, Rehovot 7610001, Israel.
| | - Christoph Steinbeck
- Institute of Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743 Jena, Germany.
| | - Maria Tortosa
- Group of Genetics, Breeding and Biochemistry of Brassica, Misión Biológica de Galicia (CSIC), Apartado 28, 36080 Pontevedra, Spain.
| | - Hendrik Treutler
- Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany.
| | - Nico Ueberschaar
- Institute of Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743 Jena, Germany.
| | - Pablo Velasco
- Group of Genetics, Breeding and Biochemistry of Brassica, Misión Biológica de Galicia (CSIC), Apartado 28, 36080 Pontevedra, Spain.
| | - Brigitte M Weiß
- Institute of Biology, University of Leipzig, Talstraße 33, 04109 Leipzig, Germany.
| | - Anja Widdig
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
- Institute of Biology, University of Leipzig, Talstraße 33, 04109 Leipzig, Germany.
- Research Group of Primate Kin Selection, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.
| | - Steffen Neumann
- Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany.
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
| | - Nicole M van Dam
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger-Str. 159, 07743 Jena, Germany.
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Zinta G, AbdElgawad H, Peshev D, Weedon JT, Van den Ende W, Nijs I, Janssens IA, Beemster GTS, Asard H. Dynamics of metabolic responses to periods of combined heat and drought in Arabidopsis thaliana under ambient and elevated atmospheric CO2. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:2159-2170. [PMID: 29462345 PMCID: PMC6019062 DOI: 10.1093/jxb/ery055] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2017] [Accepted: 02/06/2018] [Indexed: 05/24/2023]
Abstract
As a consequence of global change processes, plants will increasingly be challenged by extreme climatic events, against a background of elevated atmospheric CO2. We analysed responses of Arabidopsis thaliana to periods of a combination of elevated heat and water deficit at ambient and elevated CO2 in order to gain mechanistic insights regarding changes in primary metabolism. Metabolic changes induced by extremes of climate are dynamic and specific to different classes of molecules. Concentrations of soluble sugars and amino acids increased transiently after short (4-d) exposure to heat and drought, and readjusted to control levels under prolonged (8-d) stress. In contrast, fatty acids showed persistent changes during the stress period. Elevated CO2 reduced the impact of stress on sugar and amino acid metabolism, but not on fatty acids. Integrating metabolite data with transcriptome results revealed that some of the metabolic changes were regulated at the transcriptional level. Multivariate analyses grouped metabolites on the basis of stress exposure time, indicating specificity in metabolic responses to short and prolonged stress. Taken together, the results indicate that dynamic metabolic reprograming plays an important role in plant acclimation to climatic extremes. The extent of such metabolic adjustments is less under high CO2, further pointing towards the role of high CO2 in stress mitigation.
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Affiliation(s)
- Gaurav Zinta
- Centre of excellence PLECO (Plants and Ecosystems), Department of Biology, University of Antwerp, Universiteitsplein, Antwerp, Wilrijk, Belgium
- Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, Groenenborgerlaan, Antwerp, Belgium
| | - Hamada AbdElgawad
- Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, Groenenborgerlaan, Antwerp, Belgium
- Department of Botany, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt
| | - Darin Peshev
- Laboratory of Molecular Plant Biology, Institute of Botany and Microbiology, KU Leuven, Leuven-Heverlee, Belgium
| | - James T Weedon
- Centre of excellence PLECO (Plants and Ecosystems), Department of Biology, University of Antwerp, Universiteitsplein, Antwerp, Wilrijk, Belgium
| | - Wim Van den Ende
- Laboratory of Molecular Plant Biology, Institute of Botany and Microbiology, KU Leuven, Leuven-Heverlee, Belgium
| | - Ivan Nijs
- Centre of excellence PLECO (Plants and Ecosystems), Department of Biology, University of Antwerp, Universiteitsplein, Antwerp, Wilrijk, Belgium
| | - Ivan A Janssens
- Centre of excellence PLECO (Plants and Ecosystems), Department of Biology, University of Antwerp, Universiteitsplein, Antwerp, Wilrijk, Belgium
| | - Gerrit T S Beemster
- Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, Groenenborgerlaan, Antwerp, Belgium
| | - Han Asard
- Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, Groenenborgerlaan, Antwerp, Belgium
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Suseela V, Tharayil N. Decoupling the direct and indirect effects of climate on plant litter decomposition: Accounting for stress-induced modifications in plant chemistry. GLOBAL CHANGE BIOLOGY 2018; 24:1428-1451. [PMID: 28986956 DOI: 10.1111/gcb.13923] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2017] [Accepted: 07/16/2017] [Indexed: 06/07/2023]
Abstract
Decomposition of plant litter is a fundamental ecosystem process that can act as a feedback to climate change by simultaneously influencing both the productivity of ecosystems and the flux of carbon dioxide from the soil. The influence of climate on decomposition from a postsenescence perspective is relatively well known; in particular, climate is known to regulate the rate of litter decomposition via its direct influence on the reaction kinetics and microbial physiology on processes downstream of tissue senescence. Climate can alter plant metabolism during the formative stage of tissues and could shape the final chemical composition of plant litter that is available for decomposition, and thus indirectly influence decomposition; however, these indirect effects are relatively poorly understood. Climatic stress disrupts cellular homeostasis in plants and results in the reprogramming of primary and secondary metabolic pathways, which leads to changes in the quantity, composition, and organization of small molecules and recalcitrant heteropolymers, including lignins, tannins, suberins, and cuticle within the plant tissue matrix. Furthermore, by regulating metabolism during tissue senescence, climate influences the resorption of nutrients from senescing tissues. Thus, the final chemical composition of plant litter that forms the substrate of decomposition is a combined product of presenescence physiological processes through the production and resorption of metabolites. The changes in quantity, composition, and localization of the molecular construct of the litter could enhance or hinder tissue decomposition and soil nutrient cycling by altering the recalcitrance of the lignocellulose matrix, the composition of microbial communities, and the activity of microbial exo-enzymes via various complexation reactions. Also, the climate-induced changes in the molecular composition of litter could differentially influence litter decomposition and soil nutrient cycling. Compared with temperate ecosystems, the indirect effects of climate on litter decomposition in the tropics are not well understood, which underscores the need to conduct additional studies in tropical biomes. We also emphasize the need to focus on how climatic stress affects the root chemistry as roots contribute significantly to biogeochemical cycling, and on utilizing more robust analytical approaches to capture the molecular composition of tissue matrix that fuel microbial metabolism.
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Affiliation(s)
- Vidya Suseela
- Department of Plant & Environmental Sciences, Clemson University, Clemson, SC, USA
| | - Nishanth Tharayil
- Department of Plant & Environmental Sciences, Clemson University, Clemson, SC, USA
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Nikalje GC, Srivastava AK, Sablok G, Pandey GK, Nikam TD, Suprasanna P. Identification and validation of reference genes for quantitative real-time PCR under salt stress in a halophyte, Sesuvium portulacastrum. ACTA ACUST UNITED AC 2018. [DOI: 10.1016/j.plgene.2017.11.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Abdel Latef AAH, Srivastava AK, Saber H, Alwaleed EA, Tran LSP. Sargassum muticum and Jania rubens regulate amino acid metabolism to improve growth and alleviate salinity in chickpea. Sci Rep 2017. [PMID: 28874670 DOI: 10.1007/s00344-018-9906-8] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/01/2023] Open
Abstract
The present study evaluates the potential of Sar gassum muticum (Sar) and Jan ia rubens (Jan) seaweeds for enhancing growth and mitigating soil-salinity in chickpea (Cicer arietinum L.). Under control conditions, Sar and Jan extracts improved chickpea growth which was attributed to their potential for increasing photosynthetic pigments, K+ and amino acids, particularly proline, in comparison with water-sprayed control. Upon stress imposition, chickpea growth was reduced in NaCl concentration-dependent manner, and principal component analysis (PCA) revealed Na+ accumulation and oxidative damage as major determinants of sensitivity at high salinity. Furthermore, amino acid quantification indicated activation/deactivation of overall metabolism in roots/shoots, as an adaptive strategy, for maintaining plant growth under salt stress. Sar and Jan extract supplementations provided stress amelioration, and PCA confirmed that improved growth parameters at high salinity were associated with enhanced activities of superoxide dismutase and peroxidase. Besides, four key amino acids, including serine, threonine, proline and aspartic acids, were identified from roots which maximally contribute to Sar- and Jan-mediated stress amelioration. Sar showed higher effectiveness than Jan under both control and salt stress conditions. Our findings highlight "bio-stimulant" properties of two seaweeds and provide mechanistic insight into their salt-ameliorating action which is relevant for both basic and applied research.
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Affiliation(s)
- Arafat Abdel Hamed Abdel Latef
- Botany Department, Faculty of Science, South Valley University, 83523, Qena, Egypt.
- Biology Department, College of Applied Medical Science, Turabah Branch 21955, Taif University, Taif, Saudi Arabia.
| | - Ashish Kumar Srivastava
- Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Mumbai, 400085, India
| | - Hani Saber
- Botany Department, Faculty of Science, South Valley University, 83523, Qena, Egypt
| | - Eman A Alwaleed
- Botany Department, Faculty of Science, South Valley University, 83523, Qena, Egypt
| | - Lam-Son Phan Tran
- Institute of Research and Development, Duy Tan University, 03 Quang Trung, Da Nang, Vietnam.
- Signaling Pathway Research Unit, RIKEN Center for Sustainable Resource Science, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, 230-0045, Japan.
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Sargassum muticum and Jania rubens regulate amino acid metabolism to improve growth and alleviate salinity in chickpea. Sci Rep 2017; 7:10537. [PMID: 28874670 PMCID: PMC5585251 DOI: 10.1038/s41598-017-07692-w] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Accepted: 07/03/2017] [Indexed: 01/24/2023] Open
Abstract
The present study evaluates the potential of Sargassum muticum (Sar) and Jania rubens (Jan) seaweeds for enhancing growth and mitigating soil-salinity in chickpea (Cicer arietinum L.). Under control conditions, Sar and Jan extracts improved chickpea growth which was attributed to their potential for increasing photosynthetic pigments, K+ and amino acids, particularly proline, in comparison with water-sprayed control. Upon stress imposition, chickpea growth was reduced in NaCl concentration-dependent manner, and principal component analysis (PCA) revealed Na+ accumulation and oxidative damage as major determinants of sensitivity at high salinity. Furthermore, amino acid quantification indicated activation/deactivation of overall metabolism in roots/shoots, as an adaptive strategy, for maintaining plant growth under salt stress. Sar and Jan extract supplementations provided stress amelioration, and PCA confirmed that improved growth parameters at high salinity were associated with enhanced activities of superoxide dismutase and peroxidase. Besides, four key amino acids, including serine, threonine, proline and aspartic acids, were identified from roots which maximally contribute to Sar- and Jan-mediated stress amelioration. Sar showed higher effectiveness than Jan under both control and salt stress conditions. Our findings highlight “bio-stimulant” properties of two seaweeds and provide mechanistic insight into their salt-ameliorating action which is relevant for both basic and applied research.
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48
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Sardans J, Grau O, Chen HYH, Janssens IA, Ciais P, Piao S, Peñuelas J. Changes in nutrient concentrations of leaves and roots in response to global change factors. GLOBAL CHANGE BIOLOGY 2017; 23:3849-3856. [PMID: 28407324 DOI: 10.1111/gcb.13721] [Citation(s) in RCA: 80] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Revised: 03/21/2017] [Accepted: 04/05/2017] [Indexed: 05/22/2023]
Abstract
Global change impacts on biogeochemical cycles have been widely studied, but our understanding of whether the responses of plant elemental composition to global change drivers differ between above- and belowground plant organs remains incomplete. We conducted a meta-analysis of 201 reports including 1,687 observations of studies that have analyzed simultaneously N and P concentrations changes in leaves and roots in the same plants in response to drought, elevated [CO2 ], and N and P fertilization around the world, and contrasted the results within those obtained with a general database (838 reports and 14,772 observations) that analyzed the changes in N and P concentrations in leaves and/or roots of plants submitted to the commented global change drivers. At global level, elevated [CO2 ] decreased N concentrations in leaves and roots and decreased N:P ratio in roots but no in leaves, but was not related to P concentration changes. However, the response differed among vegetation types. In temperate forests, elevated [CO2 ] was related with lower N concentrations in leaves but not in roots, whereas in crops, the contrary patterns were observed. Elevated [CO2 ] decreased N concentrations in leaves and roots in tundra plants, whereas not clear relationships were observed in temperate grasslands. However, when elevated [CO2 ] and N fertilization coincided, leaves had lower N concentrations, whereas root had higher N concentrations suggesting that more nutrients will be allocated to roots to improve uptake of the soil resources not directly provided by the global change drivers. N fertilization and drought increased foliar and root N concentrations while the effects on P concentrations were less clear. The changes in N and P allocation to leaves and root, especially those occurring in opposite direction between them have the capacity to differentially affect above- and belowground ecosystem functions, such as litter mineralization and above- and belowground food webs.
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Affiliation(s)
- Jordi Sardans
- CSIC, Global Ecology Unit CREAF-CEAB-UAB, Barcelona, Spain
- CREAF, Barcelona, Spain
| | - Oriol Grau
- CSIC, Global Ecology Unit CREAF-CEAB-UAB, Barcelona, Spain
- CREAF, Barcelona, Spain
| | - Han Y H Chen
- Faculty of Natural Resources Management, Lakehead University, Thunder Bay, ON, Canada
| | - Ivan A Janssens
- Research Group of Plant and Vegetation Ecology (PLECO), Department of Biology, University of Antwerp, Wilrijk, Belgium
| | - Philippe Ciais
- Laboratoire des Sciences du Climat et de l'Environnement, IPSL, Gif-sur-Yvette, France
| | - Shilong Piao
- Sino-French Institute for Earth System Science, College of Urban and Environmental Sciences, Peking University, Beijing, China
| | - Josep Peñuelas
- CSIC, Global Ecology Unit CREAF-CEAB-UAB, Barcelona, Spain
- CREAF, Barcelona, Spain
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Gargallo-Garriga A, Ayala-Roque M, Sardans J, Bartrons M, Granda V, Sigurdsson BD, Leblans NIW, Oravec M, Urban O, Janssens IA, Peñuelas J. Impact of Soil Warming on the Plant Metabolome of Icelandic Grasslands. Metabolites 2017; 7:E44. [PMID: 28832555 PMCID: PMC5618329 DOI: 10.3390/metabo7030044] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2017] [Revised: 08/10/2017] [Accepted: 08/18/2017] [Indexed: 11/16/2022] Open
Abstract
Climate change is stronger at high than at temperate and tropical latitudes. The natural geothermal conditions in southern Iceland provide an opportunity to study the impact of warming on plants, because of the geothermal bedrock channels that induce stable gradients of soil temperature. We studied two valleys, one where such gradients have been present for centuries (long-term treatment), and another where new gradients were created in 2008 after a shallow crustal earthquake (short-term treatment). We studied the impact of soil warming (0 to +15 °C) on the foliar metabolomes of two common plant species of high northern latitudes: Agrostis capillaris, a monocotyledon grass; and Ranunculus acris, a dicotyledonous herb, and evaluated the dependence of shifts in their metabolomes on the length of the warming treatment. The two species responded differently to warming, depending on the length of exposure. The grass metabolome clearly shifted at the site of long-term warming, but the herb metabolome did not. The main up-regulated compounds at the highest temperatures at the long-term site were saccharides and amino acids, both involved in heat-shock metabolic pathways. Moreover, some secondary metabolites, such as phenolic acids and terpenes, associated with a wide array of stresses, were also up-regulated. Most current climatic models predict an increase in annual average temperature between 2-8 °C over land masses in the Arctic towards the end of this century. The metabolomes of A. capillaris and R. acris shifted abruptly and nonlinearly to soil warming >5 °C above the control temperature for the coming decades. These results thus suggest that a slight warming increase may not imply substantial changes in plant function, but if the temperature rises more than 5 °C, warming may end up triggering metabolic pathways associated with heat stress in some plant species currently dominant in this region.
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Affiliation(s)
- Albert Gargallo-Garriga
- Consejo Superior de Investigaciones Científicas (CSIC), Global Ecology Unit CREAF-CSIC-UAB, 08193 Bellaterra, Spain.
- Ecological and Forestry Applications Research Centre, 08193 Cerdanyola del Vallès, Spain.
| | - Marta Ayala-Roque
- Consejo Superior de Investigaciones Científicas (CSIC), Global Ecology Unit CREAF-CSIC-UAB, 08193 Bellaterra, Spain.
- Ecological and Forestry Applications Research Centre, 08193 Cerdanyola del Vallès, Spain.
| | - Jordi Sardans
- Consejo Superior de Investigaciones Científicas (CSIC), Global Ecology Unit CREAF-CSIC-UAB, 08193 Bellaterra, Spain.
- Ecological and Forestry Applications Research Centre, 08193 Cerdanyola del Vallès, Spain.
| | - Mireia Bartrons
- Consejo Superior de Investigaciones Científicas (CSIC), Global Ecology Unit CREAF-CSIC-UAB, 08193 Bellaterra, Spain.
- BETA Technological Centre (Tecnio), Aquatic Ecology Group, University of Vic-Central University of Catalonia, Vic, 08500 Barcelona, Spain.
| | - Victor Granda
- Consejo Superior de Investigaciones Científicas (CSIC), Global Ecology Unit CREAF-CSIC-UAB, 08193 Bellaterra, Spain.
- Ecological and Forestry Applications Research Centre, 08193 Cerdanyola del Vallès, Spain.
| | | | - Niki I W Leblans
- Agricultural University of Iceland, IS-311 Borgarnes, Iceland.
- Department of Biology, University of Antwerp, BE-2610 Antwerp, Belgium.
| | - Michal Oravec
- Global Change Research Institute, The Czech Academy of Sciences, Belidla 986/4a, CZ-60300 Brno, Czech Republic.
| | - Otmar Urban
- Global Change Research Institute, The Czech Academy of Sciences, Belidla 986/4a, CZ-60300 Brno, Czech Republic.
| | - Ivan A Janssens
- Department of Biology, University of Antwerp, BE-2610 Antwerp, Belgium.
| | - Josep Peñuelas
- Consejo Superior de Investigaciones Científicas (CSIC), Global Ecology Unit CREAF-CSIC-UAB, 08193 Bellaterra, Spain.
- Ecological and Forestry Applications Research Centre, 08193 Cerdanyola del Vallès, Spain.
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50
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Gargallo-Garriga A, Wright SJ, Sardans J, Pérez-Trujillo M, Oravec M, Večeřová K, Urban O, Fernández-Martínez M, Parella T, Peñuelas J. Long-term fertilization determines different metabolomic profiles and responses in saplings of three rainforest tree species with different adult canopy position. PLoS One 2017; 12:e0177030. [PMID: 28493911 PMCID: PMC5426662 DOI: 10.1371/journal.pone.0177030] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2016] [Accepted: 04/20/2017] [Indexed: 11/18/2022] Open
Abstract
BACKGROUND Tropical rainforests are frequently limited by soil nutrient availability. However, the response of the metabolic phenotypic plasticity of trees to an increase of soil nutrient availabilities is poorly understood. We expected that increases in the ability of a nutrient that limits some plant processes should be detected by corresponding changes in plant metabolome profile related to such processes. METHODOLOGY/PRINCIPAL FINDINGS We studied the foliar metabolome of saplings of three abundant tree species in a 15 year field NPK fertilization experiment in a Panamanian rainforest. The largest differences were among species and explained 75% of overall metabolome variation. The saplings of the large canopy species, Tetragastris panamensis, had the lowest concentrations of all identified amino acids and the highest concentrations of most identified secondary compounds. The saplings of the "mid canopy" species, Alseis blackiana, had the highest concentrations of amino acids coming from the biosynthesis pathways of glycerate-3P, oxaloacetate and α-ketoglutarate, and the saplings of the low canopy species, Heisteria concinna, had the highest concentrations of amino acids coming from the pyruvate synthesis pathways. CONCLUSIONS/SIGNIFICANCE The changes in metabolome provided strong evidence that different nutrients limit different species in different ways. With increasing P availability, the two canopy species shifted their metabolome towards larger investment in protection mechanisms, whereas with increasing N availability, the sub-canopy species increased its primary metabolism. The results highlighted the proportional distinct use of different nutrients by different species and the resulting different metabolome profiles in this high diversity community are consistent with the ecological niche theory.
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Affiliation(s)
- Albert Gargallo-Garriga
- CSIC, Global Ecology Unit CREAF-CEAB-CSIC-UAB, Cerdanyola del Vallès, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
- Servei de Ressonància Magnètica Nuclear, Faculty of Sciences and Biosciences, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Catalonia, Spain
| | - S. Joseph Wright
- Smithsonian Tropical Research Institute, Apartado, Balboa, Republic of Panama
| | - Jordi Sardans
- CSIC, Global Ecology Unit CREAF-CEAB-CSIC-UAB, Cerdanyola del Vallès, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
| | - Míriam Pérez-Trujillo
- Servei de Ressonància Magnètica Nuclear, Faculty of Sciences and Biosciences, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Catalonia, Spain
| | - Michal Oravec
- Global Change Research Institute, The Czech Academy of Sciences, Brno, Czech Republic
| | - Kristýna Večeřová
- Global Change Research Institute, The Czech Academy of Sciences, Brno, Czech Republic
| | - Otmar Urban
- Global Change Research Institute, The Czech Academy of Sciences, Brno, Czech Republic
| | - Marcos Fernández-Martínez
- CSIC, Global Ecology Unit CREAF-CEAB-CSIC-UAB, Cerdanyola del Vallès, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
| | - Teodor Parella
- Servei de Ressonància Magnètica Nuclear, Faculty of Sciences and Biosciences, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Catalonia, Spain
| | - Josep Peñuelas
- CSIC, Global Ecology Unit CREAF-CEAB-CSIC-UAB, Cerdanyola del Vallès, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
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