Long-term success of floodplain meadow restoration on species-poor grassland

Restoration of floodplain meadows remains a challenge, as many degraded sites suffer from seed limitation. The transfer of seed-containing plant material from species-rich donor sites is a widely used method to restore semi-natural grasslands. However, most studies on the success of such restoration projects comprise limited time frames. As factors determining restoration success may only become evident after many years, long-term observations are crucial. We re-investigated 20 restored grassland sites in the floodplain of the Northern Upper Rhine 13–16 years after plant material transfer with different soil preparation treatments. To this end, we carried out vegetation surveys on 254 permanent plots and studied the potential influence of soil preparation, soil nutrients, and hydrology on plant species composition, diversity, and transfer of target species. Since sustainable agricultural use is important to ensure the long-term stability of restored semi-natural grasslands, we further investigated biomass productivity and feeding value. While most target species increased in frequency or remained stable over time, we found no positive long-term effect of soil preparation on vegetation development and target species establishment. Instead, increased biomass yield and flooding frequency led to reduced restoration success, while higher soil C/N ratios had a positive effect. Overall, restoration measures did not affect the agricultural value of the restored grasslands, which had higher dry matter biomass yields compared with the donor sites. Our results indicate that the positive effect of soil preparation on the number and cover of target species, which is regularly reported in short-term studies, diminishes over time, and other factors such as site conditions become increasingly important. Furthermore, additional plant material transfer or manual seeding may be necessary to support target species establishment. Concerning agricultural usability, the integration of restored floodplain meadows in farming systems is possible and can ensure long-term management and thus stability of these ecosystems. Our study shows that long-term monitoring of restoration projects is necessary, as factors determining restoration success may only become evident in the long-term.

Filling the gap in distribution ranges and conservation status in Ctenomys (Rodentia: Ctenomyidae)

South American subterranean rodents of the genus Ctenomys (Rodentia, Ctenomyidae, tuco-tuco) are one of the most diverse genera among mammals. Recently described species, new taxonomic revisions, and new distribution range delimitation made the revision of distribution areas and conservation status of these mammals mandatory. Implementing the first part of the DAMA protocol (document, assess, monitor, act), here we compile updated sets of species distribution range maps and use these and the number of collection localities to assess the conservation status of ctenomyids. We integrate potential for conservation in protected areas, and levels of habitat transformation to revise previous conservation status assessments and propose the first assessment for all Data Deficient or not evaluated species of tuco-tucos. Our results indicate that 53 (78%) of these species are threatened and that 47 (69%) have little or no overlap with protected areas, emphasizing the urgent need to conduct conservation efforts. Here, 18 of 22 species previously classified as Data Deficient resulted in them being put in an at-risk category (VU, EN, CR). In addition, nine species that have not been previously evaluated were classified as threatened, with these two groups comprising more than 47% of the known species. These results posit that the Ctenomyidae are the rodent family with the greatest number of species at risk of extinction. Finally, a total of 33 (49%) species have been reported from three or fewer localities; all considered threatened through the approach implemented in this study. These geographically restricted taxa should be given more attention in conservation programs since the richness of this genus relies on the survival of such species.

Environmental DNA metabarcoding reveals the impact of different land use on multitrophic biodiversity in riverine systems

Human-induced changes in land use drive an alarming decline in river biodiversity and related ecosystem services worldwide. However, how different land use shapes aquatic multitrophic communities is still not well understood. Here, we used the biodiversity dataset from bacteria to fish captured by the environmental DNA (eDNA) approach in the four riverine systems with spatially different land use (i.e., Slightly disturbed group, Upstream disturbed group, Downstream disturbed group, and Strongly disturbed group) to reveal the changes in multitrophic biodiversity in relation to human land use. Firstly, our data showed that spatially different land use determined the pollutant loads of the riverine systems, most pollutants (e.g., TN and NH₃-N) had significant differences among the four riverine systems. Secondly, taxonomic α diversity across multitrophic levels did not necessarily change significantly, yet the change in community structure can be considered as a more sensitive indicator to reflect different land use, because different land use shaped the unique structure of multitrophic communities, and the dissimilarity of community structure was closely associated with land use gradient (e.g., positive relationships in the Slightly disturbed group, negative relationships in the Strongly disturbed group). Thirdly, different land use induced the shifts of key taxa, resulting in the variation of community structure and the change of co-occurrence network. Overall, these findings suggest that spatially different land use plays a critical role in shaping aquatic multitrophic communities, and an in-depth understanding of the interdependences between biodiversity and land use is a critical prerequisite for formulating river management strategies.

The role of land use change in affecting ecosystem services and the ecological security pattern of the Hexi Regions, Northwest China

The land use and land cover change (LUCC) associated with climate change and human activities is supposed to exert a significant effect on ecosystem functions in arid inland regions. However, the role of LUCC in shaping the spatio-temporal patterns of ecosystem services and ecological security remain unclear, especially under different future LUCC scenarios. Here, we evaluated dynamic changes of ecosystem services and ecological security pattern (ESP) in the Hexi Regions based on LUCC and other environment variables by integrating morphological spatial pattern analysis (MSPA), entropy weight method and circuit theory. Our result showed that the LUCC was generally stable from 1980 to 2050. Compare to 2020, the land conversion under natural growth (NG), ecological protection (EP) and urban development (UD) scenarios in 2050 has changed by 10.30 %, 10.10 %, and 10.31 %, respectively. The forest, medium-cover grassland and water increased in the EP scenario, and construction land and cropland greatly expanded in the other two scenarios. Ecosystem services grew larger in the EP scenario by 2050 in comparison with the NG and UD scenarios. The ESP in the Hexi Regions has obvious spatial differences during 1980-2050. The larger ecological sources and less resistance corridors were mainly distributed in the central and eastern of the Hexi Regions with high ecosystem services. Conversely, fragmented ecological sources and larger resistance corridors were mostly located in the western regions blocked by sandy land, bare land or mountains. Compared to 2020, the area of ecological sources and pinch points under the EP scenario in 2050 increased by 4.10 × 10³ km² and 0.31 × 10³ km², respectively. The number of ecological corridors reduced while the length and resistance increased apart from the EP scenario. Our results highlighted the importance of ecological protection in shaping the LUCC, which further enhances the integrity of ecosystem and ecological security.

An Urgent Call to Integrate the Health Sector into the Post-2020 Global Biodiversity Framework

There is a rapidly closing window of opportunity to stop biodiversity loss and secure the resilience of all life on Earth. In December 2022, Parties to the United Nations (UN) Convention on Biological Diversity (CBD) will meet in Montreal, Canada, to finalize the language and terms of the Post-2020 Global Biodiversity Framework (Post-2020 GBF). The Post-2020 GBF aims to address the shortcomings of the previous Strategic Plan on Biodiversity 2011-2020, by introducing a Theory of Change, that states that biodiversity protection will only be successful if unprecedented, transformative changes are implemented effectively by Parties to the CBD. In this policy perspective, we explore the implications of the Theory of Change chosen to underpin the Post-2020 GBF, specifically that broad social transformation is an outcome that requires actors to be specified. We detail how the health sector is uniquely positioned to be an effective actor and ally in support of the implementation of the Post-2020 GBF. Specifically, we highlight how the core competencies and financial and human resources available in the health sector (including unique knowledge, skill sets, experiences, and established trust) provide a compelling, yet mostly untapped opportunity to help create and sustain the enabling conditions necessary to achieve the goals and targets of the framework. While by no means a panacea for the world's biodiversity problems, we posit that explicitly omitting the health sector from the Post-2020 GBF substantially weakens the global, collective effort to catalyze the transformative changes required to safeguard biodiversity.

Realizing the potential of restoration science

Restoration science is growing fast. The restoration of habitats is increasingly part of the discussion over how to tackle the challenges of climate change, biodiversity loss and rural development. With this increasing role and attendant visibility, restoration science has seen increasing controversy. Here I describe six aspects of robust restoration science that should be kept in mind to help realize its potential: do data-driven studies; focus on robust results; improve reproducibility; contextualize the results; give attention to economics; consider the wider goals of restoration. Realizing the potential of restoration science, via robust scientific studies, will provide society with the knowledge and tools to make better choices about which habitats to restore and where. This article is part of the theme issue 'Understanding forest landscape restoration: reinforcing scientific foundations for the UN Decade on Ecosystem Restoration'.

Fish and macroinvertebrate assemblages reveal extensive degradation of the world's rivers

Rivers suffer from multiple stressors acting simultaneously on their biota, but the consequences are poorly quantified at the global scale. We evaluated the biological condition of rivers globally, including the largest proportion of countries from the Global South published to date. We gathered macroinvertebrate- and fish-based assessments from 72,275 and 37,676 sites, respectively, from 64 study regions across six continents and 45 nations. Because assessments were based on differing methods, different systems were consolidated into a 3-class system: Good, Impaired, or Severely Impaired, following common guidelines. The proportion of sites in each class by study area was calculated and each region was assigned a Köppen-Geiger climate type, Human Footprint score (addressing landscape alterations), Human Development Index (HDI) score (addressing social welfare), % rivers with good ambient water quality, % protected freshwater key biodiversity areas; and % of forest area net change rate. We found that 50% of macroinvertebrate sites and 42% of fish sites were in Good condition, whereas 21% and 29% were Severely Impaired, respectively. The poorest biological conditions occurred in Arid and Equatorial climates and the best conditions occurred in Snow climates. Severely Impaired conditions were associated (Pearson correlation coefficient) with higher HDI scores, poorer physico-chemical water quality, and lower proportions of protected freshwater areas. Good biological conditions were associated with good water quality and increased forested areas. It is essential to implement statutory bioassessment programs in Asian, African, and South American countries, and continue them in Oceania, Europe, and North America. There is a need to invest in assessments based on fish, as there is less information globally and fish were strong indicators of degradation. Our study highlights a need to increase the extent and number of protected river catchments, preserve and restore natural forested areas in the catchments, treat wastewater discharges, and improve river connectivity.

From COVID-19 to Green Recovery with natural capital accounting

The COVID-19 pandemic and related social and economic emergencies induced massive public spending and increased global debt. Economic recovery is now an opportunity to rebuild natural capital alongside financial, physical, social and human capital, for long-term societal benefit. Yet, current decision-making is dominated by economic imperatives and information systems that do not consider society's dependence on natural capital and the ecosystem services it provides. New international standards for natural capital accounting (NCA) are now available to integrate environmental information into government decision-making. By revealing the effects of policies that influence natural capital, NCA supports identification, implementation and monitoring of Green Recovery pathways, including where environment and economy are most positively interlinked.

Uncovering ecological regime shifts in the Sea of Marmara and reconsidering management strategies

Ecosystem regime shifts can alter ecosystem services, affect human well-being, and trigger policy conflicts due to economic losses and reductions in societal and environmental benefits. Intensive anthropogenic activities make the Sea of Marmara ecosystem suffer from nearly all existing available types of ecosystem pressures such as biological degradation, exposure to hydrological processes, nutrient and organic matter enrichment, plastic pollution, ocean warming, resulting in deterioration of habitats. In this study, using an integrated ecosystem assessment, we investigated for the first time the historical development and ecosystem state of the Sea of Marmara. Multivariate analyses were applied to the most comprehensive and unique long-term data sets of 9 biotic and 15 abiotic variables for ecosystem state and drivers respectively, from 1986 to 2020. Observed changes were confirmed by detecting shifts in the datasets. The Sea of Marmara ecosystem was classified into three regimes: i) an early initial state regime under the top-down control of predatory medium pelagic fish and fisheries exploitation until mid-1990s, ii) a transitional regime between mid-1990s and mid-2010s as from ecosystem restructuring, and iii) an alternate state late regime with prevailing impacts of climate change from mid-2010s until 2020. During the 20 years transitional regime, three different phases were also characterized; i) the 1st phase between mid-1990s and early 2000s with its gradual change in ecosystem state from a decrease in predators and significant shift in physical drivers of the ecosystem, ii) the 2nd phase between 2000 and mid-2000s with a strong shift in ecosystem state, an ongoing increase in climate indices and fishing mortality, and a gradual decrease in water quality; and iii) the 3rd phase between mid-2000s and mid-2010s with the reorganization of the ecosystem dominated by small pelagic fish and ameliorated water quality. During late regime, we observed that most of the biotic variables, mainly fish biomass, and climate variables did not return to their initial state despite the improvement in some abiotic variables such as water quality. We identify these observed changes in the SoM ecosystem as a non-linear regime shift. Finally, we also developed concrete suggestions for improved regional management.

The history of natural history and race: Decolonizing human dimensions of ecology

Natural history, loosely defined as the observational study of organisms in the habitats where they occur, is recognized at the roots of ecology. Although the centrality of natural history in ecology has shifted over time, natural history is currently in resurgence: many again consider it to be the foundation of ecological and evolutionary inquiry and advocate the value of organism-centered approaches to address contemporary ecological challenges. Educators identify natural history as the foundational entryway into the practice of ecology, for example in the Ecological Society of America's Four-Dimensional Ecology Education (4DEE) framework. A strong natural history foundation can help generate testable hypotheses to refine mechanistic understanding of the drivers regulating species distributions and abundances and to inform restoration and conservation efforts. Given the resurgence of natural history as the foundation for ecological knowledge and practice, it is important to recognize that natural history has a long history of racism that has impacted ecological thought and priorities. This history shapes not only who conducts ecological science but also foundational ecological concepts. For example, natural history's emphasis on pristine nature untouched by humans disregards or appropriates stewardship and knowledge of most of the world's population. Because of the legacy of chattel slavery, this exclusion is particularly strong for people of African descent. This exclusion narrows ecological inquiry, limits the capacity to find solutions to ecological problems, and risks interventions that perpetuate the relation between eugenics, ecological knowledge, and natural systems. If ecology is to become an inclusive, responsive, and resilient discipline, this knowledge gap must be addressed. We here present the colonial and racist underpinnings of natural history and offer strategies to expand inclusion in the study of nature. Natural history was steeped in racism, providing a hierarchy of cultures and a taxonomy of races. Complementing growing interest in traditional and Indigenous ecological knowledge, we focus on Black ecological knowledge, for example in the study of "maroon ecologies." Addressing the racist history of natural history is necessary for removing structural and racist barriers to diverse participation and expanding ecological knowledge bases in service of better and more just science.

Temporal Monitoring of the Floreana Island Galapagos Giant Tortoise Captive Breeding Program

Captive breeding programs benefit from genetic analyses that identify relatedness between individuals, assign parentage to offspring, and track levels of genetic diversity. Monitoring these parameters across breeding cycles is critical to the success of a captive breeding program as it allows conservation managers to iteratively evaluate and adjust program structure. However, in practice, genetic tracking of breeding outcomes is rarely conducted. Here, we examined the first three offspring cohorts (2017-2020) of the genetically informed captive breeding program for the Floreana Island Galapagos giant tortoise, Chelonoidis niger. This captive breeding program is unique as the Floreana tortoise has been extinct since the 1800s, but its genome persists, in part, in the form of living hybrids with the extant Volcano Wolf tortoise, C. becki. Breeding over the study period took place at the Galapagos National Park Directorate breeding facility in four corrals, each containing three females and two males. Using 17 microsatellite markers, we were able to assign parentage to 94 of the 98 offspring produced over the study period. We observe that despite the addition of more founders since the pilot breeding program, the effective population size remains low, and changes to the arrangements of breeding corrals may be necessary to encourage more equal reproductive output from the males. This study demonstrates the value of hybrids for species restoration and the importance of continually reassessing the outcomes of captive breeding.

Agriculture and food security under a changing climate: An underestimated challenge

Pathways to eradicate global hunger while bending the curve of biodiversity loss unanimously suggest changing to less energy-rich diets, closing yield gaps through agroecological principles, adopting modern breeding technologies to foster stress resilience and yields, as well as minimizing harvest losses and food waste. Against the background of a brief history of global agriculture, we review the available evidence on how the global food system might look given a global temperature increase by 3°. We show that a moderate gain in the area suitable for agriculture is confronted with substantial yield losses through strains on crop physiology, multitrophic interactions, and more frequent extreme events. Self-amplifying feedback are unresolved and might lead to further losses. In light of these uncertainties, we see that complexity is underestimated and more systemic research is needed. Efficiency gains in agriculture, albeit indispensable, will not be enough to achieve food security under severe climate change.

Connection is key when there's no planet B: The need to innovate environmental science communication with transdisciplinary approaches

As anthropogenic damage to the environment continues worldwide, effective science communication has never been more important. Despite this there are numerous barriers between traditional science communication (e.g. journal articles to news media) and the goal of encouraging more sustainable behaviours. Connections between public groups, science communicators and the environment, are all key to overcome barriers in intergroup communication. It is vital science communication adapts with transdisciplinary approaches to become more effective in its purpose. As such training of environmental science communicators must change. This endeavour will be supported by the enrichment of academic institutions through becoming more active in expediting cooperation between STEM (science, technology, engineering and maths) and HASS (humanities, arts and social science) disciplines. Modern dissemination of misinformation must be tackled with holistic approaches to bridge outgroups and enable the formation of trust.

Coextinctions dominate future vertebrate losses from climate and land use change

Although theory identifies coextinctions as a main driver of biodiversity loss, their role at the planetary scale has yet to be estimated. We subjected a global model of interconnected terrestrial vertebrate food webs to future (2020-2100) climate and land-use changes. We predict a 17.6% (± 0.16% SE) average reduction of local vertebrate diversity globally by 2100, with coextinctions increasing the effect of primary extinctions by 184.2% (± 10.9% SE) on average under an intermediate emissions scenario. Communities will lose up to a half of ecological interactions, thus reducing trophic complexity, network connectance, and community resilience. The model reveals that the extreme toll of global change for vertebrate diversity might be of secondary importance compared to the damages to ecological network structure.

Status and Trends in the Rate of Introduction of Marine Non-Indigenous Species in European Seas

Invasive alien species are a major worldwide driver of biodiversity change. The current study lists verified records of non-indigenous species (NIS) in European marine waters until 2020, with the purpose of establishing a baseline, assessing trends, and discussing appropriate threshold values for good environmental status (GES) according to the relevant European legislation. All NIS records were verified by national experts and trends are presented in six-year assessment periods from 1970 to 2020 according to the European Union Marine Strategy Framework Directive. Altogether, 874 NIS have been introduced to European marine waters until 2020 with the Mediterranean Sea and North-East Atlantic Ocean hosting most of the introductions. Overall, the number of new introductions has steadily increased since 2000. The annual rate of new introductions reached 21 new NIS in European seas within the last six-year assessment period (2012–2017). This increase is likely due to increased human activities and research efforts that have intensified during the early 21st century within European Seas. As Europe seas are not environmentally, nor geographically homogenous, the setting of threshold values for assessing GES requires regional expertise. Further, once management measures are operational, pathway-specific threshold values would enable assessing the effectiveness of such measures.

Madagascar’s extraordinary biodiversity: Threats and opportunities

Madagascar’s unique biota is heavily affected by human activity and is under intense threat. Here, we review the current state of knowledge on the conservation status of Madagascar’s terrestrial and freshwater biodiversity by presenting data and analyses on documented and predicted species-level conservation statuses, the most prevalent and relevant threats, ex situ collections and programs, and the coverage and comprehensiveness of protected areas. The existing terrestrial protected area network in Madagascar covers 10.4% of its land area and includes at least part of the range of the majority of described native species of vertebrates with known distributions (97.1% of freshwater fishes, amphibians, reptiles, birds, and mammals combined) and plants (67.7%). The overall figures are higher for threatened species (97.7% of threatened vertebrates and 79.6% of threatened plants occurring within at least one protected area). International Union for Conservation of Nature (IUCN) Red List assessments and Bayesian neural network analyses for plants identify overexploitation of biological resources and unsustainable agriculture as the most prominent threats to biodiversity. We highlight five opportunities for action at multiple levels to ensure that conservation and ecological restoration objectives, programs, and activities take account of complex underlying and interacting factors and produce tangible benefits for the biodiversity and people of Madagascar.

Towards the fully automated monitoring of ecological communities

High-resolution monitoring is fundamental to understand ecosystems dynamics in an era of global change and biodiversity declines. While real-time and automated monitoring of abiotic components has been possible for some time, monitoring biotic components-for example, individual behaviours and traits, and species abundance and distribution-is far more challenging. Recent technological advancements offer potential solutions to achieve this through: (i) increasingly affordable high-throughput recording hardware, which can collect rich multidimensional data, and (ii) increasingly accessible artificial intelligence approaches, which can extract ecological knowledge from large datasets. However, automating the monitoring of facets of ecological communities via such technologies has primarily been achieved at low spatiotemporal resolutions within limited steps of the monitoring workflow. Here, we review existing technologies for data recording and processing that enable automated monitoring of ecological communities. We then present novel frameworks that combine such technologies, forming fully automated pipelines to detect, track, classify and count multiple species, and record behavioural and morphological traits, at resolutions which have previously been impossible to achieve. Based on these rapidly developing technologies, we illustrate a solution to one of the greatest challenges in ecology: the ability to rapidly generate high-resolution, multidimensional and standardised data across complex ecologies.

Indigenous insights on human-wildlife coexistence in southern India

As human-wildlife conflicts escalate worldwide, concepts such as tolerance and acceptance of wildlife are becoming increasingly important. Yet, contemporary conservation studies indicate a limited understanding of positive human-wildlife interactions, leading to potentially inaccurate representations of human-animal encounters. Failure to address these limitations contributes to the design and implementation of poor wildlife and landscape management plans and the dismissal of Indigenous ecological knowledge. We examined Indigenous perspectives on human-wildlife coexistence in India by drawing ethnographic evidence from Kattunayakans, a forest-dwelling Adivasi community living in the Wayanad Wildlife Sanctuary in Kerala. Through qualitative field study that involved interviews and transect walks inside the forests, we found that Kattunayakans displayed tolerance and acceptance of wild animals characterized as forms of deep coexistence that involves three central ideas: wild animals as rational conversing beings; wild animals as gods, teachers, and equals; and wild animals as relatives with shared origins practicing dharmam. We argue that understanding these adequately will support efforts to bring Kattunayakan perspectives into the management of India's forests and contribute to the resolution of the human-wildlife conflict more broadly.

Understanding Local Adaptation to Prepare Populations for Climate Change

Adaptation within species to local environments is widespread in nature. Better understanding this local adaptation is critical to conserving biodiversity. However, conservation practices can rely on species’ trait averages or can broadly assume homogeneity across the range to inform management. Recent methodological advances for studying local adaptation provide the opportunity to fine-tune efforts for managing and conserving species. The implementation of these advances will allow us to better identify populations at greatest risk of decline because of climate change, as well as highlighting possible strategies for improving the likelihood of population persistence amid climate change. In the present article, we review recent advances in the study of local adaptation and highlight ways these tools can be applied in conservation efforts. Cutting-edge tools are available to help better identify and characterize local adaptation. Indeed, increased incorporation of local adaptation in management decisions may help meet the imminent demands of managing species amid a rapidly changing world.

Tree species and genetic diversity increase productivity via functional diversity and trophic feedbacks

Addressing global biodiversity loss requires an expanded focus on multiple dimensions of biodiversity. While most studies have focused on the consequences of plant interspecific diversity, our mechanistic understanding of how genetic diversity within plant species affects plant productivity remains limited. Here, we use a tree species × genetic diversity experiment to disentangle the effects of species diversity and genetic diversity on tree productivity, and how they are related to tree functional diversity and trophic feedbacks. We found that tree species diversity increased tree productivity via increased tree functional diversity, reduced soil fungal diversity, and marginally reduced herbivory. The effects of tree genetic diversity on productivity via functional diversity and soil fungal diversity were negative in monocultures but positive in the mixture of the four tree species tested. Given the complexity of interactions between species and genetic diversity, tree functional diversity and trophic feedbacks on productivity, we suggest that both tree species and genetic diversity should be considered in afforestation.

Integrating deep-time palaeontology in conservation prioritisation

Halting biodiversity loss under growing anthropogenic pressure is arguably the greatest environmental challenge we face. Given that not all species are equally threatened and that resources are always limited, establishing robust prioritisation schemes is critical for implementing effective conservation actions. To this end, the International Union for Conservation of Nature (IUCN) Red List of Threatened Species has become a widely used source of information on species’ extinction risk. Various metrics have been proposed that combine IUCN status with different aspects of biodiversity to identify conservation priorities. However, current strategies do not take full advantage of palaeontological data, with conservation palaeobiology often focussing on the near-time fossil record (the last 2 million years). Here, we make a case for the value of the deep-time (over 2 million years ago), as it can offer tangible parallels with today’s biodiversity crisis and inform on the intrinsic traits that make species prone to extinction. As such, palaeontological data holds great predictive power, which could be harnessed to flag species likely to be threatened but that are currently too poorly known to be identified as such. Finally, we identify key IUCN-based prioritisation metrics and outline opportunities for integrating palaeontological data to validate their implementation. Although the human signal of the current extinction crisis makes direct comparisons with the geological past challenging, the deep-time fossil record has more to offer to conservation than is currently recognised.

Land use and soil characteristics affect soil organisms differently from above-ground assemblages

Background

Land-use is a major driver of changes in biodiversity worldwide, but studies have overwhelmingly focused on above-ground taxa: the effects on soil biodiversity are less well known, despite the importance of soil organisms in ecosystem functioning. We modelled data from a global biodiversity database to compare how the abundance of soil-dwelling and above-ground organisms responded to land use and soil properties.

Results

We found that land use affects overall abundance differently in soil and above-ground assemblages. The abundance of soil organisms was markedly lower in cropland and plantation habitats than in primary vegetation and pasture. Soil properties influenced the abundance of soil biota in ways that differed among land uses, suggesting they shape both abundance and its response to land use.

Conclusions

Our results caution against assuming models or indicators derived from above-ground data can apply to soil assemblages and highlight the potential value of incorporating soil properties into biodiversity models.

Supplementary Information

The online version contains supplementary material available at 10.1186/s12862-022-02089-4.

The direct drivers of recent global anthropogenic biodiversity loss

Effective policies to halt biodiversity loss require knowing which anthropogenic drivers are the most important direct causes. Whereas previous knowledge has been limited in scope and rigor, here we statistically synthesize empirical comparisons of recent driver impacts found through a wide-ranging review. We show that land/sea use change has been the dominant direct driver of recent biodiversity loss worldwide. Direct exploitation of natural resources ranks second and pollution third; climate change and invasive alien species have been significantly less important than the top two drivers. The oceans, where direct exploitation and climate change dominate, have a different driver hierarchy from land and fresh water. It also varies among types of biodiversity indicators. For example, climate change is a more important driver of community composition change than of changes in species populations. Stopping global biodiversity loss requires policies and actions to tackle all the major drivers and their interactions, not some of them in isolation.

The biospheric emergency calls for scientists to change tactics

Our current economic and political structures have an increasingly devastating impact on the Earth's climate and ecosystems: we are facing a biospheric emergency, with catastrophic consequences for both humans and the natural world on which we depend. Life scientists - including biologists, medical scientists, psychologists and public health experts - have had a crucial role in documenting the impacts of this emergency, but they have failed to drive governments to take action in order to prevent the situation from getting worse. Here we, as members of the movement Scientist Rebellion, call on life scientists to re-embrace advocacy and activism - which were once hallmarks of academia - in order to highlight the urgency and necessity of systemic change across our societies. We particularly emphasise the need for scientists to engage in nonviolent civil resistance, a form of public engagement which has proven to be highly effective in social struggles throughout history.

Recovery units under the Endangered Species Act should be used more widely

Recovering species is the main goal of the Endangered Species Act (ESA). In the face of limited conservation budgets, diverse tools are needed to efficiently recover species. Recovery units may be one such tool - designated portions of a species’ range that must be recovered individually before an entire species can be considered recovered. Recovery units allow for spatial flexibility in developing recovery goals and may be used in regulatory decisions such as ESA section 7 consultation. Despite the advantages, very little information exists on how recovery units have been developed and used. We mined available public data to determine the number and types of species for which recovery units have been designated; evaluated species and geographic characteristics associated with recovery unit designation; and examined how recovery units have been used in implementing the ESA, such as during consultation. We found 49 listed species had designated recovery units through December 2017, and that these species typically had relatively large ranges and were well-studied. We found taxonomic biases in recovery unit designation as well, with fish species being disproportionately likely to have recovery units and plants disproportionately less. These species were also more likely to have their recovery units considered and used in subsequent ESA implementation – a probability that decreased as time since unit designation passed. Improvements in recovery priority numbers among species with recovery units indicate that the theoretical benefits of this tool may have translated to improved status. These data indicate that recovery units could be applied to additional wide-ranging species to improve recovery under the ESA.

Managing host-parasite interactions in humans and wildlife in times of global change

Global change in the Anthropocene has modified the environment of almost any species on earth, be it through climate change, habitat modifications, pollution, human intervention in the form of mass drug administration (MDA), or vaccination. This can have far-reaching consequences on all organisational levels of life, including eco-physiological stress at the cell and organism level, individual fitness and behaviour, population viability, species interactions and biodiversity. Host-parasite interactions often require highly adapted strategies by the parasite to survive and reproduce within the host environment and ensure efficient transmission among hosts. Yet, our understanding of the system-level outcomes of the intricate interplay of within host survival and among host parasite spread is in its infancy. We shed light on how global change affects host-parasite interactions at different organisational levels and address challenges and opportunities to work towards better-informed management of parasite control. We argue that global change affects host-parasite interactions in wildlife inhabiting natural environments rather differently than in humans and invasive species that benefit from anthropogenic environments as habitat and more deliberate rather than erratic exposure to therapeutic drugs and other control efforts.

Population genomics of a predatory mammal reveals patterns of decline and impacts of exposure to toxic toads

Mammal declines across northern Australia are one of the major biodiversity loss events occurring globally. There has been no regional assessment of the implications of these species declines for genomic diversity. To address this, we conducted a species-wide assessment of genomic diversity in the northern quoll (Dasyurus hallucatus), an Endangered marsupial carnivore. We used next generation sequencing methods to genotype 10,191 single nucleotide polymorphisms (SNPs) in 352 individuals from across a 3220-km length of the continent, investigating patterns of population genomic structure and diversity, and identifying loci showing signals of putative selection. We found strong heterogeneity in the distribution of genomic diversity across the continent, characterized by (i) biogeographical barriers driving hierarchical population structure through long-term isolation, and (ii) severe reductions in diversity resulting from population declines, exacerbated by the spread of introduced toxic cane toads (Rhinella marina). These results warn of a large ongoing loss of genomic diversity and associated adaptive capacity as mammals decline across northern Australia. Encouragingly, populations of the northern quoll established on toad-free islands by translocations appear to have maintained most of the initial genomic diversity after 16 years. By mapping patterns of genomic diversity within and among populations, and investigating these patterns in the context of population declines, we can provide conservation managers with data critical to informed decision-making. This includes the identification of populations that are candidates for genetic management, the importance of remnant island and insurance/translocated populations for the conservation of genetic diversity, and the characterization of putative evolutionarily significant units.

Anthropogenic pollution discharges, hotspot pollutants and targeted strategies for urban and rural areas in the context of population migration: Numerical modeling of the Minjiang River basin

Unprecedented urbanization-induced population migration in China severely affects the scale and geographic distribution of anthropogenic pollutant discharge. Understanding how pollutant discharge patterns respond to population migration can help guide future efforts to maintain water sustainability. Here, based on a new calculation framework with 18 dynamic parameters designed for anthropogenic discharges, we finely tracked and visualized the effects of population migration on the spatial and temporal changes in anthropogenic discharge from 1980 to 2019 in the Minjiang River basin. The results indicate that the increasing effect of population migration on anthropogenic discharges peaked in 2002 and started to contribute to pollutant reduction from 2010 onward. The direct impact of population migration only contributes to the shift of anthropogenic discharges from rural to urban areas, while the migration bonus is the key factor leading to the reduction in anthropogenic discharges. Population migration is highly beneficial for chemical oxygen demand (COD) reduction, which has contributed to a shift from COD to NH₄⁺-N and total phosphorus (TP) as hotspot pollutants in the whole basin (NH₄⁺-N in urban areas and TP in rural areas). Moreover, pollution reduction resulting from the demographic bonus phenomenon has remained limited only to urban areas. Since approximately 2010, the per capita amount and total amount of anthropogenic pollutant discharges in rural areas have exceeded those in urban areas; in particular, the per capita COD and TP discharges in rural areas reached four times those in urban areas. This suggests that future pollution control strategies should give more attention to rural areas and focus on the differentiation and targeting of urban and rural areas.

Re-evaluating Coho salmon (Oncorhynchus kisutch) conservation units in Canada using genomic data

Conservation units (CUs) are important tools for supporting the implementation of standardized management practices for exploited species. Following the adoption of the Wild Salmon Policy in Canada, CUs were defined for Pacific salmon based on characteristics related to ecotype, life history and genetic variation using microsatellite markers as indirect measures of local adaptation. Genomic data sets have the potential to improve the definition of CUs by reducing variance around estimates of population genetic parameters, thereby increasing the power to detect more subtle patterns of population genetic structure and by providing an opportunity to incorporate adaptive information more directly with the identification of variants putatively under selection. We used one of the largest genomic data sets recently published for a nonmodel species, comprising 5662 individual Coho salmon (Oncorhynchus kisutch) from 149 sampling locations and a total of 24,542 high-quality SNPs obtained using genotyping-by-sequencing and mapped to the Coho salmon reference genome to (1) evaluate the current delineation of CUs for Coho in Canada and (2) compare patterns of population structure observed using neutral and outlier loci from genotype-environment association analyses to determine whether separate CUs that capture adaptive diversity are needed. Our results reflected CU boundaries on the whole, with the majority of sampling locations managed in the same CU clustering together within genetic groups. However, additional groups that are not currently represented by CUs were also uncovered. We observed considerable overlap in the genetic clusters identified using neutral or candidate loci, indicating a general congruence in patterns of genetic variation driven by local adaptation and gene flow in this species. Consequently, we suggest that the current CU boundaries for Coho salmon are largely well-suited for meeting the Canadian Wild Salmon Policy's objective of defining biologically distinct groups, but we highlight specific areas where CU boundaries may be refined.

Scientists' warning on population

Humanity must commit to transformative change on all levels in order to address the climate emergency and biodiversity collapse. In particular, stabilizing and ultimately reducing the human population size is necessary to ensure the long-term wellbeing of our species and other life on Earth. We show how this transition can be accomplished in an equitable framework that promotes human rights. Specifically, we issue a global appeal for women and men to have at most one child and call for policy-makers to implement population policies that improve education for girls and young women and ensure the availability of high-quality family-planning services.

A contemporary baseline of Madagascar's coral assemblages: Reefs with high coral diversity, abundance, and function associated with marine protected areas

Madagascar is a major hotspot of biodiversity in the Western Indian Ocean, but, as in many other regions, coral reefs surrounding the island confront large-scale disturbances and human-induced local stressors. Conservation actions have been implemented with encouraging results for fisheries, though their benefit on coral assemblages has never been rigorously addressed. In this context, we analyzed the multiscale spatial variation of the composition, generic richness, abundance, life history strategies, and cover of coral assemblages among 18 stations placed at three regions around the island. The potential influences of marine protected areas (MPAs), algal cover, substrate rugosity, herbivorous fish biomass, and geographic location were also analyzed. Our results highlight the marked spatial variability, with variation at either or both regional and local scales for all coral descriptors. The northeast coastal region of Masoala was characterized by the high abundance of coral colonies, most notably of the competitive Acropora and Pocillopora genera and stress-tolerant taxa at several stations. The southwest station of Salary Nord was distinguished by lower abundances, with depauperate populations of competitive taxa. On the northwest coast, Nosy-Be was characterized by higher diversity and abundance as well as by high coral cover (~42-70%) recorded at unfished stations. Results clearly underline the positive effects of MPAs on all but one of the coral descriptors, particularly at Nosy-Be where the highest contrast between fished and unfished stations was observed. Biomass of herbivorous fishes, crustose coralline algae cover, and substrate rugosity were also positively related to several coral descriptors. The occurrence of reefs with high diversity, abundance, and cover of corals, including the competitive Acropora, is a major finding of this study. Our results strongly support the implementation of locally managed marine areas with strong involvement by primary users, particularly to assist in management in countries with reduced logistic and human resources such as Madagascar.

More losses than gains during one century of plant biodiversity change in Germany

Long-term analyses of biodiversity data highlight a 'biodiversity conservation paradox': biological communities show substantial species turnover over the past century^1,2, but changes in species richness are marginal^1,3-5. Most studies, however, have focused only on the incidence of species, and have not considered changes in local abundance. Here we asked whether analysing changes in the cover of plant species could reveal previously unrecognized patterns of biodiversity change and provide insights into the underlying mechanisms. We compiled and analysed a dataset of 7,738 permanent and semi-permanent vegetation plots from Germany that were surveyed between 2 and 54 times from 1927 to 2020, in total comprising 1,794 species of vascular plants. We found that decrements in cover, averaged across all species and plots, occurred more often than increments; that the number of species that decreased in cover was higher than the number of species that increased; and that decrements were more equally distributed among losers than were gains among winners. Null model simulations confirmed that these trends do not emerge by chance, but are the consequence of species-specific negative effects of environmental changes. In the long run, these trends might result in substantial losses of species at both local and regional scales. Summarizing the changes by decade shows that the inequality in the mean change in species cover of losers and winners diverged as early as the 1960s. We conclude that changes in species cover in communities represent an important but understudied dimension of biodiversity change that should more routinely be considered in time-series analyses.

ReSurveyGermany: Vegetation-plot time-series over the past hundred years in Germany

Vegetation-plot resurvey data are a main source of information on terrestrial biodiversity change, with records reaching back more than one century. Although more and more data from re-sampled plots have been published, there is not yet a comprehensive open-access dataset available for analysis. Here, we compiled and harmonised vegetation-plot resurvey data from Germany covering almost 100 years. We show the distribution of the plot data in space, time and across habitat types of the European Nature Information System (EUNIS). In addition, we include metadata on geographic location, plot size and vegetation structure. The data allow temporal biodiversity change to be assessed at the community scale, reaching back further into the past than most comparable data yet available. They also enable tracking changes in the incidence and distribution of individual species across Germany. In summary, the data come at a level of detail that holds promise for broadening our understanding of the mechanisms and drivers behind plant diversity change over the last century.

Restoring the orangutan in a Whole- or Half-Earth context

Various global-scale proposals exist to reduce the loss of biological diversity. These include the Half-Earth and Whole-Earth visions that respectively seek to set aside half the planet for wildlife conservation or to diversify conservation practices fundamentally and change the economic systems that determine environmental harm. Here we assess these visions in the specific context of Bornean orangutans Pongo pygmaeus and their conservation. Using an expert-led process we explored three scenarios over a 10-year time frame: continuation of Current Conditions, a Half-Earth approach and a Whole-Earth approach. In addition, we examined a 100-year population recovery scenario assuming 0% offtake of Bornean orangutans. Current Conditions were predicted to result in a population c. 73% of its current size by 2032. Half-Earth was judged comparatively easy to achieve and predicted to result in an orangutan population of c. 87% of its current size by 2032. Whole-Earth was anticipated to lead to greater forest loss and ape killing, resulting in a prediction of c. 44% of the current orangutan population for 2032. Finally, under the recovery scenario, populations could be c. 148% of their current size by 2122. Although we acknowledge uncertainties in all of these predictions, we conclude that the Half-Earth and Whole-Earth visions operate along different timelines, with the implementation of Whole-Earth requiring too much time to benefit orangutans. None of the theorized proposals provided a complete solution, so drawing elements from each will be required. We provide recommendations for equitable outcomes.

Challenges of and opportunities for protecting European soil biodiversity

Soil biodiversity and related ecosystem functions are neglected in most biodiversity assessments and nature conservation actions. We examined how society, and particularly policy makers, have addressed these factors worldwide with a focus on Europe and explored the role of soils in nature conservation in Germany as an example. We reviewed past and current global and European policies, compared soil ecosystem functioning in- and outside protected areas, and examined the role of soils in nature conservation management via text analyses. Protection and conservation of soil biodiversity and soil ecosystem functioning have been insufficient. Soil-related policies are unenforceable and lack soil biodiversity conservation goals, focusing instead on other environmental objectives. We found no evidence of positive effects of current nature conservation measures in multiple soil ecosystem functions in Europe. In German conservation management, soils are considered only from a limited perspective (e.g., as physicochemical part of the environment and as habitat for aboveground organisms). By exploring policy, evidence, and management as it relates to soil ecosystems, we suggest an integrative perspective to move nature conservation toward targeting soil ecosystems directly (e.g., by setting baselines, monitoring soil threats, and establishing a soil indicator system).