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Huang L, Jiang L, Zhang Y, Yuan T, Sun Y, Liu C, Lei X, Yuan X, Lian J, Liu S, Huang H. Distribution patterns of reef-building corals in the Northwest Pacific and their environmental drivers. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174429. [PMID: 38960185 DOI: 10.1016/j.scitotenv.2024.174429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 06/27/2024] [Accepted: 06/30/2024] [Indexed: 07/05/2024]
Abstract
Understanding species distribution and the related driving processes is a fundamental issue in ecology. However, incomplete data on reef-building corals in the ecoregions of the South China Sea have hindered a comprehensive understanding of coral distribution patterns and their ecological drivers in the Northwest Pacific (NWP). This study investigated the coral species diversity and distribution patterns in the NWP by collecting species presence/absence data from the South China Sea and compiling an extensive species distribution database for the region, and explored their major environmental drivers. Our NWP coral database included 612 recorded coral species across 15 ecoregions. Of these, 536 coral species were recorded in the South China Sea Oceanic Islands after compilation, confirming the extraordinary coral species diversity in this ecoregion. Coral alpha diversity was found to decrease with increasing latitude in the whole NWP, while the influence of the Kuroshio Current on environmental conditions in its path results in a slower decline in species richness with latitude compared to regions within the South China Sea. Beta-diversity decomposition revealed that nestedness patterns mainly occurred between low and high latitude ecoregions, while communities within similar latitudes exhibited a turnover component, particularly pronounced at high latitudes. The impact of environmental factors on coral assemblage structure outweighed the effects of spatial distance. Temperature, especially winter temperature, and light intensity strongly influenced alpha diversity and beta diversity's nestedness component. Additionally, turbidity and winter temperature variations at high latitudes contributed to the turnover pattern observed among communities in the NWP. These findings elucidate the assembly processes and major environmental drivers shaping different coral communities in the NWP, highlighting the significant role of specific environmental filtering in coral distribution patterns and providing valuable insights for coral species conservation efforts.
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Affiliation(s)
- Lintao Huang
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lei Jiang
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Yuyang Zhang
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Tao Yuan
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Youfang Sun
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Chengyue Liu
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Xinming Lei
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China
| | - Xiangcheng Yuan
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China
| | - Jiansheng Lian
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Sheng Liu
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China
| | - Hui Huang
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China; CAS-HKUST Sanya Joint Laboratory of Marine Science Research, Key Laboratory of Tropical Marine Biotechnology of Hainan Province, Sanya 572000, China; Sanya National Marine Ecosystem Research Station, Tropical Marine Biological Research Station in Hainan, Chinese Academy of Sciences, Sanya 572000, China.
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Miura O, Takisawa S. Biogeography of larval trematodes in the freshwater snail, Semisulcospira libertina: a comparison of the morphological and molecular approaches. Parasitol Int 2024; 102:102924. [PMID: 39019105 DOI: 10.1016/j.parint.2024.102924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Revised: 06/30/2024] [Accepted: 07/14/2024] [Indexed: 07/19/2024]
Abstract
While biogeographic patterns of free-living organisms are well documented, the biogeography of parasitic fauna remains largely unclear. Due to morphological similarities, parasites are often difficult to identify without the aid of molecular genetics, further complicating the interpretation of their biogeographic patterns. We investigated trematode parasites infecting the East Asian freshwater snail Semisulcospira libertina to understand their biogeography and to evaluate how molecular approaches influence the interpretation of biogeographic patterns of the trematode fauna. We identified 46 genetically delimited species from 19 morphologically distinguishable trematodes infecting S. libertina and found that their species richness was negatively correlated to latitude. We also found that potential definitive host (fishes) richness and host body size were positively correlated with trematode species richness, suggesting that host attributes are essential factors shaping the biogeographic pattern in trematodes. These trends were observed irrespective of species identification methods, demonstrating that classical morphological identification can also effectively identify the latitudinal gradient pattern in trematodes. We further detected the distance decay of similarity in trematode communities, although this trend was only detectable in the biogeographic dataset based on molecular identification. Our study showed that morphological identification sufficiently reflects the latitudinal richness gradient while molecular identification is essential to estimate accurate local species richness and increase the resolution of the large-scale pattern of population similarities in the trematode communities.
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Affiliation(s)
- Osamu Miura
- Faculty of Agriculture and Marine Science, Kochi University, 200 Monobe, Nankoku, Kochi 783-8502, Japan.
| | - Shu Takisawa
- Faculty of Agriculture and Marine Science, Kochi University, 200 Monobe, Nankoku, Kochi 783-8502, Japan
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Pan T, Zhang C, Orozco Terwengel P, Wang H, Ding L, Yang L, Hu C, Li W, Zhou W, Wu X, Zhang B. Comparative phylogeography reveals dissimilar genetic differentiation patterns in two sympatric amphibian species. Integr Zool 2024; 19:863-886. [PMID: 37880913 DOI: 10.1111/1749-4877.12764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2023]
Abstract
Global climate change is expected to have a profound effect on species distribution. Due to the temperature constraints, some narrow niche species could shift their narrow range to higher altitudes or latitudes. In this study, we explored the correlation between species traits, genetic structure, and geographical range size. More specifically, we analyzed how these variables are affected by differences in fundamental niche breadth or dispersal ability in the members of two sympatrically distributed stream-dwelling amphibian species (frog, Quasipaa yei; salamander, Pachyhynobius shangchengensis), in Dabie Mountains, East China. Both species showed relatively high genetic diversity in most geographical populations and similar genetic diversity patterns (JTX, low; BYM, high) correlation with habitat changes and population demography. Multiple clustering analyses were used to disclose differentiation among the geographical populations of these two amphibian species. Q. yei disclosed the relatively shallow genetic differentiation, while P. shangchengensis showed an opposite pattern. Under different historical climatic conditions, all ecological niche modeling disclosed a larger suitable habitat area for Q. yei than for P. shangchengensis; these results indicated a wider environment tolerance or wider niche width of Q. yei than P. shangchengensis. Our findings suggest that the synergistic effects of environmental niche variation and dispersal ability may help shape genetic structure across geographical topology, particularly for species with extremely narrow distribution.
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Affiliation(s)
- Tao Pan
- School of Life Sciences, Anhui University, Hefei, Anhui, China
- Anhui Province Key Laboratory for Conservation and Exploitation of Biological Resource, College of Life Sciences, Anhui Normal University, Wuhu, Anhui, China
| | - Caiwen Zhang
- School of Life Sciences, Anhui University, Hefei, Anhui, China
| | | | - Hui Wang
- College of Food and Bioengineering, Bengbu University, Bengbu, China
| | - Ling Ding
- School of Life Sciences, Anhui University, Hefei, Anhui, China
| | - Liuyang Yang
- Anhui Province Key Laboratory for Conservation and Exploitation of Biological Resource, College of Life Sciences, Anhui Normal University, Wuhu, Anhui, China
| | - Chaochao Hu
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing, Jiangsu, China
| | - Wengang Li
- Anhui Province Key Laboratory for Conservation and Exploitation of Biological Resource, College of Life Sciences, Anhui Normal University, Wuhu, Anhui, China
| | - Wenliang Zhou
- School of Life Sciences, Anhui University, Hefei, Anhui, China
| | - Xiaobing Wu
- Anhui Province Key Laboratory for Conservation and Exploitation of Biological Resource, College of Life Sciences, Anhui Normal University, Wuhu, Anhui, China
| | - Baowei Zhang
- School of Life Sciences, Anhui University, Hefei, Anhui, China
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Liao N, Pan L, Zhao H, Yang S, Qin X, Huang J, Li X, Dong K, Shi X, Hou Q, Chen Q, Wang P, Jiang G, Li N. Species pool and soil properties in mangrove habitats influence the species-immigration process of diazotrophic communities across southern China. mSystems 2024; 9:e0030724. [PMID: 38980055 PMCID: PMC11334429 DOI: 10.1128/msystems.00307-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Accepted: 06/15/2024] [Indexed: 07/10/2024] Open
Abstract
Microbial immigration is an ecological process in natural environments; however, the ecological trade-off mechanisms that govern the balance between species extinction and migration are still lacking. In this study, we investigated the mechanisms underlying the migration of diazotrophic communities from soil to leaves across six natural mangrove habitats in southern China. The results showed that the diazotrophic alpha and beta diversity exhibited significant regional and locational variations. The diazotrophic species pool gradually increased from the leaves to nonrhizosphere soil at each site, exhibiting a vertical distribution pattern. Mantel test analyses suggested that climate factors, particularly mean annual temperature, significantly influenced the structure of the diazotrophic community. The diazotrophic community assembly was mainly governed by dispersal limitation in soil and root samples, whereas dispersal limitation and ecological drift were dominant in leaves. Partial least squares path modeling revealed that the species pool and soil properties, particularly the oxidation-reduction potential and pH, were closely linked to the species-immigration ratio of diazotrophic communities. Our study provides novel insights for understanding the ecological trait diversity patterns and spread pathways of functional microbial communities between below- and aboveground habitats in natural ecosystems.IMPORTANCEEnvironmental selection plays key roles in microbial transmission. In this study, we have provided a comprehensive framework to elucidate the driving patterns of the ecological trade-offs in diazotrophic communities across large-scale mangrove habitats. Our research revealed that Bradyrhizobium japonicum, Marinobacterium lutimaris, and Agrobacterium tumefaciens were more abundant in root-associated soil than in leaves by internal and external pathways. The nonrhizospheric and rhizospheric soil samples harbored the most core amplicon sequence variants, indicating that these dominant diazotrophs could adapt to broader ecological niches. Correlation analysis indicated that the diversities of the diazotrophic community were regulated by biotic and abiotic factors. Furthermore, this study found a lower species immigration ratio in the soil than in the leaves. Both species pool and soil properties regulate the species-immigration mechanisms of the diazotrophic community. These results suggest that substantial species immigration is a widespread ecological process, leading to alterations in local community diversity across diverse host environments.
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Affiliation(s)
- Nengjian Liao
- Laboratory for Coastal Ocean Variation and Disaster Prediction, College of Ocean and Meteorology, Guangdong Ocean University, Zhanjiang, China
- Key Laboratory of Climate, Resources and Environment in Continental Shelf Sea and Deep Sea of Department of Education of Guangdong Province, Guangdong Ocean University, Zhanjiang, China
- College of Environmental Science and Engineering, Guilin University of Technology, Guilin, China
| | - Lianghao Pan
- Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Academy of Marine Sciences (Guangxi Mangrove Research Center), Guangxi Academy of Sciences, Beihai, China
| | - Huaxian Zhao
- Key Laboratory of Environment Change and Resources Use in Beibu Gulf, Ministry of Education (Nanning Normal University), Nanning, China
| | - Shu Yang
- Key Laboratory of Environment Change and Resources Use in Beibu Gulf, Ministry of Education (Nanning Normal University), Nanning, China
| | - Xinyi Qin
- Key Laboratory of Environment Change and Resources Use in Beibu Gulf, Ministry of Education (Nanning Normal University), Nanning, China
| | | | - Xiaoli Li
- School of Agriculture, Ludong University, Yantai, China
| | - Ke Dong
- Department of Biological Sciences, Kyonggi University, Suwon-si, Gyeonggi-do, South Korea
| | - Xiaofang Shi
- Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Academy of Marine Sciences (Guangxi Mangrove Research Center), Guangxi Academy of Sciences, Beihai, China
- Key Laboratory of the Coastal and Wetland Ecosystems (Xiamen University), Ministry of Education, College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Qinghua Hou
- Laboratory for Coastal Ocean Variation and Disaster Prediction, College of Ocean and Meteorology, Guangdong Ocean University, Zhanjiang, China
| | - Qingxiang Chen
- Laboratory for Coastal Ocean Variation and Disaster Prediction, College of Ocean and Meteorology, Guangdong Ocean University, Zhanjiang, China
| | - Pengbin Wang
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
| | - Gonglingxia Jiang
- Laboratory for Coastal Ocean Variation and Disaster Prediction, College of Ocean and Meteorology, Guangdong Ocean University, Zhanjiang, China
| | - Nan Li
- Laboratory for Coastal Ocean Variation and Disaster Prediction, College of Ocean and Meteorology, Guangdong Ocean University, Zhanjiang, China
- Key Laboratory of Climate, Resources and Environment in Continental Shelf Sea and Deep Sea of Department of Education of Guangdong Province, Guangdong Ocean University, Zhanjiang, China
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da Motta Portillo JT, Azevedo JAR, Barbo FE, Sawaya RJ. Opposite latitudinal gradients for species richness and phylogenetic diversity of endemic snakes in the Atlantic Forest. Curr Zool 2024; 70:522-530. [PMID: 39176063 PMCID: PMC11336678 DOI: 10.1093/cz/zoad032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Accepted: 07/17/2023] [Indexed: 08/24/2024] Open
Abstract
The decrease in species richness toward higher latitudes is an expected biogeographical pattern. This pattern could be related to particular environmental constraints and the evolutionary history of clades. However, species richness does not fully represent the evolutionary history of the clades behind their distributions. Phylogenetic diversity better clarifies the role of historical factors in biogeographical patterns. We analyzed environmental and historical drivers related to latitudinal variation in species richness and phylogenetic diversity of Atlantic Forest endemic snakes. We implemented species distribution models, from voucher-based locality points, to map the snake ranges and diversity. We used generalized additive mixed models to evaluate the relationships among the diversity metrics and area, topographical roughness, and past climate change velocity since the Last Maximum Glacial in the Atlantic Forest latitudinal gradient. Contrary to the expected general pattern, species richness was higher toward higher latitudes, being positively related to past climatic stability. Species richness also increased with total area and higher topographical roughness. Phylogenetic diversity, on the other hand, showed opposite relationships related to the same factors. Phylogenetic diversity increased with lower climatic stability in lower latitudes. Thus, dimensions of diversity were affected in different ways by historical and environmental constraints in this unique and threatened biodiversity hotspot.
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Affiliation(s)
- José Thales da Motta Portillo
- Programa de Pós-Graduação em Biologia Animal, Instituto de Biociências, Letras e Ciências Exatas, Universidade Estadual Paulista “Júlio de Mesquita Filho,”Rua Cristóvão Colombo, 2265, São José do Rio Preto, São Paulo 15054-000, Brazil
| | - Josué Anderson Rêgo Azevedo
- Programa de Coleções Científicas Biológicas, Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Avenida André Araújo, 2936, Manaus, Amazonas 69067-375, Brazil
- Gothenburg Global Biodiversity Centre, University of Gothenburg, Box 461, Gothenburg, Västra Götaland SE-405 30, Sweden
| | - Fausto Erritto Barbo
- Instituto Federal de Educação, Ciência e Tecnologia de Minas Gerais, Rodovia Machado – Paraguaçu, km 3, Machado, Minas Gerais 37750-000, Brazil
| | - Ricardo J Sawaya
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, Rua Arcturus, 03, São Bernardo do Campo, São Paulo 09606-070, Brazil
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da Costa GS, Cerqueira AF, de Brito CR, Mielke MS, Gaiotto FA. Epigenetics Regulation in Responses to Abiotic Factors in Plant Species: A Systematic Review. PLANTS (BASEL, SWITZERLAND) 2024; 13:2082. [PMID: 39124200 PMCID: PMC11314046 DOI: 10.3390/plants13152082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2024] [Revised: 04/23/2024] [Accepted: 04/28/2024] [Indexed: 08/12/2024]
Abstract
Plants have several mechanisms to adapt or acclimate to environmental stress. Morphological, physiological, or genetic changes are examples of complex plant responses. In recent years, our understanding of the role of epigenetic regulation, which encompasses changes that do not alter the DNA sequence, as an adaptive mechanism in response to stressful conditions has advanced significantly. Some studies elucidated and synthesized epigenetic mechanisms and their relationships with environmental change, while others explored the interplay between epigenetic modifications and environmental shifts, aiming to deepen our understanding of these complex processes. In this study, we performed a systematic review of the literature to analyze the progression of epigenetics studies on plant species' responses to abiotic factors. We also aimed to identify the most studied species, the type of abiotic factor studied, and the epigenetic technique most used in the scientific literature. For this, a search for articles in databases was carried out, and after analyzing them using pre-established inclusion criteria, a total of 401 studies were found. The most studied species were Arabidopsis thaliana and Oryza sativa, highlighting the gap in studies of non-economic and tropical plant species. Methylome DNA sequencing is the main technique used for the detection of epigenetic interactions in published studies. Furthermore, most studies sought to understand the plant responses to abiotic changes in temperature, water, and salinity. It is worth emphasizing further research is necessary to establish a correlation between epigenetic responses and abiotic factors, such as extreme temperatures and light, associated with climate change.
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Affiliation(s)
| | | | | | | | - Fernanda Amato Gaiotto
- Laboratório de Ecologia Aplicada à Conservação, Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, Rodovia Jorge Amado km 16, Ilhéus, BA 45662-900, Brazil; (G.S.d.C.)
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Michaelian K. The Pigment World: Life's Origins as Photon-Dissipating Pigments. Life (Basel) 2024; 14:912. [PMID: 39063667 PMCID: PMC11277707 DOI: 10.3390/life14070912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Revised: 07/03/2024] [Accepted: 07/06/2024] [Indexed: 07/28/2024] Open
Abstract
Many of the fundamental molecules of life share extraordinary pigment-like optical properties in the long-wavelength UV-C spectral region. These include strong photon absorption and rapid (sub-pico-second) dissipation of the induced electronic excitation energy into heat through peaked conical intersections. These properties have been attributed to a "natural selection" of molecules resistant to the dangerous UV-C light incident on Earth's surface during the Archean. In contrast, the "thermodynamic dissipation theory for the origin of life" argues that, far from being detrimental, UV-C light was, in fact, the thermodynamic potential driving the dissipative structuring of life at its origin. The optical properties were thus the thermodynamic "design goals" of microscopic dissipative structuring of organic UV-C pigments, today known as the "fundamental molecules of life", from common precursors under this light. This "UV-C Pigment World" evolved towards greater solar photon dissipation through more complex dissipative structuring pathways, eventually producing visible pigments to dissipate less energetic, but higher intensity, visible photons up to wavelengths of the "red edge". The propagation and dispersal of organic pigments, catalyzed by animals, and their coupling with abiotic dissipative processes, such as the water cycle, culminated in the apex photon dissipative structure, today's biosphere.
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Affiliation(s)
- Karo Michaelian
- Department of Nuclear Physics and Application of Radiation, Instituto de Física, Universidad Nacional Autónoma de México, Circuito Interior de la Investigación Científica, Cuidad Universitaria, Cuidad de México CP 04510, Mexico
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Coppo GC, Pereira AP, Netto SA, Bernardino AF. Meiofauna at a tropical sandy beach in the SW Atlantic: the influence of seasonality on diversity. PeerJ 2024; 12:e17727. [PMID: 39011380 PMCID: PMC11249015 DOI: 10.7717/peerj.17727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 06/20/2024] [Indexed: 07/17/2024] Open
Abstract
Background Sandy beaches are dynamic environments housing a large diversity of organisms and providing important environmental services. Meiofaunal metazoan are small organisms that play a key role in the sediment. Their diversity, distribution and composition are driven by sedimentary and oceanographic parameters. Understanding the diversity patterns of marine meiofauna is critical in a changing world. Methods In this study, we investigate if there is seasonal difference in meiofaunal assemblage composition and diversity along 1 year and if the marine seascapes dynamics (water masses with particular biogeochemical features, characterized by temperature, salinity, absolute dynamic topography, chromophoric dissolved organic material, chlorophyll-a, and normalized fluorescent line height), rainfall, and sediment parameters (total organic matter, carbonate, carbohydrate, protein, lipids, protein-to-carbohydrate, carbohydrate-to-lipids, and biopolymeric carbon) affect significatively meiofaunal diversity at a tropical sandy beach. We tested two hypotheses here: (i) meiofaunal diversity is higher during warmer months and its composition changes significatively among seasons along a year at a tropical sandy beach, and (ii) meiofaunal diversity metrics are significantly explained by marine seascapes characteristics and sediment parameters. We used metabarcoding (V9 hypervariable region from 18S gene) from sediment samples to assess the meiofaunal assemblage composition and diversity (phylogenetic diversity and Shannon's diversity) over a period of 1 year. Results Meiofauna was dominated by Crustacea (46% of sequence reads), Annelida (28% of sequence reads) and Nematoda (12% of sequence reads) in periods of the year with high temperatures (>25 °C), high salinity (>31.5 ppt), and calm waters. Our data support our initial hypotheses revealing a higher meiofaunal diversity (phylogenetic and Shannon's Diversity) and different composition during warmer periods of the year. Meiofaunal diversity was driven by a set of multiple variables, including biological variables (biopolymeric carbon) and organic matter quality (protein content, lipid content, and carbohydrate-to-lipid ratio).
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Affiliation(s)
- Gabriel C Coppo
- Grupo de Ecologia Bentônica, Universidade Federal do Espírito Santo, Vitória, Espírito Santo, Brazil
| | - Araiene P Pereira
- Grupo de Ecologia Bentônica, Universidade Federal do Espírito Santo, Vitória, Espírito Santo, Brazil
| | - Sergio A Netto
- Marítima Estudos Bênticos, Laguna, Santa Catarina, Brazil
| | - Angelo F Bernardino
- Grupo de Ecologia Bentônica, Universidade Federal do Espírito Santo, Vitória, Espírito Santo, Brazil
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Hu W, Zheng N, Zhang Y, Li S, Bartlam M, Wang Y. Metagenomics analysis reveals effects of salinity fluctuation on diversity and ecological functions of high and low nucleic acid content bacteria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 933:173186. [PMID: 38744390 DOI: 10.1016/j.scitotenv.2024.173186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 05/09/2024] [Accepted: 05/10/2024] [Indexed: 05/16/2024]
Abstract
Salinity is a critical environmental factor in marine ecosystems and has complex and wide-ranging biological effects. However, the effects of changing salinity on diversity and ecological functions of high nucleic acid (HNA) and low nucleic acid (LNA) bacteria are not well understood. In this study, we used 16S rRNA sequencing and metagenomic sequencing analysis to reveal the response of HNA and LNA bacterial communities and their ecological functions to salinity, which was decreased from 26 ‰ to 16 ‰. The results showed that salinity changes had significant effects on the community composition of HNA and LNA bacteria. Among LNA bacteria, 14 classes showed a significant correlation between relative abundance and salinity. Salinity changes can lead to the transfer of some bacteria from HNA bacteria to LNA bacteria. In the network topology relationship, the complexity of the network between HNA and LNA bacterial communities gradually decreased with decreased salinity. The abundance of some carbon and nitrogen cycling genes in HNA and LNA bacteria varied with salinity. Overall, this study demonstrates the effects of salinity on diversity and ecological functions and suggests the importance of salinity in regulating HNA and LNA bacterial communities and functions.
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Affiliation(s)
- Wei Hu
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin, China
| | - Ningning Zheng
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin, China
| | - Yi Zhang
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin, China
| | - Shuhan Li
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin, China
| | - Mark Bartlam
- State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin, China.
| | - Yingying Wang
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin, China.
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Sandal L, Sæther BE, Freckleton RP, Noble DG, Schwarz J, Leivits A, Grøtan V. Species richness and evenness of European bird communities show differentiated responses to measures of productivity. J Anim Ecol 2024. [PMID: 38979934 DOI: 10.1111/1365-2656.14136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Accepted: 05/14/2024] [Indexed: 07/10/2024]
Abstract
Understanding patterns of species diversity is crucial for ecological research and conservation, and this understanding may be improved by studying patterns in the two components of species diversity, species richness and evenness of abundance of species. Variation in species richness and evenness has previously been linked to variation in total abundance of communities as well as productivity gradients. Exploring both components of species diversity is essential because these components could be unrelated or driven by different mechanisms. The aim of this study was to investigate the relationship between species richness and evenness in European bird communities along an extensive latitudinal gradient. We examined their relationships with latitude and Net Primary Productivity, which determines energy and matter availability for heterotrophs, as well as their responses to territory densities (i.e. the number of territories per area) and community biomass (i.e. the bird biomass per area). We applied a multivariate Poisson log-normal distribution to unique long-term, high-quality time-series data, allowing us to estimate species richness of the community as well as the variance of this distribution, which acts as an inverse measure of evenness. Evenness in the distribution of abundance of species in the community was independent of species richness. Species richness increased with increasing community biomass, as well as with increasing density. Since both measures of abundance were explained by NPP, species richness was partially explained by energy-diversity theory (i.e. the more energy, the more species sustained by the ecosystem). However, species richness did not increase linearly with NPP but rather showed a unimodal relationship. Evenness was not explained either by productivity nor by any of the aspects of community abundance. This study highlights the importance of considering both richness and evenness to gain a better understanding of variation in species diversity. We encourage the study of both components of species diversity in future studies, as well as use of simulation studies to verify observed patterns between richness and evenness.
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Affiliation(s)
- Lisa Sandal
- Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway
| | - Bernt-Erik Sæther
- Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway
| | - Robert P Freckleton
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK
| | - David G Noble
- British Trust for Ornithology, Thetford, Norfolk, UK
| | | | - Agu Leivits
- Department of Nature Conservation, Environmental Board, Pärnu, Estonia
| | - Vidar Grøtan
- Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway
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11
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Quigley KM, Baird AH. Future climate warming threatens coral reef function on World Heritage reefs. GLOBAL CHANGE BIOLOGY 2024; 30:e17407. [PMID: 39011806 DOI: 10.1111/gcb.17407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2024] [Revised: 05/29/2024] [Accepted: 06/04/2024] [Indexed: 07/17/2024]
Abstract
Climate change is the most significant threat to natural World Heritage (WH) sites, especially in the oceans. Warming has devastated marine faunas, including reef corals, kelp, and seagrass. Here, we project future declines in species and ecosystem functions across Australia's four WH coral reef regions. Model simulations estimating species-level abundances and probabilities of ecological persistence were combined with trait space reconstructions at "present," 2050 (+1.5°C of warming), and 2100 (+2°C) to explore biogeographical overlaps and identify key functional differences and forecast changes in function through time. Future climates varied by region, with Shark Bay projected to warm the most (>1.29°C), followed by Lord Howe, when standardized to marine park size. By 2050, ~40% of the Great Barrier Reef will exceed critical thresholds set by the warmest summer month (mean monthly maximum [MMM]), triggering mortality. Functional diversity was greatest at Ningaloo. At +1.5°C of warming, species and regions varied drastically in their functional responses, declined 20.2% in species richness (~70 extinctions) and lost functions across all reefs. At +2°C, models predicted a complete collapse of functions, consistent with IPCC forecasts. This variability suggests a bespoke management approach is needed for each region and is critical for understanding WH vulnerability to climate change, identifying thresholds, and quantifying uncertainty of impacts. This knowledge will aid in focusing management, policy and conservation actions to direct resources, rapid action, and set biodiversity targets for these reefs of global priority. As reefs reassemble into novel or different configurations, determining the winners and losers of functional space will be critical for meeting global landmark biodiversity goals.
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Affiliation(s)
- Kate M Quigley
- Minderoo Foundation, Perth, Western Australia, Australia
- College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
| | - Andrew H Baird
- College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
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12
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Wei M, Feng T, Lin Y, He S, Yan H, Qiao R, Chen Q. Elevation-associated pathways mediate aquatic biodiversity at multi-trophic levels along a plateau inland river. WATER RESEARCH 2024; 258:121779. [PMID: 38772321 DOI: 10.1016/j.watres.2024.121779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 04/24/2024] [Accepted: 05/13/2024] [Indexed: 05/23/2024]
Abstract
Aquatic biodiversity plays a significant role in maintaining the ecological balance and the overall health of riverine ecosystems. Elevation is an important factor influencing biodiversity patterns. However, it is still unclear through which pathway elevation influences riverine biodiversity at different trophic levels. In this study, the elevation-associated pathways affecting aquatic biodiversity at different trophic levels were explored using structural equation modeling (SEM) and taking the Bayin River, China as the case. The results showed that the elevational patterns were different among aquatic organisms at different trophic levels. For macroinvertebrates and bacteria, the pattern was hump-shaped; while for phytoplankton and zooplankton, it was U-shaped. Building upon these observed elevational patterns, our investigation delved into the direct and indirect pathways through which elevation influences aquatic biodiversity. We found that elevation exerts an impact on aquatic biodiversity via indirect pathways. For all aquatic organisms investigated, the major pathway through which elevation influences biodiversity is mediated by water temperature and water quality. For aquatic organisms at higher trophic levels, like macroinvertebrates and zooplankton, the crucial pathway is also mediated by the landscape. The results of this study contributed to understanding the effects of elevation on aquatic organisms at different trophic levels and provided an important basis for the assessment of riverine biodiversity at large scales.
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Affiliation(s)
- Mengru Wei
- Yangtze Institute for Conservation and Development, Nanjing 210098, China; Center for Eco-Environment Research, Nanjing Hydraulic Research Institute, Nanjing 210029, China; College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
| | - Tao Feng
- Center for Eco-Environment Research, Nanjing Hydraulic Research Institute, Nanjing 210029, China.
| | - Yuqing Lin
- Yangtze Institute for Conservation and Development, Nanjing 210098, China; Center for Eco-Environment Research, Nanjing Hydraulic Research Institute, Nanjing 210029, China
| | - Shufeng He
- Center for Eco-Environment Research, Nanjing Hydraulic Research Institute, Nanjing 210029, China
| | - Hanlu Yan
- Center for Eco-Environment Research, Nanjing Hydraulic Research Institute, Nanjing 210029, China
| | - Ruxia Qiao
- Center for Eco-Environment Research, Nanjing Hydraulic Research Institute, Nanjing 210029, China
| | - Qiuwen Chen
- Yangtze Institute for Conservation and Development, Nanjing 210098, China; Center for Eco-Environment Research, Nanjing Hydraulic Research Institute, Nanjing 210029, China; College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China.
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13
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Ji M, Li Y, Zhou J, Song W, Zhou Y, Ma K, Wang M, Liu X, Li Y, Gong X, Tu Q. Temporal turnover of viral biodiversity and functional potential in intertidal wetlands. NPJ Biofilms Microbiomes 2024; 10:48. [PMID: 38898104 PMCID: PMC11186824 DOI: 10.1038/s41522-024-00522-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2023] [Accepted: 06/07/2024] [Indexed: 06/21/2024] Open
Abstract
As the central members of the microbiome networks, viruses regulate the composition of microbial communities and drive the nutrient cycles of ecosystems by lysing host cells. Therefore, uncovering the dynamic patterns and the underlying ecological mechanisms mediating the tiniest viral communities across space and through time in natural ecosystems is of crucial importance for better understanding the complex microbial world. Here, the temporal dynamics of intertidal viral communities were investigated via a time-series sampling effort. A total of 1911 viral operational taxonomic units were recovered from 36 bimonthly collected shotgun metagenomes. Functionally important auxiliary metabolic genes involved in carbohydrate, sulfur, and phosphorus metabolism were detected, some of which (e.g., cysH gene) were stably present within viral genomes over time. Over the sampling period, strong and comparable temporal turnovers were observed for intertidal viromes and their host microbes. Winter was determined as the pivotal point for the shifts in viral diversity patterns. Notably, the viral micro-diversity covaried with the macro-diversity, following similar temporal patterns. The relative abundances of viral taxa also covaried with their host prokaryotes. Meanwhile, the virus-host relationships at the whole community level were relatively stable. Further statistical analyses demonstrated that the dynamic patterns of viral communities were highly deterministic, for which temperature was the major driver. This study provided valuable mechanistic insights into the temporal turnover of viral communities in complex ecosystems such as intertidal wetlands.
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Affiliation(s)
- Mengzhi Ji
- Institute of Marine Science and Technology, Shandong University, Qingdao, Shandong Province, China
| | - Yan Li
- Institute of Marine Science and Technology, Shandong University, Qingdao, Shandong Province, China
| | - Jiayin Zhou
- Institute of Marine Science and Technology, Shandong University, Qingdao, Shandong Province, China
| | - Wen Song
- Institute of Marine Science and Technology, Shandong University, Qingdao, Shandong Province, China
| | - Yuqi Zhou
- Institute of Marine Science and Technology, Shandong University, Qingdao, Shandong Province, China
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Kai Ma
- Institute of Marine Science and Technology, Shandong University, Qingdao, Shandong Province, China
| | - Mengqi Wang
- Institute of Marine Science and Technology, Shandong University, Qingdao, Shandong Province, China
| | - Xia Liu
- Institute of Marine Science and Technology, Shandong University, Qingdao, Shandong Province, China
| | - Yueyue Li
- Institute of Marine Science and Technology, Shandong University, Qingdao, Shandong Province, China
| | - Xiaofan Gong
- Institute of Marine Science and Technology, Shandong University, Qingdao, Shandong Province, China
| | - Qichao Tu
- Institute of Marine Science and Technology, Shandong University, Qingdao, Shandong Province, China.
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou, China.
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14
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Tang J, Cui J, Wang G, Jiang Y, Zhou H, Jiang J, Xie F, Wang J, Chen G. Two-Dimensional Amphibian Diversity along a 3500 m Elevational Gradient at the Eastern Edge of the Qinghai-Xizang Plateau. Animals (Basel) 2024; 14:1723. [PMID: 38929342 PMCID: PMC11200667 DOI: 10.3390/ani14121723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2024] [Revised: 06/01/2024] [Accepted: 06/05/2024] [Indexed: 06/28/2024] Open
Abstract
Amphibians serve as reliable indicators of ecosystem health and are the most threatened group of vertebrates. Studies on their spatial distribution pattern and threats are crucial to formulate conservation strategies. Gongga Mountains, with a peak at 7509 m a.s.l. and running latitudinally, are in the center of the Hengduan Mountains Range and at the eastern steep edge of the Qinghai-Xizang Plateau, providing heterogeneous habitats and varied niches for amphibians. In this study, we combined 83 days of field work with information from 3894 museum specimens that were collected over the past 80 years, and identified twenty amphibian species belonging to seven families and twelve genera by morphology. Of these species, seven were listed in the threatened categories of the Red List of China's Biodiversity and thirteen were endemic to China. Ten species were found on the plateau side (western slope) and eleven species were found on the other side close to the Sichuan Basin (eastern slope). Only one species was found on both sides, indicating different community structures horizontally. The species richness was unimodal vertically and peaking at mid elevation on both sides, with the maximum number (ten vs. nine) of species occurring at 3300-3700 vs. 1700-1900 m a.s.l. and in different types of vegetation. The elevation span and body length of species distributed on both slopes did not show significant differences. These findings help to understand the horizontal and vertical distribution pattern of amphibian diversity, laying a foundation for future biogeographical and conservation research in this area.
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Affiliation(s)
- Jiaxing Tang
- College of Life Sciences, Sichuan Normal University, Chengdu 610101, China;
| | - Jiaxin Cui
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610213, China; (J.C.)
| | - Gang Wang
- College of Chemistry and Life Sciences, Chengdu Normal University, Chengdu 611130, China;
| | - Yong Jiang
- Sichuan Gongga Mountains National Nature Reserve, Kangding 626000, China
| | - Huaming Zhou
- Ganzi Tibetan Autonomous Prefecture Forestry Research Institute, Kangding 626001, China
| | - Jianping Jiang
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610213, China; (J.C.)
| | - Feng Xie
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610213, China; (J.C.)
| | - Jie Wang
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610213, China; (J.C.)
| | - Guiying Chen
- College of Life Sciences, Sichuan Normal University, Chengdu 610101, China;
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15
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Li Y, Liu F, Zhou Y, Liu X, Wang Q. Large-scale geographic patterns and environmental and anthropogenic drivers of wetland plant diversity in the Qinghai-Tibet Plateau. BMC Ecol Evol 2024; 24:74. [PMID: 38831426 PMCID: PMC11145778 DOI: 10.1186/s12862-024-02263-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2023] [Accepted: 05/23/2024] [Indexed: 06/05/2024] Open
Abstract
BACKGROUND The geographic patterns of plant diversity in the Qinghai-Tibet Plateau (QTP) have been widely studied, but few studies have focused on wetland plants. This study quantified the geographic patterns of wetland plant diversity in the QTP through a comprehensive analysis of taxonomic, phylogenetic and functional indices. METHODS Based on a large number of floras, monographs, specimens and field survey data, we constructed a comprehensive dataset of 1,958 wetland plant species in the QTP. Species richness (SR), phylogenetic diversity (PD), functional diversity (FD), net relatedness index (NRI) and net functional relatedness index (NFRI) were used to assess the taxonomic, phylogenetic and functional diversity of wetland plants. We explored the relationships between the diversity indices and four categories of environmental variables (i.e. energy-water, climate seasonality, topography and human activities). We used four diversity indices, namely endemic species richness, weighted endemism, phylogenetic endemism and functional endemism, together with the categorical analysis of neo- and paleo-endemism (CANAPE), to identify the endemic centers of wetland plants in the QTP. RESULTS SR, PD and FD were highly consistent and showed a decreasing trend from southeast to northwest, decreasing with increasing elevation. The phylogenetic structure of wetland plant assemblages in most parts of the plateau is mainly clustered. The functional structure of wetland plant assemblages in the southeast of the plateau is overdispersed, while the functional structure of wetland plant assemblages in other areas is clustered. Energy-water and climate seasonality were the two most important categories of variables affecting wetland plant diversity. Environmental variables had a greater effect on the functional structure of wetland plants than on the phylogenetic structure. This study identified seven endemic centres, mainly in the Himalayas and Hengduan Mountains. CONCLUSIONS Climate and topography are the main factors determining the geographic distribution of wetland plant diversity at large scales. The majority of grid cells in the QTP with significant phylogenetic endemism were mixed and super-endemism. At large scales, compared to climate and topography, human activities may not have a negative impact on wetland plant diversity in the QTP.
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Affiliation(s)
- Yigang Li
- College of Life Sciences and Technology, Hubei Engineering University, Xiaogan, China
- Laboratory of Extreme Environment Biological Resources and Adaptive Evolution, School of Ecology and Environment, Tibet University, Lhasa, China
| | - Fan Liu
- Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
| | - Yadong Zhou
- School of Life Sciences, Nanchang University, Nanchang, Jiangxi, China.
| | - Xing Liu
- Laboratory of Extreme Environment Biological Resources and Adaptive Evolution, School of Ecology and Environment, Tibet University, Lhasa, China
- Key Laboratory of Biodiversity and Environment on the Qinghai-Tibet Plateau, Ministry of Education, College of Life Sciences, Wuhan University, Wuhan, China
| | - Qingfeng Wang
- Laboratory of Extreme Environment Biological Resources and Adaptive Evolution, School of Ecology and Environment, Tibet University, Lhasa, China
- Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
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16
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Amarasingha S, Anupama NMT, Rajakaruna RS, Rajapakse RPVJ, Perera PK. Effect of Soil Temperature on Canine Soil-Transmitted Nematodes in Kandy District with the First Record of Hookworm, Ancylostoma tubaeforme from Sri Lanka. Acta Parasitol 2024; 69:1097-1106. [PMID: 38514604 DOI: 10.1007/s11686-024-00829-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2023] [Accepted: 02/05/2024] [Indexed: 03/23/2024]
Abstract
PURPOSE Soil-transmitted nematodes (STNs) are widespread in tropical and subtropical regions, particularly where the communities are socio-economically challenged. We investigated the effect of soil temperature on the prevalence and intensity of STN infection in free-roaming dogs. METHODS Fresh faecal samples collected from free-roaming dogs in Digana and Pussellawa town areas in the Kandy District, Sri Lanka, were microscopically analysed for canine STNs. Soil temperature was measured at each sampling site. Highly prevalent canine hookworm Ancylostoma, was further studied using PCR and sequencing, followed by phylogenetic analysis. RESULTS The soil temperature ranged between 28 and 31 °C (mean = 29.79 °C) and 18-21 °C (mean = 19.52 °C) in Digana and Pussellawa, respectively, showing a significant difference in the two sites (Students t-test t = 1.68, p < 0.0001). Of the total 44 dogs sampled, 41 (93.2%) were positive for STNs. During microscopic analysis, five nematodes: Ancylostoma spp., Capillaria sp., Strongyloides sp., Toxocara canis, and Trichuris sp., were identified. Ancylostoma species (93.2%) were the most prevalent, followed by Strongyloides sp. (22.7%) and Toxocara canis (15.9%). Infection prevalence of Strongyloides sp. was higher in Digana (40.9%) compared to that in Pussellawa (4.5%; Chi-square test, χ2 = 8.28, p = 0.004) and also the infection intensity from Digana (EPG = 8.02 ± 20.2) compared to that from Pussellawa (0.45 ± 2.1; Mann Whitney U test, p = 0.006). Amplicons (ITS1-5.8S-ITS2) of the expected size for A. caninum, and A. tubaeforme were produced. An A. caninum sequence reported here (OQ101719) illustrated the highest similarity of 99.2% to one of the local sequences (MZ707153) upon pairwise comparison. CONCLUSION Digana, with a higher soil temperature than Pussellawa, had a significantly higher prevalence and infection intensity, particularly Strongyloides sp. This study also signifies the first molecular identification of hookworm species A. tubaeforme in Sri Lanka.
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Affiliation(s)
- Sakunika Amarasingha
- Department of Zoology, Faculty of Science, University of Peradeniya, Peradeniya, Sri Lanka
| | - N M T Anupama
- Department of Veterinary Pathobiology, Faculty of Veterinary Medicine and Animal Science, University of Peradeniya, Peradeniya, Sri Lanka
| | - Rupika S Rajakaruna
- Department of Zoology, Faculty of Science, University of Peradeniya, Peradeniya, Sri Lanka
| | - R P V J Rajapakse
- Department of Veterinary Pathobiology, Faculty of Veterinary Medicine and Animal Science, University of Peradeniya, Peradeniya, Sri Lanka
| | - Piyumali K Perera
- Department of Zoology, Faculty of Science, University of Peradeniya, Peradeniya, Sri Lanka.
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17
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Liu J, Lindstrom AJ, Gong Y, Dong S, Liu YC, Zhang S, Gong X. Eco-evolutionary evidence for the global diversity pattern of Cycas (Cycadaceae). JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2024; 66:1170-1191. [PMID: 38477647 DOI: 10.1111/jipb.13638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Revised: 02/04/2024] [Accepted: 02/23/2024] [Indexed: 03/14/2024]
Abstract
The evolution of the latitudinal diversity gradient (LDG), characterized by a peak in diversity toward the tropics, has captured significant attention in evolutionary biology and ecology. However, the inverse LDG (i-LDG) mechanism, wherein species richness increases toward the poles, remains inadequately explored. Cycads are among one of the oldest lineages of extant seed plants and have undergone extensive diversification in the tropics. Intriguingly, the extant cycad abundance exhibits an i-LDG pattern, and the underlying causes for this phenomenon remain largely elusive. Here, using 1,843 nuclear genes from a nearly complete sampling, we conducted comprehensive phylogenomic analyses to establish a robust species-level phylogeny for Cycas, the largest genus within cycads. We then reconstructed the spatial-temporal dynamics and integrated global environmental data to evaluate the roles of species ages, diversification rates, contemporary environment, and conservatism to ancestral niches in shaping the i-LDG pattern. We found Cycas experienced decreased diversification rates, coupled with the cooling temperature since its origin in the Eocene from continental Asia. Different regions have distinctively contributed to the formation of i-LDG for Cycas, with the northern hemisphere acting as evolutionary museums and the southern hemisphere serving as cradles. Moreover, water-related climate variables, specifically precipitation seasonality and potential evapotranspiration, were identified as paramount factors constraining Cycas species richness in the rainforest biome near the equator. Notably, the adherence to ancestral monsoonal climates emerges as a critical factor in sustaining the diversity pattern. This study underscores the imperative of integrating both evolutionary and ecological approaches to comprehensively unravel the mechanisms underpinning global biodiversity patterns.
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Affiliation(s)
- Jian Liu
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Anders J Lindstrom
- Global Biodiversity Conservancy, 144/124 Moo3, Soi Bua Thong, Bangsalae, Sattahip, Chonburi, 20250, Thailand
| | - Yiqing Gong
- Key Laboratory of Southern Subtropical Plant Diversity, Fairy Lake Botanical Garden, Shenzhen & Chinese Academy of Sciences, Shenzhen, 518004, China
| | - Shanshan Dong
- Key Laboratory of Southern Subtropical Plant Diversity, Fairy Lake Botanical Garden, Shenzhen & Chinese Academy of Sciences, Shenzhen, 518004, China
| | - Yusheng Chris Liu
- Department of Earth and Environmental Sciences, Indiana University-Indianapolis, Indianapolis, 46202, IN, USA
| | - Shouzhou Zhang
- Key Laboratory of Southern Subtropical Plant Diversity, Fairy Lake Botanical Garden, Shenzhen & Chinese Academy of Sciences, Shenzhen, 518004, China
| | - Xun Gong
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
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18
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Yu Y, Fan MY, Zhou HX, Song YQ. The global pattern of epiphytic liverwort disparity: insights from Frullania. BMC Ecol Evol 2024; 24:63. [PMID: 38741051 DOI: 10.1186/s12862-024-02254-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Accepted: 05/07/2024] [Indexed: 05/16/2024] Open
Abstract
The geographical and ecological patterns of morphological disparity are crucial to understand how species are assembled within communities in the context of the evolutionary history, morphological evolution and ecological interactions. However, with limited exceptions, rather few studies have been conducted on the global pattern of disparity, particularly in early land plants. Here we explored the spatial accumulation of disparity in a morphologically variable and species rich liverwort genus Frullania in order to test the hypothesis of latitude disparity gradient. We compiled a morphological data set consisting of eight continuous traits for 244 currently accepted species, and scored the species distribution into 19 floristic regions worldwide. By reconstructing the morphospace of all defined regions and comparisons, we identified a general Gondwana-Laurasia pattern of disparity in Frullania. This likely results from an increase of ecological opportunities and / or relaxed constraints towards low latitudes. The lowest disparity occurred in arid tropical regions, largely due to a high extinction rate as a consequence of paleoaridification. There was weak correlation between species diversity and disparity at different spatial scales. Furthermore, long-distance dispersal may have partially shaped the present-day distribution of Frullania disparity, given its frequency and the great contribution of widely distributed species to local morphospace. This study not only highlighted the crucial roles of paleoenvironmental changes, ecological opportunities, and efficient dispersal on the global pattern of plant disparity, but also implied its dependence on the ecological and physiological function of traits.
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Affiliation(s)
- Ying Yu
- College of Life and Environmental Sciences, Huangshan University, Huangshan, 245041, China.
| | - Mei-Ying Fan
- College of Life and Environmental Sciences, Huangshan University, Huangshan, 245041, China
| | - Hong-Xia Zhou
- College of Life and Environmental Sciences, Huangshan University, Huangshan, 245041, China
| | - Yue-Qin Song
- College of Life and Environmental Sciences, Huangshan University, Huangshan, 245041, China
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Swart RC, Geerts S, Geldenhuys CJ, Pauw J, Coetzee A. Weak latitudinal trends in reproductive traits of Afromontane forest trees. ANNALS OF BOTANY 2024; 133:711-724. [PMID: 37407025 PMCID: PMC11082511 DOI: 10.1093/aob/mcad080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2023] [Accepted: 07/05/2023] [Indexed: 07/07/2023]
Abstract
BACKGROUND AND AIMS Is the increase in species diversity patterns towards lower latitudes linked to reproductive traits? Plant reproductive organs influence reproductive isolation and hence species divergence. Abiotic differences between temperate and tropical regions can also directly impact on plant reproductive traits. Here we provide a novel overview of southern hemisphere, Afromontane forest tree taxonomical patterns and ask whether reproductive traits relate to latitude, while accounting for environmental (tree height) and evolutionary (biogeographical affinity) selective forces. METHODS We compiled a novel dataset with (1) flower colour, size and pollination syndrome and (2) fruit colour, size and dispersal syndrome for 331 tree species found in six Afromontane forest regions. We categorized each species into latitudinal distribution using these six regions, spanning the southern Cape (34º S) to Mount Kenya (0º S). Additionally, we gathered maximum tree height (m) for each species and determined the global distribution of all 196 tree genera (Afrotropical, Palaeotropical or Pantropical). KEY RESULTS Species, genera and families showed a general decrease in richness away from tropical and subtropical forests towards warm temperate forests. Southern Afrotemperate forests (the furthest south) had the highest tree endemism. There was no relationship between latitude and the reproductive traits tested here. Biogeographical affinity related to fruit colour and dispersal syndrome, with palaeotropical genera showing relative increases in black-purple fruit colour compared with pantropical genera, and palaeotropical genera showing relative increases in biotic seed dispersal compared with Afrotropical genera, which showed higher relative abiotic seed dispersal. Taller trees had a higher chance to be wind or insect pollinated (compared with bird pollinated) and had larger fruits. CONCLUSIONS Latitude explained patterns in Afromontane tree taxonomic diversity; however, tree reproductive traits did not relate to latitude. We suggest that phylogenetic conservatism or convergence, or both, explain the reported patterns.
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Affiliation(s)
- R C Swart
- Department of Conservation Management, Faculty of Science, George Campus, Nelson Mandela University, George 6530, South Africa
| | - S Geerts
- Department of Conservation and Marine Sciences, Cape Peninsula University of Technology, PO Box 652, Cape Town, 8000, South Africa
| | - C J Geldenhuys
- Department of Plant and Soil Sciences, University of Pretoria, Pretoria 0184, South Africa
| | - J Pauw
- Department of Conservation Management, Faculty of Science, George Campus, Nelson Mandela University, George 6530, South Africa
| | - A Coetzee
- Department of Conservation Management, Faculty of Science, George Campus, Nelson Mandela University, George 6530, South Africa
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20
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Cramer MD, Anthony Verboom G. Quantitative evaluation of the drivers of species richness in a Mediterranean ecosystem (Cape, South Africa). ANNALS OF BOTANY 2024; 133:801-818. [PMID: 37712853 PMCID: PMC11082525 DOI: 10.1093/aob/mcad134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Accepted: 09/07/2023] [Indexed: 09/16/2023]
Abstract
BACKGROUND AND AIMS Mediterranean ecosystems have a high vascular plant species richness (SR) relative to their surface area. This SR, representing the balance between speciation and extinction, has been attributed to multiple mechanisms that result in both high rates of speciation and/or low rates of extinction. An abiding question is, however, what is special about Mediterranean ecosystems that enables this high SR? Apart from the long-term climatic stability of the region, SR has also been related to resource availability, the many individuals hypothesis, resource spatial heterogeneity, temporal heterogeneity and biotic feedbacks. METHODS Spatial patterns of species richness were related to climatic, edaphic and biotic variables and to spatial variability within the Greater Cape Floristic Region (GCFR) of South Africa. Boosted regression tree models were used to explore the strength of relationships between SR and environmental predictors related to each hypothesized mechanism. KEY RESULTS Water availability (i.e. precipitation) was a stronger predictor of SR than potential evapotranspiration or temperature. Scarcity of nutrients was also related to SR. There was no indication that SR was related to the density of individuals and only temporal heterogeneity induced by fire was related to SR. Spatial heterogeneities of climatic, edaphic and biotic variables were strongly associated with SR. Biotic interactions remain difficult to assess, although we have some evidence for a putative role in regulating SR. CONCLUSIONS While the lack of ecosystem-resetting disturbances (e.g. glaciation) is undoubtedly a key requirement for high species accumulation, predictably, no one explanation holds the key to understanding SR. In the GCFR high SR is the product of a combination of adequate water, nutrient scarcity, spatial and temporal heterogeneity, and possibly biotic feedbacks.
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Affiliation(s)
- Michael D Cramer
- Department of Biological Sciences, University of Cape Town, Rondebosch, Cape Town, South Africa
| | - G Anthony Verboom
- Department of Biological Sciences, University of Cape Town, Rondebosch, Cape Town, South Africa
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21
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Blais BR, Koprowski JL. Modeling a hot, dry future: Substantial range reductions in suitable environment projected under climate change for a semiarid riparian predator guild. PLoS One 2024; 19:e0302981. [PMID: 38709740 PMCID: PMC11073737 DOI: 10.1371/journal.pone.0302981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Accepted: 04/15/2024] [Indexed: 05/08/2024] Open
Abstract
An understanding of species-environmental relationships is invaluable for effective conservation and management under anthropogenic climate change, especially for biodiversity hotspots such as riparian habitats. Species distribution models (SDMs) assess present species-environmental relationships which can project potential suitable environments through space and time. An understanding of environmental factors associated with distributions can guide conservation management strategies under a changing climate. We generated 260 ensemble SDMs for five species of Thamnophis gartersnakes (n = 347)-an important riparian predator guild-in a semiarid and biogeographically diverse region under impact from climate change (Arizona, United States). We modeled present species-environmental relationships and projected changes to suitable environment under 12 future climate scenarios per species, including the most and least optimistic greenhouse gas emission pathways, through 2100. We found that Thamnophis likely advanced northward since the turn of the 20th century and overwinter temperature and seasonal precipitation best explained present distributions. Future ranges of suitable environment for Thamnophis are projected to decrease by ca. -37.1% on average. We found that species already threatened with extinction or those with warm trailing-edge populations likely face the greatest loss of suitable environment, including near or complete loss of suitable environment. Future climate scenarios suggest an upward advance of suitable environment around montane areas for some low to mid-elevation species, which may create pressures to ascend. The most suitable environmental areas projected here can be used to identify potential safe zones to prioritize conservation refuges, including applicable critical habitat designations. By bounding the climate pathway extremes to, we reduce SDM uncertainties and provide valuable information to help conservation practitioners mitigate climate-induced threats to species. Implementing informed conservation actions is paramount for sustaining biodiversity in important aridland riparian systems as the climate warms and dries.
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Affiliation(s)
- Brian R. Blais
- School of Natural Resources and the Environment, University of Arizona, Tucson, Arizona, United States of America
| | - John L. Koprowski
- School of Natural Resources and the Environment, University of Arizona, Tucson, Arizona, United States of America
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22
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LaManna JA. Uncovering drivers of global tree diversity. NATURE PLANTS 2024; 10:701-702. [PMID: 38637695 DOI: 10.1038/s41477-024-01695-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/20/2024]
Affiliation(s)
- Joseph A LaManna
- Department of Biological Sciences, Marquette University, Milwaukee, WI, USA.
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23
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Carvalho APS, Owens HL, St Laurent RA, Earl C, Dexter KM, Messcher RL, Willmott KR, Aduse-Poku K, Collins SC, Homziak NT, Hoshizaki S, Hsu YF, Kizhakke AG, Kunte K, Martins DJ, Mega NO, Morinaka S, Peggie D, Romanowski HP, Sáfián S, Vila R, Wang H, Braby MF, Espeland M, Breinholt JW, Pierce NE, Kawahara AY, Lohman DJ. Comprehensive phylogeny of Pieridae butterflies reveals strong correlation between diversification and temperature. iScience 2024; 27:109336. [PMID: 38500827 PMCID: PMC10945170 DOI: 10.1016/j.isci.2024.109336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 10/28/2023] [Accepted: 02/21/2024] [Indexed: 03/20/2024] Open
Abstract
Temperature is thought to be a key factor influencing global species richness patterns. We investigate the link between temperature and diversification in the butterfly family Pieridae by combining next generation DNA sequences and published molecular data with fine-grained distribution data. We sampled nearly 600 pierid butterfly species to infer the most comprehensive molecular phylogeny of the family and curated a distribution dataset of more than 800,000 occurrences. We found strong evidence that species in environments with more stable daily temperatures or cooler maximum temperatures in the warm seasons have higher speciation rates. Furthermore, speciation and extinction rates decreased in tandem with global temperatures through geological time, resulting in a constant net diversification.
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Affiliation(s)
- Ana Paula S. Carvalho
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
| | - Hannah L. Owens
- Center for Global Mountain Biodiversity, Globe Institute, University of Copenhagen, Copenhagen, Denmark
- Center for Macroecology, Evolution, and Climate, Globe Institute, University of Copenhagen, Copenhagen, Denmark
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Ryan A. St Laurent
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
- Department of Entomology, Smithsonian Institution, National Museum of Natural History, Washington, DC, USA
| | - Chandra Earl
- Department of Natural Sciences, Bernice Pauahi Bishop Museum, Honolulu, HI, USA
| | - Kelly M. Dexter
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
| | - Rebeccah L. Messcher
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
| | - Keith R. Willmott
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
| | | | | | - Nicholas T. Homziak
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
- Department of Entomology and Nematology, University of Florida, Gainesville, FL, USA
| | - Sugihiko Hoshizaki
- Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Yu-Feng Hsu
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan, R.O.C
| | - Athulya G. Kizhakke
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bengaluru, India
| | - Krushnamegh Kunte
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bengaluru, India
| | - Dino J. Martins
- Turkana Basin Institute, Stony Brook University, Stony Brook, NY, USA
- Insect Committee of Nature Kenya, The East Africa Natural History Society, Nairobi, Kenya
| | - Nicolás O. Mega
- Programa de Pós-Graduação em Biologia Animal, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Sadaharu Morinaka
- Saitama Study Center, The Open University of Japan, Omiya-ku, Saitama City, Japan
| | - Djunijanti Peggie
- Museum Zoologi Bogor, Research Center for Biosystematics and Evolution, Research Organization for Life Sciences and Environment, National Research and Innovation Agency, Cibinong, Bogor, Indonesia
| | - Helena P. Romanowski
- Laboratório de Ecologia de Insetos, Departamento de Zoologia, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Szabolcs Sáfián
- African Butterfly Research Institute, Karen, Nairobi, Kenya
- Institute of Silviculture and Forest Protection, University of Sopron, Sopron, Hungary
| | - Roger Vila
- Institut de Biologia Evolutiva (CSIC-Univ. Pompeu Fabra), Barcelona, Spain
| | - Houshuai Wang
- Department of Entomology, College of Plant Protection, South China Agricultural University, Guangzhou, China
| | - Michael F. Braby
- Division of Ecology and Evolution, Research School of Biology, The Australian National University, Acton, ACT, Australia
- Australian National Insect Collection, National Research Collections Australia, Canberra, ACT, Australia
| | - Marianne Espeland
- Leibniz Institute for the Analysis of Biodiversity Change, Museum Koenig, Bonn, Germany
| | - Jesse W. Breinholt
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
- Intermountain Healthcare, Intermountain Precision Genomics, St. George, UT, USA
| | - Naomi E. Pierce
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Akito Y. Kawahara
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
- Department of Entomology and Nematology, University of Florida, Gainesville, FL, USA
- Department of Biology, University of Florida, Gainesville, FL, USA
| | - David J. Lohman
- Department of Biology, City University of New York, New York, NY, USA
- PhD Program in Biology, Graduate Center, City University of New York, New York, NY, USA
- Entomology Section, National Museum of Natural History, Manila, Philippines
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24
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Zhu H, Li S, Wu Z, Xiong X, Lin P, Liu B, He D, Liu G. Diversity Patterns of Eukaryotic Phytoplankton in the Medog Section of the Yarlung Zangbo River. MICROBIAL ECOLOGY 2024; 87:59. [PMID: 38619730 PMCID: PMC11018697 DOI: 10.1007/s00248-024-02371-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Accepted: 03/31/2024] [Indexed: 04/16/2024]
Abstract
As one of the important biodiversity conservation areas in China, the ecosystem in the lower reaches of the Yarlung Zangbo River is fragile, and is particularly sensitive to global changes. To reveal the diversity pattern of phytoplankton, the metabarcode sequencing was employed in the Medog section of the lower reaches of the Yarlung Zangbo River during autumn 2019 in present study. The phytoplankton assemblies can be significantly divided into the main stem and the tributaries; there are significant differences in the phytoplankton biomass, alpha and beta diversity between the main stem and the tributaries. While both the main stem and the tributaries are affected by dispersal limitation, the phytoplankton assemblages in the entire lower reaches are primarily influenced by heterogeneous selection. Community dissimilarity and assembly process were significantly correlated with turbidity, electrical conductivity, and nitrogen nutrition. The tributaries were the main source of the increase in phytoplankton diversity in the lower reaches of the Yarlung Zangbo River. Such diversity pattern of phytoplankton in the lower reach may be caused by the special habitat in Medog, that is, the excessive flow velocity, and the significant spatial heterogeneity in physical and chemical factors between stem and tributaries. Based on the results and conclusions obtained in present study, continuous long-term monitoring is essential to assess and quantify the impact of global changes on phytoplankton.
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Affiliation(s)
- Huan Zhu
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
| | - Shuyin Li
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
- Eco-Environmental Monitoring and Scientific Research Center, Yangtze River Basin Ecological Environment Supervision and Management Bureau, Ministry of Ecology and Environment, Wuhan, 430010, China
| | - Zhihua Wu
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
- College of Science, Tibet University, Lhasa, 850000, China
| | - Xiong Xiong
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
| | - Pengcheng Lin
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
| | - Benwen Liu
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
| | - Dekui He
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
| | - Guoxiang Liu
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China.
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Wang Y, Wang Z. Change of spermatophyte family diversity in distribution patterns with climate change in China. Heliyon 2024; 10:e28519. [PMID: 38596117 PMCID: PMC11002604 DOI: 10.1016/j.heliyon.2024.e28519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 01/01/2024] [Accepted: 03/20/2024] [Indexed: 04/11/2024] Open
Abstract
The global climate is undergoing extraordinary changes, profoundly influencing a variety of ecological processes. Understanding the distribution patterns and predicting the future of plant diversity is crucial for biodiversity conservation in the context of climate change. However, current studies on predictive geographic patterns of plant diversity often fail to separate the effects of global climate change from other influencing factors. In this study, we developed a spatial simulation model of spermatophyte family diversity (SSMSFD) based on data collected from 200 nature reserves covering approximately 1,500,000 km2, where direct anthropogenic disturbances to plant diversity and the surrounding environment are absent. We predicted the spermatophyte family diversity for all provinces in China in 2020, 2040, and 2080, considering the impacts of global climate change. On average, China currently exhibits 118 plant families per 25 km2, with a decreasing trend from southeast to northwest. When considering only the effects of global climate change, excluding direct anthropogenic disturbances, our results indicate that under the Shared Socioeconomic Path Scenarios (SSPs) 245 and 585, spermatophyte family diversity is projected to slowly increase in most Chinese provinces from 2021 to 2080. Notably, the increase is more pronounced under SSPs585 compared to SSPs245. Global climate change has a positive effect on plant diversity, in contrast to the negative impact of anthropogenic disturbances that often lead to declines in plant diversity. This research highlights the contrasting outcomes of future plant diversity under the sole influence of global climate change and the significant negative effects of anthropogenic disturbances on diversity.
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Affiliation(s)
- Yanzi Wang
- Key Laboratory of Subsurface Hydrology and Ecological Effects in Arid Region, Ministry of Education, Chang'an University, Xi'an, Shaanxi Province, 710054, China
- School of Water and Environment, Chang'an University, Xi'an, Shaanxi Province, 710054, China
| | - Zhenhong Wang
- Key Laboratory of Subsurface Hydrology and Ecological Effects in Arid Region, Ministry of Education, Chang'an University, Xi'an, Shaanxi Province, 710054, China
- School of Water and Environment, Chang'an University, Xi'an, Shaanxi Province, 710054, China
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26
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Zhao X, Wang J, Liu Q, Du W, Yang S, Cai P, Ni J. Multifunctionality promotes the prosperity of riverine planktonic diatoms in plateau. ENVIRONMENTAL RESEARCH 2024; 246:118148. [PMID: 38191040 DOI: 10.1016/j.envres.2024.118148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 12/20/2023] [Accepted: 01/05/2024] [Indexed: 01/10/2024]
Abstract
Interpreting the biogeographic distribution and underlying mechanisms of functional traits not only contributes to revealing the spatiotemporal dynamics of species biodiversity but also helps to maintain ecological stability during environmental variations. However, little is known about the functional profiles of diatom communities over large river systems. Herein, we provided the first blueprints about the spatiotemporal distributions and driving forces of functional traits for both planktonic and sedimentary diatoms over the 6030 km continuum of the Yangtze River, with the help of the high-throughput sequencing and functional identification. By investigating the 28 functional traits affiliated into five categories, we found that planktonic diatom functions showed clearer landform-heterogeneity patterns (ANOSIM R = 0.336) than sedimentary functions (ANOSIM R = 0.172) along the river, represented by life-forms and ecological-guilds prominent in water-plateau as well as cell-sizes and life-forms particularly in sediment-plateau. Planktonic diatom functions also displayed higher richness and network complexity in plateau (richness: 58.70 ± 9.30, network edges: 65) than in non-plateau regions (23.82 ± 13.16, 16), promoting the stability and robustness of diatom functions against the high-radiation and low-temperature plateau environment. Environmental selection (mainly exerted by PAR, UV, and Tw) played crucial roles in determining the functional variations of planktonic diatoms (explaining 80.5%) rather than sedimentary diatoms (14.5%) between plateau and non-plateau regions. Meanwhile, planktonic diatom traits within life-forms were identified to be well responsive to the ecological environment quality (r = 0.56-0.60, P < 0.001) in the Yangtze. This study provided comprehensive insights into the multifunctionality of diatoms and their responses to environmental disturbance and environment quality, which helps to develop effective strategies for maintaining ecological stability in changing river environments.
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Affiliation(s)
- Xiaohui Zhao
- School of Water Resources and Hydropower Engineering, Xi'an University of Technology, Xi'an, 710048, PR China
| | - Jiawen Wang
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, 518055, PR China; College of Environmental Sciences and Engineering, Peking University, Key Laboratory of Water and Sediment Sciences, Ministry of Education, Beijing, 100871, PR China.
| | - Qingxiang Liu
- College of Environmental Sciences and Engineering, Peking University, Key Laboratory of Water and Sediment Sciences, Ministry of Education, Beijing, 100871, PR China
| | - Wenran Du
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, 518055, PR China; College of Environmental Sciences and Engineering, Peking University, Key Laboratory of Water and Sediment Sciences, Ministry of Education, Beijing, 100871, PR China
| | - Shanqing Yang
- College of Environmental Sciences and Engineering, Peking University, Key Laboratory of Water and Sediment Sciences, Ministry of Education, Beijing, 100871, PR China
| | - Pinggui Cai
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, 518055, PR China; College of Environmental Sciences and Engineering, Peking University, Key Laboratory of Water and Sediment Sciences, Ministry of Education, Beijing, 100871, PR China
| | - Jinren Ni
- College of Environmental Sciences and Engineering, Peking University, Key Laboratory of Water and Sediment Sciences, Ministry of Education, Beijing, 100871, PR China
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27
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He G, Shi Z, Fang H, Shi L, Wang Y, Yang H, Yan B, Yang C, Yu J, Liang Q, Zhao L, Jiang Q. Climate and soil stressed elevation patterns of plant species to determine the aboveground biomass distributions in a valley-type Savanna. FRONTIERS IN PLANT SCIENCE 2024; 15:1324841. [PMID: 38601315 PMCID: PMC11004315 DOI: 10.3389/fpls.2024.1324841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Accepted: 03/14/2024] [Indexed: 04/12/2024]
Abstract
Introduction Extreme environments such as prolonged high temperatures and droughts can cause vulnerability of vegetation ecosystems. The dry-hot valleys of Southwestern China, known for their extremely high annual temperature, lack of water, and unique non-zonal "hot island" habitat in the global temperate zone, provide exceptional sites for studying how plant adapts to the prolonged dry and hot environment. However, the specific local biotic-environment relationships in these regions remain incompletely elucidated. The study aims to evaluate how valley-type Savanna vegetation species and their communities adapt to long-term drought and high-temperature stress environments. Methods The study investigated the changes in species diversity and communities' aboveground biomass of a valley-type Savanna vegetation along an elevation gradient of Yuanmou dry-hot valley in Jinsha River basin, southwest China. Subsequently, a general linear model was utilized to simulate the distribution pattern of species diversities and their constituent biomass along the elevation gradient. Finally, the RDA and VPH mothed were used to evaluate the impacts and contributions of environmental factors or variables on the patterns. Results and discussion The field survey reveals an altitudinal gradient effect on the valley-type Savanna, with a dominant species of shrubs and herbs plants distribution below an elevation of 1700m, and a significant positive relationship between the SR, Shannon-Wiener, Simpson, and Pielou indices and altitudes. Relatively, the community aboveground biomass did not increase significantly with elevation, which was mainly due to a decreased biomass of herbaceous plants along the elevation. Different regulators of shrub-herbaceous plant species and their functional groups made different elevation patterns of species diversity and aboveground biomass in valley-type Savannas. Herbaceous plants are responsible for maintaining species diversity and ensuring stability in the aboveground biomass of the vegetation. However, the influence of shrubs on aboveground biomass became more pronounced as environmental conditions varied along the altitudinal gradient. Furthermore, species diversity was mainly influenced by soil and climatic environmental factors, whereas community biomass was mainly regulated by plant species or functional groups. The study demonstrates that the spatial pattern of valley-type Savanna was formed as a result of different environmental responses and the productive capacity of retained plant species or functional groups to climate-soil factors, highlighting the value of the Yuanmou dry-hot Valley as a microcosm for exploring the intricate interactions between vegetation evolution and changes in environmental factors.
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Affiliation(s)
- Guangxiong He
- Yunnan Key Laboratory of Plateau Geographical Processes and Environmental Change, Faculty of Geography, Yunnan Normal University, Kunming, Yunnan, China
- Tropical Eco-Agriculture Research Institute, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- Yuanmou Dry-hot Valley Botanical Garden, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- National Soil and Water Conservation Science and Technology Demonstration Park of Yunnan Yuanmou Jinlei, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
| | - Zhengtao Shi
- Yunnan Key Laboratory of Plateau Geographical Processes and Environmental Change, Faculty of Geography, Yunnan Normal University, Kunming, Yunnan, China
| | - Haidong Fang
- Tropical Eco-Agriculture Research Institute, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- Yuanmou Dry-hot Valley Botanical Garden, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- National Soil and Water Conservation Science and Technology Demonstration Park of Yunnan Yuanmou Jinlei, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
| | - Liangtao Shi
- Tropical Eco-Agriculture Research Institute, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- Yuanmou Dry-hot Valley Botanical Garden, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- National Soil and Water Conservation Science and Technology Demonstration Park of Yunnan Yuanmou Jinlei, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
| | - Yandan Wang
- Tropical Eco-Agriculture Research Institute, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- Yuanmou Dry-hot Valley Botanical Garden, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- National Soil and Water Conservation Science and Technology Demonstration Park of Yunnan Yuanmou Jinlei, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
| | - Haozhou Yang
- Tropical Eco-Agriculture Research Institute, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- Yuanmou Dry-hot Valley Botanical Garden, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- National Soil and Water Conservation Science and Technology Demonstration Park of Yunnan Yuanmou Jinlei, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
| | - Bangguo Yan
- Tropical Eco-Agriculture Research Institute, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- Yuanmou Dry-hot Valley Botanical Garden, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- National Soil and Water Conservation Science and Technology Demonstration Park of Yunnan Yuanmou Jinlei, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
| | - Chaolei Yang
- Kunming General Survey of Natural Resources Center, China Geological Survey, Kunming, Yunnan, China
| | - Jianlin Yu
- Tropical Eco-Agriculture Research Institute, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- Yuanmou Dry-hot Valley Botanical Garden, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
- National Soil and Water Conservation Science and Technology Demonstration Park of Yunnan Yuanmou Jinlei, Yunnan Academy of Agricultural Sciences, Yuanmou, Yunnan, China
| | - Qiaoling Liang
- Yunnan Key Laboratory of Plateau Geographical Processes and Environmental Change, Faculty of Geography, Yunnan Normal University, Kunming, Yunnan, China
| | - Lei Zhao
- Yunnan Key Laboratory of Plateau Geographical Processes and Environmental Change, Faculty of Geography, Yunnan Normal University, Kunming, Yunnan, China
| | - Qin Jiang
- Yunnan Key Laboratory of Plateau Geographical Processes and Environmental Change, Faculty of Geography, Yunnan Normal University, Kunming, Yunnan, China
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Behroozian M, Pierce S, Ejtehadi H, Memariani F, Rafiee F, Joharchi MR. Relative contributions of taxonomic and functional diversity to the assembly of plant communities hosting endemic Dianthus species in a mountain steppe. Sci Rep 2024; 14:5471. [PMID: 38443610 PMCID: PMC10915155 DOI: 10.1038/s41598-024-56099-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 03/01/2024] [Indexed: 03/07/2024] Open
Abstract
Plant community assembly is the outcome of long-term evolutionary events (evident as taxonomic diversity; TD) and immediate adaptive fitness (functional diversity; FD); a balance expected to shift in favour of FD in 'harsh' habitats under intense selection pressures. We compared TD and FD responses along climatic and edaphic gradients for communities of two species (Dianthus pseudocrinitus and D. polylepis) endemic to the montane steppes of the Khorassan-Kopet Dagh floristic province, NE Iran. 75 plots at 15 sites were used to relate TD and FD to environmental gradients. In general, greater TD was associated with variation in soil factors (potassium, lime, organic matter contents), whereas FD was constrained by aridity (drought adaptation). Crucially, even plant communities hosting different subspecies of D. polylepis responded differently to aridity: D. polylepis subsp. binaludensis communities included a variety of broadly stress-tolerant taxa with no clear environmental response, but TD of D. polylepis subsp. polylepis communities was directly related to precipitation, with consistently low FD reflecting a few highly specialized stress-tolerators. Integrating taxonomic and functional diversity metrics is essential to understand the communities hosting even extremely closely related taxa, which respond idiosyncratically to climate and soil gradients.
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Affiliation(s)
| | - Simon Pierce
- Department of Agricultural and Environmental Sciences (DiSAA), University of Milan, Via G. Celoria 2, 20133, Milan, Italy
| | - Hamid Ejtehadi
- Quantitative Plant Ecology and Biodiversity Research Laboratory, Department of Biology, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Farshid Memariani
- Herbarium FUMH, Ferdowsi University of Mashhad, Mashhad, Iran
- Department of Range and Watershed Management, Faculty of Natural Resources and Environment, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Fahime Rafiee
- Quantitative Plant Ecology and Biodiversity Research Laboratory, Department of Biology, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
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David KT, Harrison MC, Opulente DA, LaBella AL, Wolters JF, Zhou X, Shen XX, Groenewald M, Pennell M, Hittinger CT, Rokas A. Saccharomycotina yeasts defy long-standing macroecological patterns. Proc Natl Acad Sci U S A 2024; 121:e2316031121. [PMID: 38412132 PMCID: PMC10927492 DOI: 10.1073/pnas.2316031121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Accepted: 01/24/2024] [Indexed: 02/29/2024] Open
Abstract
The Saccharomycotina yeasts ("yeasts" hereafter) are a fungal clade of scientific, economic, and medical significance. Yeasts are highly ecologically diverse, found across a broad range of environments in every biome and continent on earth; however, little is known about what rules govern the macroecology of yeast species and their range limits in the wild. Here, we trained machine learning models on 12,816 terrestrial occurrence records and 96 environmental variables to infer global distribution maps at ~1 km2 resolution for 186 yeast species (~15% of described species from 75% of orders) and to test environmental drivers of yeast biogeography and macroecology. We found that predicted yeast diversity hotspots occur in mixed montane forests in temperate climates. Diversity in vegetation type and topography were some of the greatest predictors of yeast species richness, suggesting that microhabitats and environmental clines are key to yeast diversity. We further found that range limits in yeasts are significantly influenced by carbon niche breadth and range overlap with other yeast species, with carbon specialists and species in high-diversity environments exhibiting reduced geographic ranges. Finally, yeasts contravene many long-standing macroecological principles, including the latitudinal diversity gradient, temperature-dependent species richness, and a positive relationship between latitude and range size (Rapoport's rule). These results unveil how the environment governs the global diversity and distribution of species in the yeast subphylum. These high-resolution models of yeast species distributions will facilitate the prediction of economically relevant and emerging pathogenic species under current and future climate scenarios.
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Affiliation(s)
- Kyle T. David
- Department of Biological Sciences, Vanderbilt University, Nashville, TN37235
- Evolutionary Studies Initiative, Vanderbilt University, Nashville, TN37235
| | - Marie-Claire Harrison
- Department of Biological Sciences, Vanderbilt University, Nashville, TN37235
- Evolutionary Studies Initiative, Vanderbilt University, Nashville, TN37235
| | - Dana A. Opulente
- Laboratory of Genetics, J. F. Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy (DOE) Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI53726
- Department of Biology, Villanova University, Villanova, PA19085
| | - Abigail L. LaBella
- Department of Biological Sciences, Vanderbilt University, Nashville, TN37235
- Evolutionary Studies Initiative, Vanderbilt University, Nashville, TN37235
- Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC28223
| | - John F. Wolters
- Laboratory of Genetics, J. F. Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy (DOE) Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI53726
| | - Xiaofan Zhou
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Center, South China Agricultural University, Guangzhou510642, China
| | - Xing-Xing Shen
- Key Laboratory of Biology of Crop Pathogens and Insects of Zhejiang Province, Institute of Insect Sciences, Zhejiang University, Hangzhou310058, China
| | | | - Matt Pennell
- Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA90089
- Department of Biological Sciences, University of Southern California, Los Angeles, CA90089
| | - Chris Todd Hittinger
- Laboratory of Genetics, J. F. Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy (DOE) Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI53726
| | - Antonis Rokas
- Department of Biological Sciences, Vanderbilt University, Nashville, TN37235
- Evolutionary Studies Initiative, Vanderbilt University, Nashville, TN37235
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Wu Y, Yang Z, Chen S, Sui M, Zhang G, Liu Q, Chen D, Ding F, Zang L. How do species richness and its component dependence vary along the natural restoration in extremely heterogeneous forest ecosystems? JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 354:120265. [PMID: 38382441 DOI: 10.1016/j.jenvman.2024.120265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 10/17/2023] [Accepted: 01/30/2024] [Indexed: 02/23/2024]
Abstract
Giant habitat heterogeneity is an important factor contributing to the high species richness (SR) in karst forests. Yet, the driving factor behind the alterations in SR patterns during natural restoration remains unclear. In this study, we established the forest dynamics plots along the natural restoration sequence (including shrub-tree mixed forest stage (SC), secondary forest stage (SG) and old-growth forest sage (OG)) in degraded karst forests to compare the SR and the dependence on its components (including total community abundance, species abundance distribution (SAD), and conspecific spatial aggregation (CSA)) among stages of natural restoration. By evaluating the degree of contribution of the components to local SR and rarefied SR, we found that the SG exhibited the highest local SR, while the rarefied SR remained increasing along the restoration sequence after controlling the sample size. At SC-SG stage, SAD and CSA contributed negatively to the differences in SR, while abundance made a positive contribution to SR differences. At SG-OG, abundance contributed positively to the difference in SR at all scales, while SAD contributed negatively at small scales. No significant contribution of CSA was found at observed scales. In addition, local SR varied more significantly with PIE than with abundance. Our research emphasizes the importance of eliminating the influence of abundance on species richness in forest ecology and management, as well as the significance of separately evaluating the components that shape the diversity patterns.
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Affiliation(s)
- Yuhang Wu
- Research Center of Forest Ecology, Collage of Forestry, Guizhou University, Guiyang, Guizhou, 550025, China
| | - Zeyu Yang
- Research Center of Forest Ecology, Collage of Forestry, Guizhou University, Guiyang, Guizhou, 550025, China
| | - Shiren Chen
- Research Center of Forest Ecology, Collage of Forestry, Guizhou University, Guiyang, Guizhou, 550025, China
| | - Mingzhen Sui
- Research Center of Forest Ecology, Collage of Forestry, Guizhou University, Guiyang, Guizhou, 550025, China; Guizhou Libo Karst Forest Ecosystem National Observation and Research Station, National Forestry and Grassland Administration, Libo, Guizhou, 558400, China
| | - Guangqi Zhang
- Research Center of Forest Ecology, Collage of Forestry, Guizhou University, Guiyang, Guizhou, 550025, China; Guizhou Libo Karst Forest Ecosystem National Observation and Research Station, National Forestry and Grassland Administration, Libo, Guizhou, 558400, China
| | - Qingfu Liu
- Research Center of Forest Ecology, Collage of Forestry, Guizhou University, Guiyang, Guizhou, 550025, China; Guizhou Libo Karst Forest Ecosystem National Observation and Research Station, National Forestry and Grassland Administration, Libo, Guizhou, 558400, China
| | - Danmei Chen
- Research Center of Forest Ecology, Collage of Forestry, Guizhou University, Guiyang, Guizhou, 550025, China; Guizhou Libo Karst Forest Ecosystem National Observation and Research Station, National Forestry and Grassland Administration, Libo, Guizhou, 558400, China
| | - Fangjun Ding
- Guizhou Libo Karst Forest Ecosystem National Observation and Research Station, National Forestry and Grassland Administration, Libo, Guizhou, 558400, China
| | - Lipeng Zang
- Research Center of Forest Ecology, Collage of Forestry, Guizhou University, Guiyang, Guizhou, 550025, China; Guizhou Libo Karst Forest Ecosystem National Observation and Research Station, National Forestry and Grassland Administration, Libo, Guizhou, 558400, China.
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31
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Zhang X, Dai H, Huang Y, Liu K, Li X, Zhang S, Fu S, Jiao S, Chen C, Dong B, Yang Z, Cui Y, Li H, Liu S. Species pool, local assembly processes: Disentangling the mechanisms determining bacterial α- and β-diversity during forest secondary succession. Mol Ecol 2024; 33:e17241. [PMID: 38078555 DOI: 10.1111/mec.17241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 11/27/2023] [Indexed: 02/12/2024]
Abstract
Across ecology, and particularly within microbial ecology, there is limited understanding how the generation and maintenance of diversity. Although recent work has shown that both local assembly processes and species pools are important in structuring microbial communities, the relative contributions of these mechanisms remain an important question. Moreover, the roles of local assembly processes and species pools are drastically different when explicitly considering the potential for saturation or unsaturation, yet this issue is rarely addressed. Thus, we established a conceptual model that incorporated saturation theory into the microbiological domain to advance the understanding of mechanisms controlling soil bacterial diversity during forest secondary succession. Conceptual model hypotheses were tested by coupling soil bacterial diversity, local assembly processes and species pools using six different forest successional chronosequences distributed across multiple climate zones. Consistent with the unsaturated case proposed in our conceptual framework, we found that species pool consistently affected α-diversity, even while local assembly processes on local richness operate. In contrast, the effects of species pool on β-diversity disappeared once local assembly processes were taken into account, and changes in environmental conditions during secondary succession led to shifts in β-diversity through mediation of the strength of heterogeneous selection. Overall, this study represents one of the first to demonstrate that most local bacterial communities might be unsaturated, where the effect of species pool on α-diversity is robust to the consideration of multiple environmental influences, but β-diversity is constrained by environmental selection.
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Affiliation(s)
- Xiao Zhang
- College of Forestry, Northwest A&F University, Yangling, China
- Key Laboratory of Geospatial Technology for the Middle and Lower Yellow River Regions, The College of Geography and Environmental Science, Henan University, Kaifeng, China
- Qinling National Forest Research Station, Ningshan, China
| | - Handan Dai
- Key Laboratory of Geospatial Technology for the Middle and Lower Yellow River Regions, The College of Geography and Environmental Science, Henan University, Kaifeng, China
| | - Yongtao Huang
- Key Laboratory of Geospatial Technology for the Middle and Lower Yellow River Regions, The College of Geography and Environmental Science, Henan University, Kaifeng, China
| | - Kuan Liu
- Institute of Health Policy, Management and Evaluation, University of Toronto, Toronto, Ontario, Canada
| | - Xingang Li
- College of Forestry, Northwest A&F University, Yangling, China
| | - Shuoxin Zhang
- College of Forestry, Northwest A&F University, Yangling, China
- Qinling National Forest Research Station, Ningshan, China
| | - Shenglei Fu
- Key Laboratory of Geospatial Technology for the Middle and Lower Yellow River Regions, The College of Geography and Environmental Science, Henan University, Kaifeng, China
| | - Shuo Jiao
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, China
| | - Chunbo Chen
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography Chinese Academy of Sciences, Urumqi, China
| | - Biao Dong
- Key Laboratory of Geospatial Technology for the Middle and Lower Yellow River Regions, The College of Geography and Environmental Science, Henan University, Kaifeng, China
| | - Zhu Yang
- Key Laboratory of Geospatial Technology for the Middle and Lower Yellow River Regions, The College of Geography and Environmental Science, Henan University, Kaifeng, China
| | - Yang Cui
- Key Laboratory of Geospatial Technology for the Middle and Lower Yellow River Regions, The College of Geography and Environmental Science, Henan University, Kaifeng, China
| | - Huan Li
- School of Public Health, Lanzhou University, Lanzhou, China
| | - Shirong Liu
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China
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32
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Rogers AM, Yong RQY, Holden MH. The house of a thousand species: The untapped potential of comprehensive biodiversity censuses of urban properties. Ecology 2024; 105:e4225. [PMID: 38038234 DOI: 10.1002/ecy.4225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 10/19/2023] [Accepted: 11/10/2023] [Indexed: 12/02/2023]
Affiliation(s)
- Andrew M Rogers
- School of the Environment, The University of Queensland, Brisbane, Queensland, Australia
| | - Russell Q-Y Yong
- Water Research Group, Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa
| | - Matthew H Holden
- School of Mathematics and Physics, The University of Queensland, Brisbane, Queensland, Australia
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33
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Pironon S, Ondo I, Diazgranados M, Allkin R, Baquero AC, Cámara-Leret R, Canteiro C, Dennehy-Carr Z, Govaerts R, Hargreaves S, Hudson AJ, Lemmens R, Milliken W, Nesbitt M, Patmore K, Schmelzer G, Turner RM, van Andel TR, Ulian T, Antonelli A, Willis KJ. The global distribution of plants used by humans. Science 2024; 383:293-297. [PMID: 38236975 DOI: 10.1126/science.adg8028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Accepted: 12/18/2023] [Indexed: 01/23/2024]
Abstract
Plants sustain human life. Understanding geographic patterns of the diversity of species used by people is thus essential for the sustainable management of plant resources. Here, we investigate the global distribution of 35,687 utilized plant species spanning 10 use categories (e.g., food, medicine, material). Our findings indicate general concordance between utilized and total plant diversity, supporting the potential for simultaneously conserving species diversity and its contributions to people. Although Indigenous lands across Mesoamerica, the Horn of Africa, and Southern Asia harbor a disproportionate diversity of utilized plants, the incidence of protected areas is negatively correlated with utilized species richness. Finding mechanisms to preserve areas containing concentrations of utilized plants and traditional knowledge must become a priority for the implementation of the Kunming-Montreal Global Biodiversity Framework.
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Affiliation(s)
- S Pironon
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - I Ondo
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - M Diazgranados
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- International Plant Science Center, New York Botanical Garden, New York, NY, USA
| | - R Allkin
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - A C Baquero
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - R Cámara-Leret
- Department of Systematic and Evolutionary Botany, University of Zurich, Switzerland
| | - C Canteiro
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - Z Dennehy-Carr
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- Herbarium, School of Biological Sciences, University of Reading, Whiteknights, UK
| | - R Govaerts
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - S Hargreaves
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - A J Hudson
- Royal Botanic Gardens, Kew, Wakehurst, Ardingly, UK
- Botanic Gardens Conservation International, Richmond, UK
| | - R Lemmens
- Wageningen University and Research, Wageningen, Netherlands
| | - W Milliken
- Royal Botanic Gardens, Kew, Wakehurst, Ardingly, UK
| | - M Nesbitt
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- Department of Geography, Royal Holloway, University of London, Egham, UK
- Institute of Archaeology, University College London, London, UK
| | - K Patmore
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - G Schmelzer
- Wageningen University and Research, Wageningen, Netherlands
| | - R M Turner
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - T R van Andel
- Wageningen University and Research, Wageningen, Netherlands
- Naturalis Biodiversity Center, Leiden, Netherlands
| | - T Ulian
- Royal Botanic Gardens, Kew, Wakehurst, Ardingly, UK
- Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
| | - A Antonelli
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- Gothenburg Global Biodiversity Centre, Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
- Department of Biology, University of Oxford, Oxford, UK
| | - K J Willis
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- Department of Biology, University of Oxford, Oxford, UK
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Sun S, Zhang Y, Wang N, Yang W, Zhai Y, Wang H, Fan P, You C, Zheng P, Wang R. Changing effects of energy and water on the richness distribution pattern of the Quercus genus in China. FRONTIERS IN PLANT SCIENCE 2024; 15:1301395. [PMID: 38298826 PMCID: PMC10827969 DOI: 10.3389/fpls.2024.1301395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/24/2023] [Accepted: 01/02/2024] [Indexed: 02/02/2024]
Abstract
Climate varies along geographic gradients, causing spatial variations in the effects of energy and water on species richness and the explanatory power of different climatic factors. Species of the Quercus genus are important tree species in China with high ecological and socioeconomic value. To detect whether the effects of energy and water on species richness change along climatic gradients, this study built geographically weighted regression models based on species richness and climatic data. Variation partition analysis and hierarchical partitioning analysis were used to further explore the main climatic factors shaping the richness distribution pattern of Quercus in China. The results showed that Quercus species were mainly distributed in mountainous areas of southwestern China. Both energy and water were associated with species richness, with global slopes of 0.17 and 0.14, respectively. The effects of energy and water on species richness gradually increased as energy and water in the environment decreased. The interaction between energy and water altered the effect of energy, and in arid regions, the effects of energy and water were relatively stronger. Moreover, energy explained more variation in species richness in both the entire study area (11.5%) and different climate regions (up to 19.4%). The min temperature of coldest month was the main climatic variable forming the richness distribution pattern of Quercus in China. In conclusion, cold and drought are the critical climatic factors limiting the species richness of Quercus, and climate warming will have a greater impact in arid regions. These findings are important for understanding the biogeographic characteristics of Quercus and conserving biodiversity in China.
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Affiliation(s)
- Shuxia Sun
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Yang Zhang
- Department of Statistics and Actuarial Science, Northern Illinois University, Dekalb, IL, United States
| | - Naixian Wang
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Wenjun Yang
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Yinuo Zhai
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Hui Wang
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Peixian Fan
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Chao You
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Peiming Zheng
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Renqing Wang
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
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35
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Rossi C, Byrne JG, Christiaen C. Breaking the ESG rating divergence: An open geospatial framework for environmental scores. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 349:119477. [PMID: 37944316 DOI: 10.1016/j.jenvman.2023.119477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Revised: 07/11/2023] [Accepted: 10/18/2023] [Indexed: 11/12/2023]
Abstract
Information about a company's environmental, social and governance (ESG) performance has become increasingly important in the decision-making process of financial institutions. The financial implications of environmental challenges (e.g. water stress), negative social impacts (e.g. health impacts in local communities) or poor corporate governance (e.g. breaching legislation) all continue to increase. Accordingly, there is a need for financial institutions to incorporate information on ESG risks, opportunities and impacts in decisions that relate to risk management, investments, credit, strategy, and reporting. ESG information is typically disseminated through ESG ratings, which combine the three constituents into a single rating, or ascribe them separate scores. The compilation of ESG ratings and the identification of appropriate data sources is an inherently complex process; as such, there is no single standard for data collection or reporting. This has led to a divergence in the underlying data sources used by different rating providers, as well as in the determination of factors that are deemed worthy of measurement in the first place. For example, when assessing a company's environmental impact, one rating provider may rely on company-provided data, while another may incorporate independent third-party assessments. Unfortunately, there is currently no clear mechanism for effectively resolving such disagreements to establish a standardised approach to ESG rating assessments. However, geospatial data and analyses offer several key advantages for ESG assessments, including consistency, the potential for enhanced accuracy, and the ability to identify and assess environmental impacts at a detailed physical asset level, in addition to evaluating the broader spatial context. By incorporating geospatial information (obtained through manually processing remotely sensed data, or by using existing products) rating methodologies can be improved, and disparities can be addressed more effectively. This would enable a more comprehensive understanding of the environmental considerations of ESG assessments, promoting a more informed and precise decision-making process. Within this context, a few institutions (e.g. the University of Oxford, the WWF, and a few others) are pioneering thought leadership around spatial finance, including the assessment of ESG issues utilising geospatial intelligence, but there are no consistent frameworks for incorporating geospatial data into ESG ratings and analysis. This paper explores the opportunity for such a geospatial environmental scoring framework, defining a variety of methods in which open data with broad geographic coverage could be incorporated into ESG analysis, generalisable to a range of assets and sectors. The proposed framework is organised into two categories: localised effects, which directly impact the immediate vicinity of an asset, and delocalised effects, which contribute to global climate change and atmospheric pollution. Sub-scores are defined within these categories, which capture both the localised effects on land use, biodiversity, soils, and hydrology, and the global impacts resulting from atmospheric emissions. The approaches for handling geospatial data to generate both these sub-scores and the final E-score are presented, including a test case, and the complete methodology is made available in open repositories.
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Affiliation(s)
- Cristian Rossi
- UK Centre for Greening Finance and Investment (CGFI), Oxford, UK; University of Oxford, Oxford, UK; Satellite Applications Catapult, Harwell Campus, UK.
| | | | - Christophe Christiaen
- UK Centre for Greening Finance and Investment (CGFI), Oxford, UK; University of Oxford, Oxford, UK
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Núñez-Flores M, Solórzano A, Avaria-Llautureo J, Gomez-Uchida D, López-González PJ. Diversification dynamics of a common deep-sea octocoral family linked to the Paleocene-Eocene thermal maximum. Mol Phylogenet Evol 2024; 190:107945. [PMID: 37863452 DOI: 10.1016/j.ympev.2023.107945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 10/16/2023] [Accepted: 10/17/2023] [Indexed: 10/22/2023]
Abstract
The deep-sea has experienced dramatic changes in physical and chemical variables in the geological past. However, little is known about how deep-sea species richness responded to such changes over time and space. Here, we studied the diversification dynamics of one of the most diverse octocorallian families inhabiting deep sea benthonic environments worldwide and sustaining highly diverse ecosystems, Primnoidae. A newly dated species-level phylogeny was constructed to infer their ancestral geographic locations and dispersal rates initially. Then, we tested whether their global and regional (the Southern Ocean) diversification dynamics were mediated by dispersal rate and abiotic factors as changes in ocean geochemistry. Finally, we tested whether primnoids showed changes in speciation and extinction at discrete time points. Our results suggested primnoids likely originated in the southwestern Pacific Ocean during the Lower Cretaceous ∼112 Ma, with further dispersal after the physical separation of continental landmasses along the late Mesozoic and Cenozoic. Only the speciation rate of the Southern Ocean primnoids showed a significant correlation to ocean chemistry. Moreover, the Paleocene-Eocene thermal maximum marked a significant increase in the diversification of primnoids at global and regional scales. Our results provide new perspectives on the macroevolutionary and biogeographic patterns of an ecologically important benthic organism typically found in deep-sea environments.
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Affiliation(s)
- Mónica Núñez-Flores
- Centro de Investigación de Estudios Avanzados del Maule, Vicerrectoría de Investigación y Postgrado Universidad Católica del Maule, Talca, Chile; Laboratorio Ecología de Abejas, Departamento de Biología y Química, Facultad de Ciencias Básicas, Universidad Católica del Maule, Talca, Chile.
| | - Andrés Solórzano
- Escuela de Geología, Departamento de Biología y Química, Facultad de Ciencias Básicas, Universidad Católica del Maule, Talca, Chile
| | | | - Daniel Gomez-Uchida
- Genomics in Ecology, Evolution, and Conservation Laboratory (GEECLAB), Department of Zoology, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción, Chile
| | - Pablo J López-González
- Biodiversidad y Ecología Acuática. Departamento de Zoología, Facultad de Biología, Universidad de Sevilla, Reina Mercedes 6, 41012 Sevilla, Spain
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Huang J, Yu R, Zang R. Differences in functional niche hypervolume among four types of forest vegetation and their environmental determinants across various climatic regions in China. FRONTIERS IN PLANT SCIENCE 2023; 14:1243209. [PMID: 38116149 PMCID: PMC10728642 DOI: 10.3389/fpls.2023.1243209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 11/23/2023] [Indexed: 12/21/2023]
Abstract
Functional traits play an important role in studying the functional niche in plant communities. However, it remains unclear whether the functional niches of typical forest plant communities in different climatic regions based on functional traits are consistent. Here, we present data for 215 woody species, encompassing 11 functional traits related to three fundamental niche dimensions (leaf economy, mechanical support, and reproductive phenology). These data were collected from forests across four climatic zones in China (tropical, subtropical, warm-temperate, and cold-temperate) or sourced from the literature. We calculated the functional niche hypervolume, representing the range of changes in the multidimensional functional niche. This metric quantifies how many functional niche spaces are occupied by existing plants in the community. Subsequently, we analyzed differences in functional niche hypervolume and their associated environmental factors across different types of forest vegetation. The results indicate that the functional niche hypervolume and the degree of forest vegetation overlap decrease with increasing latitude (e.g., from tropical rainforest to cold temperate coniferous forest). The total explanatory power of both climate and soil factors on the variation in functional niche hypervolume was 50%, with climate factors exhibiting a higher explanatory power than soil factors. Functional niche hypervolume is positively correlated with climate factors (annual mean temperature and annual precipitation) and negatively correlated with soil factors (soil pH, soil organic matter content, soil total nitrogen content, and soil total phosphorus content). Among these factors, annual mean temperature, soil pH, and soil total nitrogen content most significantly affect the difference in functional niche hypervolume among forest vegetation. Our study emphasizes the significant variation in the functional niche hypervolume among typical forest vegetation in China.
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Affiliation(s)
- Jihong Huang
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
| | - Ruoyun Yu
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, Hainan, China
| | - Runguo Zang
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
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Martínez-Núñez C, Martínez-Prentice R, García-Navas V. Protected area coverage of vulnerable regions to conserve functional diversity of birds. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2023; 37:e14131. [PMID: 37259609 DOI: 10.1111/cobi.14131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Revised: 05/21/2023] [Accepted: 05/23/2023] [Indexed: 06/02/2023]
Abstract
Global-change drivers are increasing the rates of species extinction worldwide, posing a serious threat to ecosystem functioning. Preserving the functional diversity of species is currently a priority to mitigate abrupt biodiversity loss in the coming decades. Therefore, understanding what factors better predict functional diversity loss in bird assemblages at a global scale and how existing protected areas cover the most vulnerable regions is of key importance for conservation. We examined the environmental factors associated with the risk of functional diversity loss under 3 scenarios of bird species extinction based on species distribution range size, generation length, and International Union for the Conservation of Nature conservation status. Then, we identified regions that deserve special conservation focus. We also assessed how efficiently extant terrestrial protected areas preserve particularly vulnerable bird assemblages based on predicted scenarios of extinction risk. The vulnerability of bird functional diversity increased as net primary productivity, land-use diversity, mean annual temperature, and elevation decreased. Low values for these environmental factors were associated with a higher risk of functional diversity loss worldwide through two mechanisms: one independent of species richness that affects assemblages with low levels of niche packing and high functional dissimilarity among species, and the other that affects assemblages with low species richness and high rates of extinction. Existing protected areas ineffectively safeguarded regions with a high risk of losing functional diversity in the next decades. The global predictors and the underlying mechanisms of functional vulnerability in bird assemblages we identified can inform strategies aimed at preserving bird-driven ecological functions worldwide.
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Affiliation(s)
- Carlos Martínez-Núñez
- Department of Integrative Ecology, Estación Biológica de Doñana EBD (CSIC), Seville, Spain
| | - Ricardo Martínez-Prentice
- Institute of Agriculture and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
| | - Vicente García-Navas
- Department of Integrative Ecology, Estación Biológica de Doñana EBD (CSIC), Seville, Spain
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
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Flinte V, Pádua DG, Durand EM, Hodgin C, Khattar G, da Silveira LFL, Fernandes DRR, Sääksjärvi IE, Monteiro RF, Macedo MV, Mayhew PJ. Variation in a Darwin Wasp (Hymenoptera: Ichneumonidae) Community along an Elevation Gradient in a Tropical Biodiversity Hotspot: Implications for Ecology and Conservation. INSECTS 2023; 14:861. [PMID: 37999060 PMCID: PMC10671876 DOI: 10.3390/insects14110861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 10/23/2023] [Accepted: 10/30/2023] [Indexed: 11/25/2023]
Abstract
Understanding how biodiversity varies from place to place is a fundamental goal of ecology and an important tool for halting biodiversity loss. Parasitic wasps (Hymenoptera) are a diverse and functionally important animal group, but spatial variation in their diversity is poorly understood. We survey a community of parasitic wasps (Ichneumonidae: Pimplinae) using Malaise traps up a mountain in the Brazilian Atlantic Rainforest, and relate the catch to biotic and abiotic habitat characteristics. We find high species richness compared with previous similar studies, with abundance, richness, and diversity peaking at low to intermediate elevation. There is a marked change in community composition with elevation. Habitat factors strongly correlated with elevation also strongly predict changes in the pimpline community, including temperature as well as the density of bamboo, lianas, epiphytes, small trees, and herbs. These results identify several possible surrogates of pimpline communities in tropical forests, which could be used as a tool in conservation. They also contribute to the growing evidence for a typical latitudinal gradient in ichneumonid species richness, and suggest that low to medium elevations in tropical regions will sometimes conserve the greatest number of species locally, but to conserve maximal biodiversity, a wider range of elevations should also be targeted.
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Affiliation(s)
- Vivian Flinte
- Departamento de Ecologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro, C.P. 68020, Rio de Janeiro 21941-590, Brazil; (V.F.); (G.K.); (L.F.L.d.S.); (R.F.M.); (M.V.M.)
| | - Diego G. Pádua
- Programa de Pós-Graduação em Entomologia, Instituto Nacional de Pesquisas da Amazônia, Manaus 69067-375, Brazil; (D.G.P.); (D.R.R.F.)
- Centro de Investigación de Estudios Avanzados del Maule, Vicerrectoría de Investigación y Postgrado, Universidad Católica del Maule, Avenida San Miguel, Talca 3605, Chile
| | - Emily M. Durand
- Department of Biology, University of York, Heslington, York YO10 5DD, UK; (E.M.D.); (C.H.)
| | - Caitlin Hodgin
- Department of Biology, University of York, Heslington, York YO10 5DD, UK; (E.M.D.); (C.H.)
| | - Gabriel Khattar
- Departamento de Ecologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro, C.P. 68020, Rio de Janeiro 21941-590, Brazil; (V.F.); (G.K.); (L.F.L.d.S.); (R.F.M.); (M.V.M.)
- Laboratory of Community and Quantitative Ecology, Department of Biology, Concordia University, Montreal, QC H4B 1R6, Canada
| | - Luiz Felipe L. da Silveira
- Departamento de Ecologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro, C.P. 68020, Rio de Janeiro 21941-590, Brazil; (V.F.); (G.K.); (L.F.L.d.S.); (R.F.M.); (M.V.M.)
- Biology Department, Western Carolina University, 1 University Drive, Cullowhee, NC 28723, USA
| | - Daniell R. R. Fernandes
- Programa de Pós-Graduação em Entomologia, Instituto Nacional de Pesquisas da Amazônia, Manaus 69067-375, Brazil; (D.G.P.); (D.R.R.F.)
| | | | - Ricardo F. Monteiro
- Departamento de Ecologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro, C.P. 68020, Rio de Janeiro 21941-590, Brazil; (V.F.); (G.K.); (L.F.L.d.S.); (R.F.M.); (M.V.M.)
| | - Margarete V. Macedo
- Departamento de Ecologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro, C.P. 68020, Rio de Janeiro 21941-590, Brazil; (V.F.); (G.K.); (L.F.L.d.S.); (R.F.M.); (M.V.M.)
| | - Peter J. Mayhew
- Department of Biology, University of York, Heslington, York YO10 5DD, UK; (E.M.D.); (C.H.)
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Gardner AS, Trew BT, Maclean IMD, Sharma MD, Gaston KJ. Wilderness areas under threat from global redistribution of agriculture. Curr Biol 2023; 33:4721-4726.e2. [PMID: 37863061 DOI: 10.1016/j.cub.2023.09.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Revised: 07/13/2023] [Accepted: 09/05/2023] [Indexed: 10/22/2023]
Abstract
Agriculture expansion is already the primary cause of terrestrial biodiversity loss globally1,2; yet, to meet the demands of growing human populations, production is expected to have to double by 2050.3 The challenge of achieving expansion without further detriment to the environment and biodiversity is huge and potentially compounded by climate change, which may necessitate shifting agriculture zones poleward to regions with more suitable climates,4 threatening species or areas of conservation priority.5,6,7 However, the possible future overlap between agricultural suitability and wilderness areas, increasingly recognized for significant biodiversity, cultural, and climate regulation values, has not yet been examined. Here, using high-resolution climate data, we model global present and future climate suitability for 1,708 crop varieties. We project, over the next 40 years, that 2.7 million km2 of land within wilderness will become newly suitable for agriculture, equivalent to 7% of the total wilderness area outside Antarctica. The increase in potentially cultivable land in wilderness areas is particularly acute at higher latitudes in the northern hemisphere, where 76.3% of newly suitable land is currently wilderness, equivalent to 10.2% of the total wilderness area. Our results highlight an important and previously unidentified possible consequence of the disproportionate warming known to be occurring in high northern latitudes. Because we find that, globally, 72.0% of currently cultivable land is predicted to experience a net loss in total crop diversity, agricultural expansion is a major emerging threat to wilderness. Without protection, the vital integrity of these valuable areas could be irreversibly lost.
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Affiliation(s)
- Alexandra S Gardner
- Environment and Sustainability Institute, University of Exeter, Penryn, Cornwall TR10 9FE, UK.
| | - Brittany T Trew
- Environment and Sustainability Institute, University of Exeter, Penryn, Cornwall TR10 9FE, UK
| | - Ilya M D Maclean
- Environment and Sustainability Institute, University of Exeter, Penryn, Cornwall TR10 9FE, UK.
| | - Manmohan D Sharma
- Centre for Ecology and Conservation, University of Exeter, Penryn, Cornwall TR10 9FE, UK
| | - Kevin J Gaston
- Environment and Sustainability Institute, University of Exeter, Penryn, Cornwall TR10 9FE, UK
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de Oliveira CR, Gonçalves-Sousa JG, de Carvalho EFF, Ávila RW, Borges-Nojosa DM. Effect of altitude and spatial heterogeneity on the host-parasite relationship in anurans from a remnant humid forest in the brazilian semiarid. Parasitol Res 2023; 122:2651-2666. [PMID: 37707610 DOI: 10.1007/s00436-023-07965-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 09/02/2023] [Indexed: 09/15/2023]
Abstract
In the present study, we investigated the effect of habitat heterogeneity, elevation gradient, and phylogenetic distance of host species on the abundance and richness of anuran endoparasites, assuming that parasites follow the distribution of their hosts independently of environmental variation. We collected 192 anurans distributed in three altitude ranges: 100-200 m, 400-500 m, and 700-800 m. We performed discriminant principal component analysis to analyze the interrelationships between environmental heterogeneity and the distribution of parasite and host species in the formation of species groups in each altitude range. We estimated the niche width and parasite overlap, using host species as a variable, and assessed whether parasite abundance is more influenced by historical (distance host phylogeny) or ecological effects in each altitude category and overall. Finally, we use network analyses to understand how interactions between parasites and hosts are formed along the altitude gradient. We found 22 parasite species, and the overall prevalence of infection was 74%. In our study, we did not identify environmental (altitude gradients and heterogeneity) or phylogenetic effects acting on the parasite species diversity. Overall, our results suggest that the parasites are distributed following the dispersal of their hosts and are dispersed among most anuran species.
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Affiliation(s)
- Cicero Ricardo de Oliveira
- Graduate Program in Ecology and Natural Resources, Federal University of Ceará, Block 902, Science Center, PICI Campus, Ceará, Brazil.
- Regional Ophiology Center, Federal University of Ceará, Block 905, Science Center, PICI Campus, Ceará, Brazil.
| | - José Guilherme Gonçalves-Sousa
- Regional Ophiology Center, Federal University of Ceará, Block 905, Science Center, PICI Campus, Ceará, Brazil
- Laboratory of Biology and Ecology of Wild Animals, Federal University of Cariri, Educators Training Institute, Ceará, Brazil
| | - Elvis Franklin Fernandes de Carvalho
- Graduate Program in Ecology and Natural Resources, Federal University of Ceará, Block 902, Science Center, PICI Campus, Ceará, Brazil
- Regional Ophiology Center, Federal University of Ceará, Block 905, Science Center, PICI Campus, Ceará, Brazil
| | - Robson Waldemar Ávila
- Graduate Program in Ecology and Natural Resources, Federal University of Ceará, Block 902, Science Center, PICI Campus, Ceará, Brazil
- Regional Ophiology Center, Federal University of Ceará, Block 905, Science Center, PICI Campus, Ceará, Brazil
| | - Diva Maria Borges-Nojosa
- Graduate Program in Ecology and Natural Resources, Federal University of Ceará, Block 902, Science Center, PICI Campus, Ceará, Brazil
- Regional Ophiology Center, Federal University of Ceará, Block 905, Science Center, PICI Campus, Ceará, Brazil
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Jin H, Xu J, Peng Y, Xin J, Peng N, Li Y, Huang J, Zhang R, Li C, Wu Y, Gong B, Wang R. Impacts of landscape patterns on plant species diversity at a global scale. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 896:165193. [PMID: 37406683 DOI: 10.1016/j.scitotenv.2023.165193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2023] [Revised: 06/23/2023] [Accepted: 06/26/2023] [Indexed: 07/07/2023]
Abstract
Landscape patterns are important drivers of biodiversity. Owing to differences in vegetation types, sampling methods, diversity measures, spatial scales, and landscape levels, the impact of landscape patterns on biodiversity remains widely debated. Using a global standardized plant community database and land use and land cover maps at 30-m resolution, for the period 1990-2017, we calculated plant species α- and β-diversity, and landscape metrics at patch- and landscape-levels, and discerned the direct and indirect impacts of landscape patterns on plant species diversity based on environmental factors, namely climate, spatial features, and human disturbance. We found that landscape patterns exhibited the main indirect effects, whereas climate factors exhibited dominant direct effects on plant α-diversity via the direct effects of patch patterns and functional traits. With respect to β-diversity, landscape-level patterns exerted more direct than indirect effects. These effects are strongly dependent on scale. Landscape- and patch-level patterns had opposite effects on plant diversity, depending on their composition and spatial structure, demonstrating that their effects could be mediated by one another. The adaptation of plants to landscape patterns is mainly through variations in leaf area, plant height, specific leaf area, stem density, seed biomass, and other seed-dispersal traits, which vary across vegetation types. Our findings highlight the importance of functional traits and diversity in understanding the mechanism by which landscape patterns influence plant species diversity; accordingly, we recommend balancing the spatial structure of patch- and landscape-level patterns to enhance variation in functional traits, and, ultimately, to maintain global plant diversity.
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Affiliation(s)
- Hanni Jin
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Jing Xu
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Yu Peng
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China.
| | - Jiaxun Xin
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Nanyi Peng
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Yanyi Li
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Jijiao Huang
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Ruiqiang Zhang
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Chen Li
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Yimeng Wu
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Bingzhang Gong
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Ronghui Wang
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
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Rahman IU, Hart RE, Afzal A, Iqbal Z, Bussmann RW, Ijaz F, Khan MA, Ali H, Rahman SU, Hashem A, Abd-Allah EF, Sher A, Calixto ES. Vegetation-environment interactions: plant species distribution and community assembly in mixed coniferous forests of Northwestern Himalayas. Sci Rep 2023; 13:17228. [PMID: 37821469 PMCID: PMC10567734 DOI: 10.1038/s41598-023-42272-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Accepted: 09/07/2023] [Indexed: 10/13/2023] Open
Abstract
One of the main goals of ecological studies is to disentangle the dynamics that underlie the spatiotemporal distribution of biodiversity and further functions of the ecosystem. However, due to many ecological and geopolitical reasons, many remote areas with high plant species diversity have not been assessed using newly based analytical approaches for vegetation characterization. Here, we classified and characterized different vegetation types (i.e., major plant communities) based on indicator species and on the influence of different environmental gradients in the Himalayan mixed coniferous forest, Pakistan. For that, we addressed the following questions: Does the vegetation composition of the Himalayan mixed coniferous forest correlate with climatic, topographic, geographic, and edaphic variables? Is it possible to identify plant communities through indicator species in relation to environmental gradients using multivariate approaches? Can this multivariate be helpful for conservation planning? During four consecutive years we assessed the vegetation composition and environmental variables (21 variables divided in geographic, climatic, topographic, and edaphic groups) of 156 50 m-trasects between an elevation of 2000-4000 m. Using newly based analytical approaches for community characterization, we found a total of 218 plant species clustered into four plant communities with the influence of environmental gradients. The highest index of similarity was recorded between Pinus-Cedrus-Viburnum (PCV) and Viburnum-Pinus-Abies (VPA) communities, and the highest index of dissimilarity was recorded between PCV and Abies-Juniperus-Picea (AJP) communities. Among these four communities, highest number of plant species (156 species) was recorded in PCV, maximum alpha diversity (H' = 3.68) was reported in VPA, highest Simpson index (0.961) and Pielou's evenness (0.862) were reported in VPA and AJP. The edaphic gradients (i.e., organic matter, phosphorous, pH and soil texture) and climatic factors (temperature, humidity) were the strongest environmental gradients that were responsible for structuring and hosting the diverse plant communities in mixed coniferous forest. Finally, the Himalayan mixed coniferous structure is more influenced by the spatial turnover beta-diversity process (βsim) than by the species loss (nestedness-resultant, βsne). Our analysis of the vegetation structure along the environmental gradient in the Himalayan mixed coniferous forest supported by sophisticated analytical approaches reveled indicator species groups, which are associated to specific microclimatic zones (i.e., vegetation communities). Within this focus, we side with the view that these results can support conservation planning and management for similar and different areas providing mitigating and preventive measures to reduce potential negative impacts, such as anthropic and climatic.
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Affiliation(s)
- Inayat Ur Rahman
- Department of Botany, Hazara University, Mansehra, 21300, Khyber Pakhtunkhwa, Pakistan.
- William L. Brown Center, Missouri Botanical Garden, P.O. Box 299, St. Louis, MO, 63166-0299, USA.
- Department of Botany, Khushal Khan Khattak University, Karak, 27200, KP, Pakistan.
| | - Robbie E Hart
- William L. Brown Center, Missouri Botanical Garden, P.O. Box 299, St. Louis, MO, 63166-0299, USA
| | - Aftab Afzal
- Department of Botany, Hazara University, Mansehra, 21300, Khyber Pakhtunkhwa, Pakistan.
| | - Zafar Iqbal
- Department of Botany, Hazara University, Mansehra, 21300, Khyber Pakhtunkhwa, Pakistan
| | - Rainer W Bussmann
- Department of Ethnobotany, Institute of Botany, Ilia State University, 1 Botanical Street, 0105, Tbilisi, Georgia
- Department of Botany, State Museum of Natural History, Karlsruhe, Germany
| | - Farhana Ijaz
- Department of Botany, Hazara University, Mansehra, 21300, Khyber Pakhtunkhwa, Pakistan
| | - Muazzam Ali Khan
- Department of Botany, Bacha Khan University, Charsadda, 24460, KP, Pakistan
| | - Hamid Ali
- Department of Biotechnology and Genetic Engineering, Hazara University, Mansehra, 21300, KP, Pakistan
| | - Siddiq Ur Rahman
- Department of Computer Science and Bioinformatics, Khushal Khan Khattak University, Karak, 27200, KP, Pakistan
| | - Abeer Hashem
- Botany and Microbiology Department, College of Science, King Saud University, P.O. Box. 2460, 11451, Riyadh, Saudi Arabia
| | - Elsayed Fathi Abd-Allah
- Department of Plant Production, College of Food and Agriculture Science, King Saud University, 11451, Riyadh, Saudi Arabia
| | - Ali Sher
- Department of Agriculture, Bacha Khan University, Charsadda, KP, Pakistan
| | - Eduardo Soares Calixto
- Department of Biology, University of Missouri St. Louis (UMSL), Saint Louis, MO, USA
- Entomology and Nematology Department, University of Florida, Gainesville, FL, USA
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Huang CW, Ooi JQ, Yau SY. The landscape ecological view of vertebrate species richness in urban areas across biogeographic realms. Sci Rep 2023; 13:16647. [PMID: 37789152 PMCID: PMC10547837 DOI: 10.1038/s41598-023-43896-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 09/29/2023] [Indexed: 10/05/2023] Open
Abstract
Understanding how the spatial arrangement of remnant green spaces in cities complements biodiversity provides an opportunity for synergy between urban development and biological conservation. However, the geography of urbanization is shifting from Europe and North America to Asia and Africa, and more research is needed for fast-growing regions. To understand how shifting urbanization shapes biodiversity patterns, we analyzed the contribution of landscape factors in explaining vertebrate species richness in urban areas across biogeographic realms. We used variation partitioning to quantify and compare the relative importance of landscape factors (composition and configuration) and environmental factors (climate, elevation, and latitude) in explaining vertebrate species richness in landscapes with at least a million inhabitants across biogeographic realms. Our results pointed out that in the Indo-Malayan, the Afrotropical, and the Neotropical realm (on average of 16.46%) and China and India (11.88%), the influence of landscape factors on vertebrate species richness are significantly higher than that of the Palearctic and Nearctic realms (6.48%). Our findings outline the importance of landscape composition and configuration in shaping biodiversity patterns in regions with fast urban growth during the next two decades, such as Africa, Latin America, and Southeastern Asia. We suggest improving land governance and urban planning to construct eco-friendly landscape structures to mitigate biodiversity loss due to urbanization.
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Affiliation(s)
- Chun-Wei Huang
- General Education Center, Ming Chi University of Technology, New Taipei City, 243303, Taiwan.
| | - Jia Qing Ooi
- Department of Geography, National Taiwan University, Taipei, 10617, Taiwan
| | - Si Ying Yau
- Department of Geography, National Taiwan University, Taipei, 10617, Taiwan
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Finn C, Grattarola F, Pincheira-Donoso D. More losers than winners: investigating Anthropocene defaunation through the diversity of population trends. Biol Rev Camb Philos Soc 2023; 98:1732-1748. [PMID: 37189305 DOI: 10.1111/brv.12974] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Revised: 04/26/2023] [Accepted: 04/27/2023] [Indexed: 05/17/2023]
Abstract
The global-scale decline of animal biodiversity ('defaunation') represents one of the most alarming consequences of human impacts on the planet. The quantification of this extinction crisis has traditionally relied on the use of IUCN Red List conservation categories assigned to each assessed species. This approach reveals that a quarter of the world's animal species are currently threatened with extinction, and ~1% have been declared extinct. However, extinctions are preceded by progressive population declines through time that leave demographic 'footprints' that can alert us about the trajectories of species towards extinction. Therefore, an exclusive focus on IUCN conservation categories, without consideration of dynamic population trends, may underestimate the true extent of the processes of ongoing extinctions across nature. In fact, emerging evidence (e.g. the Living Planet Report), reveals a widespread tendency for sustained demographic declines (an average 69% decline in population abundances) of species globally. Yet, animal species are not only declining. Many species worldwide exhibit stable populations, while others are even thriving. Here, using population trend data for >71,000 animal species spanning all five groups of vertebrates (mammals, birds, reptiles, amphibians and fishes) and insects, we provide a comprehensive global-scale assessment of the diversity of population trends across species undergoing not only declines, but also population stability and increases. We show a widespread global erosion of species, with 48% undergoing declines, while 49% and 3% of species currently remain stable or are increasing, respectively. Geographically, we reveal an intriguing pattern similar to that of threatened species, whereby declines tend to concentrate around tropical regions, whereas stability and increases show a tendency to expand towards temperate climates. Importantly, we find that for species currently classed by the IUCN Red List as 'non-threatened', 33% are declining. Critically, in contrast with previous mass extinction events, our assessment shows that the Anthropocene extinction crisis is undergoing a rapid biodiversity imbalance, with levels of declines (a symptom of extinction) greatly exceeding levels of increases (a symptom of ecological expansion and potentially of evolution) for all groups. Our study contributes a further signal indicating that global biodiversity is entering a mass extinction, with ecosystem heterogeneity and functioning, biodiversity persistence, and human well-being under increasing threat.
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Affiliation(s)
- Catherine Finn
- MacroBiodiversity Lab, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, UK
| | - Florencia Grattarola
- Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcká 129, Praha-Suchdol, 165 00, Czech Republic
| | - Daniel Pincheira-Donoso
- MacroBiodiversity Lab, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, UK
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Haight JD, Hall SJ, Fidino M, Adalsteinsson SA, Ahlers AA, Angstmann J, Anthonysamy WJB, Biro E, Collins MK, Dugelby B, Gallo T, Green AM, Hartley L, Jordan MJ, Kay CAM, Lehrer EW, Long RA, MacDougall B, Magle SB, Minier DE, Mowry C, Murray M, Nininger K, Pendergast ME, Remine KR, Ryan T, Salsbury C, Sander HA, Schell CJ, Șekercioğlu ÇH, Shier CJ, Simon KC, St Clair CC, Stankowich T, Stevenson CJ, Wayne L, Will D, Williamson J, Wilson L, Zellmer AJ, Lewis JS. Urbanization, climate and species traits shape mammal communities from local to continental scales. Nat Ecol Evol 2023; 7:1654-1666. [PMID: 37667002 DOI: 10.1038/s41559-023-02166-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Accepted: 07/17/2023] [Indexed: 09/06/2023]
Abstract
Human-driven environmental changes shape ecological communities from local to global scales. Within cities, landscape-scale patterns and processes and species characteristics generally drive local-scale wildlife diversity. However, cities differ in their structure, species pools, geographies and histories, calling into question the extent to which these drivers of wildlife diversity are predictive at continental scales. In partnership with the Urban Wildlife Information Network, we used occurrence data from 725 sites located across 20 North American cities and a multi-city, multi-species occupancy modelling approach to evaluate the effects of ecoregional characteristics and mammal species traits on the urbanization-diversity relationship. Among 37 native terrestrial mammal species, regional environmental characteristics and species traits influenced within-city effects of urbanization on species occupancy and community composition. Species occupancy and diversity were most negatively related to urbanization in the warmer, less vegetated cities. Additionally, larger-bodied species were most negatively impacted by urbanization across North America. Our results suggest that shifting climate conditions could worsen the effects of urbanization on native wildlife communities, such that conservation strategies should seek to mitigate the combined effects of a warming and urbanizing world.
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Affiliation(s)
- Jeffrey D Haight
- School of Life Sciences, Arizona State University, Tempe, AZ, USA.
| | - Sharon J Hall
- School of Life Sciences, Arizona State University, Tempe, AZ, USA
| | - Mason Fidino
- Urban Wildlife Institute, Lincoln Park Zoo, Chicago, IL, USA
| | | | | | | | | | | | | | | | | | - Austin M Green
- School of Biological Sciences, University of Utah, Salt Lake City, UT, USA
| | | | | | - Cria A M Kay
- Urban Wildlife Institute, Lincoln Park Zoo, Chicago, IL, USA
| | | | | | | | - Seth B Magle
- Urban Wildlife Institute, Lincoln Park Zoo, Chicago, IL, USA
| | | | | | - Maureen Murray
- Urban Wildlife Institute, Lincoln Park Zoo, Chicago, IL, USA
| | | | | | | | | | | | | | | | - Çagan H Șekercioğlu
- School of Biological Sciences, University of Utah, Salt Lake City, UT, USA
- Department of Molecular Biology and Genetics, Koç University, Istanbul, Türkiye
| | | | - Kelly C Simon
- Texas Parks and Wildlife Department, Austin, TX, USA
| | | | | | | | - Lisa Wayne
- San Francisco Public Utilities Commission, San Francisco, CA, USA
| | | | | | | | - Amanda J Zellmer
- Occidental College, Los Angeles, CA, USA
- Arroyos & Foothills Conservancy, Pasadena, CA, USA
| | - Jesse S Lewis
- College of Integrative Sciences and Arts, Arizona State University, Mesa, AZ, USA
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47
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Coelho MTP, Barreto E, Rangel TF, Diniz-Filho JAF, Wüest RO, Bach W, Skeels A, McFadden IR, Roberts DW, Pellissier L, Zimmermann NE, Graham CH. The geography of climate and the global patterns of species diversity. Nature 2023; 622:537-544. [PMID: 37758942 PMCID: PMC10584679 DOI: 10.1038/s41586-023-06577-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Accepted: 08/25/2023] [Indexed: 09/29/2023]
Abstract
Climate's effect on global biodiversity is typically viewed through the lens of temperature, humidity and resulting ecosystem productivity1-6. However, it is not known whether biodiversity depends solely on these climate conditions, or whether the size and fragmentation of these climates are also crucial. Here we shift the common perspective in global biodiversity studies, transitioning from geographic space to a climate-defined multidimensional space. Our findings suggest that larger and more isolated climate conditions tend to harbour higher diversity and species turnover among terrestrial tetrapods, encompassing more than 30,000 species. By considering both the characteristics of climate itself and its geographic attributes, we can explain almost 90% of the variation in global species richness. Half of the explanatory power (45%) may be attributed either to climate itself or to the geography of climate, suggesting a nuanced interplay between them. Our work evolves the conventional idea that larger climate regions, such as the tropics, host more species primarily because of their size7,8. Instead, we underscore the integral roles of both the geographic extent and degree of isolation of climates. This refined understanding presents a more intricate picture of biodiversity distribution, which can guide our approach to biodiversity conservation in an ever-changing world.
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Affiliation(s)
- Marco Túlio P Coelho
- Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf, Switzerland.
| | - Elisa Barreto
- Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf, Switzerland
| | - Thiago F Rangel
- Departamento de Ecologia, Universidade Federal de Goiás, Goiânia, Brazil
| | | | - Rafael O Wüest
- Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf, Switzerland
| | - Wilhelmine Bach
- Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf, Switzerland
- Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental System Science, ETH Zürich, Zurich, Switzerland
| | - Alexander Skeels
- Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf, Switzerland
- Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental System Science, ETH Zürich, Zurich, Switzerland
| | - Ian R McFadden
- Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf, Switzerland
- Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental System Science, ETH Zürich, Zurich, Switzerland
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - David W Roberts
- Ecology Department, Montana State University, Bozeman, MT, USA
| | - Loïc Pellissier
- Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf, Switzerland
- Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental System Science, ETH Zürich, Zurich, Switzerland
| | - Niklaus E Zimmermann
- Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf, Switzerland
| | - Catherine H Graham
- Swiss Federal Institute for Forest, Snow and Landscape Research, Birmensdorf, Switzerland
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48
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Fonseca EM, Pelletier TA, Decker SK, Parsons DJ, Carstens BC. Pleistocene glaciations caused the latitudinal gradient of within-species genetic diversity. Evol Lett 2023; 7:331-338. [PMID: 37829497 PMCID: PMC10565891 DOI: 10.1093/evlett/qrad030] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Revised: 06/26/2023] [Accepted: 07/10/2023] [Indexed: 10/14/2023] Open
Abstract
Intraspecific genetic diversity is a key aspect of biodiversity. Quaternary climatic change and glaciation influenced intraspecific genetic diversity by promoting range shifts and population size change. However, the extent to which glaciation affected genetic diversity on a global scale is not well established. Here we quantify nucleotide diversity, a common metric of intraspecific genetic diversity, in more than 38,000 plant and animal species using georeferenced DNA sequences from millions of samples. Results demonstrate that tropical species contain significantly more intraspecific genetic diversity than nontropical species. To explore potential evolutionary processes that may have contributed to this pattern, we calculated summary statistics that measure population demographic change and detected significant correlations between these statistics and latitude. We find that nontropical species are more likely to deviate from neutral expectations, indicating that they have historically experienced dramatic fluctuations in population size likely associated with Pleistocene glacial cycles. By analyzing the most comprehensive data set to date, our results imply that Quaternary climate perturbations may be more important as a process driving the latitudinal gradient in species richness than previously appreciated.
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Affiliation(s)
- Emanuel M Fonseca
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH, United States
| | - Tara A Pelletier
- Department of Biology, Radford University, Radford, VA, United States
| | - Sydney K Decker
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH, United States
| | - Danielle J Parsons
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH, United States
| | - Bryan C Carstens
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH, United States
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49
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Lin HY, Wright S, Costello MJ. Numbers of fish species, higher taxa, and phylogenetic similarity decrease with latitude and depth, and deep-sea assemblages are unique. PeerJ 2023; 11:e16116. [PMID: 37780369 PMCID: PMC10541023 DOI: 10.7717/peerj.16116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Accepted: 08/27/2023] [Indexed: 10/03/2023] Open
Abstract
Species richness has been found to increase from the poles to the tropics but with a small dip near the equator over all marine fishes. Phylogenetic diversity measures offer an alternative perspective on biodiversity linked to evolutionary history. If phylogenetic diversity is standardized for species richness, then it may indicate places with relatively high genetic diversity. Latitudes and depths with both high species and phylogenetic diversity would be a priority for conservation. We compared latitudinal and depth gradients of species richness, and three measures of phylogenetic diversity, namely average phylogenetic diversity (AvPD), the sum of the higher taxonomic levels (STL) and the sum of the higher taxonomic levels divided by the number of species (STL/spp) for modelled ranges of 5,619 marine fish species. We distinguished all, bony and cartilaginous fish groups and four depth zones namely: whole water column; 0 -200 m; 201-1,000 m; and 1,001-6,000 m; at 5° latitudinal intervals from 75°S to 75°N, and at 100 m depth intervals from 0 m to 3,500 m. Species richness and higher taxonomic richness (STL) were higher in the tropics and subtropics with a small dip at the equator, and were significantly correlated among fish groups and depth zones. Species assemblages had closer phylogenetic relationships (lower AvPD and STL/spp) in warmer (low latitudes and shallow water) than colder environments (high latitudes and deep sea). This supports the hypothesis that warmer shallow latitudes and depths have had higher rates of evolution across a range of higher taxa. We also found distinct assemblages of species in different depth zones such that deeper sea species are not simply a subset of shallow assemblages. Thus, conservation needs to be representative of all latitudes and depth zones to encompass global biodiversity.
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Affiliation(s)
- Han-Yang Lin
- Institute of Marine Science, University of Auckland, Auckland, New Zealand
| | - Shane Wright
- Institute of Marine Science, University of Auckland, Auckland, New Zealand
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50
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Zhao Z, Feng X, Zhang Y, Wang Y, Zhou Z, Liu T. Species richness and endemism patterns of Sternorrhyncha (Insecta, Hemiptera) in China. Zookeys 2023; 1178:279-291. [PMID: 37719337 PMCID: PMC10502486 DOI: 10.3897/zookeys.1178.107007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Accepted: 08/18/2023] [Indexed: 09/19/2023] Open
Abstract
One of the main goals in biogeography and ecology is the study of patterns of species diversity and the driving factors in these patterns. However, such studies have not focused on Sternorrhyncha in China, although this region hosts massive species distribution data. Here, based on the 15,450 distribution records of Sternorrhyncha species in China, we analyzed patterns in species richness and endemism at 1° × 1° grid size and determined the effects of environmental variables on these patterns using correlations analysis and the model averaging approach. We found that species richness and endemism of Sternorrhyncha species are unevenly distributed, with high values in the eastern and southeastern coastal regions of mainland China, as well as Taiwan Island. Furthermore, the key factors driving species richness and endemism patterns are inconsistent. Species richness patterns were strongly affected by the normalized difference vegetation index, which is closely related to the feeding habits of Sternorrhyncha, whereas endemism patterns were strongly affected by the elevation range. Therefore, our results indicate that the range size of species should be considered to understand the determinants of species diversity patterns.
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Affiliation(s)
- Zhengxue Zhao
- College of Agriculture, Anshun University, Anshun, ChinaAnshun UniversityAnshunChina
| | - Xueli Feng
- College of Agriculture, Anshun University, Anshun, ChinaAnshun UniversityAnshunChina
| | - Yubo Zhang
- College of Agriculture, Anshun University, Anshun, ChinaAnshun UniversityAnshunChina
| | - Yingjian Wang
- College of Agriculture, Anshun University, Anshun, ChinaAnshun UniversityAnshunChina
| | - Zhengxiang Zhou
- College of Agriculture, Anshun University, Anshun, ChinaAnshun UniversityAnshunChina
| | - Tianlei Liu
- College of Agriculture, Anshun University, Anshun, ChinaAnshun UniversityAnshunChina
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