1
|
Caputo B, De Marco CM, Pichler V, Bottà G, Bennett KL, Amambua-Ngwa A, Assogba SB, Opondo KO, Clarkson CS, Tennessen JA, Weetman D, Miles A, Della Torre A. Population genomic evidence of a putative 'far-west' African cryptic taxon in the Anopheles gambiae complex. Commun Biol 2024; 7:1115. [PMID: 39256556 PMCID: PMC11387608 DOI: 10.1038/s42003-024-06809-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Accepted: 08/29/2024] [Indexed: 09/12/2024] Open
Abstract
The two main Afrotropical malaria vectors - Anopheles coluzzii and An. gambiae - are genetically distinct and reproductively isolated across West Africa. However, populations at the western extreme of their range are assigned as "intermediate" between the two species by whole genome sequence (WGS) data, and as hybrid forms by conventional molecular diagnostics. By exploiting WGS data from 1190 specimens collected across west Africa via the Anopheles gambiae 1000 Genomes network, we identified a putative taxon in the far-west (provisionally named Bissau molecular form), which did not arise by admixture but rather may have originated at the same time as the split between An. coluzzii and An. gambiae. Intriguingly, this taxon lacks insecticide resistance mechanisms commonly observed in the two main species. These findings lead to a change of perspective on malaria vector species in the far-west region with potential for epidemiological implications, and a new challenge for genetic-based mosquito control approaches.
Collapse
Affiliation(s)
- Beniamino Caputo
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "Sapienza", Rome, Italy
| | - Carlo M De Marco
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "Sapienza", Rome, Italy
| | - Verena Pichler
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "Sapienza", Rome, Italy
| | - Giordano Bottà
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "Sapienza", Rome, Italy
| | - Kelly L Bennett
- Wellcome Sanger Genomic Surveillance Unit, Wellcome Sanger Institute, Cambridge, UK
| | - Alfred Amambua-Ngwa
- Disease Control and Elimination Theme (DCE), Medical Research Council Unit, The Gambia at the London School of Hygiene and Tropical Medicine (MRCG-LSHTM), Banjul, The Gambia
| | - Sessinou B Assogba
- Disease Control and Elimination Theme (DCE), Medical Research Council Unit, The Gambia at the London School of Hygiene and Tropical Medicine (MRCG-LSHTM), Banjul, The Gambia
| | - Kevin O Opondo
- Disease Control and Elimination Theme (DCE), Medical Research Council Unit, The Gambia at the London School of Hygiene and Tropical Medicine (MRCG-LSHTM), Banjul, The Gambia
| | - Chris S Clarkson
- Wellcome Sanger Genomic Surveillance Unit, Wellcome Sanger Institute, Cambridge, UK
| | - Jacob A Tennessen
- Harvard T.H. Chan School of Public Health, Boston, MA, USA
- Broad Institute, Cambridge, MA, USA
| | - David Weetman
- Liverpool School of Tropical Medicine, Liverpool, UK
| | - Alistair Miles
- Wellcome Sanger Genomic Surveillance Unit, Wellcome Sanger Institute, Cambridge, UK
| | - Alessandra Della Torre
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "Sapienza", Rome, Italy.
| |
Collapse
|
2
|
Gupta KA, Ikonomidou VN, Glancey M, Faiman R, Talafha S, Ford T, Jenkins T, Goodwin A. Mosquito species identification accuracy of early deployed algorithms in IDX, a vector identification tool. Acta Trop 2024:107392. [PMID: 39255861 DOI: 10.1016/j.actatropica.2024.107392] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Revised: 09/06/2024] [Accepted: 09/07/2024] [Indexed: 09/12/2024]
Abstract
Mosquito-borne diseases continue to pose a great threat to global public health systems due to increased insecticide resistance and climate change. Accurate vector identification is crucial for effective control, yet it presents significant challenges. IDX - an automated computer vision-based device capable of capturing mosquito images and outputting mosquito species ID has been deployed globally resulting in algorithms currently capable of identifying 53 mosquito species. In this study, we evaluate deployed performance of the IDX mosquito species identification algorithms using data from partners in the Southeastern United States (SE US) and Papua New Guinea (PNG) in 2023 and 2024 . This preliminary assessment indicates continued improvement of the IDX mosquito species identification algorithms over the study period for individual species as well as average regional accuracy with macro average recall improving from 55.3% [Confidence Interval (CI) 48.9, 61.7] to 80.2% [CI 77.3, 84.9] for SE US, and 84.1% [CI 75.1, 93.1] to 93.6% [CI 91.6, 95.6] for PNG using a CI of 90%. This study underscores the importance of algorithm refinement and dataset expansion covering more species and regions to enhance identification systems thereby reducing the workload for human experts, addressing taxonomic expertise gaps, and improving vector control efforts.
Collapse
|
3
|
Amaya Romero JE, Chenal C, Ben Chehida Y, Miles A, Clarkson CS, Pedergnana V, Wertheim B, Fontaine MC. Mitochondrial Variation in Anopheles gambiae and Anopheles coluzzii: Phylogeographic Legacy and Mitonuclear Associations With Metabolic Resistance to Pathogens and Insecticides. Genome Biol Evol 2024; 16:evae172. [PMID: 39226386 PMCID: PMC11370803 DOI: 10.1093/gbe/evae172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/22/2024] [Indexed: 09/05/2024] Open
Abstract
Mitochondrial DNA has been a popular marker in phylogeography, phylogeny, and molecular ecology, but its complex evolution is increasingly recognized. Here, we investigated mitochondrial DNA variation in Anopheles gambiae and Anopheles coluzzii, in relation to other species in the Anopheles gambiae complex, by assembling the mitogenomes of 1,219 mosquitoes across Africa. The mitochondrial DNA phylogeny of the Anopheles gambiae complex was consistent with previously reported highly reticulated evolutionary history, revealing important discordances with the species tree. The three most widespread species (An. gambiae, An. coluzzii, and Anopheles arabiensis), known for extensive historical introgression, could not be discriminated based on mitogenomes. Furthermore, a monophyletic clustering of the three saltwater-tolerant species (Anopheles merus, Anopheles melas, and Anopheles bwambae) in the Anopheles gambiae complex also suggested that introgression and possibly selection shaped mitochondrial DNA evolution. Mitochondrial DNA variation in An. gambiae and An. coluzzii across Africa revealed significant partitioning among populations and species. A peculiar mitochondrial DNA lineage found predominantly in An. coluzzii and in the hybrid taxon of the African "far-west" exhibited divergence comparable to the interspecies divergence in the Anopheles gambiae complex, with a geographic distribution matching closely An. coluzzii's geographic range. This phylogeographic relict of the An. coluzzii and An. gambiae split was associated with population and species structure, but not with the rare Wolbachia occurrence. The lineage was significantly associated with single nucleotide polymorphisms in the nuclear genome, particularly in genes associated with pathogen and insecticide resistance. These findings underline potential mitonuclear coevolution history and the role played by mitochondria in shaping metabolic responses to pathogens and insecticides in Anopheles.
Collapse
Affiliation(s)
- Jorge E Amaya Romero
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen 9747 AG, Netherlands
- MIVEGEC, University of Montpellier, CNRS, IRD, Montpellier, France
| | - Clothilde Chenal
- MIVEGEC, University of Montpellier, CNRS, IRD, Montpellier, France
- Institut des Science de l’Évolution de Montpellier, University of Montpellier, CNRS, Montpellier, France
| | - Yacine Ben Chehida
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen 9747 AG, Netherlands
- Ecology and Evolutionary Biology, School of Biosciences, University of Sheffield, Sheffield S10 2TN, UK
| | - Alistair Miles
- Wellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK
| | | | | | - Bregje Wertheim
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen 9747 AG, Netherlands
| | - Michael C Fontaine
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen 9747 AG, Netherlands
- MIVEGEC, University of Montpellier, CNRS, IRD, Montpellier, France
| |
Collapse
|
4
|
Benjamin-Chung J, Li H, Nguyen A, Barratt Heitmann G, Bennett A, Ntuku H, Prach LM, Tambo M, Wu L, Drakeley C, Gosling R, Mumbengegwi D, Kleinschmidt I, Smith JL, Hubbard A, van der Laan M, Hsiang MS. Extension of efficacy range for targeted malaria-elimination interventions due to spillover effects. Nat Med 2024:10.1038/s41591-024-03134-z. [PMID: 38965434 DOI: 10.1038/s41591-024-03134-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Accepted: 06/13/2024] [Indexed: 07/06/2024]
Abstract
Malaria-elimination interventions aim to extinguish hotspots and prevent transmission to nearby areas. Here, we re-analyzed a cluster-randomized trial of reactive, focal interventions (chemoprevention using artemether-lumefantrine and/or indoor residual spraying with pirimiphos-methyl) delivered within 500 m of confirmed malaria index cases in Namibia to measure direct effects (among intervention recipients within 500 m) and spillover effects (among non-intervention recipients within 3 km) on incidence, prevalence and seroprevalence. There was no or weak evidence of direct effects, but the sample size of intervention recipients was small, limiting statistical power. There was the strongest evidence of spillover effects of combined chemoprevention and indoor residual spraying. Among non-recipients within 1 km of index cases, the combined intervention reduced malaria incidence by 43% (95% confidence interval, 20-59%). In analyses among non-recipients within 3 km of interventions, the combined intervention reduced infection prevalence by 79% (6-95%) and seroprevalence, which captures recent infections and has higher statistical power, by 34% (20-45%). Accounting for spillover effects increased the cost-effectiveness of the combined intervention by 42%. Targeting hotspots with combined chemoprevention and vector-control interventions can indirectly benefit non-recipients up to 3 km away.
Collapse
Affiliation(s)
- Jade Benjamin-Chung
- Department of Epidemiology and Population Health, Stanford University, Stanford, CA, USA.
- Chan Zuckerberg Biohub, San Francisco, CA, USA.
| | - Haodong Li
- Division of Biostatistics, University of California, Berkeley, Berkeley, CA, USA
| | - Anna Nguyen
- Department of Epidemiology and Population Health, Stanford University, Stanford, CA, USA
| | | | - Adam Bennett
- Malaria Elimination Initiative, Global Health Group, University of California, San Francisco, San Francisco, CA, USA
- PATH, Seattle, WA, USA
| | - Henry Ntuku
- Malaria Elimination Initiative, Global Health Group, University of California, San Francisco, San Francisco, CA, USA
| | - Lisa M Prach
- Malaria Elimination Initiative, Global Health Group, University of California, San Francisco, San Francisco, CA, USA
| | - Munyaradzi Tambo
- Multidisciplinary Research Centre, University of Namibia, Windhoek, Namibia
| | - Lindsey Wu
- Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, UK
| | - Chris Drakeley
- Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, UK
| | - Roly Gosling
- Malaria Elimination Initiative, Global Health Group, University of California, San Francisco, San Francisco, CA, USA
- Department of Disease Control, London School of Hygiene and Tropical Medicine, London, UK
| | | | - Immo Kleinschmidt
- MRC International Statistics and Epidemiology Group, Department of Infectious Disease Epidemiology, London School of Hygiene and Tropical Medicine, London, UK
- Wits Research Institute for Malaria, Wits/SAMRC Collaborating Centre for Multi-Disciplinary Research on Malaria, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
- Southern African Development Community Malaria Elimination Eight Secretariat, Windhoek, Namibia
| | - Jennifer L Smith
- Malaria Elimination Initiative, Global Health Group, University of California, San Francisco, San Francisco, CA, USA
- Department of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA
| | - Alan Hubbard
- Division of Biostatistics, University of California, Berkeley, Berkeley, CA, USA
| | - Mark van der Laan
- Division of Biostatistics, University of California, Berkeley, Berkeley, CA, USA
| | - Michelle S Hsiang
- Chan Zuckerberg Biohub, San Francisco, CA, USA
- Malaria Elimination Initiative, Global Health Group, University of California, San Francisco, San Francisco, CA, USA
- Department of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA
| |
Collapse
|
5
|
Connelly SV, Brazeau NF, Msellem M, Ngasala BE, Aydemir O, Goel V, Niaré K, Giesbrecht DJ, Popkin-Hall ZR, Hennelly C, Park Z, Moormann AM, Ong'echa JM, Verity R, Mohammed S, Shija SJ, Mhamilawa LE, Morris U, Mårtensson A, Lin JT, Björkman A, Juliano JJ, Bailey JA. Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar. eLife 2024; 12:RP90173. [PMID: 38935423 PMCID: PMC11210957 DOI: 10.7554/elife.90173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/28/2024] Open
Abstract
Background The Zanzibar archipelago of Tanzania has become a low-transmission area for Plasmodium falciparum. Despite being considered an area of pre-elimination for years, achieving elimination has been difficult, likely due to a combination of imported infections from mainland Tanzania and continued local transmission. Methods To shed light on these sources of transmission, we applied highly multiplexed genotyping utilizing molecular inversion probes to characterize the genetic relatedness of 282 P. falciparum isolates collected across Zanzibar and in Bagamoyo district on the coastal mainland from 2016 to 2018. Results Overall, parasite populations on the coastal mainland and Zanzibar archipelago remain highly related. However, parasite isolates from Zanzibar exhibit population microstructure due to the rapid decay of parasite relatedness over very short distances. This, along with highly related pairs within shehias, suggests ongoing low-level local transmission. We also identified highly related parasites across shehias that reflect human mobility on the main island of Unguja and identified a cluster of highly related parasites, suggestive of an outbreak, in the Micheweni district on Pemba island. Parasites in asymptomatic infections demonstrated higher complexity of infection than those in symptomatic infections, but have similar core genomes. Conclusions Our data support importation as a main source of genetic diversity and contribution to the parasite population in Zanzibar, but they also show local outbreak clusters where targeted interventions are essential to block local transmission. These results highlight the need for preventive measures against imported malaria and enhanced control measures in areas that remain receptive to malaria reemergence due to susceptible hosts and competent vectors. Funding This research was funded by the National Institutes of Health, grants R01AI121558, R01AI137395, R01AI155730, F30AI143172, and K24AI134990. Funding was also contributed from the Swedish Research Council, Erling-Persson Family Foundation, and the Yang Fund. RV acknowledges funding from the MRC Centre for Global Infectious Disease Analysis (reference MR/R015600/1), jointly funded by the UK Medical Research Council (MRC) and the UK Foreign, Commonwealth & Development Office (FCDO), under the MRC/FCDO Concordat agreement and is also part of the EDCTP2 program supported by the European Union. RV also acknowledges funding by Community Jameel.
Collapse
Affiliation(s)
- Sean V Connelly
- MD-PhD Program, University of North Carolina at Chapel HillChapel HillUnited States
| | - Nicholas F Brazeau
- MD-PhD Program, University of North Carolina at Chapel HillChapel HillUnited States
| | - Mwinyi Msellem
- Research Division, Ministry of HealthZanzibarUnited Republic of Tanzania
| | - Billy E Ngasala
- Department of Parasitology and Medical Entomology, Muhimbili University of Health and Allied SciencesDar es SalaamUnited Republic of Tanzania
- Global Health and Migration Unit, Department of Women's and Children's Health, Uppsala UniversityUppsalaSweden
| | - Ozkan Aydemir
- Department of Medicine, University of Massachusetts Chan Medical SchoolWorcesterUnited States
| | - Varun Goel
- Carolina Population Center, University of North Carolina at Chapel HillChapel HillUnited States
| | - Karamoko Niaré
- Department of Pathology and Laboratory Medicine, Brown UniversityProvidenceUnited States
| | - David J Giesbrecht
- Department of Pathology and Laboratory Medicine, Brown UniversityProvidenceUnited States
| | - Zachary R Popkin-Hall
- Institute for Global Health and Infectious Diseases, School of Medicine, University of North Carolina at Chapel HillChapel HillUnited States
| | - Chris Hennelly
- Institute for Global Health and Infectious Diseases, School of Medicine, University of North Carolina at Chapel HillChapel HillUnited States
| | - Zackary Park
- Division of Infectious Diseases, Department of Medicine, School of Medicine, University of North Carolina at Chapel HillChapel HillUnited States
| | - Ann M Moormann
- Department of Medicine, University of Massachusetts Chan Medical SchoolWorcesterUnited States
| | - John M Ong'echa
- Center for Global Health Research, Kenya Medical Research InstituteKisumuKenya
| | - Robert Verity
- MRC Centre for Global Infectious Disease Analysis, Imperial College LondonLondonUnited Kingdom
| | - Safia Mohammed
- Zanzibar Malaria Elimination Program (ZAMEP)ZanzibarUnited Republic of Tanzania
| | - Shija J Shija
- Zanzibar Malaria Elimination Program (ZAMEP)ZanzibarUnited Republic of Tanzania
| | - Lwidiko E Mhamilawa
- Department of Parasitology and Medical Entomology, Muhimbili University of Health and Allied SciencesDar es SalaamUnited Republic of Tanzania
- Global Health and Migration Unit, Department of Women's and Children's Health, Uppsala UniversityUppsalaSweden
| | - Ulrika Morris
- Department of Microbiology, Tumor and Cell Biology, Karolinska InstitutetStockholmSweden
| | - Andreas Mårtensson
- Global Health and Migration Unit, Department of Women's and Children's Health, Uppsala UniversityUppsalaSweden
| | - Jessica T Lin
- Division of Infectious Diseases, Department of Medicine, School of Medicine, University of North Carolina at Chapel HillChapel HillUnited States
| | - Anders Björkman
- Department of Microbiology, Tumor and Cell Biology, Karolinska InstitutetStockholmSweden
- Department of Global Public Health, Karolinska InstituteStockholmSweden
| | - Jonathan J Juliano
- Division of Infectious Diseases, Department of Medicine, School of Medicine, University of North Carolina at Chapel HillChapel HillUnited States
- Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina at Chapel HillChapel HillUnited States
- Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel HillChapel HillUnited States
| | - Jeffrey A Bailey
- Department of Pathology and Laboratory Medicine, Brown UniversityProvidenceUnited States
| |
Collapse
|
6
|
Suchan T, Bataille CP, Reich MS, Toro-Delgado E, Vila R, Pierce NE, Talavera G. A trans-oceanic flight of over 4,200 km by painted lady butterflies. Nat Commun 2024; 15:5205. [PMID: 38918383 PMCID: PMC11199637 DOI: 10.1038/s41467-024-49079-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 05/20/2024] [Indexed: 06/27/2024] Open
Abstract
The extent of aerial flows of insects circulating around the planet and their impact on ecosystems and biogeography remain enigmatic because of methodological challenges. Here we report a transatlantic crossing by Vanessa cardui butterflies spanning at least 4200 km, from West Africa to South America (French Guiana) and lasting between 5 and 8 days. Even more, we infer a likely natal origin for these individuals in Western Europe, and the journey Europe-Africa-South America could expand to 7000 km or more. This discovery was possible through an integrative approach, including coastal field surveys, wind trajectory modelling, genomics, pollen metabarcoding, ecological niche modelling, and multi-isotope geolocation of natal origins. The overall journey, which was energetically feasible only if assisted by winds, is among the longest documented for individual insects, and potentially the first verified transatlantic crossing. Our findings suggest that we may be underestimating transoceanic dispersal in insects and highlight the importance of aerial highways connecting continents by trade winds.
Collapse
Affiliation(s)
- Tomasz Suchan
- W. Szafer Institute of Botany, Polish Academy of Sciences, Kraków, Poland
| | - Clément P Bataille
- Department of Earth and Environmental Sciences, University of Ottawa, Ottawa, ON, K1N 6N5, Canada
| | - Megan S Reich
- Department of Biology, University of Ottawa, Ottawa, ON, K1N 6N5, Canada
| | - Eric Toro-Delgado
- Institut Botànic de Barcelona (IBB), CSIC-CMCNB, Barcelona, 08038, Catalonia, Spain
- Institut de Biologia Evolutiva (CSIC-Univ. Pompeu Fabra), Barcelona, 08003, Catalonia, Spain
| | - Roger Vila
- Institut de Biologia Evolutiva (CSIC-Univ. Pompeu Fabra), Barcelona, 08003, Catalonia, Spain
| | - Naomi E Pierce
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, 02138, USA
| | - Gerard Talavera
- Institut Botànic de Barcelona (IBB), CSIC-CMCNB, Barcelona, 08038, Catalonia, Spain.
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, 02138, USA.
| |
Collapse
|
7
|
Gao B, Hu G, Chapman JW. Effects of nocturnal celestial illumination on high-flying migrant insects. Philos Trans R Soc Lond B Biol Sci 2024; 379:20230115. [PMID: 38705175 PMCID: PMC11070249 DOI: 10.1098/rstb.2023.0115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Accepted: 02/27/2024] [Indexed: 05/07/2024] Open
Abstract
Radar networks hold great promise for monitoring population trends of migrating insects. However, it is important to elucidate the nature of responses to environmental cues. We use data from a mini-network of vertical-looking entomological radars in the southern UK to investigate changes in nightly abundance, flight altitude and behaviour of insect migrants, in relation to meteorological and celestial conditions. Abundance of migrants showed positive relationships with air temperature, indicating that this is the single most important variable influencing the decision to initiate migration. In addition, there was a small but significant effect of moonlight illumination, with more insects migrating on full moon nights. While the effect of nocturnal illumination levels on abundance was relatively minor, there was a stronger effect on the insects' ability to orientate close to downwind: flight headings were more tightly clustered on nights when the moon was bright and when cloud cover was sparse. This indicates that nocturnal illumination is important for the navigational mechanisms used by nocturnal insect migrants. Further, our results clearly show that environmental conditions such as air temperature and light levels must be considered if long-term radar datasets are to be used to assess changing population trends of migrants. This article is part of the theme issue 'Towards a toolkit for global insect biodiversity monitoring'.
Collapse
Affiliation(s)
- Boya Gao
- Department of Entomology, Nanjing Agricultural University, Nanjing 210095, People's Republic of China
- Centre of Ecology and Conservation, University of Exeter, Penryn, Cornwall TR10 9FE, UK
| | - Gao Hu
- Department of Entomology, Nanjing Agricultural University, Nanjing 210095, People's Republic of China
- Centre of Ecology and Conservation, University of Exeter, Penryn, Cornwall TR10 9FE, UK
| | - Jason W. Chapman
- Department of Entomology, Nanjing Agricultural University, Nanjing 210095, People's Republic of China
- Centre of Ecology and Conservation, University of Exeter, Penryn, Cornwall TR10 9FE, UK
- Environment and Sustainability Institute, University of Exeter, Penryn, Cornwall TR10 9FE, UK
| |
Collapse
|
8
|
Haest B, Liechti F, Hawkes WL, Chapman J, Åkesson S, Shamoun-Baranes J, Nesterova AP, Comor V, Preatoni D, Bauer S. Continental-scale patterns in diel flight timing of high-altitude migratory insects. Philos Trans R Soc Lond B Biol Sci 2024; 379:20230116. [PMID: 38705191 PMCID: PMC11070267 DOI: 10.1098/rstb.2023.0116] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 02/07/2024] [Indexed: 05/07/2024] Open
Abstract
Many insects depend on high-altitude, migratory movements during part of their life cycle. The daily timing of these migratory movements is not random, e.g. many insect species show peak migratory flight activity at dawn, noon or dusk. These insects provide essential ecosystem services such as pollination but also contribute to crop damage. Quantifying the diel timing of their migratory flight and its geographical and seasonal variation, are hence key towards effective conservation and pest management. Vertical-looking radars provide continuous and automated measurements of insect migration, but large-scale application has not been possible because of limited availability of suitable devices. Here, we quantify patterns in diel flight periodicity of migratory insects between 50 and 500 m above ground level during March-October 2021 using a network of 17 vertical-looking radars across Europe. Independent of the overall daily migratory movements and location, peak migratory movements occur around noon, during crepuscular evening and occasionally the morning. Relative daily proportions of insect migration intensity and traffic during the diel phases of crepuscular-morning, day, crepuscular-evening and night remain largely equal throughout May-September and across Europe. These findings highlight, extend, and generalize previous regional-scale findings on diel migratory insect movement patterns to the whole of temperate Europe. This article is part of the theme issue 'Towards a toolkit for global insect biodiversity monitoring'.
Collapse
Affiliation(s)
- Birgen Haest
- Swiss Ornithological Institute, Seerose 1, Sempach, 6204, Switzerland
| | - Felix Liechti
- Swiss Birdradar Solution AG, Technoparkstrasse 2, 8406, Winterthur, Switzerland
| | - Will L. Hawkes
- Swiss Ornithological Institute, Seerose 1, Sempach, 6204, Switzerland
| | - Jason Chapman
- Centre for Ecology and Conservation and Environment and Sustainability Institute, University of Exeter, Cornwall Campus, Penryn, TR10 9FE, UK
- Department of Entomology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
| | - Susanne Åkesson
- Department of Biology, Centre for Animal Movement Research, Lund University, Ecology Building, 22362 Lund, Sweden
| | - Judy Shamoun-Baranes
- Theoretical and Computational Ecology, IBED, University of Amsterdam, P.O. Box 94240, Amsterdam, GE 1090, The Netherlands
| | | | - Vincent Comor
- Independent researcher, Les Pennes-Mirabeau, 13170, France
| | - Damiano Preatoni
- Department of Theoretical and Applied Sciences, University of Insubria, Via J.-H. Dunant 3, Varese, 21100 Italy
| | - Silke Bauer
- Swiss Ornithological Institute, Seerose 1, Sempach, 6204, Switzerland
- Theoretical and Computational Ecology, IBED, University of Amsterdam, P.O. Box 94240, Amsterdam, GE 1090, The Netherlands
| |
Collapse
|
9
|
Sappington TW. Aseasonal, undirected migration in insects: 'Invisible' but common. iScience 2024; 27:110040. [PMID: 38883831 PMCID: PMC11177203 DOI: 10.1016/j.isci.2024.110040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/18/2024] Open
Abstract
Many insect pests are long-distance migrants, moving from lower latitudes where they overwinter to higher latitudes in spring to exploit superabundant, but seasonally ephemeral, host crops. These seasonal long-distance migration events are relatively easy to recognize, and justifiably garner much research attention. Evidence indicates several pest species that overwinter in diapause, and thus inhabit a year-round range, also engage in migratory flight, which is somewhat "invisible" because displacement is nondirectional and terminates among conspecifics. Support for aseasonal, undirected migration is related to recognizing true migratory flight behavior, which differs fundamentally from most other kinds of flight in that it is nonappetitive. Migrating adults are not searching for resources and migratory flight is not arrested by encounters with potential resources. The population-level consequence of aseasonal, undirected migration is spatial mixing of individuals within the larger metapopulation, which has important implications for population dynamics, gene flow, pest management, and insect resistance management.
Collapse
Affiliation(s)
- Thomas W Sappington
- USDA, Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, Ames, IA 50011, USA
- Department of Plant Pathology, Entomology and Microbiology, Iowa State University, Ames, IA 50011, USA
| |
Collapse
|
10
|
Zembere K, Jones CM, Mthawanji R, Nkolokosa C, Kamwezi R, Kalonde PK, Stanton MC. Small dams drive Anopheles abundance during the dry season in a high malaria burden area of Malawi. MEDICAL AND VETERINARY ENTOMOLOGY 2024. [PMID: 39031697 DOI: 10.1111/mve.12733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 05/16/2024] [Indexed: 07/22/2024]
Abstract
This study explores the influence of small dams on the exposure to malaria vectors during the dry season in Kasungu district, Malawi, an area recently identified as high priority for malaria interventions by the National Malaria Control Programme. Small dam impoundments provide communities with a continuous supply of water for domestic and agricultural activities across sub-Saharan Africa and are considered vital to food security and climate change resilience. However, these permanent water bodies also create ideal breeding sites for mosquitoes in typically arid landscapes. The study focuses on a specific dam impoundment and its vicinity, aiming to assess its spatial and temporal influence on indoor vector densities. From May to August 2021, CDC light traps were used to measure indoor mosquito densities for two consecutive nights per month in three communities located at increasing distances from the dam (0, ~1 and ~2 km). Simultaneously, drone imagery was captured for each community, enabling the identification of additional standing water within approximately 400 m of selected households. Larval sampling was carried out within the impoundment periphery and in additional water bodies identified in the drone imagery. Generalised linear mixed models (GLMMs) were employed to analyse the indoor Anopheles abundance data, estimating the effects of household structure (open/closed eaves), month, temperature and water proximity on malaria vector exposure. Throughout 685 trapping nights, a total of 1256 mosquitoes were captured, with 33% (412) being female Anopheles. Among these, 91% were morphologically identified as Anopheles funestus s.l., and 5% as Anopheles gambiae s.l. Catches progressively decline in each consecutive trapping month as the environment became drier. This decline was much slower in Malangano, the community next to the dam, with abundance being notably higher in June and July. Further, the majority of An. gambiae s.l. were caught in May, with none identified in July and August. Anopheles larvae were found both in the impoundment and other smaller water bodies such as irrigation wells in each survey month; however, the presence of these smaller water bodies did not have a significant impact on adult female mosquito catches in the GLMM. The study concludes that proximity to the dam impoundment was the primary driver of differences between survey communities with the abundance in Chikhombwe (~1 km away) and Chiponde (~2 km away) being 0.35 (95% confidence interval [CI], 0.19-0.66) and 0.28 (95% CI, 0.16-0.47) lower than Malangano, respectively, after adjusting for other factors. These findings underscore the importance of targeted interventions, such as larval source management or housing improvements, near small dams to mitigate malaria transmission risks during the dry season. Further research is needed to develop cost-effective strategies for vector control within and around these impoundments.
Collapse
Affiliation(s)
- Kennedy Zembere
- Vector Biology Group, Malawi-Liverpool-Wellcome Programme, Blantyre, Malawi
| | - Christopher M Jones
- Vector Biology Group, Malawi-Liverpool-Wellcome Programme, Blantyre, Malawi
- Vector Biology Department, Liverpool School of Tropical Medicine, Liverpool, UK
| | - Rhosheen Mthawanji
- Vector Biology Group, Malawi-Liverpool-Wellcome Programme, Blantyre, Malawi
| | - Clinton Nkolokosa
- Vector Biology Group, Malawi-Liverpool-Wellcome Programme, Blantyre, Malawi
| | - Richard Kamwezi
- Vector Biology Group, Malawi-Liverpool-Wellcome Programme, Blantyre, Malawi
- Centre for Health Informatics, Computing, and Statistics (CHICAS), Faculty of Health and Medicine, Lancaster University, Lancaster, UK
| | - Patrick Ken Kalonde
- Vector Biology Group, Malawi-Liverpool-Wellcome Programme, Blantyre, Malawi
- Vector Biology Department, Liverpool School of Tropical Medicine, Liverpool, UK
| | - Michelle C Stanton
- Vector Biology Department, Liverpool School of Tropical Medicine, Liverpool, UK
| |
Collapse
|
11
|
Nartey R, Chamorro L, Buffington M, Afrane YA, Mohammed AR, Owusu-Asenso CM, Akosah-Brempong G, Pambit Zong CMA, Hendrix SV, Dao A, Yaro AS, Diallo M, Sanogo ZL, Djibril S, Halbert SE, Bamou R, Nance CE, Bartlett CR, Reynolds DR, Chapman JW, Obiri-Danso K, Lehmann T. Invasion and spread of the neotropical leafhopper Curtara insularis (Hemiptera: Cicadellidae) in Africa and North America and the role of high-altitude windborne migration in invasive insects. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.24.595796. [PMID: 38854158 PMCID: PMC11160610 DOI: 10.1101/2024.05.24.595796] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
Invasive insects threaten ecosystem stability, public health, and food security. Documenting newly invasive species and understanding how they reach into new territories, establish populations, and interact with other species remain vitally important. Here, we report on the invasion of the South American leafhopper, Curtara insularis into Africa, where it has established populations in Ghana, encroaching inland at least 350 km off the coast. Importantly, 80% of the specimens collected were intercepted between 160 and 190 m above ground. Further, the fraction of this species among all insects collected was also higher at altitude, demonstrating its propensity to engage in high-altitude windborne dispersal. Its aerial densities at altitude translate into millions of migrants/km over a year, representing massive propagule pressure. Given the predominant south-westerly winds, these sightings suggest an introduction of C. insularis into at least one of the Gulf of Guinea ports. To assess the contribution of windborne dispersal to its spread in a new territory, we examine records of C. insularis range-expansion in the USA. Reported first in 2004 from central Florida, it reached north Florida (Panhandle) by 2008-2011 and subsequently spread across the southeastern and south-central US. Its expansion fits a "diffusion-like" process with 200-300 km long "annual displacement steps"-a pattern consistent with autonomous dispersal rather than vehicular transport. Most "steps" are consistent with common wind trajectories from the nearest documented population, assuming 2-8 hours of wind-assisted flight at altitude. Curtara insularis has been intercepted at US ports and on trucks. Thus, it uses multiple dispersal modalities, yet its rapid overland spread is better explained by its massive propagule pressure linked with its high-altitude windborne dispersal. We propose that high-altitude windborne dispersal is common yet under-appreciated in invasive insect species.
Collapse
|
12
|
Connolly JB, Burt A, Christophides G, Diabate A, Habtewold T, Hancock PA, James AA, Kayondo JK, Lwetoijera DW, Manjurano A, McKemey AR, Santos MR, Windbichler N, Randazzo F. Considerations for first field trials of low-threshold gene drive for malaria vector control. Malar J 2024; 23:156. [PMID: 38773487 PMCID: PMC11110314 DOI: 10.1186/s12936-024-04952-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 04/15/2024] [Indexed: 05/23/2024] Open
Abstract
Sustainable reductions in African malaria transmission require innovative tools for mosquito control. One proposal involves the use of low-threshold gene drive in Anopheles vector species, where a 'causal pathway' would be initiated by (i) the release of a gene drive system in target mosquito vector species, leading to (ii) its transmission to subsequent generations, (iii) its increase in frequency and spread in target mosquito populations, (iv) its simultaneous propagation of a linked genetic trait aimed at reducing vectorial capacity for Plasmodium, and (v) reduced vectorial capacity for parasites in target mosquito populations as the gene drive system reaches fixation in target mosquito populations, causing (vi) decreased malaria incidence and prevalence. Here the scope, objectives, trial design elements, and approaches to monitoring for initial field releases of such gene dive systems are considered, informed by the successful implementation of field trials of biological control agents, as well as other vector control tools, including insecticides, Wolbachia, larvicides, and attractive-toxic sugar bait systems. Specific research questions to be addressed in initial gene drive field trials are identified, and adaptive trial design is explored as a potentially constructive and flexible approach to facilitate testing of the causal pathway. A fundamental question for decision-makers for the first field trials will be whether there should be a selective focus on earlier points of the pathway, such as genetic efficacy via measurement of the increase in frequency and spread of the gene drive system in target populations, or on wider interrogation of the entire pathway including entomological and epidemiological efficacy. How and when epidemiological efficacy will eventually be assessed will be an essential consideration before decisions on any field trial protocols are finalized and implemented, regardless of whether initial field trials focus exclusively on the measurement of genetic efficacy, or on broader aspects of the causal pathway. Statistical and modelling tools are currently under active development and will inform such decisions on initial trial design, locations, and endpoints. Collectively, the considerations here advance the realization of developer ambitions for the first field trials of low-threshold gene drive for malaria vector control within the next 5 years.
Collapse
Affiliation(s)
- John B Connolly
- Department of Life Sciences, Silwood Park, Imperial College London, London, UK.
| | - Austin Burt
- Department of Life Sciences, Silwood Park, Imperial College London, London, UK
| | - George Christophides
- Department of Life Sciences, South Kensington Campus, Imperial College London, London, UK
| | - Abdoulaye Diabate
- Institut de Recherche en Sciences de la Santé/Centre Muraz, Bobo-Dioulasso, Burkina Faso
| | - Tibebu Habtewold
- Department of Life Sciences, South Kensington Campus, Imperial College London, London, UK
- Environmental Health and Ecological Science Department, Ifakara Health Institute, Ifakara, Tanzania
| | - Penelope A Hancock
- MRC Centre for Global Infectious Disease Analysis, St. Mary's Campus, Imperial College London, London, UK
| | - Anthony A James
- Departments of Microbiology & Molecular Genetics and Molecular Biology & Biochemistry, University of California, Irvine, USA
| | - Jonathan K Kayondo
- Entomology Department, Uganda Virus Research Institute (UVRI), Entebbe, Uganda
| | | | - Alphaxard Manjurano
- Malaria Research Unit and Laboratory Sciences, Mwanza Medical Research Centre, National Institute for Medical Research, Mwanza, Tanzania
| | - Andrew R McKemey
- Department of Life Sciences, Silwood Park, Imperial College London, London, UK
| | - Michael R Santos
- Foundation for the National Institutes of Health, North Bethesda, MD, USA
| | - Nikolai Windbichler
- Department of Life Sciences, South Kensington Campus, Imperial College London, London, UK
| | | |
Collapse
|
13
|
Saraiva JF, Furtado NVR, Maitra A, Carvalho DP, Galardo AKR, Lima JBP. Trends of Mansonia (Diptera, Culicidae, Mansoniini) in Porto Velho: Seasonal patterns and meteorological influences. PLoS One 2024; 19:e0303405. [PMID: 38718006 PMCID: PMC11078429 DOI: 10.1371/journal.pone.0303405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Accepted: 04/15/2024] [Indexed: 05/12/2024] Open
Abstract
Entomological research is vital for shaping strategies to control mosquito vectors. Its significance also reaches into environmental management, aiming to prevent inconveniences caused by non-vector mosquitoes like the Mansonia Blanchard, 1901 mosquito. In this study, we carried out a five-year (2019-2023) monitoring of these mosquitoes at ten sites in Porto Velho, Rondônia, using SkeeterVac SV3100 automatic traps positioned between the two hydroelectric complexes on the Madeira River. Throughout this period, we sampled 153,125 mosquitoes, of which the Mansonia genus accounted for 54% of the total, indicating its prevalence in the region. ARIMA analysis revealed seasonal patterns of Mansonia spp., highlighting periods of peak density. Notably, a significant decreasing trend in local abundance was observed from July 2021 (25th epidemiological week) until the end of the study. Wind speed was observed to be the most relevant meteorological factor influencing the abundance of Mansonia spp. especially in the Joana D'Arc settlement, although additional investigation is needed to comprehensively analyze other local events and gain a deeper understanding of the ecological patterns of this genus in the Amazon region.
Collapse
Affiliation(s)
- José Ferreira Saraiva
- Medical Entomology Laboratory, Instituto de Pesquisas Científicas e Tecnológicas do Estado do Amapá –IEPA, Macapá, Amapá, Brazil
| | - Nercy Virginia Rabelo Furtado
- Medical Entomology Laboratory, Instituto de Pesquisas Científicas e Tecnológicas do Estado do Amapá –IEPA, Macapá, Amapá, Brazil
- Postgraduate Program in Tropical Medicine, Instituto Oswaldo Cruz, Fiocruz, Manguinhos, Rio de Janeiro, Brazil
| | - Ahana Maitra
- Department of Pharmacy–Pharmaceutical Sciences, University of Bari “Aldo Moro”, Bari, Italy
| | | | - Allan Kardec Ribeiro Galardo
- Medical Entomology Laboratory, Instituto de Pesquisas Científicas e Tecnológicas do Estado do Amapá –IEPA, Macapá, Amapá, Brazil
| | - José Bento Pereira Lima
- Laboratory of Biology, Control, and Surveillance of Insect Vectors (LaBiCoVIV), Instituto Oswaldo Cruz (IOC), Fiocruz, Rio de Janeiro, Brazil
| |
Collapse
|
14
|
Pan YF, Zhao H, Gou QY, Shi PB, Tian JH, Feng Y, Li K, Yang WH, Wu D, Tang G, Zhang B, Ren Z, Peng S, Luo GY, Le SJ, Xin GY, Wang J, Hou X, Peng MW, Kong JB, Chen XX, Yang CH, Mei SQ, Liao YQ, Cheng JX, Wang J, Chaolemen, Wu YH, Wang JB, An T, Huang X, Eden JS, Li J, Guo D, Liang G, Jin X, Holmes EC, Li B, Wang D, Li J, Wu WC, Shi M. Metagenomic analysis of individual mosquito viromes reveals the geographical patterns and drivers of viral diversity. Nat Ecol Evol 2024; 8:947-959. [PMID: 38519631 DOI: 10.1038/s41559-024-02365-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Accepted: 02/11/2024] [Indexed: 03/25/2024]
Abstract
Mosquito transmitted viruses are responsible for an increasing burden of human disease. Despite this, little is known about the diversity and ecology of viruses within individual mosquito hosts. Here, using a meta-transcriptomic approach, we determined the viromes of 2,438 individual mosquitoes (81 species), spanning ~4,000 km along latitudes and longitudes in China. From these data we identified 393 viral species associated with mosquitoes, including 7 (putative) species of arthropod-borne viruses (that is, arboviruses). We identified potential mosquito species and geographic hotspots of viral diversity and arbovirus occurrence, and demonstrated that the composition of individual mosquito viromes was strongly associated with host phylogeny. Our data revealed a large number of viruses shared among mosquito species or genera, enhancing our understanding of the host specificity of insect-associated viruses. We also detected multiple virus species that were widespread throughout the country, perhaps reflecting long-distance mosquito dispersal. Together, these results greatly expand the known mosquito virome, linked viral diversity at the scale of individual insects to that at a country-wide scale, and offered unique insights into the biogeography and diversity of viruses in insect vectors.
Collapse
Affiliation(s)
- Yuan-Fei Pan
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Ministry of Education Key Laboratory of Biodiversity Science and Ecological Engineering, School of Life Sciences, Fudan University, Shanghai, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Hailong Zhao
- BGI Research, Shenzhen, China
- Shenzhen Key Laboratory of Unknown Pathogen Identification, BGI Research, Shenzhen, China
| | - Qin-Yu Gou
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Pei-Bo Shi
- BGI Research, Shenzhen, China
- Shenzhen Key Laboratory of Unknown Pathogen Identification, BGI Research, Shenzhen, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Jun-Hua Tian
- Wuhan Center for Disease Control and Prevention, Wuhan, China
| | - Yun Feng
- Department of Viral and Rickettsial Disease Control, Yunnan Provincial Key Laboratory for Zoonosis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali, China
| | - Kun Li
- National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Wei-Hong Yang
- Department of Viral and Rickettsial Disease Control, Yunnan Provincial Key Laboratory for Zoonosis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali, China
| | - De Wu
- Guangdong Provincial Center for Disease Control and Prevention, Guangzhou, China
| | - Guangpeng Tang
- Guizhou Center for Disease Control and Prevention, Guiyang, China
| | - Bing Zhang
- Xinjiang Key Laboratory of Molecular Biology for Endemic Diseases, School of Basic Medical Sciences, Xinjiang Medical University, Urumqi, China
| | - Zirui Ren
- BGI Research, Shenzhen, China
- Shenzhen Key Laboratory of Unknown Pathogen Identification, BGI Research, Shenzhen, China
| | - Shiqin Peng
- BGI Research, Shenzhen, China
- Shenzhen Key Laboratory of Unknown Pathogen Identification, BGI Research, Shenzhen, China
| | - Geng-Yan Luo
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Shi-Jia Le
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Gen-Yang Xin
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Jing Wang
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Xin Hou
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Min-Wu Peng
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Jian-Bin Kong
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Xin-Xin Chen
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Chun-Hui Yang
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Shi-Qiang Mei
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Yu-Qi Liao
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Jing-Xia Cheng
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
| | - Juan Wang
- Department of Viral and Rickettsial Disease Control, Yunnan Provincial Key Laboratory for Zoonosis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali, China
| | - Chaolemen
- Old Barag Banner Center for Disease Control and Prevention, Hulunbuir, China
| | - Yu-Hui Wu
- Old Barag Banner Center for Disease Control and Prevention, Hulunbuir, China
| | - Jian-Bo Wang
- Hulunbuir Center for Disease Control and Prevention, Hulunbuir, China
| | - Tongqing An
- State Key Laboratory of Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China
| | - Xinyi Huang
- State Key Laboratory of Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China
| | - John-Sebastian Eden
- Centre for Virus Research, Westmead Institute for Medical Research, Westmead, New South Wales, Australia
- Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, New South Wales, Australia
| | - Jun Li
- Department of Infectious Diseases and Public Health, Jockey Club College of Veterinary Medicine and Life Sciences, City University of Hong Kong, Hong Kong, China
| | - Deyin Guo
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China
- Guangzhou National Laboratory, Guangzhou International Bio-Island, Guangzhou, China
| | - Guodong Liang
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Xin Jin
- BGI Research, Shenzhen, China
| | - Edward C Holmes
- Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, New South Wales, Australia
| | - Bo Li
- Ministry of Education Key Laboratory of Biodiversity Science and Ecological Engineering, School of Life Sciences, Fudan University, Shanghai, China.
- Ministry of Education Key Laboratory for Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology and Centre for Invasion Biology, Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China.
| | - Daxi Wang
- BGI Research, Shenzhen, China.
- Shenzhen Key Laboratory of Unknown Pathogen Identification, BGI Research, Shenzhen, China.
| | - Junhua Li
- BGI Research, Shenzhen, China.
- Shenzhen Key Laboratory of Unknown Pathogen Identification, BGI Research, Shenzhen, China.
| | - Wei-Chen Wu
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China.
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China.
| | - Mang Shi
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China.
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China.
| |
Collapse
|
15
|
Huang J, Feng H, Drake VA, Reynolds DR, Gao B, Chen F, Zhang G, Zhu J, Gao Y, Zhai B, Li G, Tian C, Huang B, Hu G, Chapman JW. Massive seasonal high-altitude migrations of nocturnal insects above the agricultural plains of East China. Proc Natl Acad Sci U S A 2024; 121:e2317646121. [PMID: 38648486 PMCID: PMC11067063 DOI: 10.1073/pnas.2317646121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Accepted: 03/13/2024] [Indexed: 04/25/2024] Open
Abstract
Long-distance migrations of insects contribute to ecosystem functioning but also have important economic impacts when the migrants are pests or provide ecosystem services. We combined radar monitoring, aerial sampling, and searchlight trapping, to quantify the annual pattern of nocturnal insect migration above the densely populated agricultural lands of East China. A total of ~9.3 trillion nocturnal insect migrants (15,000 t of biomass), predominantly Lepidoptera, Hemiptera, and Diptera, including many crop pests and disease vectors, fly at heights up to 1 km above this 600 km-wide region every year. Larger migrants (>10 mg) exhibited seasonal reversal of movement directions, comprising northward expansion during spring and summer, followed by southward movements during fall. This north-south transfer was not balanced, however, with southward movement in fall 0.66× that of northward movement in spring and summer. Spring and summer migrations were strongest when the wind had a northward component, while in fall, stronger movements occurred on winds that allowed movement with a southward component; heading directions of larger insects were generally close to the track direction. These findings indicate adaptations leading to movement in seasonally favorable directions. We compare our results from China with similar studies in Europe and North America and conclude that ecological patterns and behavioral adaptations are similar across the Northern Hemisphere. The predominance of pests among these nocturnal migrants has severe implications for food security and grower prosperity throughout this heavily populated region, and knowledge of their migrations is potentially valuable for forecasting pest impacts and planning timely management actions.
Collapse
Affiliation(s)
- Jianrong Huang
- Henan Key Laboratory of Crop Pest Control, Key Laboratory for Integrated Crop Pests Management on Crops in Southern Region of North China, International Joint Research Laboratory for Crop Protection of Henan, No. 0 Entomological Radar Field Scientific Observation and Research Station of Henan Province, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan450002, China
- Centre for Ecology and Conservation, and Environment and Sustainability Institute, University of Exeter, Penryn, CornwallTR10 9FE, United Kingdom
| | - Hongqiang Feng
- Henan Key Laboratory of Crop Pest Control, Key Laboratory for Integrated Crop Pests Management on Crops in Southern Region of North China, International Joint Research Laboratory for Crop Protection of Henan, No. 0 Entomological Radar Field Scientific Observation and Research Station of Henan Province, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan450002, China
| | - V. Alistair Drake
- School of Science, UNSW Canberra, The University of New South Wales, Canberra, ACT2610, Australia
- Institute for Applied Ecology, Faculty of Science and Technology, University of Canberra, Canberra, ACT2617, Australia
| | - Don R. Reynolds
- Natural Resources Institute, University of Greenwich, Chatham, KentME4 4 TB, United Kingdom
- Department of Computational and Analytical Sciences, Rothamsted Research, Harpenden, HertsAL5 2JQ, United Kingdom
| | - Boya Gao
- Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, Jiangsu210095, China
| | - Fajun Chen
- Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, Jiangsu210095, China
| | - Guoyan Zhang
- Plant Protection and Quarantine Station of Henan Province, Zhengzhou, Henan450002, China
| | - Junsheng Zhu
- Shandong Agricultural Technology Extension Center, Jinan, Shandong250100, China
| | - Yuebo Gao
- Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, Jiangsu210095, China
- Institute of Plant Protection, Jilin Academy of Agricultural Sciences, Gongzhuling, Jilin136100, China
| | - Baoping Zhai
- Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, Jiangsu210095, China
| | - Guoping Li
- Henan Key Laboratory of Crop Pest Control, Key Laboratory for Integrated Crop Pests Management on Crops in Southern Region of North China, International Joint Research Laboratory for Crop Protection of Henan, No. 0 Entomological Radar Field Scientific Observation and Research Station of Henan Province, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan450002, China
| | - Caihong Tian
- Henan Key Laboratory of Crop Pest Control, Key Laboratory for Integrated Crop Pests Management on Crops in Southern Region of North China, International Joint Research Laboratory for Crop Protection of Henan, No. 0 Entomological Radar Field Scientific Observation and Research Station of Henan Province, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan450002, China
| | - Bo Huang
- Henan Key Laboratory of Crop Pest Control, Key Laboratory for Integrated Crop Pests Management on Crops in Southern Region of North China, International Joint Research Laboratory for Crop Protection of Henan, No. 0 Entomological Radar Field Scientific Observation and Research Station of Henan Province, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan450002, China
| | - Gao Hu
- Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, Jiangsu210095, China
| | - Jason W. Chapman
- Centre for Ecology and Conservation, and Environment and Sustainability Institute, University of Exeter, Penryn, CornwallTR10 9FE, United Kingdom
- Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, Jiangsu210095, China
| |
Collapse
|
16
|
Hu QL, Zhuo JC, Fang GQ, Lu JB, Ye YX, Li DT, Lou YH, Zhang XY, Chen X, Wang SL, Wang ZC, Zhang YX, Mazlan N, OO SS, Thet T, Sharma PN, Jauharlina J, Sukorini IH, Ibisate MT, Rahman SM, Ansari NA, Chen AD, Zhu ZR, Heong KL, Lu G, Huang HJ, Li JM, Chen JP, Zhan S, Zhang CX. The genomic history and global migration of a windborne pest. SCIENCE ADVANCES 2024; 10:eadk3852. [PMID: 38657063 PMCID: PMC11042747 DOI: 10.1126/sciadv.adk3852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Accepted: 03/20/2024] [Indexed: 04/26/2024]
Abstract
Many insect pests, including the brown planthopper (BPH), undergo windborne migration that is challenging to observe and track. It remains controversial about their migration patterns and largely unknown regarding the underlying genetic basis. By analyzing 360 whole genomes from around the globe, we clarify the genetic sources of worldwide BPHs and illuminate a landscape of BPH migration showing that East Asian populations perform closed-circuit journeys between Indochina and the Far East, while populations of Malay Archipelago and South Asia undergo one-way migration to Indochina. We further find round-trip migration accelerates population differentiation, with highly diverged regions enriching in a gene desert chromosome that is simultaneously the speciation hotspot between BPH and related species. This study not only shows the power of applying genomic approaches to demystify the migration in windborne migrants but also enhances our understanding of how seasonal movements affect speciation and evolution in insects.
Collapse
Affiliation(s)
- Qing-Ling Hu
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
- Institute of Insect Science, Zhejiang University, Hangzhou 310058, China
| | - Ji-Chong Zhuo
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Gang-Qi Fang
- Key Laboratory of Plant Design, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jia-Bao Lu
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Yu-Xuan Ye
- Institute of Insect Science, Zhejiang University, Hangzhou 310058, China
| | - Dan-Ting Li
- Institute of Insect Science, Zhejiang University, Hangzhou 310058, China
| | - Yi-Han Lou
- Institute of Insect Science, Zhejiang University, Hangzhou 310058, China
| | - Xiao-Ya Zhang
- Institute of Insect Science, Zhejiang University, Hangzhou 310058, China
| | - Xuan Chen
- Institute of Insect Science, Zhejiang University, Hangzhou 310058, China
| | - Si-Liang Wang
- Institute of Insect Science, Zhejiang University, Hangzhou 310058, China
| | - Zhe-Chao Wang
- Institute of Insect Science, Zhejiang University, Hangzhou 310058, China
| | - Yi-Xiang Zhang
- Key Laboratory of Plant Design, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Norida Mazlan
- Institute of Tropical Agriculture and Food Security, and Faculty of Agriculture, University Putra Malaysia, 43400 Serdang, Malaysia
| | - San San OO
- Taungoo University, Taungoo 05063, Myanmar
| | - Thet Thet
- Taungoo University, Taungoo 05063, Myanmar
| | - Prem Nidhi Sharma
- Entomology Division, Nepal Agricultural Research Council, Khumaltar, Lalitpur, Kathmandu 44600, Nepal
| | - Jauharlina Jauharlina
- Department of Plant Protection, Faculty of Agriculture, Syiah Kuala University, Banda Aceh 23111, Indonesia
| | - Ir Henik Sukorini
- Agrotechnology Study Program, Muhammadiyah University of Malang, Malang 65145, Indonesia
| | - Michael T. Ibisate
- College of Agriculture, Forestry and Environmental Sciences, Aklan State University, Banga, Aklan 5601, Philippines
| | - S.M. Mizanur Rahman
- Sher-e-Bangla Agricultural University, Sher-e-Bangla Nagar, Dhaka 1207, Bangladesh
| | - Naved Ahmad Ansari
- Institute of Insect Science, Zhejiang University, Hangzhou 310058, China
- Department of Zoology, Aligarh Muslim University, Aligarh, U.P. 202002, India
| | - Ai-Dong Chen
- Agriculture Environment and Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming 650205, China
| | - Zeng-Rong Zhu
- Institute of Insect Science, Zhejiang University, Hangzhou 310058, China
- Hainan Institute, Zhejiang University, Sanya 572025, China
| | - Kong Luen Heong
- Institute of Insect Science, Zhejiang University, Hangzhou 310058, China
| | - Gang Lu
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Hai-Jian Huang
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Jun-Min Li
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Jian-Ping Chen
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Shuai Zhan
- Key Laboratory of Plant Design, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Chuan-Xi Zhang
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
- Institute of Insect Science, Zhejiang University, Hangzhou 310058, China
| |
Collapse
|
17
|
Cribellier A, Camilo LH, Goyal P, Muijres FT. Mosquitoes escape looming threats by actively flying with the bow wave induced by the attacker. Curr Biol 2024; 34:1194-1205.e7. [PMID: 38367617 DOI: 10.1016/j.cub.2024.01.066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2023] [Revised: 01/03/2024] [Accepted: 01/26/2024] [Indexed: 02/19/2024]
Abstract
To detect and escape looming threats, night-flying insects must rely on other senses than vision alone. Nocturnal mosquitoes can evade looming objects in the dark, but how they achieve this is still unknown. Here, we show how night-active female malaria mosquitoes escape from rapidly looming objects that simulate defensive actions of blood-hosts. First, we quantified the escape performance of flying mosquitoes from an event-triggered mechanical swatter, showing that mosquitoes use swatter-induced airflow to increase their escape success. Secondly, we used high-speed videography and deep-learning-based tracking to analyze escape flights in detail, showing that mosquitoes use banked turns to evade the threat. By combining escape kinematics data with numerical simulations of attacker-induced airflow and a mechanistic movement model, we unraveled how mosquitoes control these banked evasive maneuvers: they actively steer away from the danger, and then passively travel with the bow wave produced by the attacker. Our results demonstrate that night-flying mosquitoes can detect looming objects when visual cues are minimal, suggesting that they use attacker-induced airflow both to detect the danger and as a fluid medium to move with away from the threat. This shows that escape strategies of flying insects are more complex than previous visually induced escape flight studies suggest. As most insects are of similar or smaller sizes than mosquitoes, comparable escape strategies are expected among millions of flying insect species. The here-observed escape maneuvers are distinct from those of mosquitoes escaping from odor-baited traps, thus providing new insights for the development of novel trapping techniques for integrative vector management.
Collapse
Affiliation(s)
- Antoine Cribellier
- Experimental Zoology Group, Wageningen University, De Elst 1, 6708 WD Wageningen, the Netherlands; Laboratory of Entomology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands.
| | - Leonardo Honfi Camilo
- Experimental Zoology Group, Wageningen University, De Elst 1, 6708 WD Wageningen, the Netherlands
| | - Pulkit Goyal
- Experimental Zoology Group, Wageningen University, De Elst 1, 6708 WD Wageningen, the Netherlands
| | - Florian T Muijres
- Experimental Zoology Group, Wageningen University, De Elst 1, 6708 WD Wageningen, the Netherlands
| |
Collapse
|
18
|
Connelly SV, Brazeau NF, Msellem M, Ngasala BE, Aydemir Ö, Goel V, Niaré K, Giesbrecht DJ, Popkin-Hall ZR, Hennelly CM, Park Z, Moormann AM, Ong'echa JM, Verity R, Mohammed S, Shija SJ, Mhamilawa LE, Morris U, Mårtensson A, Lin JT, Björkman A, Juliano JJ, Bailey JA. Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2024:2023.02.15.23285960. [PMID: 36865135 PMCID: PMC9980253 DOI: 10.1101/2023.02.15.23285960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
The Zanzibar archipelago of Tanzania has become a low-transmission area for Plasmodium falciparum. Despite being considered an area of pre-elimination for years, achieving elimination has been difficult, likely due to a combination of imported infections from mainland Tanzania, and continued local transmission. To shed light on these sources of transmission, we applied highly multiplexed genotyping utilizing molecular inversion probes to characterize the genetic relatedness of 282 P. falciparum isolates collected across Zanzibar and in Bagamoyo District on the coastal mainland from 2016-2018. Overall, parasite populations on the coastal mainland and Zanzibar archipelago remain highly related. However, parasite isolates from Zanzibar exhibit population microstructure due to rapid decay of parasite relatedness over very short distances. This, along with highly related pairs within shehias, suggests ongoing low level local transmission. We also identified highly related parasites across shehias that reflect human mobility on the main island of Unguja and identified a cluster of highly related parasites, suggestive of an outbreak, in the Micheweni district on Pemba island. Parasites in asymptomatic infections demonstrated higher complexity of infection than those in symptomatic infections, but have similar core genomes. Our data support importation as a main source of genetic diversity and contribution to the parasite population on Zanzibar, but they also show local outbreak clusters where targeted interventions are essential to block local transmission. These results highlight the need for preventive measures against imported malaria and enhanced control measures in areas that remain receptive for malaria reemergence due to susceptible hosts and competent vectors.
Collapse
Affiliation(s)
- Sean V Connelly
- MD-PhD Program, University of North Carolina, Chapel Hill, NC 27599
| | | | - Mwinyi Msellem
- Research Division, Ministry of Health, Zanzibar, Tanzania
| | - Billy E Ngasala
- Department of Parasitology and Medical Entomology, Muhimbili University of Health and Allied Sciences, Dar es Salaam, Tanzania
- Global Health and Migration Unit, Department of Women's and Children's Health, Uppsala University, Uppsala, Sweden
| | - Özkan Aydemir
- Department of Medicine, University of Massachusetts Chan Medical School, Worcester, MA
| | - Varun Goel
- Carolina Population Center, University of North Carolina, Chapel Hill, NC 27599
| | - Karamoko Niaré
- Department of Pathology and Laboratory Medicine, Brown University, Providence, RI, 02912 USA
| | - David J Giesbrecht
- Department of Pathology and Laboratory Medicine, Brown University, Providence, RI, 02912 USA
| | - Zachary R Popkin-Hall
- Institute for Global Health and Infectious Diseases, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599 USA
| | - Christopher M Hennelly
- Institute for Global Health and Infectious Diseases, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599 USA
| | - Zackary Park
- Division of Infectious Diseases, Department of Medicine, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599 USA
| | - Ann M Moormann
- Department of Medicine, University of Massachusetts Chan Medical School, Worcester, MA
| | | | - Robert Verity
- MRC Centre for Global Infectious Disease Analysis, Imperial College, London
| | - Safia Mohammed
- Zanzibar Malaria Elimination Program (ZAMEP), Zanzibar, Tanzania
| | - Shija J Shija
- Zanzibar Malaria Elimination Program (ZAMEP), Zanzibar, Tanzania
| | - Lwidiko E Mhamilawa
- Department of Parasitology and Medical Entomology, Muhimbili University of Health and Allied Sciences, Dar es Salaam, Tanzania
- Global Health and Migration Unit, Department of Women's and Children's Health, Uppsala University, Uppsala, Sweden
| | - Ulrika Morris
- Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, 17177 Stockholm, Sweden
| | - Andreas Mårtensson
- Global Health and Migration Unit, Department of Women's and Children's Health, Uppsala University, Uppsala, Sweden
| | - Jessica T Lin
- Division of Infectious Diseases, Department of Medicine, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599 USA
| | - Anders Björkman
- Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, 17177 Stockholm, Sweden
- Department of Global Public Health, Karolinska Institutet, Stockholm, Sweden
| | - Jonathan J Juliano
- Division of Infectious Diseases, Department of Medicine, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599 USA
- Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, 27599 USA
- Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, NC 27599 USA
| | - Jeffrey A Bailey
- Department of Pathology and Laboratory Medicine, Brown University, Providence, RI, 02912 USA
| |
Collapse
|
19
|
Hedtke SM, Post RJ, Feleke SM, Gebretsadik FS, Boakye DA, Krueger A, Grant WN, Wilding CS. Cytotaxonomic characterization and estimation of migration patterns of onchocerciasis vectors (Simulium damnosum sensu lato) in northwestern Ethiopia based on RADSeq data. PLoS Negl Trop Dis 2024; 18:e0011868. [PMID: 38175836 DOI: 10.1371/journal.pntd.0011868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Revised: 01/17/2024] [Accepted: 12/17/2023] [Indexed: 01/06/2024] Open
Abstract
BACKGROUND While much progress has been made in the control and elimination of onchocerciasis across Africa, the extent to which vector migration might confound progress towards elimination or result in re-establishment of endemism in areas where transmission has been eliminated remains unclear. In Northern Ethiopia, Metema and Metekel-two foci located near the Sudan border-exhibit continuing transmission. While progress towards elimination has been faster in Metema, there remains a problematic hotspot of transmission. Whether migration from Metekel contributes to this is currently unknown. METHODOLOGY/PRINCIPLE FINDINGS To assess the role of vector migration from Metekel into Metema, we present a population genomics study of 151 adult female vectors using 47,638 RADseq markers and mtDNA CoI sequencing. From additional cytotaxonomy data we identified a new cytoform in Metema, closely related to S. damnosum s.str, here called the Gondar form. RADseq data strongly indicate the existence of two distinctly differentiated clusters within S. damnosum s.l.: one genotypic cluster found only in Metema, and the second found predominantly in Metekel. Because blackflies from both clusters were found in sympatry (in all four collection sites in Metema), but hybrid genotypes were not detected, there may be reproductive barriers preventing interbreeding. The dominant genotype in Metema was not found in Metekel while the dominant genotype in Metekel was found in Metema, indicating that (at the time of sampling) migration is primarily unidirectional, with flies moving from Metekel to Metema. There was strong differentiation between clusters but little genetic differentiation within clusters, suggesting migration and gene flow of flies within the same genetic cluster are sufficient to prevent genetic divergence between sites. CONCLUSIONS/SIGNIFICANCE Our results confirm that Metekel and Metema represent different transmission foci, but also indicate a northward movement of vectors between foci that may have epidemiological importance, although its significance requires further study.
Collapse
Affiliation(s)
- Shannon M Hedtke
- Department of Environment and Genetics, School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria, Australia
| | - Rory J Post
- School of Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, United Kingdom
- Disease Control Department, London School of Hygiene and Tropical Medicine, London, United Kingdom
| | | | - Fikre Seife Gebretsadik
- Neglected Tropical Disease Prevention and Control Program, Federal Ministry of Health, Addis Ababa, Ethiopia
| | - Daniel A Boakye
- Parasitology Department, Noguchi Memorial Institute for Medical Research, Accra, Ghana
| | - Andreas Krueger
- Military Hospital Hamburg, Department Tropical Medicine, Hamburg, Germany
| | - Warwick N Grant
- Department of Environment and Genetics, School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria, Australia
| | - Craig S Wilding
- School of Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, United Kingdom
| |
Collapse
|
20
|
Werber Y. Human-wildlife conflicts in the aerial habitat: Wind farms are just the beginning. Sci Prog 2024; 107:368504241231157. [PMID: 38373435 PMCID: PMC10878230 DOI: 10.1177/00368504241231157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2024]
Abstract
The aerial habitat occupies an enormous three-dimensional space around Earth and is inhabited by trillions of animals. Humans have been encroaching on the aerial habitat since the time of the pyramids, but the last century ushered in unprecedented threats to aerial wildlife. Skyscrapers, jet-age transportation and recently huge wind turbines kill millions of flying animals annually and despite substantial efforts, our detection and mitigation capabilities are lagging far behind. Given the situation, our readiness to handle the impact of millions of drones buzzing through the sky carrying batteries, payloads and soon also people, is questionable at best. In radar aero-ecology, radars are used to document and analyse animal movement high above the ground, opening a hatch to ecological processes in the aerial habitat. Differentiating bats from birds, a simple task at ground level, was impossible aloft, which limited our ability to study and characterise high-altitude bat behaviour. Many high-altitude infrastructure developments around the world were thus planned and executed with no regard to possible impacts on bats and caused millions of bat fatalities. BATScan, the first automatic bat identifier for radar, demonstrates how artificial intelligence can be implemented together with ecological insight to solve basic scientific questions and minimise negative human impact on natural habitats. We demonstrate a facet of the complexity of bat aero-ecology using the Israeli BATScan database and substantiate the claim that activities taken by the wind energy industry to minimise bat mortality may prove limited and leave bats unprotected. We further discuss upcoming challenges in the face of a forthcoming transportation revolution that will change the human-aerial wildlife conflict from a conservation concern to a major human safety issue.
Collapse
Affiliation(s)
- Yuval Werber
- Department of Evolutionary and Environmental Biology and Institute of Evolution, University of Haifa, Haifa, Israel
| |
Collapse
|
21
|
Benjamin-Chung J, Li H, Nguyen A, Heitmann GB, Bennett A, Ntuku H, Prach LM, Tambo M, Wu L, Drakeley C, Gosling R, Mumbengegwi D, Kleinschmidt I, Smith JL, Hubbard A, van der Laan M, Hsiang MS. Targeted malaria elimination interventions reduce Plasmodium falciparum infections up to 3 kilometers away. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2023:2023.09.19.23295806. [PMID: 37790419 PMCID: PMC10543053 DOI: 10.1101/2023.09.19.23295806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 10/05/2023]
Abstract
Malaria elimination interventions in low-transmission settings aim to extinguish hot spots and prevent transmission to nearby areas. In malaria elimination settings, the World Health Organization recommends reactive, focal interventions targeted to the area near malaria cases shortly after they are detected. A key question is whether these interventions reduce transmission to nearby uninfected or asymptomatic individuals who did not receive interventions. Here, we measured direct effects (among intervention recipients) and spillover effects (among non-recipients) of reactive, focal interventions delivered within 500m of confirmed malaria index cases in a cluster-randomized trial in Namibia. The trial delivered malaria chemoprevention (artemether lumefantrine) and vector control (indoor residual spraying with Actellic) separately and in combination using a factorial design. We compared incidence, infection prevalence, and seroprevalence between study arms among intervention recipients (direct effects) and non-recipients (spillover effects) up to 3 km away from index cases. We calculated incremental cost-effectiveness ratios accounting for spillover effects. The combined chemoprevention and vector control intervention produced direct effects and spillover effects. In the primary analysis among non-recipients within 1 km from index cases, the combined intervention reduced malaria incidence by 43% (95% CI 20%, 59%). In secondary analyses among non-recipients 500m-3 km from interventions, the combined intervention reduced infection by 79% (6%, 95%) and seroprevalence 34% (20%, 45%). Accounting for spillover effects increased the cost-effectiveness of the combined intervention by 37%. Our findings provide the first evidence that targeting hot spots with combined chemoprevention and vector control interventions can indirectly benefit non-recipients up to 3 km away.
Collapse
Affiliation(s)
- Jade Benjamin-Chung
- Department of Epidemiology and Population Health, Stanford University, Stanford, United States
- Chan Zuckerberg Biohub, San Francisco, United States
| | - Haodong Li
- Division of Biostatistics, University of California, Berkeley
| | - Anna Nguyen
- Department of Epidemiology and Population Health, Stanford University, Stanford, United States
| | | | - Adam Bennett
- Malaria Elimination Initiative, Global Health Group, University of California, San Francisco (UCSF) , San Francisco, United States
- PATH, Seattle, United States
| | - Henry Ntuku
- Malaria Elimination Initiative, Global Health Group, University of California, San Francisco (UCSF) , San Francisco, United States
| | - Lisa M. Prach
- Malaria Elimination Initiative, Global Health Group, University of California, San Francisco (UCSF) , San Francisco, United States
| | - Munyaradzi Tambo
- Multidisciplinary Research Centre, University of Namibia, Windhoek, Namibia
| | - Lindsey Wu
- Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, UK
| | - Chris Drakeley
- Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, UK
| | - Roly Gosling
- Malaria Elimination Initiative, Global Health Group, University of California, San Francisco (UCSF) , San Francisco, United States
- Department of Disease Control, London School of Hygiene and Tropical Medicine, London, UK
| | | | - Immo Kleinschmidt
- MRC International Statistics and Epidemiology Group, Department of Infectious Disease Epidemiology, London School of Hygiene and Tropical Medicine, London, UK
- Wits Research Institute for Malaria, Wits/SAMRC Collaborating Centre for Multi-Disciplinary Research on Malaria, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
- Southern African Development Community Malaria Elimination Eight Secretariat, Windhoek, Namibia
| | - Jennifer L. Smith
- Malaria Elimination Initiative, Global Health Group, University of California, San Francisco (UCSF) , San Francisco, United States
| | - Alan Hubbard
- Division of Biostatistics, University of California, Berkeley
| | | | - Michelle S. Hsiang
- Chan Zuckerberg Biohub, San Francisco, United States
- Malaria Elimination Initiative, Global Health Group, University of California, San Francisco (UCSF) , San Francisco, United States
- Department of Epidemiology and Biostatistics, UCSF, San Francisco, United States
| |
Collapse
|
22
|
Lehmann T, Kouam C, Woo J, Diallo M, Wilkerson R, Linton YM. The African mosquito-borne diseasosome: geographical patterns, range expansion and future disease emergence. Proc Biol Sci 2023; 290:20231581. [PMID: 38018102 PMCID: PMC10685135 DOI: 10.1098/rspb.2023.1581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 10/25/2023] [Indexed: 11/30/2023] Open
Abstract
Mosquito-borne diseases (MBDs) threaten public health and food security globally. We provide the first biogeographic description of the African mosquito fauna (677 species) and the 151 mosquito-borne pathogens (MBPs) they transmit. While mosquito species richness agrees with expectations based on Africa's land surface, African arboviruses and mammalian plasmodia are more speciose than expected. Species assemblages of mosquitoes and MBPs similarly separate sub-Saharan Africa from North Africa, and those in West and Central Africa from eastern and southern Africa. Similarities between mosquitoes and MBPs in diversity and range size suggest that mosquitoes are key in delimiting the range of MBPs. With approximately 25% endemicity, approximately 50% occupying one to three countries and less than 5% occupying greater than 25 countries, the ranges of mosquitoes and MBPs are surprisingly small, suggesting that most MBPs are transmitted by a single mosquito species. Exceptionally widespread mosquito species feed on people and livestock, and most are high-altitude-windborne migrants. Likewise, widespread MBPs are transmitted among people or livestock by widespread mosquitoes, suggesting that adapting to people or livestock and to widespread mosquito species promote range expansion in MBPs. Range size may predict range expansion and emergence risk. We highlight key knowledge gaps that impede prediction and mitigation of future emergence of local and global MBDs.
Collapse
Affiliation(s)
- Tovi Lehmann
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, USA
| | - Cedric Kouam
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, USA
| | - Joshua Woo
- Krieger School of Arts and Sciences, Johns Hopkins University, Baltimore, MD, USA
| | - Mawlouth Diallo
- Pôle de Zoologie Médicale, Institut Pasteur de Dakar, Dakar, Senegal
| | - Richard Wilkerson
- Walter Reed Biosystematics Unit (WRBU), Smithsonian Institution Museum Support Center, Suitland, MD, USA
- Department of Entomology, Smithsonian Institution–National Museum of Natural History, Washington, DC, USA
| | - Yvonne-Marie Linton
- Walter Reed Biosystematics Unit (WRBU), Smithsonian Institution Museum Support Center, Suitland, MD, USA
- Department of Entomology, Smithsonian Institution–National Museum of Natural History, Washington, DC, USA
- One Health Branch, Walter Reed Army Institute of Research (WRAIR), Silver Spring, MD, USA
| |
Collapse
|
23
|
Mwima R, Hui TYJ, Nanteza A, Burt A, Kayondo JK. Potential persistence mechanisms of the major Anopheles gambiae species complex malaria vectors in sub-Saharan Africa: a narrative review. Malar J 2023; 22:336. [PMID: 37936194 PMCID: PMC10631165 DOI: 10.1186/s12936-023-04775-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 10/30/2023] [Indexed: 11/09/2023] Open
Abstract
The source of malaria vector populations that re-establish at the beginning of the rainy season is still unclear yet knowledge of mosquito behaviour is required to effectively institute control measures. Alternative hypotheses like aestivation, local refugia, migration between neighbouring sites, and long-distance migration (LDM) are stipulated to support mosquito persistence. This work assessed the malaria vector persistence dynamics and examined various studies done on vector survival via these hypotheses; aestivation, local refugia, local or long-distance migration across sub-Saharan Africa, explored a range of methods used, ecological parameters and highlighted the knowledge trends and gaps. The results about a particular persistence mechanism that supports the re-establishment of Anopheles gambiae, Anopheles coluzzii or Anopheles arabiensis in sub-Saharan Africa were not conclusive given that each method used had its limitations. For example, the Mark-Release-Recapture (MRR) method whose challenge is a low recapture rate that affects its accuracy, and the use of time series analysis through field collections whose challenge is the uncertainty about whether not finding mosquitoes during the dry season is a weakness of the conventional sampling methods used or because of hidden shelters. This, therefore, calls for further investigations emphasizing the use of ecological experiments under controlled conditions in the laboratory or semi-field, and genetic approaches, as they are known to complement each other. This review, therefore, unveils and assesses the uncertainties that influence the different malaria vector persistence mechanisms and provides recommendations for future studies.
Collapse
Affiliation(s)
- Rita Mwima
- Department of Entomology, Uganda Virus Research Institute (UVRI), Entebbe, Uganda
- Department of Biotechnical and Diagnostic Sciences, College of Veterinary Medicine, Animal Resources and Biosecurity (COVAB), Makerere University, Kampala, Uganda
| | - Tin-Yu J Hui
- Silwood Park Campus, Department of Life Sciences, Imperial College London, Ascot, UK
| | - Ann Nanteza
- Department of Biotechnical and Diagnostic Sciences, College of Veterinary Medicine, Animal Resources and Biosecurity (COVAB), Makerere University, Kampala, Uganda
| | - Austin Burt
- Silwood Park Campus, Department of Life Sciences, Imperial College London, Ascot, UK
| | - Jonathan K Kayondo
- Department of Entomology, Uganda Virus Research Institute (UVRI), Entebbe, Uganda.
| |
Collapse
|
24
|
Dudas G, Batson J. Accumulated metagenomic studies reveal recent migration, whole genome evolution, and undiscovered diversity of orthomyxoviruses. J Virol 2023; 97:e0105623. [PMID: 37830816 PMCID: PMC10653993 DOI: 10.1128/jvi.01056-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 08/29/2023] [Indexed: 10/14/2023] Open
Abstract
IMPORTANCE The number of known virus species has increased dramatically through metagenomic studies, which search genetic material sampled from a host for non-host genes. Here, we focus on an important viral family that includes influenza viruses, the Orthomyxoviridae, with over 100 recently discovered viruses infecting hosts from humans to fish. We find that one virus called Wǔhàn mosquito virus 6, discovered in mosquitoes in China, has spread across the globe very recently. Surface proteins used to enter cells show signs of rapid evolution in Wǔhàn mosquito virus 6 and its relatives which suggests an ability to infect vertebrate animals. We compute the rate at which new orthomyxovirus species discovered add evolutionary history to the tree of life, predict that many viruses remain to be discovered, and discuss what appropriately designed future studies can teach us about how diseases cross between continents and species.
Collapse
Affiliation(s)
- Gytis Dudas
- Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania
| | - Joshua Batson
- Chan Zuckerberg Biohub, San Francisco, California, USA
| |
Collapse
|
25
|
Pan YF, Zhao H, Gou QY, Shi PB, Tian JH, Feng Y, Li K, Yang WH, Wu D, Tang G, Zhang B, Ren Z, Peng S, Luo GY, Le SJ, Xin GY, Wang J, Hou X, Peng MW, Kong JB, Chen XX, Yang CH, Mei SQ, Liao YQ, Cheng JX, Wang J, Chaolemen, Wu YH, Wang JB, An T, Huang X, Eden JS, Li J, Guo D, Liang G, Jin X, Holmes EC, Li B, Wang D, Li J, Wu WC, Shi M. Metagenomic analysis of individual mosquitos reveals the ecology of insect viruses. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.28.555221. [PMID: 37732272 PMCID: PMC10508733 DOI: 10.1101/2023.08.28.555221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/22/2023]
Abstract
Mosquito transmitted viruses are responsible for an increasing burden of human disease. Despite this, little is known about the diversity and ecology of viruses within individual mosquito hosts. Using a meta-transcriptomic approach, we analysed the virome of 2,438 individual mosquitos (79 species), spanning ~4000 km along latitudes and longitudes in China. From these data we identified 393 core viral species associated with mosquitos, including seven (putative) arbovirus species. We identified potential species and geographic hotspots of viral richness and arbovirus occurrence, and demonstrated that host phylogeny had a strong impact on the composition of individual mosquito viromes. Our data revealed a large number of viruses shared among mosquito species or genera, expanding our knowledge of host specificity of insect-associated viruses. We also detected multiple virus species that were widespread throughout the country, possibly facilitated by long-distance mosquito migrations. Together, our results greatly expand the known mosquito virome, linked the viral diversity at the scale of individual insects to that at a country-wide scale, and offered unique insights into the ecology of viruses of insect vectors.
Collapse
Affiliation(s)
- Yuan-fei Pan
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Ministry of Education Key Laboratory of Biodiversity Science and Ecological Engineering, School of Life Sciences, Fudan University, Shanghai 200438, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Hailong Zhao
- BGI Research, Shenzhen 518083, China
- Shenzhen Key Laboratory of Unknown Pathogen Identification, BGI Research, Shenzhen 518083, China
| | - Qin-yu Gou
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Pei-bo Shi
- BGI Research, Shenzhen 518083, China
- Shenzhen Key Laboratory of Unknown Pathogen Identification, BGI Research, Shenzhen 518083, China
- BGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China
| | - Jun-hua Tian
- Wuhan Center for Disease Control and Prevention, Wuhan 430024, China
| | - Yun Feng
- Department of Viral and Rickettsial Disease Control, Yunnan Provincial Key Laboratory for Zoonosis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali 671099, China
| | - Kun Li
- National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China
| | - Wei-hong Yang
- Department of Viral and Rickettsial Disease Control, Yunnan Provincial Key Laboratory for Zoonosis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali 671099, China
| | - De Wu
- Guangdong Provincial Center for Disease Control and Prevention, Guangzhou 511430, China
| | - Guangpeng Tang
- Guizhou Center for Disease Control and Prevention, Guiyang 550004, China
| | - Bing Zhang
- Xinjiang Key Laboratory of Molecular Biology for Endemic Diseases, School of Basic Medical Sciences Xinjiang Medical University, Urumqi 830011, China
| | - Zirui Ren
- BGI Research, Shenzhen 518083, China
- Shenzhen Key Laboratory of Unknown Pathogen Identification, BGI Research, Shenzhen 518083, China
| | - Shiqin Peng
- BGI Research, Shenzhen 518083, China
- Shenzhen Key Laboratory of Unknown Pathogen Identification, BGI Research, Shenzhen 518083, China
| | - Geng-yan Luo
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Shi-jia Le
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Gen-yang Xin
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Jing Wang
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Xin Hou
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Min-wu Peng
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Jian-bin Kong
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Xin-xin Chen
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Chun-hui Yang
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Shi-qiang Mei
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Yu-qi Liao
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Jing-xia Cheng
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Juan Wang
- Department of Viral and Rickettsial Disease Control, Yunnan Provincial Key Laboratory for Zoonosis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali 671099, China
| | - Chaolemen
- Old Barag Banner Center for Disease Control and Prevention, Hulunbuir 021500, China
| | - Yu-hui Wu
- Old Barag Banner Center for Disease Control and Prevention, Hulunbuir 021500, China
| | - Jian-bo Wang
- Hulunbuir Center for Disease Control and Prevention, Hulunbuir 021008, China
| | - Tongqing An
- State Key Laboratory of Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
| | - Xinyi Huang
- State Key Laboratory of Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150069, China
| | - John-Sebastian Eden
- Centre for Virus Research, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia
- Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia
| | - Jun Li
- Department of Infectious Diseases and Public Health, Jockey Club College of Veterinary Medicine and Life Sciences, City University of Hong Kong, Hong Kong, China
| | - Deyin Guo
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Guangzhou National Laboratory, Guangzhou International Bio-Island, Guangzhou 510000, China
| | - Guodong Liang
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China
| | - Xin Jin
- BGI Research, Shenzhen 518083, China
| | - Edward C. Holmes
- Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia
| | - Bo Li
- Ministry of Education Key Laboratory of Biodiversity Science and Ecological Engineering, School of Life Sciences, Fudan University, Shanghai 200438, China
- Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology and Centre for Invasion Biology, School of Ecology and Environmental Science, Yunnan University, Kunming 650504, China
| | - Daxi Wang
- BGI Research, Shenzhen 518083, China
- Shenzhen Key Laboratory of Unknown Pathogen Identification, BGI Research, Shenzhen 518083, China
| | - Junhua Li
- BGI Research, Shenzhen 518083, China
- Shenzhen Key Laboratory of Unknown Pathogen Identification, BGI Research, Shenzhen 518083, China
| | - Wei-chen Wu
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| | - Mang Shi
- State Key Laboratory for Biocontrol, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
- Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University, Shenzhen 518107, China
| |
Collapse
|
26
|
Hall RN, Torpy JR, Nye R, Zalcman E, Cowled BD. A quantitative risk assessment for the incursion of lumpy skin disease virus into Australia via long-distance windborne dispersal of arthropod vectors. Prev Vet Med 2023; 218:105990. [PMID: 37597306 DOI: 10.1016/j.prevetmed.2023.105990] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 07/19/2023] [Accepted: 08/05/2023] [Indexed: 08/21/2023]
Abstract
Lumpy skin disease (LSD) is an infectious disease of cattle and water buffalo caused by lumpy skin disease virus (LSDV). It is primarily transmitted mechanically by biting insects. LSDV has spread from Africa to the Middle-East, the Balkans, Caucasus, Russia, Kazakhstan, China, Asia and India, suggesting that a wide variety of arthropod vectors are capable of mechanical transmission. In 2022, LSD was detected in Indonesia, heightening awareness for Australia's livestock industries. To better understand the risk of LSDV incursion to Australia we undertook a quantitative risk assessment (QRA) looking at windborne dispersal of arthropod vectors, assuming a hypothetical situation where LSD is endemic in south-east Asia and Papua New Guinea. We estimated the risk of LSDV incursion to be low, with a median incursion rate of one incursion every 403 years, based on a model where several infectious insects (i.e. a 'small batch' of 3-5) must bite a single bovine to transmit infection. The incursion risk increases substantially to one incursion every 7-8 years if a bite from a single insect is sufficient for transmission. The risk becomes negligible (one incursion every 20,706 years) if bites from many insects (i.e. a 'large batch' of 30-50 insects) are necessary. Critically, several of our parameter estimates were highly uncertain during sensitivity analyses. Thus, a key outcome of this QRA was to better prioritise surveillance activities and to understand the key research gaps associated with LSDV in the Australasian context. The current literature shows that multiple vectors are required for successful bovine-to-vector transmission of LSDV, suggesting that our estimate of one outbreak every 403 years more accurately represents the risk to Australia; however, the role of single insects in transmission has not yet been evaluated. Similarly, attempts to transmit LSDV between bovines by Culicoides have not been successful, although midges were the highest risk vector category in our model due to the high vector-to-host ratio for midges compared to other vector categories. Our findings provide further insight into the risk of LSD to Australian cattle industries and identify the Tiwi Islands and areas east of Darwin as priority regions for LSDV surveillance, especially between December and March.
Collapse
Affiliation(s)
- Robyn N Hall
- Ausvet Pty Ltd, 5 Shuffrey St, Fremantle, Western Australia, 6160, Australia.
| | - James R Torpy
- Ausvet Pty Ltd, 5 Shuffrey St, Fremantle, Western Australia, 6160, Australia
| | - Rachel Nye
- Ausvet Pty Ltd, 5 Shuffrey St, Fremantle, Western Australia, 6160, Australia
| | - Emma Zalcman
- Ausvet Pty Ltd, 5 Shuffrey St, Fremantle, Western Australia, 6160, Australia
| | - Brendan D Cowled
- Ausvet Pty Ltd, 5 Shuffrey St, Fremantle, Western Australia, 6160, Australia
| |
Collapse
|
27
|
Wilk-da-Silva R, Medeiros-Sousa AR, Mucci LF, Alonso DP, Alvarez MVN, Ribolla PEM, Marrelli MT. Genetic Structuring of One of the Main Vectors of Sylvatic Yellow Fever: Haemagogus ( Conopostegus) leucocelaenus (Diptera: Culicidae). Genes (Basel) 2023; 14:1671. [PMID: 37761811 PMCID: PMC10531017 DOI: 10.3390/genes14091671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 08/18/2023] [Accepted: 08/22/2023] [Indexed: 09/29/2023] Open
Abstract
Genetic diversity and population structuring for the species Haemogogus leucocelaenus, a sylvatic vector of yellow fever virus, were found to vary with the degree of agricultural land use and isolation of fragments of Atlantic Forest in municipalities in the state of São Paulo where specimens were collected. Genotyping of 115 mitochondrial SNPs showed that the populations with the highest indices of genetic diversity (polymorphic loci and mean pairwise differences between the sequences) are found in areas with high levels of agricultural land use (northeast of the State). Most populations exhibited statistically significant negative values for the Tajima D and Fu FS neutrality tests, suggesting recent expansion. The results show an association between genetic diversity in this species and the degree of agricultural land use in the sampled sites, as well as signs of population expansion of this species in most areas, particularly those with the highest forest edge densities. A clear association between population structuring and the distance between the sampled fragments (isolation by distance) was observed: samples from a large fragment of Atlantic Forest extending along the coast of the state of São Paulo exhibited greater similarity with each other than with populations in the northwest of the state.
Collapse
Affiliation(s)
- Ramon Wilk-da-Silva
- Institute of Tropical Medicine, University of São Paulo, São Paulo 05403-000, Brazil
| | - Antônio Ralph Medeiros-Sousa
- Department of Epidemiology, School of Public Health, University of São Paulo, São Paulo 01246-904, Brazil; (A.R.M.-S.); (D.P.A.)
| | - Luis Filipe Mucci
- State Department of Health, Pasteur Institute, São Paulo 01027-000, Brazil;
| | - Diego Peres Alonso
- Department of Epidemiology, School of Public Health, University of São Paulo, São Paulo 01246-904, Brazil; (A.R.M.-S.); (D.P.A.)
- UNESP—Biotechnology Institute and Biosciences Institute, Sao Paulo State University, Botucatu 18618-689, Brazil; (M.V.N.A.); (P.E.M.R.)
| | - Marcus Vinicius Niz Alvarez
- UNESP—Biotechnology Institute and Biosciences Institute, Sao Paulo State University, Botucatu 18618-689, Brazil; (M.V.N.A.); (P.E.M.R.)
| | - Paulo Eduardo Martins Ribolla
- UNESP—Biotechnology Institute and Biosciences Institute, Sao Paulo State University, Botucatu 18618-689, Brazil; (M.V.N.A.); (P.E.M.R.)
| | - Mauro Toledo Marrelli
- Institute of Tropical Medicine, University of São Paulo, São Paulo 05403-000, Brazil
- Department of Epidemiology, School of Public Health, University of São Paulo, São Paulo 01246-904, Brazil; (A.R.M.-S.); (D.P.A.)
| |
Collapse
|
28
|
Bayandin RB, Makenov MT, Boumbaly S, Stukolova OA, Gladysheva AV, Shipovalov AV, Skarnovich MO, Camara O, Toure AH, Svyatchenko VA, Shvalov AN, Ternovoi VA, Boiro MY, Agafonov AP, Karan LS. The First Case of Zika Virus Disease in Guinea: Description, Virus Isolation, Sequencing, and Seroprevalence in Local Population. Viruses 2023; 15:1620. [PMID: 37631963 PMCID: PMC10459603 DOI: 10.3390/v15081620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 07/19/2023] [Accepted: 07/21/2023] [Indexed: 08/29/2023] Open
Abstract
The Zika virus (ZIKV) is a widespread mosquito-borne pathogen. Phylogenetically, two lineages of ZIKV are distinguished: African and Asian-American. The latter became the cause of the 2015-2016 pandemic, with severe consequences for newborns. In West African countries, the African lineage was found, but there is evidence of the emergence of the Asian-American lineage in Cape Verde and Angola. This highlights the need to not only monitor ZIKV but also sequence the isolates. In this article, we present a case report of Zika fever in a pregnant woman from Guinea identified in 2018. Viral RNA was detected through qRT-PCR in a serum sample. In addition, the seroconversion of anti-Zika IgM and IgG antibodies was detected in repeated blood samples. Subsequently, the virus was isolated from the C6/36 cell line. The detected ZIKV belonged to the African lineage, the Nigerian sublineage. The strains with the closest sequences were isolated from mosquitoes in Senegal in 2011 and 2015. In addition, we conducted the serological screening of 116 blood samples collected from patients presenting to the hospital of Faranah with fevers during the period 2018-2021. As a result, it was found that IgM-positive patients were identified each year and that the seroprevalence varied between 5.6% and 17.1%.
Collapse
Affiliation(s)
- Roman B. Bayandin
- State Research Center of Virology and Biotechnology «Vector», 630559 Kol’tsovo, Novosibirsk Oblast, Russia (M.O.S.)
| | - Marat T. Makenov
- Central Research Institute of Epidemiology, Novogireevskaya St. 3A, 111123 Moscow, Russia
| | - Sanaba Boumbaly
- Virology Research Center/Laboratory of Viral Hemorrhagic Fevers, Conakry, Guinea
| | - Olga A. Stukolova
- Central Research Institute of Epidemiology, Novogireevskaya St. 3A, 111123 Moscow, Russia
| | - Anastasia V. Gladysheva
- State Research Center of Virology and Biotechnology «Vector», 630559 Kol’tsovo, Novosibirsk Oblast, Russia (M.O.S.)
| | - Andrey V. Shipovalov
- State Research Center of Virology and Biotechnology «Vector», 630559 Kol’tsovo, Novosibirsk Oblast, Russia (M.O.S.)
| | - Maksim O. Skarnovich
- State Research Center of Virology and Biotechnology «Vector», 630559 Kol’tsovo, Novosibirsk Oblast, Russia (M.O.S.)
| | | | - Aboubacar Hady Toure
- Research Institute of Applied Biology of Guinea, Pastoria, CREMS, Kindia, Guinea
| | - Victor A. Svyatchenko
- State Research Center of Virology and Biotechnology «Vector», 630559 Kol’tsovo, Novosibirsk Oblast, Russia (M.O.S.)
| | - Alexander N. Shvalov
- State Research Center of Virology and Biotechnology «Vector», 630559 Kol’tsovo, Novosibirsk Oblast, Russia (M.O.S.)
| | - Vladimir A. Ternovoi
- State Research Center of Virology and Biotechnology «Vector», 630559 Kol’tsovo, Novosibirsk Oblast, Russia (M.O.S.)
| | - Mamadou Y. Boiro
- Research Institute of Applied Biology of Guinea, Pastoria, CREMS, Kindia, Guinea
| | - Alexander P. Agafonov
- State Research Center of Virology and Biotechnology «Vector», 630559 Kol’tsovo, Novosibirsk Oblast, Russia (M.O.S.)
| | - Lyudmila S. Karan
- Central Research Institute of Epidemiology, Novogireevskaya St. 3A, 111123 Moscow, Russia
| |
Collapse
|
29
|
Atieli HE, Zhou G, Zhong D, Wang X, Lee MC, Yaro AS, Diallo M, Githure J, Kazura J, Lehmann T, Yan G. Wind-assisted high-altitude dispersal of mosquitoes and other insects in East Africa. JOURNAL OF MEDICAL ENTOMOLOGY 2023; 60:698-707. [PMID: 37094808 PMCID: PMC10337859 DOI: 10.1093/jme/tjad033] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 03/12/2023] [Accepted: 03/22/2023] [Indexed: 05/03/2023]
Abstract
Knowledge of insect dispersal is relevant to the control of agricultural pests, vector-borne transmission of human and veterinary pathogens, and insect biodiversity. Previous studies in a malaria endemic area of the Sahel region in West Africa revealed high-altitude, long-distance migration of insects and various mosquito species. The objective of the current study was to assess whether similar behavior is exhibited by mosquitoes and other insects around the Lake Victoria basin region of Kenya in East Africa. Insects were sampled monthly from dusk to dawn over 1 year using sticky nets suspended on a tethered helium-filled balloon. A total of 17,883 insects were caught on nets tethered at 90, 120, and 160 m above ground level; 818 insects were caught in control nets. Small insects (<0.5 cm, n = 15,250) were predominant regardless of height compared with large insects (>0.5 cm, n = 2,334) and mosquitoes (n = 299). Seven orders were identified; dipteran was the most common. Barcoding molecular assays of 184 mosquitoes identified 7 genera, with Culex being the most common (65.8%) and Anopheles being the least common (5.4%). The survival rate of mosquitoes, experimentally exposed to high-altitude overnight, was significantly lower than controls maintained in the laboratory (19% vs. 85%). There were no significant differences in mosquito survival and oviposition rate according to capture height. These data suggest that windborne dispersal activity of mosquito vectors of malaria and other diseases occurs on a broad scale in sub-Saharan Africa.
Collapse
Affiliation(s)
- Harrysone E Atieli
- Sub-Saharan International Center of Excellence for Malaria Research, Tom Mboya University, Homa Bay, Kenya
| | - Guofa Zhou
- Program in Public Health, University of California, Irvine, CA, USA
| | - Daibin Zhong
- Program in Public Health, University of California, Irvine, CA, USA
| | - Xiaoming Wang
- Program in Public Health, University of California, Irvine, CA, USA
| | - Ming-chieh Lee
- Program in Public Health, University of California, Irvine, CA, USA
| | - Alpha S Yaro
- Malaria Research and Training Center (MRTC)/Faculty of Medicine, Pharmacy and Odonto-Stomatology, Bamako, Mali
| | - Moussa Diallo
- Malaria Research and Training Center (MRTC)/Faculty of Medicine, Pharmacy and Odonto-Stomatology, Bamako, Mali
| | - John Githure
- Sub-Saharan International Center of Excellence for Malaria Research, Tom Mboya University, Homa Bay, Kenya
| | - James Kazura
- Center for Global Health and Diseases, School of Medicine, Case Western Reserve University, Cleveland, OH, USA
| | - Tovi Lehmann
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, USA
| | - Guiyun Yan
- Program in Public Health, University of California, Irvine, CA, USA
| |
Collapse
|
30
|
Smith CCR, Tittes S, Ralph PL, Kern AD. Dispersal inference from population genetic variation using a convolutional neural network. Genetics 2023; 224:iyad068. [PMID: 37052957 PMCID: PMC10213498 DOI: 10.1093/genetics/iyad068] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 02/08/2023] [Accepted: 04/07/2023] [Indexed: 04/14/2023] Open
Abstract
The geographic nature of biological dispersal shapes patterns of genetic variation over landscapes, making it possible to infer properties of dispersal from genetic variation data. Here, we present an inference tool that uses geographically distributed genotype data in combination with a convolutional neural network to estimate a critical population parameter: the mean per-generation dispersal distance. Using extensive simulation, we show that our deep learning approach is competitive with or outperforms state-of-the-art methods, particularly at small sample sizes. In addition, we evaluate varying nuisance parameters during training-including population density, demographic history, habitat size, and sampling area-and show that this strategy is effective for estimating dispersal distance when other model parameters are unknown. Whereas competing methods depend on information about local population density or accurate inference of identity-by-descent tracts, our method uses only single-nucleotide-polymorphism data and the spatial scale of sampling as input. Strikingly, and unlike other methods, our method does not use the geographic coordinates of the genotyped individuals. These features make our method, which we call "disperseNN," a potentially valuable new tool for estimating dispersal distance in nonmodel systems with whole genome data or reduced representation data. We apply disperseNN to 12 different species with publicly available data, yielding reasonable estimates for most species. Importantly, our method estimated consistently larger dispersal distances than mark-recapture calculations in the same species, which may be due to the limited geographic sampling area covered by some mark-recapture studies. Thus genetic tools like ours complement direct methods for improving our understanding of dispersal.
Collapse
Affiliation(s)
- Chris C R Smith
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
| | - Silas Tittes
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
| | - Peter L Ralph
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
| | - Andrew D Kern
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
| |
Collapse
|
31
|
Liu Q, Cui F, Liu X, Fu Y, Fang W, Kang X, Lu H, Li S, Liu B, Guo W, Xia Q, Kang L, Jiang F. Association of virome dynamics with mosquito species and environmental factors. MICROBIOME 2023; 11:101. [PMID: 37158937 PMCID: PMC10165777 DOI: 10.1186/s40168-023-01556-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Accepted: 04/20/2023] [Indexed: 05/10/2023]
Abstract
BACKGROUND The pathogenic viruses transmitted by mosquitoes cause a variety of animal and human diseases and public health concerns. Virome surveillance is important for the discovery, and control of mosquito-borne pathogenic viruses, as well as early warning systems. Virome composition in mosquitoes is affected by mosquito species, food source, and geographic region. However, the complex associations of virome composition remain largely unknown. RESULTS Here, we profiled the high-depth RNA viromes of 15 species of field-caught adult mosquitoes, especially from Culex, Aedes, Anopheles, and Armigeres in Hainan Island from 2018 to 2020. We detected 57 known and 39 novel viruses belonging to 15 families. We established the associations of the RNA viruses with mosquito species and their foods, indicating the importance of feeding acquisition of RNA viruses in determining virome composition. A large fraction of RNA viruses were persistent in the same mosquito species across the 3 years and different locations, showing the species-specific stability of viromes in Hainan Island. In contrast, the virome compositions of single mosquito species in different geographic regions worldwide are visibly distinct. This is consistent with the differences in food sources of mosquitoes distributed broadly across continents. CONCLUSIONS Thus, species-specific viromes in a relatively small area are limited by viral interspecific competition and food sources, whereas the viromes of mosquito species in large geographic regions may be governed by ecological interactions between mosquitoes and local environmental factors. Video Abstract.
Collapse
Affiliation(s)
- Qing Liu
- Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, China
| | - Feng Cui
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Xiang Liu
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Yumei Fu
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
- NHC Key Laboratory of Tropical Disease Control, Key Laboratory of Tropical Translational Medicine of Ministry of Education, School of Tropical Medicine, Hainan Medical University, Haikou, Hainan, China
| | - Wenjing Fang
- Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China
| | - Xun Kang
- NHC Key Laboratory of Tropical Disease Control, Key Laboratory of Tropical Translational Medicine of Ministry of Education, School of Tropical Medicine, Hainan Medical University, Haikou, Hainan, China
| | - Hong Lu
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Siping Li
- NHC Key Laboratory of Tropical Disease Control, Key Laboratory of Tropical Translational Medicine of Ministry of Education, School of Tropical Medicine, Hainan Medical University, Haikou, Hainan, China
| | - Biao Liu
- NHC Key Laboratory of Tropical Disease Control, Key Laboratory of Tropical Translational Medicine of Ministry of Education, School of Tropical Medicine, Hainan Medical University, Haikou, Hainan, China
| | - Wei Guo
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Qianfeng Xia
- NHC Key Laboratory of Tropical Disease Control, Key Laboratory of Tropical Translational Medicine of Ministry of Education, School of Tropical Medicine, Hainan Medical University, Haikou, Hainan, China.
| | - Le Kang
- Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China.
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, China.
| | - Feng Jiang
- Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China.
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, China.
| |
Collapse
|
32
|
Feifei L, Hairong L, Linsheng Y, Li W, Lijuan G, Gemei Z, Lan Z. The spatial-temporal pattern of Japanese encephalitis and its influencing factors in Guangxi, China. INFECTION, GENETICS AND EVOLUTION : JOURNAL OF MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS IN INFECTIOUS DISEASES 2023; 111:105433. [PMID: 37037290 DOI: 10.1016/j.meegid.2023.105433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Revised: 04/01/2023] [Accepted: 04/06/2023] [Indexed: 04/12/2023]
Abstract
Japanese encephalitis (JE) is a major global public health threat. Using Japanese encephalitis incidence data from 2004 to 2010 in Guangxi Province, China, this study comprehensively explored the driving forces and the interactive effects between environmental and social factors of Japanese encephalitis using the Geo-detector method. The results indicated that the incidence of Japanese encephalitis showed a fluctuating downward trend from 2004 to 2010. The onset of JE was seasonal, mainly concentrated in June-July, and highly aggregated in northwestern Guangxi. Among the factors associated with Japanese encephalitis, days with temperatures >30 °C, accumulated temperatures >25 °C, slope, the normalized difference vegetation index, the gross domestic product of tertiary industries, the gross domestic product of primary industries and the number of pigs slaughtered showed higher contributions to Japanese encephalitis incidence. An enhanced interactive effect was found between environmental and social factors, and the interaction between days with humidity levels >80% and the gross domestic product of tertiary industries had the greatest combined effect on JE. These findings enhanced the understanding of the combined effect of social and environmental factors on the incidence of Japanese encephalitis and could help improve Japanese encephalitis transmission control and prevention strategies.
Collapse
Affiliation(s)
- Li Feifei
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Li Hairong
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Yang Linsheng
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Wang Li
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Gu Lijuan
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China.
| | - Zhong Gemei
- Guangxi Center for Disease Prevention and Control, Guangxi 530000, China
| | - Zhang Lan
- National Institute of Environmental Health, China CDC, Beijing 100021, China
| |
Collapse
|
33
|
Li T, Yang G, Li Q, Jiang Y, Kang D, Fan Z, Gong Z, Lu R, Zhou G, Wu Y, Lu C. Population dynamics of migrant wheat aphids in China's main wheat production region and their interactions with bacterial symbionts. FRONTIERS IN PLANT SCIENCE 2023; 14:1103236. [PMID: 36844098 PMCID: PMC9947703 DOI: 10.3389/fpls.2023.1103236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/20/2022] [Accepted: 01/27/2023] [Indexed: 06/18/2023]
Abstract
Sitobion miscanthi, Rhopalosiphum padi, and Schizaphis graminum are the three main pests in Chinese wheat-producing regions. In 2020, they are classified into the Chinese Class I list of agricultural diseases and pests, due to their severe harm to wheat plantings. S. miscanthi, R. padi, and S. graminum are migrant pests, and understanding their migration patterns and simulating their migration trajectories would improve forecasting and controlling them. Furthermore, the bacterial community of the migrant wheat aphid is also less known. In this study, we employed a suction trap to uncover the migration patterns of the three wheat aphid species in Yuanyang county, Henan province, during 2018 to 2020. And then the migration trajectories of S. miscanthi and R. padi were simulated using the NOAA HYSPLIT model. The interactions between wheat aphids and bacteria were further revealed by specific PCR and 16S rRNA amplicon sequencing. The results showed that the population dynamics of migrant wheat aphids was varied. Most of the trapped samples were identified to be R. padi, and S. graminum was the least collected sample. Typically, R. padi had two migration peaks in the 3 years, whereas S. miscanthi and S. graminum only exhibited one migration peak in 2018 and 2019. Moreover, the aphid migration trajectories varied over the years. Generally, the aphids originated from the south and migrated to the north. Herein, the infections of three main aphid facultative bacterial symbionts, Serratia symbiotica, Hamiltonella defensa, and Regiella insercticola, were detected in S. miscanthi and R. padi with specific PCR. Rickettsiella, Arsenophonus, Rickettsia, and Wolbachia were further identified with 16S rRNA amplicon sequencing. Biomarker searching indicated that Arsenophonus was significantly enriched in R. padi. Furthermore, diversity analyses showed that the bacterial community of R. padi had a higher richness and evenness than that of S. miscanthi. In conclusion, this study expands our knowledge about the migration patterns of aphids in the main wheat plant region of China and reveals the interactions between bacterial symbionts and migrant aphids.
Collapse
Affiliation(s)
- Tong Li
- Institute of Plant Protection/Henan Key Laboratory of Crop Pest Control/Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Henan Academy of Agricultural Sciences, Zhengzhou, China
| | - Gongqiang Yang
- Institute of Plant Protection/Henan Key Laboratory of Crop Pest Control/Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Henan Academy of Agricultural Sciences, Zhengzhou, China
| | - Qian Li
- College of Bioscience and Resource Environment/Key Laboratory of Urban Agriculture (North China), Ministry of Agriculture and Rural Affairs of the People’s Republic of China, Beijing University of Agriculture, Beijing, China
| | - Yueli Jiang
- Institute of Plant Protection/Henan Key Laboratory of Crop Pest Control/Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Henan Academy of Agricultural Sciences, Zhengzhou, China
| | - Dongmei Kang
- Institute of Plant Protection/Henan Key Laboratory of Crop Pest Control/Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Henan Academy of Agricultural Sciences, Zhengzhou, China
| | - Zhiye Fan
- Institute of Plant Protection, Luohe Institute of Agricultural Sciences, Luohe, China
| | - Zhongjun Gong
- Institute of Plant Protection/Henan Key Laboratory of Crop Pest Control/Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Henan Academy of Agricultural Sciences, Zhengzhou, China
| | - Ruijie Lu
- Institute of Plant Protection/Henan Key Laboratory of Crop Pest Control/Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Henan Academy of Agricultural Sciences, Zhengzhou, China
| | - Guotao Zhou
- Henan Yunfei Technology Development Co., Ltd, Zhengzhou, China
| | - Yuqing Wu
- Institute of Plant Protection/Henan Key Laboratory of Crop Pest Control/Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Henan Academy of Agricultural Sciences, Zhengzhou, China
| | - Chuantao Lu
- Institute of Plant Protection/Henan Key Laboratory of Crop Pest Control/Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Henan Academy of Agricultural Sciences, Zhengzhou, China
| |
Collapse
|
34
|
Stadler E, Cromer D, Ogunlade S, Ongoiba A, Doumbo S, Kayentao K, Traore B, Crompton PD, Portugal S, Davenport MP, Khoury DS. Evidence for exposure dependent carriage of malaria parasites across the dry season: modelling analysis of longitudinal data. Malar J 2023; 22:42. [PMID: 36737743 PMCID: PMC9898990 DOI: 10.1186/s12936-023-04461-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 01/17/2023] [Indexed: 02/05/2023] Open
Abstract
BACKGROUND In malaria endemic regions, transmission of Plasmodium falciparum parasites is often seasonal with very low transmission during the dry season and high transmission in the wet season. Parasites survive the dry season within some individuals who experience prolonged carriage of parasites and are thought to 'seed' infection in the next transmission season. METHODS Dry season carriers and their role in the subsequent transmission season are characterized using a combination of mathematical simulations and data analysis of previously described data from a longitudinal study in Mali of individuals aged 3 months-12 years (n = 579). RESULTS Simulating the life-history of individuals experiencing repeated exposure to infection predicts that dry season carriage is more likely in the oldest, most exposed and most immune individuals. This hypothesis is supported by the data from Mali, which shows that carriers are significantly older, experience a higher biting rate at the beginning of the transmission season and develop clinical malaria later than non-carriers. Further, since the most exposed individuals in a community are most likely to be dry season carriers, this is predicted to enable a more than twofold faster spread of parasites into the mosquito population at the start of the subsequent wet season. CONCLUSIONS Carriage of malaria parasites over the months-long dry season in Mali is most likely in the older, more exposed and more immune children. These children may act as super-spreaders facilitating the fast spread of parasites at the beginning of the next transmission season.
Collapse
Affiliation(s)
- Eva Stadler
- grid.1005.40000 0004 4902 0432The Kirby Institute, UNSW Sydney, Sydney, NSW 2052 Australia
| | - Deborah Cromer
- grid.1005.40000 0004 4902 0432The Kirby Institute, UNSW Sydney, Sydney, NSW 2052 Australia
| | - Samson Ogunlade
- grid.1005.40000 0004 4902 0432The Kirby Institute, UNSW Sydney, Sydney, NSW 2052 Australia
| | - Aissata Ongoiba
- grid.461088.30000 0004 0567 336XMalaria Research and Training Centre, Department of Epidemiology of Parasitic Diseases, International Center of Excellence in Research, University of Sciences, Technique, and Technology of Bamako, 91094 Bamako, Mali
| | - Safiatou Doumbo
- grid.461088.30000 0004 0567 336XMalaria Research and Training Centre, Department of Epidemiology of Parasitic Diseases, International Center of Excellence in Research, University of Sciences, Technique, and Technology of Bamako, 91094 Bamako, Mali
| | - Kassoum Kayentao
- grid.461088.30000 0004 0567 336XMalaria Research and Training Centre, Department of Epidemiology of Parasitic Diseases, International Center of Excellence in Research, University of Sciences, Technique, and Technology of Bamako, 91094 Bamako, Mali
| | - Boubacar Traore
- grid.461088.30000 0004 0567 336XMalaria Research and Training Centre, Department of Epidemiology of Parasitic Diseases, International Center of Excellence in Research, University of Sciences, Technique, and Technology of Bamako, 91094 Bamako, Mali
| | - Peter D. Crompton
- grid.419681.30000 0001 2164 9667Malaria Infection Biology and Immunity Section, Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, USA
| | - Silvia Portugal
- grid.419681.30000 0001 2164 9667Malaria Infection Biology and Immunity Section, Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, USA
| | - Miles P. Davenport
- grid.1005.40000 0004 4902 0432The Kirby Institute, UNSW Sydney, Sydney, NSW 2052 Australia
| | - David S. Khoury
- grid.1005.40000 0004 4902 0432The Kirby Institute, UNSW Sydney, Sydney, NSW 2052 Australia
| |
Collapse
|
35
|
Carlson CJ, Bannon E, Mendenhall E, Newfield T, Bansal S. Rapid range shifts in African Anopheles mosquitoes over the last century. Biol Lett 2023; 19:20220365. [PMID: 36789530 PMCID: PMC9929507 DOI: 10.1098/rsbl.2022.0365] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023] Open
Abstract
Facing a warming climate, many tropical species-including the arthropod vectors of several infectious diseases-will be displaced to higher latitudes and elevations. These shifts are frequently projected for the future, but rarely documented in the present day. Here, we use one of the most comprehensive datasets ever compiled by medical entomologists to track the observed range limits of African malaria mosquito vectors (Anopheles spp.) from 1898 to 2016. Using a simple regression approach, we estimate that these species' ranges gained an average of 6.5 m of elevation per year, and the southern limits of their ranges moved polewards 4.7 km per year. These shifts would be consistent with the local velocity of recent climate change, and might help explain the incursion of malaria transmission into new areas over the past few decades. Confirming that climate change underlies these shifts, and applying similar methods to other disease vectors, are important directions for future research.
Collapse
Affiliation(s)
- Colin J Carlson
- Department of Biology, Georgetown University, Washington, DC 20057, USA
| | - Ellen Bannon
- Science, Technology, and International Affairs Program, Edmund A. Walsh School of Foreign Service, Georgetown University, Washington, DC 20057, USA
| | - Emily Mendenhall
- Science, Technology, and International Affairs Program, Edmund A. Walsh School of Foreign Service, Georgetown University, Washington, DC 20057, USA
| | - Timothy Newfield
- Department of Biology, Georgetown University, Washington, DC 20057, USA.,Department of History, Georgetown University, Washington, DC 20057, USA
| | - Shweta Bansal
- Department of Biology, Georgetown University, Washington, DC 20057, USA
| |
Collapse
|
36
|
Benoit JB, McCluney KE, DeGennaro MJ, Dow JAT. Dehydration Dynamics in Terrestrial Arthropods: From Water Sensing to Trophic Interactions. ANNUAL REVIEW OF ENTOMOLOGY 2023; 68:129-149. [PMID: 36270273 PMCID: PMC9936378 DOI: 10.1146/annurev-ento-120120-091609] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Since the transition from water to land, maintaining water balance has been a key challenge for terrestrial arthropods. We explore factors that allow terrestrial arthropods to survive within a variably dry world and how they shape ecological interactions. Detection of water and hydration is critical for maintaining water content. Efficient regulation of internal water content is accomplished by excretory and osmoregulatory systems that balance water intake and loss. Biochemical and physiological responses are necessary as water content declines to prevent and repair the damage that occurs during dehydration. Desiccation avoidance can occur seasonally or daily via a move to more favorable areas. Dehydration and its avoidance have ecological impacts that extend beyond a single species to alter trophic interactions. As climate changes, evolutionary and ecological processes will be critical to species survival during drought.
Collapse
Affiliation(s)
- Joshua B Benoit
- Department of Biological Sciences, University of Cincinnati, Cincinnati, Ohio, USA;
| | - Kevin E McCluney
- Department of Biological Sciences, Bowling Green State University, Bowling Green, Ohio, USA;
| | - Matthew J DeGennaro
- Department of Biological Sciences, Florida International University and Biomolecular Sciences Institute, Miami, Florida, USA;
| | - Julian A T Dow
- Institute of Molecular, Cell and Systems Biology, University of Glasgow, United Kingdom;
| |
Collapse
|
37
|
Ahn J, Sinka M, Irish S, Zohdy S. Modeling marine cargo traffic to identify countries in Africa with greatest risk of invasion by Anopheles stephensi. Sci Rep 2023; 13:876. [PMID: 36650185 PMCID: PMC9843102 DOI: 10.1038/s41598-023-27439-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2022] [Accepted: 01/02/2023] [Indexed: 01/18/2023] Open
Abstract
Anopheles stephensi, an invasive malaria vector native to South Asia and the Arabian Peninsula, was detected in Djibouti's seaport, followed by Ethiopia, Sudan, Somalia, and Nigeria. If An. stephensi introduction is facilitated through seatrade, similar to other invasive mosquitoes, the identification of at-risk countries are needed to increase surveillance and response efforts. Bilateral maritime trade data is used to (1) identify coastal African countries which were highly connected to select An. stephensi endemic countries, (2) develop a prioritization list of countries based on the likelihood of An. stephensi introduction through maritime trade index (LASIMTI), and (3) use network analysis of intracontinental maritime trade to determine likely introduction pathways. Sudan and Djibouti were ranked as the top two countries with LASIMTI in 2011, which were the first two coastal African countries where An. stephensi was detected. With Djibouti and Sudan included as source populations, 2020 data identify Egypt, Kenya, Mauritius, Tanzania, and Morocco as the top countries with LASIMTI. Network analysis highlight South Africa, Mauritius, Ghana, and Togo. These tools can prioritize efforts for An. stephensi surveillance and control in Africa. Surveillance in seaports of identified countries may limit further expansion of An. stephensi by serving as an early warning system.
Collapse
Affiliation(s)
- Jordan Ahn
- Rollins School of Public Health, Emory University, Atlanta, GA, USA
- Centers for Disease Control and Prevention, Atlanta, GA, USA
| | | | - Seth Irish
- Centers for Disease Control and Prevention, Atlanta, GA, USA
- Swiss Tropical and Public Health Institute, Allschwil, Switzerland
- US President's Malaria Initiative, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Sarah Zohdy
- Centers for Disease Control and Prevention, Atlanta, GA, USA.
- US President's Malaria Initiative, Centers for Disease Control and Prevention, Atlanta, GA, USA.
| |
Collapse
|
38
|
Wang J, Huang Y, Huang L, Dong Y, Huang W, Ma H, Zhang H, Zhang X, Chen X, Xu Y. Migration risk of fall armyworm ( Spodoptera frugiperda) from North Africa to Southern Europe. FRONTIERS IN PLANT SCIENCE 2023; 14:1141470. [PMID: 37077648 PMCID: PMC10106561 DOI: 10.3389/fpls.2023.1141470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 03/22/2023] [Indexed: 05/03/2023]
Abstract
With the development of globalization and agriculture trade, as well as its own strong migratory capacity, fall armyworm (FAW) (Spodoptera frugiperda) (J.E. Smith) has invaded more than 70 countries, posing a serious threat to the production of major crops in these areas. FAW has now also been detected in Egypt in North Africa, putting Europe, which is separated from it only by the Mediterranean Sea, at high risk of invasion. Therefore, this study integrated multiple factors of insect source, host plant, and environment to provide a risk analysis of the potential trajectories and time periods of migration of FAW into Europe in 2016~2022. First, the CLIMEX model was used to predict the annual and seasonal suitable distribution of FAW. The HYSPLIT numerical trajectory model was then used to simulate the possibility of the FAW invasion of Europe through wind-driven dispersal. The results showed that the risk of FAW invasion between years was highly consistent (P<0.001). Coastal areas were most suitable for the expansion of the FAW, and Spain and Italy had the highest risk of invasion, with 39.08% and 32.20% of effective landing points respectively. Dynamic migration prediction based on spatio-temporal data can enable early warning of FAW, which is important for joint multinational pest management and crop protection.
Collapse
Affiliation(s)
- Jing Wang
- National Engineering Research Center for Agro-Ecological Big Data Analysis and Application, Anhui University, Hefei, China
| | - Yanru Huang
- Key Laboratory of Digital Earth Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing, China
- International Research Center of Big Data for Sustainable Development Goals, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Linsheng Huang
- National Engineering Research Center for Agro-Ecological Big Data Analysis and Application, Anhui University, Hefei, China
- *Correspondence: Linsheng Huang, ; Yingying Dong,
| | - Yingying Dong
- Key Laboratory of Digital Earth Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing, China
- International Research Center of Big Data for Sustainable Development Goals, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
- *Correspondence: Linsheng Huang, ; Yingying Dong,
| | - Wenjiang Huang
- Key Laboratory of Digital Earth Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing, China
- International Research Center of Big Data for Sustainable Development Goals, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Huiqin Ma
- School of Automation, Hangzhou Dianzi University, Hangzhou, China
| | - Hansu Zhang
- National Engineering Research Center for Agro-Ecological Big Data Analysis and Application, Anhui University, Hefei, China
| | - Xueyan Zhang
- College of Plant Protection, Nanjing Agricultural University, Nanjing, China
| | - Xinyu Chen
- National Engineering Research Center for Agro-Ecological Big Data Analysis and Application, Anhui University, Hefei, China
| | - Yunlei Xu
- National Engineering Research Center for Agro-Ecological Big Data Analysis and Application, Anhui University, Hefei, China
| |
Collapse
|
39
|
Tian F, He J, Shang S, Chen Z, Tang Y, Lu M, Huang C, Guo X, Tong Y. Survey of mosquito species and mosquito-borne viruses in residential areas along the Sino-Vietnam border in Yunnan Province in China. Front Microbiol 2023; 14:1105786. [PMID: 36910188 PMCID: PMC9996012 DOI: 10.3389/fmicb.2023.1105786] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Accepted: 01/30/2023] [Indexed: 02/25/2023] Open
Abstract
Mosquitoes are capable of carrying complex pathogens, and their feeding habits on the mammalian blood can easily mediate the spread of viruses. Surveillance of mosquito-based arbovirus enables the early prevention and control of mosquito-borne arboviral diseases. The climate and geography of Yunnan Province in China are ideal for mosquitoes. Yunnan shares borders with several other countries; therefore, there exists a high risk of international transmission of mosquito-mediated infectious diseases. Previous studies have focused more on the Sino-Laos and Sino-Myanmar borders. Therefore, we focused on the neighborhoods of Malipo and Funing counties in Wenshan Prefecture, Yunnan Province, China, which are located along the Sino-Vietnam border, to investigate the species of mosquitoes and mosquito-borne viruses in the residential areas of this region. This study collected 10,800 mosquitoes from 29 species of 8 genera and grouped to isolate mosquito-borne viruses. In total, 62 isolates were isolated and classified into 11 viral categories. We demonstrated a new distribution of mosquito-borne viruses among mosquitoes in border areas, including Tembusu and Getah viruses, which can cause animal outbreaks. In addition, Dak Nong and Sarawak viruses originating from Vietnam and Malaysia, respectively, were identified for the first time in China, highlighting the complexity of mosquito-borne viruses in the Sino-Vietnam border region. The awareness of the importance of viral surveillance and prevention measures in border areas should be further encouraged to prevent future outbreaks of potentially infectious diseases.
Collapse
Affiliation(s)
- Fengjuan Tian
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, China
| | - Jimin He
- The Second Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China
| | - Shanlin Shang
- Malipo County Center for Disease Control and Prevention, Wenshanzhou, Yunnan, China
| | - Zhongyan Chen
- Malipo County Center for Disease Control and Prevention, Wenshanzhou, Yunnan, China
| | - Yumei Tang
- Funing County Center for Disease Control and Prevention, Wenshanzhou, Yunnan, China
| | - Man Lu
- Funing County Center for Disease Control and Prevention, Wenshanzhou, Yunnan, China
| | - Changzhi Huang
- Funing County Center for Disease Control and Prevention, Wenshanzhou, Yunnan, China
| | - Xiaofang Guo
- Yunnan Provincial Key Laboratory of Vector-borne Disease Control and Research, Yunnan Institute of Parasitic Diseases Control, Puer, Yunnan, China
| | - Yigang Tong
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, China
| |
Collapse
|
40
|
Dried out but alive: how mosquitoes survive 8 months. Trends Parasitol 2023; 39:1-3. [PMID: 36470782 DOI: 10.1016/j.pt.2022.11.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 11/21/2022] [Indexed: 12/05/2022]
Abstract
How malaria mosquitoes persist during the dry season in the Sahel and rapidly rebound at the onset of rains is unclear. Recently, Faiman and colleagues demonstrated that aestivation, a summer dormancy mechanism, is a major persistence strategy of Anopheles mosquitoes, which could be targeted by vector control.
Collapse
|
41
|
Zhu J, Chen X, Liu J, Jiang Y, Chen F, Lu J, Chen H, Zhai B, Reynolds DR, Chapman JW, Hu G. A cold high-pressure system over North China hinders the southward migration of Mythimna separata in autumn. MOVEMENT ECOLOGY 2022; 10:54. [PMID: 36457049 PMCID: PMC9716675 DOI: 10.1186/s40462-022-00360-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 11/29/2022] [Indexed: 06/17/2023]
Abstract
BACKGROUND In warm regions or seasons of the year, the planetary boundary layer is occupied by a huge variety and quantity of insects, but the southward migration of insects (in East Asia) in autumn is still poorly understood. METHODS We collated daily catches of the oriental armyworm (Mythimna separata) moth from 20 searchlight traps from 2014 to 2017 in China. In order to explore the autumn migratory connectivity of M. separata in East China, we analyzed the autumn climate and simulated the autumn migration process of moths. RESULTS The results confirmed that northward moth migration in spring and summer under the East Asian monsoon system can bring rapid population growth. However, slow southerly wind (blowing towards the north) prevailed over the major summer breeding area in North China (33°-40° N) due to a cold high-pressure system located there, and this severely disrupts the autumn 'return' migration of this pest. Less than 8% of moths from the summer breeding area successfully migrated back to their winter-breeding region, resulting in a sharp decline of the population abundance in autumn. As northerly winds (blowing towards the south) predominate at the eastern periphery of a high-pressure system, the westward movement of the high-pressure system leads to more northerlies over North China, increasing the numbers of moths migrating southward successfully. Therefore, an outbreak year of M. separata larvae was associated with a more westward position of the high-pressure system during the previous autumn. CONCLUSION These results indicate that the southward migration in autumn is crucial for sustaining pest populations of M. separata, and the position of the cold high-pressure system in September is a key environmental driver of the population size in the next year. This study indicates that the autumn migration of insects in East China is more complex than previously recognized, and that the meteorological conditions in autumn are an important driver of migratory insects' seasonal and interannual population dynamics.
Collapse
Affiliation(s)
- Jian Zhu
- Department of Entomology, Nanjing Agricultural University, 1 Weigang Road, Nanjing, 210095, China
- State Key Laboratory of Biological Interactions and Crop Health, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xiao Chen
- College of Life Science, International Cooperative Research Centre for Cross-Border Pest Management in Central Asia, Xinjiang Normal University, Urumqi, 830054, China
| | - Jie Liu
- China National Agro-Tech Extension and Service Center, Beijing, 100125, China
| | - Yuying Jiang
- China National Agro-Tech Extension and Service Center, Beijing, 100125, China
| | - Fajun Chen
- Department of Entomology, Nanjing Agricultural University, 1 Weigang Road, Nanjing, 210095, China
| | - Jiahao Lu
- Department of Entomology, Nanjing Agricultural University, 1 Weigang Road, Nanjing, 210095, China
- State Key Laboratory of Biological Interactions and Crop Health, Nanjing Agricultural University, Nanjing, 210095, China
- Songjiang District Agro-Technology Extension Center, Shanghai, 201613, China
| | - Hui Chen
- Department of Entomology, Nanjing Agricultural University, 1 Weigang Road, Nanjing, 210095, China
- State Key Laboratory of Biological Interactions and Crop Health, Nanjing Agricultural University, Nanjing, 210095, China
| | - Baoping Zhai
- Department of Entomology, Nanjing Agricultural University, 1 Weigang Road, Nanjing, 210095, China
| | - Don R Reynolds
- Natural Resources Institute, University of Greenwich, Chatham, ME4 4TB, UK
- Rothamsted Research, Harpenden, AL5 2JQ, UK
| | - Jason W Chapman
- Department of Entomology, Nanjing Agricultural University, 1 Weigang Road, Nanjing, 210095, China
- Centre of Ecology and Conservation, and Environment and Sustainability Institute, University of Exeter, Penryn, Cornwall, TR10 9FE, UK
| | - Gao Hu
- Department of Entomology, Nanjing Agricultural University, 1 Weigang Road, Nanjing, 210095, China.
- State Key Laboratory of Biological Interactions and Crop Health, Nanjing Agricultural University, Nanjing, 210095, China.
| |
Collapse
|
42
|
Tondossama N, Coulibaly ZI, Traoré I, Ako BA, Zoh DD, Virgillito C, Guindo-Coulibaly N, Serini P, Assouho FK, Dia I, Touré AO, Adja MA, Caputo B, della Torre A, Pichler V. High Levels of Admixture in Anopheles gambiae Populations from Côte d'Ivoire Revealed by Multilocus Genotyping. INSECTS 2022; 13:1090. [PMID: 36555000 PMCID: PMC9782310 DOI: 10.3390/insects13121090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/29/2022] [Revised: 11/22/2022] [Accepted: 11/23/2022] [Indexed: 06/17/2023]
Abstract
Anopheles coluzzii and An. gambiae-the two most recently radiated species of the An. gambiae complex and the major Afrotropical malaria vector species-are identified by markers in the X-centromeric IGS rDNA region. Putative IGS-hybrids are rarely found in the field, except in restricted areas where genomic studies have led to the hypothesis that the observed IGS-patterns are due to cryptic taxa rather than to hybridization between the two species. We investigated the genome-wide levels of admixture in two villages in Côte d'Ivoire where high levels of IGS-hybrids have been detected, confirming unparalleled high frequencies in the coastal village. Genotyping of 24 Ancestry Informative Markers (AIMs) along the three chromosomes produced discordant results between the IGS-marker and the multilocus genotype obtained for AIMs across the whole genome (29%) as well as AIMs on chromosome-X (considered to be fundamental for species reproductive isolation) only (21%). Results highlight a complicated pattern of admixture that deserves deeper genomic analyses to understand better possible underlying causes (from extensive processes of hybridization to the existence of different cryptic taxa), and stress the need of developing advanced diagnostics for An. coluzzii, An. gambiae and putative new taxa, instrumental for assessing taxon-specific epidemiological characters.
Collapse
Affiliation(s)
- Naminata Tondossama
- Laboratoire de Biologie et Santé, UFR Biosciences, Université Félix Houphouet Boigny Cocody, Abidjan 01 BP V34, Côte d’Ivoire
- Entomology and Herpetology Unit, Institut Pasteur de Côte d’Ivoire, Abidjan 01 PB 490, Côte d’Ivoire
| | - Zanakoungo I. Coulibaly
- Entomology and Herpetology Unit, Institut Pasteur de Côte d’Ivoire, Abidjan 01 PB 490, Côte d’Ivoire
| | - Issouf Traoré
- Laboratoire de Biologie et Santé, UFR Biosciences, Université Félix Houphouet Boigny Cocody, Abidjan 01 BP V34, Côte d’Ivoire
- Entomology and Herpetology Unit, Institut Pasteur de Côte d’Ivoire, Abidjan 01 PB 490, Côte d’Ivoire
| | - Bérenger A. Ako
- Malaria Unit, Institut Pasteur de Côte d’Ivoire, Abidjan 01 PB 490, Côte d’Ivoire
| | - Danielle D. Zoh
- Laboratoire de Biologie et Santé, UFR Biosciences, Université Félix Houphouet Boigny Cocody, Abidjan 01 BP V34, Côte d’Ivoire
- Institut Pierre Richet/Institut National de Santé Publique, Bouaké 01 BP 1500, Côte d’Ivoire
| | - Chiara Virgillito
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma “La Sapienza,” Piazzale Aldo Moro, 5, 00185 Rome, Italy
| | - Négnorogo Guindo-Coulibaly
- Laboratoire de Biologie et Santé, UFR Biosciences, Université Félix Houphouet Boigny Cocody, Abidjan 01 BP V34, Côte d’Ivoire
| | - Paola Serini
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma “La Sapienza,” Piazzale Aldo Moro, 5, 00185 Rome, Italy
| | - Fabrice K. Assouho
- Institut Pierre Richet/Institut National de Santé Publique, Bouaké 01 BP 1500, Côte d’Ivoire
| | - Ibrahima Dia
- Pôle de Zoologie Médicale, Institut Pasteur de Dakar, 36 Avenue Pasteur, Dakar BP 220, Senegal
| | - Andre O. Touré
- Malaria Unit, Institut Pasteur de Côte d’Ivoire, Abidjan 01 PB 490, Côte d’Ivoire
| | - Maurice A. Adja
- Laboratoire de Biologie et Santé, UFR Biosciences, Université Félix Houphouet Boigny Cocody, Abidjan 01 BP V34, Côte d’Ivoire
- Institut Pierre Richet/Institut National de Santé Publique, Bouaké 01 BP 1500, Côte d’Ivoire
| | - Beniamino Caputo
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma “La Sapienza,” Piazzale Aldo Moro, 5, 00185 Rome, Italy
| | - Alessandra della Torre
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma “La Sapienza,” Piazzale Aldo Moro, 5, 00185 Rome, Italy
| | - Verena Pichler
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma “La Sapienza,” Piazzale Aldo Moro, 5, 00185 Rome, Italy
| |
Collapse
|
43
|
Stresman G, DePina AJ, Nelli L, Monteiro DDS, Leal SDV, Moreira AL, Furtado UD, Roka JCL, Neatherlin J, Gomes C, Tfeil AK, Lindblade KA. Factors related to human-vector contact that modify the likelihood of malaria transmission during a contained Plasmodium falciparum outbreak in Praia, Cabo Verde. FRONTIERS IN EPIDEMIOLOGY 2022; 2:1031230. [PMID: 38455281 PMCID: PMC10910924 DOI: 10.3389/fepid.2022.1031230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 11/10/2022] [Indexed: 03/09/2024]
Abstract
Background Determining the reproductive rate and how it varies over time and space (RT) provides important insight to understand transmission of a given disease and inform optimal strategies for controlling or eliminating it. Estimating RT for malaria is difficult partly due to the widespread use of interventions and immunity to disease masking incident infections. A malaria outbreak in Praia, Cabo Verde in 2017 provided a unique opportunity to estimate RT directly, providing a proxy for the intensity of vector-human contact and measure the impact of vector control measures. Methods Out of 442 confirmed malaria cases reported in 2017 in Praia, 321 (73%) were geolocated and informed this analysis. RT was calculated using the joint likelihood of transmission between two cases, based on the time (serial interval) and physical distance (spatial interval) between them. Log-linear regression was used to estimate factors associated with changes in RT, including the impact of vector control interventions. A geostatistical model was developed to highlight areas receptive to transmission where vector control activities could be focused in future to prevent or interrupt transmission. Results The RT from individual cases ranged between 0 and 11 with a median serial- and spatial-interval of 34 days [interquartile range (IQR): 17-52] and 1,347 m (IQR: 832-1,985 m), respectively. The number of households receiving indoor residual spraying (IRS) 4 weeks prior was associated with a reduction in RT by 0.84 [95% confidence interval (CI) 0.80-0.89; p-value <0.001] in the peak-and post-epidemic compared to the pre-epidemic period. Conclusions Identifying the effect of reduced human-vector contact through IRS is essential to determining optimal intervention strategies that modify the likelihood of malaria transmission and can inform optimal intervention strategies to accelerate time to elimination. The distance within which two cases are plausibly linked is important for the potential scale of any reactive interventions as well as classifying infections as imported or introduced and confirming malaria elimination.
Collapse
Affiliation(s)
- Gillian Stresman
- Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, United Kingdom
- College of Public Health, University of South Florida, Tampa, FL, United States
| | | | - Luca Nelli
- School of Biodiversity, One Health, and Veterinary Medicine, University of Glasgow, Glasgow, United Kingdom
| | | | - Silvânia da Veiga Leal
- Laboratório de Entomologia Médica, Instituto Nacional de Saúde Pública, Praia, Cabo Verde
| | | | | | | | - John Neatherlin
- U.S. Centers for Disease Control and Prevention, Atlanta, GA, United States
| | | | | | | |
Collapse
|
44
|
Hoque MM, Valentine MJ, Kelly PJ, Barua S, Murillo DFB, Wang C. Modification of the Folmer primers for the cytochrome c oxidase gene facilitates identification of mosquitoes. Parasit Vectors 2022; 15:437. [PMID: 36419198 PMCID: PMC9682724 DOI: 10.1186/s13071-022-05494-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 09/17/2022] [Indexed: 11/24/2022] Open
Abstract
BACKGROUND Accurate identification of mosquito species is essential for the development and optimization of strategies to control mosquitoes and mosquito-borne diseases. Problems with the morphological identification of mosquito species have led to the use of molecular identification techniques, in particular the Folmer cytochrome c oxidase subunit I (COI) PCR system (FCOS), originally designed to identify a range of other invertebrates. METHODS As there can be difficulties identifying mosquitoes using FCOS, we re-evaluated the FCOS primers and developed a new COI-based SYBR PCR (the Auburn COI system-AUCOS) to improve the molecular identification of mosquitoes. Sequence data in GenBank for 33 species from 10 genera of mosquitoes were used to develop our AUCOS primers. Two molecular assays (AUCOS, FCOS) and morphological identification were carried out on mosquitoes collected from the field in Auburn, Alabama (USA) and on Saint Kitts. RESULTS With a convenience sample of individual mosquitoes comprising 19 species from six genera in Saint Kitts (n = 77) and Auburn (n = 48), our AUCOS provided higher-quality sequence data than FCOS. It also proved more sensitive than FCOS, successfully amplifying 67.5% (85/126) as opposed to 16.7% (21/126) of the samples. The species determined by morphology, or genus with damaged samples, matched that as determined by AUCOS for 84.9% (62/73) of the samples. Morphological classification was confirmed by FCOS with 81.0% (17/21) of samples producing utilizable sequences. While both FCOS and AUCOS correctly identified all the Aedes, Anopheles, Deinocerites, and Uranotaenia species in the study, identification of Culex species was less successful with both methods: 50.0% (3/6) by FCOS and 35.7% (5/14) by AUCOS. CONCLUSIONS The AUCOS DNA barcoding system for mosquito species described in this study is superior to the existing FCOS for the identification of mosquito species. As AUCOS and FCOS amplify the same variable region of the COI, the large amount of existing data on GenBank can be used to identify mosquito species with sequences produced by either PCR.
Collapse
Affiliation(s)
- Md Monirul Hoque
- grid.252546.20000 0001 2297 8753College of Veterinary Medicine, College of Veterinary Medicine, Auburn University, Auburn, AL 36849-5519 USA
| | | | | | - Subarna Barua
- grid.252546.20000 0001 2297 8753College of Veterinary Medicine, College of Veterinary Medicine, Auburn University, Auburn, AL 36849-5519 USA
| | - Daniel Felipe Barrantes Murillo
- grid.252546.20000 0001 2297 8753College of Veterinary Medicine, College of Veterinary Medicine, Auburn University, Auburn, AL 36849-5519 USA
| | - Chengming Wang
- grid.252546.20000 0001 2297 8753College of Veterinary Medicine, College of Veterinary Medicine, Auburn University, Auburn, AL 36849-5519 USA
| |
Collapse
|
45
|
Faiman R, Yaro AS, Dao A, Sanogo ZL, Diallo M, Samake D, Yossi O, Veru LM, Graber LC, Conte AR, Kouam C, Krajacich BJ, Lehmann T. Isotopic evidence that aestivation allows malaria mosquitoes to persist through the dry season in the Sahel. Nat Ecol Evol 2022; 6:1687-1699. [PMID: 36216903 DOI: 10.1038/s41559-022-01886-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Accepted: 08/11/2022] [Indexed: 11/09/2022]
Abstract
Data suggest that the malaria vector mosquito Anopheles coluzzii persists during the dry season in the Sahel through a dormancy mechanism known as aestivation; however, the contribution of aestivation compared with alternative strategies such as migration is unknown. Here we marked larval Anopheles mosquitoes in two Sahelian villages in Mali using deuterium (2H) to assess the contribution of aestivation to persistence of mosquitoes through the seven-month dry season. After an initial enrichment period, 33% of An. coluzzii mosquitoes were strongly marked. Seven months following enrichment, multiple analysis methods supported the ongoing presence of marked mosquitoes, compatible with the prediction that the fraction of marked mosquitoes should remain stable throughout the dry season if local aestivation is occurring. The results suggest that aestivation is a major persistence mechanism of An. coluzzii in the Sahel, contributing at least 20% of the adults at the onset of rains. This persistence strategy could influence mosquito control and malaria elimination campaigns.
Collapse
Affiliation(s)
- Roy Faiman
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, USA.
| | - Alpha S Yaro
- Malaria Research and Training Center (MRTC)/Faculty of Medicine, Pharmacy and Odonto-stomatology, University of Sciences, Techniques and Technologies of Bamako, Bamako, Mali
| | - Adama Dao
- Malaria Research and Training Center (MRTC)/Faculty of Medicine, Pharmacy and Odonto-stomatology, University of Sciences, Techniques and Technologies of Bamako, Bamako, Mali
| | - Zana L Sanogo
- Malaria Research and Training Center (MRTC)/Faculty of Medicine, Pharmacy and Odonto-stomatology, University of Sciences, Techniques and Technologies of Bamako, Bamako, Mali
| | - Moussa Diallo
- Malaria Research and Training Center (MRTC)/Faculty of Medicine, Pharmacy and Odonto-stomatology, University of Sciences, Techniques and Technologies of Bamako, Bamako, Mali
| | - Djibril Samake
- Malaria Research and Training Center (MRTC)/Faculty of Medicine, Pharmacy and Odonto-stomatology, University of Sciences, Techniques and Technologies of Bamako, Bamako, Mali
| | - Ousmane Yossi
- Malaria Research and Training Center (MRTC)/Faculty of Medicine, Pharmacy and Odonto-stomatology, University of Sciences, Techniques and Technologies of Bamako, Bamako, Mali
| | - Laura M Veru
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, USA
| | - Leland C Graber
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, USA
| | - Abigail R Conte
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, USA
| | - Cedric Kouam
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, USA
| | | | - Tovi Lehmann
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, USA
| |
Collapse
|
46
|
Yaro AS, Linton YM, Dao A, Diallo M, Sanogo ZL, Samake D, Ousmane Y, Kouam C, Krajacich BJ, Faiman R, Bamou R, Woo J, Chapman JW, Reynolds DR, Lehmann T. Diversity, composition, altitude, and seasonality of high-altitude windborne migrating mosquitoes in the Sahel: Implications for disease transmission. FRONTIERS IN EPIDEMIOLOGY 2022; 2:1001782. [PMID: 38455321 PMCID: PMC10910920 DOI: 10.3389/fepid.2022.1001782] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Accepted: 09/16/2022] [Indexed: 03/09/2024]
Abstract
Recent studies have reported Anopheles mosquitoes captured at high-altitude (40-290 m above ground) in the Sahel. Here, we describe this migration modality across genera and species of African Culicidae and examine its implications for disease transmission and control. As well as Anopheles, six other genera-Culex, Aedes, Mansonia, Mimomyia, Lutzia, and Eretmapodites comprised 90% of the 2,340 mosquitoes captured at altitude. Of the 50 molecularly confirmed species (N = 2,107), 33 species represented by multiple specimens were conservatively considered high-altitude windborne migrants, suggesting it is a common migration modality in mosquitoes (31-47% of the known species in Mali), and especially in Culex (45-59%). Overall species abundance varied between 2 and 710 specimens/species (in Ae. vittatus and Cx. perexiguus, respectively). At altitude, females outnumbered males 6:1, and 93% of the females have taken at least one blood meal on a vertebrate host prior to their departure. Most taxa were more common at higher sampling altitudes, indicating that total abundance and diversity are underestimated. High-altitude flight activity was concentrated between June and November coinciding with availability of surface waters and peak disease transmission by mosquitoes. These hallmarks of windborne mosquito migration bolster their role as carriers of mosquito-borne pathogens (MBPs). Screening 921 mosquitoes using pan-Plasmodium assays revealed that thoracic infection rate in these high-altitude migrants was 2.4%, providing a proof of concept that vertebrate pathogens are transported by windborne mosquitoes at altitude. Fourteen of the 33 windborne mosquito species had been reported as vectors to 25 MBPs in West Africa, which represent 32% of the MBPs known in that region and include those that inflict the heaviest burden on human and animal health, such as malaria, yellow fever, dengue, and Rift Valley fever. We highlight five arboviruses that are most likely affected by windborne mosquitoes in West Africa: Rift Valley fever, O'nyong'nyong, Ngari, Pangola, and Ndumu. We conclude that the study of windborne spread of diseases by migrating insects and the development of surveillance to map the sources, routes, and destinations of vectors and pathogens is key to understand, predict, and mitigate existing and new threats of public health.
Collapse
Affiliation(s)
- Alpha Seydou Yaro
- Malaria Research and Training Center (MRTC), Faculty of Medicine, Pharmacy and Odonto-Stomatology, Bamako, Mali
| | - Yvonne-Marie Linton
- Walter Reed Biosystematics Unit, Smithsonian Institution Museum Support Center, Suitland, MD, United States
- Department of Entomology, Smithsonian Institution, National Museum of Natural History, Washington, DC, United States
- One Health Branch, Walter Reed Army Institute of Research, Silver Spring, MD, United States
| | - Adama Dao
- Malaria Research and Training Center (MRTC), Faculty of Medicine, Pharmacy and Odonto-Stomatology, Bamako, Mali
| | - Moussa Diallo
- Malaria Research and Training Center (MRTC), Faculty of Medicine, Pharmacy and Odonto-Stomatology, Bamako, Mali
| | - Zana L. Sanogo
- Malaria Research and Training Center (MRTC), Faculty of Medicine, Pharmacy and Odonto-Stomatology, Bamako, Mali
| | - Djibril Samake
- Malaria Research and Training Center (MRTC), Faculty of Medicine, Pharmacy and Odonto-Stomatology, Bamako, Mali
| | - Yossi Ousmane
- Malaria Research and Training Center (MRTC), Faculty of Medicine, Pharmacy and Odonto-Stomatology, Bamako, Mali
| | - Cedric Kouam
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, United States
| | | | - Roy Faiman
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, United States
| | - Roland Bamou
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, United States
| | - Joshua Woo
- Krieger School of Arts and Sciences, Johns Hopkins University, Baltimore, MD, United States
| | - Jason W. Chapman
- Centre for Ecology and Conservation, and Environment and Sustainability Institute, University of Exeter, Penryn, United Kingdom
- Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, China
| | - Don R. Reynolds
- Natural Resources Institute, University of Greenwich, Chatham, United Kingdom
- Rothamsted Research, Harpenden, United Kingdom
| | - Tovi Lehmann
- Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, United States
| |
Collapse
|
47
|
Resolving malaria's dry-season dilemma. Nat Ecol Evol 2022; 6:1593-1594. [PMID: 36216904 DOI: 10.1038/s41559-022-01832-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
48
|
Leung S, Windbichler N, Wenger EA, Bever CA, Selvaraj P. Population replacement gene drive characteristics for malaria elimination in a range of seasonal transmission settings: a modelling study. Malar J 2022; 21:226. [PMID: 35883100 PMCID: PMC9327287 DOI: 10.1186/s12936-022-04242-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Accepted: 07/11/2022] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Gene drives are a genetic engineering method where a suite of genes is inherited at higher than Mendelian rates and has been proposed as a promising new vector control strategy to reinvigorate the fight against malaria in sub-Saharan Africa. METHODS Using an agent-based model of malaria transmission with vector genetics, the impacts of releasing population-replacement gene drive mosquitoes on malaria transmission are examined and the population replacement gene drive system parameters required to achieve local elimination within a spatially-resolved, seasonal Sahelian setting are quantified. The performance of two different gene drive systems-"classic" and "integral"-are evaluated. Various transmission regimes (low, moderate, and high-corresponding to annual entomological inoculation rates of 10, 30, and 80 infectious bites per person) and other simultaneous interventions, including deployment of insecticide-treated nets (ITNs) and passive healthcare-seeking, are also simulated. RESULTS Local elimination probabilities decreased with pre-existing population target site resistance frequency, increased with transmission-blocking effectiveness of the introduced antiparasitic gene and drive efficiency, and were context dependent with respect to fitness costs associated with the introduced gene. Of the four parameters, transmission-blocking effectiveness may be the most important to focus on for improvements to future gene drive strains because a single release of classic gene drive mosquitoes is likely to locally eliminate malaria in low to moderate transmission settings only when transmission-blocking effectiveness is very high (above ~ 80-90%). However, simultaneously deploying ITNs and releasing integral rather than classic gene drive mosquitoes significantly boosts elimination probabilities, such that elimination remains highly likely in low to moderate transmission regimes down to transmission-blocking effectiveness values as low as ~ 50% and in high transmission regimes with transmission-blocking effectiveness values above ~ 80-90%. CONCLUSION A single release of currently achievable population replacement gene drive mosquitoes, in combination with traditional forms of vector control, can likely locally eliminate malaria in low to moderate transmission regimes within the Sahel. In a high transmission regime, higher levels of transmission-blocking effectiveness than are currently available may be required.
Collapse
Affiliation(s)
- Shirley Leung
- Institute for Disease Modeling, Bill & Melinda Gates Foundation, Seattle, WA, USA
| | - Nikolai Windbichler
- Department of Life Sciences, Imperial College London, South Kensington, London, UK
| | - Edward A Wenger
- Institute for Disease Modeling, Bill & Melinda Gates Foundation, Seattle, WA, USA
| | - Caitlin A Bever
- Institute for Disease Modeling, Bill & Melinda Gates Foundation, Seattle, WA, USA
| | - Prashanth Selvaraj
- Institute for Disease Modeling, Bill & Melinda Gates Foundation, Seattle, WA, USA.
| |
Collapse
|
49
|
Sedda L, McCann RS, Kabaghe AN, Gowelo S, Mburu MM, Tizifa TA, Chipeta MG, van den Berg H, Takken W, van Vugt M, Phiri KS, Cain R, Tangena JAA, Jones CM. Hotspots and super-spreaders: Modelling fine-scale malaria parasite transmission using mosquito flight behaviour. PLoS Pathog 2022; 18:e1010622. [PMID: 35793345 PMCID: PMC9292116 DOI: 10.1371/journal.ppat.1010622] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Revised: 07/18/2022] [Accepted: 05/27/2022] [Indexed: 11/19/2022] Open
Abstract
Malaria hotspots have been the focus of public health managers for several years due to the potential elimination gains that can be obtained from targeting them. The identification of hotspots must be accompanied by the description of the overall network of stable and unstable hotspots of malaria, especially in medium and low transmission settings where malaria elimination is targeted. Targeting hotspots with malaria control interventions has, so far, not produced expected benefits. In this work we have employed a mechanistic-stochastic algorithm to identify clusters of super-spreader houses and their related stable hotspots by accounting for mosquito flight capabilities and the spatial configuration of malaria infections at the house level. Our results show that the number of super-spreading houses and hotspots is dependent on the spatial configuration of the villages. In addition, super-spreaders are also associated to house characteristics such as livestock and family composition. We found that most of the transmission is associated with winds between 6pm and 10pm although later hours are also important. Mixed mosquito flight (downwind and upwind both with random components) were the most likely movements causing the spread of malaria in two out of the three study areas. Finally, our algorithm (named MALSWOTS) provided an estimate of the speed of malaria infection progression from house to house which was around 200-400 meters per day, a figure coherent with mark-release-recapture studies of Anopheles dispersion. Cross validation using an out-of-sample procedure showed accurate identification of hotspots. Our findings provide a significant contribution towards the identification and development of optimal tools for efficient and effective spatio-temporal targeted malaria interventions over potential hotspot areas.
Collapse
Affiliation(s)
- Luigi Sedda
- Lancaster Ecology and Epidemiology Group, Lancaster Medical School, Lancaster University, United Kingdom
| | - Robert S. McCann
- Laboratory of Entomology, Wageningen University & Research, Wageningen, The Netherlands
- School of Global and Public Health, Kamuzu University of Health Sciences, Blantyre, Malawi
- Center for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, Maryland, United States of America
| | - Alinune N. Kabaghe
- School of Global and Public Health, Kamuzu University of Health Sciences, Blantyre, Malawi
| | - Steven Gowelo
- Laboratory of Entomology, Wageningen University & Research, Wageningen, The Netherlands
- School of Global and Public Health, Kamuzu University of Health Sciences, Blantyre, Malawi
- MAC Communicable Diseases Action Centre, Kamuzu University of Health Sciences, Blantyre, Malawi
| | - Monicah M. Mburu
- Laboratory of Entomology, Wageningen University & Research, Wageningen, The Netherlands
- School of Global and Public Health, Kamuzu University of Health Sciences, Blantyre, Malawi
| | - Tinashe A. Tizifa
- School of Global and Public Health, Kamuzu University of Health Sciences, Blantyre, Malawi
- Center for Tropical Medicine and Travel Medicine, University of Amsterdam, The Netherlands
| | - Michael G. Chipeta
- School of Global and Public Health, Kamuzu University of Health Sciences, Blantyre, Malawi
- Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Blantyre, Malawi
| | - Henk van den Berg
- Laboratory of Entomology, Wageningen University & Research, Wageningen, The Netherlands
| | - Willem Takken
- Laboratory of Entomology, Wageningen University & Research, Wageningen, The Netherlands
| | - Michèle van Vugt
- Center for Tropical Medicine and Travel Medicine, University of Amsterdam, The Netherlands
| | - Kamija S. Phiri
- School of Global and Public Health, Kamuzu University of Health Sciences, Blantyre, Malawi
| | - Russell Cain
- Lancaster Ecology and Epidemiology Group, Lancaster Medical School, Lancaster University, United Kingdom
| | - Julie-Anne A. Tangena
- Vector Biology Department, Liverpool School of Tropical Medicine, Liverpool, United Kingdom
| | - Christopher M. Jones
- Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Blantyre, Malawi
- Vector Biology Department, Liverpool School of Tropical Medicine, Liverpool, United Kingdom
| |
Collapse
|
50
|
Beeton NJ, Wilkins A, Ickowicz A, Hayes KR, Hosack GR. Spatial modelling for population replacement of mosquito vectors at continental scale. PLoS Comput Biol 2022; 18:e1009526. [PMID: 35648783 PMCID: PMC9191746 DOI: 10.1371/journal.pcbi.1009526] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Revised: 06/13/2022] [Accepted: 04/22/2022] [Indexed: 11/24/2022] Open
Abstract
Malaria is one of the deadliest vector-borne diseases in the world. Researchers are developing new genetic and conventional vector control strategies to attempt to limit its burden. Novel control strategies require detailed safety assessment to ensure responsible and successful deployments. Anopheles gambiae sensu stricto (s.s.) and Anopheles coluzzii, two closely related subspecies within the species complex Anopheles gambiae sensu lato (s.l.), are among the dominant malaria vectors in sub-Saharan Africa. These two subspecies readily hybridise and compete in the wild and are also known to have distinct niches, each with spatially and temporally varying carrying capacities driven by precipitation and land use factors. We model the spread and persistence of a population-modifying gene drive system in these subspecies across sub-Saharan Africa by simulating introductions of genetically modified mosquitoes across the African mainland and its offshore islands. We explore transmission of the gene drive between the two subspecies that arise from different hybridisation mechanisms, the effects of both local dispersal and potential wind-aided migration to the spread, and the development of resistance to the gene drive. Given the best current available knowledge on the subspecies’ life histories, we find that an introduced gene drive system with typical characteristics can plausibly spread from even distant offshore islands to the African mainland with the aid of wind-driven migration, with resistance beginning to take over within a decade. Our model accounts for regional to continental scale mechanisms, and demonstrates a range of realistic dynamics including the effect of prevailing wind on spread and spatio-temporally varying carrying capacities for subspecies. As a result, it is well-placed to answer future questions relating to mosquito gene drives as important life history parameters become better understood. Conventional control methods have dramatically reduced malaria, but it still kills over 300,000 children in Africa each year, and this number could increase as their effectiveness wanes. Novel control methods using gene drives rapidly reduce or modify malaria vector populations in laboratory settings, and hence are now being considered for field applications. We use modelling to assess how a gene drive might spread and persist in the malaria-carrying subspecies Anopheles gambiae sensu stricto (s.s.) and Anopheles coluzzii. These two subspecies interbreed and compete, so we model how these interactions affect the spread of the drive at a continental scale. In scenarios that allow mosquitoes to travel on prevailing wind currents, we find that a gene drive can potentially spread across national borders—and jump from offshore islands to the African mainland—but spread is eventually arrested when the drive allele is ousted by a resistant allele. As we learn more about the population dynamics of both genetically modified and wild mosquitoes, and as gene drive systems are further developed to allow local containment and evade resistance, our model will be able to answer more detailed questions about how they can be applied in the field effectively and safely.
Collapse
Affiliation(s)
- Nicholas J. Beeton
- Data61, CSIRO, 3 Castray Esplanade, Battery Point TAS, Australia
- * E-mail: (NJB); (AW)
| | - Andrew Wilkins
- Mineral Resources, CSIRO, 1 Technology Court, Pullenvale QLD, Australia
- * E-mail: (NJB); (AW)
| | - Adrien Ickowicz
- Data61, CSIRO, 3 Castray Esplanade, Battery Point TAS, Australia
| | - Keith R. Hayes
- Data61, CSIRO, 3 Castray Esplanade, Battery Point TAS, Australia
| | | |
Collapse
|