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Gessler A, Wieloch T, Saurer M, Lehmann MM, Werner RA, Kammerer B. The marriage between stable isotope ecology and plant metabolomics - new perspectives for metabolic flux analysis and the interpretation of ecological archives. THE NEW PHYTOLOGIST 2024. [PMID: 39021246 DOI: 10.1111/nph.19973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Accepted: 07/01/2024] [Indexed: 07/20/2024]
Abstract
Even though they share many thematical overlaps, plant metabolomics and stable isotope ecology have been rather separate fields mainly due to different mass spectrometry demands. New high-resolution bioanalytical mass spectrometers are now not only offering high-throughput metabolite identification but are also suitable for compound- and intramolecular position-specific isotope analysis in the natural isotope abundance range. In plant metabolomics, label-free metabolic pathway and metabolic flux analysis might become possible when applying this new technology. This is because changes in the commitment of substrates to particular metabolic pathways and the activation or deactivation of others alter enzyme-specific isotope effects. This leads to differences in intramolecular and compound-specific isotope compositions. In plant isotope ecology, position-specific isotope analysis in plant archives informed by metabolic pathway analysis could be used to reconstruct and separate environmental impacts on complex metabolic processes. A technology-driven linkage between the two disciplines could allow to extract information on environment-metabolism interaction from plant archives such as tree rings but also within ecosystems. This would contribute to a holistic understanding of how plants react to environmental drivers, thus also providing helpful information on the trajectories of the vegetation under the conditions to come.
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Affiliation(s)
- Arthur Gessler
- Institute of Terrestrial Ecosystems, ETH Zurich, 8092, Zurich, Switzerland
- Ecosystem Ecology, Swiss Federal Research Institute WSL, 8903, Birmensdorf, Switzerland
| | - Thomas Wieloch
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, 91125, USA
- Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå Plant Science Centre, 90736, Umeå, Sweden
| | - Matthias Saurer
- Ecosystem Ecology, Swiss Federal Research Institute WSL, 8903, Birmensdorf, Switzerland
| | - Marco M Lehmann
- Ecosystem Ecology, Swiss Federal Research Institute WSL, 8903, Birmensdorf, Switzerland
- Forest Soils and Biogeochemistry, Swiss Federal Research Institute WSL, 8903, Birmensdorf, Switzerland
| | - Roland A Werner
- Institute of Agricultural Sciences, ETH Zurich, 8092, Zurich, Switzerland
| | - Bernd Kammerer
- Core Competence Metabolomics, Albert-Ludwigs-University Freiburg, 79104, Freiburg, Germany
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Sakae K, Kawai S, Kitagami Y, Matsuo N, Selosse MA, Tanikawa T, Matsuda Y. Effects of fungicide treatments on mycorrhizal communities and carbon acquisition in the mixotrophic Pyrola japonica (Ericaceae). MYCORRHIZA 2024; 34:293-302. [PMID: 38922410 DOI: 10.1007/s00572-024-01157-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Accepted: 06/11/2024] [Indexed: 06/27/2024]
Abstract
Pyrola japonica, a member of the family Ericaceae, is a mixotroph that grows on forest floors and obtains carbon (C) from both its photosynthesis and its mycorrhizal fungi. Its mycorrhizal community is dominated by Russulaceae. However, the mechanism of its C acquisition and its flexibility are not well understood. Our aim was to assess the impact of disturbance of the mycorrhizal fungal communities on C acquisition by P. japonica. We repeatedly applied a fungicide (Benomyl) to soils around P. japonica plants in a broad-leaved forest of central Japan, in order to disturb fungal associates near roots. After fungicide treatment, P. japonica roots were collected and subjected to barcoding by next-generation sequencing, focusing on the ITS2 region. The rate of mycorrhizal formation and α-diversity did not significantly change upon fungicide treatments. Irrespective of the treatments, Russulaceae represented more than 80% of the taxa. Leaves and seeds of the plants were analysed for 13C stable isotope ratios that reflect fungal C gain. Leaf and seed δ13C values with the fungicide treatment were significantly lower than those with the other treatments. Thus the fungicide did not affect mycorrhizal communities in the roots, but disturbed mycorrhizal fungal pathways via extraradical hyphae, and resulted in a more photosynthetic behaviour of P. japonica for leaves and seeds.
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Affiliation(s)
- Kohtaro Sakae
- Graduate School of Bioresources, Mie University, 1577 Kurimamachiya, Tsu, Mie, 514-8507, Japan
| | - Shosei Kawai
- Graduate School of Bioresources, Mie University, 1577 Kurimamachiya, Tsu, Mie, 514-8507, Japan
| | - Yudai Kitagami
- Graduate School of Bioresources, Mie University, 1577 Kurimamachiya, Tsu, Mie, 514-8507, Japan
| | - Naoko Matsuo
- Graduate School of Bioresources, Mie University, 1577 Kurimamachiya, Tsu, Mie, 514-8507, Japan
| | - Marc-André Selosse
- Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, UA, 57 Rue Cuvier, 75005, Paris, France
- Faculty of Biology, University of Gdańsk, Ul. Wita Stwosza 59, 80-308, Gdańsk, Poland
- Institut Universitaire de France, Paris, France
| | - Toko Tanikawa
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
| | - Yosuke Matsuda
- Graduate School of Bioresources, Mie University, 1577 Kurimamachiya, Tsu, Mie, 514-8507, Japan.
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Yu YZ, Liu HT, Yang F, Li L, Schäufele R, Tcherkez G, Schnyder H, Gong XY. δ13C of bulk organic matter and cellulose reveal post-photosynthetic fractionation during ontogeny in C4 grass leaves. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:1451-1464. [PMID: 37943576 DOI: 10.1093/jxb/erad445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Accepted: 11/04/2023] [Indexed: 11/10/2023]
Abstract
The 13C isotope composition (δ13C) of leaf dry matter is a useful tool for physiological and ecological studies. However, how post-photosynthetic fractionation associated with respiration and carbon export influences δ13C remains uncertain. We investigated the effects of post-photosynthetic fractionation on δ13C of mature leaves of Cleistogenes squarrosa, a perennial C4 grass, in controlled experiments with different levels of vapour pressure deficit and nitrogen supply. With increasing leaf age class, the 12C/13C fractionation of leaf organic matter relative to the δ13C of atmosphere CO2 (ΔDM) increased while that of cellulose (Δcel) was almost constant. The divergence between ΔDM and Δcel increased with leaf age class, with a maximum value of 1.6‰, indicating the accumulation of post-photosynthetic fractionation. Applying a new mass balance model that accounts for respiration and export of photosynthates, we found an apparent 12C/13C fractionation associated with carbon export of -0.5‰ to -1.0‰. Different ΔDM among leaves, pseudostems, daughter tillers, and roots indicate that post-photosynthetic fractionation happens at the whole-plant level. Compared with ΔDM of old leaves, ΔDM of young leaves and Δcel are more reliable proxies for predicting physiological parameters due to the lower sensitivity to post-photosynthetic fractionation and the similar sensitivity in responses to environmental changes.
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Affiliation(s)
- Yong Zhi Yu
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
| | - Hai Tao Liu
- Lehrstuhl für Grünlandlehre, Technische Universität München, Alte Akademie 12, D-85354 Freising, Germany
- College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, China
| | - Fang Yang
- Lehrstuhl für Grünlandlehre, Technische Universität München, Alte Akademie 12, D-85354 Freising, Germany
- College of Resources and Environment, Jilin Agricultural University, Changchun 130117, China
| | - Lei Li
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
| | - Rudi Schäufele
- Lehrstuhl für Grünlandlehre, Technische Universität München, Alte Akademie 12, D-85354 Freising, Germany
| | - Guillaume Tcherkez
- Research School of Biology, ANU Joint College of Science, Australian National University, Canberra ACT 0200, Australia
- Institut de Recherche en Horticulture et Semences, INRAe, Université d'Angers, 42 rue Georges Morel, 49070 Beaucouzé, France
| | - Hans Schnyder
- Lehrstuhl für Grünlandlehre, Technische Universität München, Alte Akademie 12, D-85354 Freising, Germany
| | - Xiao Ying Gong
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
- Lehrstuhl für Grünlandlehre, Technische Universität München, Alte Akademie 12, D-85354 Freising, Germany
- Fujian Provincial Key Laboratory for Plant Eco-physiology, Fuzhou, China
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Gessler A. Why leaves become isotopically lighter than photosynthetic carbon isotope discrimination explains: on the importance of post-photosynthetic fractionation. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:1210-1212. [PMID: 38416205 PMCID: PMC10901200 DOI: 10.1093/jxb/erad497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/29/2024]
Abstract
This article comments on:
Yu YZ, Liu HT, Yang F, Li L, Schäufele R, Tcherkez G, Schnyder H, Gong XY. 2024. δ13C of bulk organic matter and cellulose reveal post-photosynthetic fractionation during ontogeny in C4 grass leaves. Journal of Experimental Botany 75, 1451–1464
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Affiliation(s)
- Arthur Gessler
- Forest Dynamics, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland
- Institute of Terrestrial Ecosystems, ETH Zurich, Zurich, Switzerland
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Ubierna N, Holloway-Phillips MM, Wingate L, Ogée J, Busch FA, Farquhar GD. Using Carbon Stable Isotopes to Study C 3 and C 4 Photosynthesis: Models and Calculations. Methods Mol Biol 2024; 2790:163-211. [PMID: 38649572 DOI: 10.1007/978-1-0716-3790-6_10] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
Stable carbon isotopes are a powerful tool to study photosynthesis. Initial applications consisted of determining isotope ratios of plant biomass using mass spectrometry. Subsequently, theoretical models relating C isotope values to gas exchange characteristics were introduced and tested against instantaneous online measurements of 13C photosynthetic discrimination. Beginning in the twenty-first century, laser absorption spectroscopes with sufficient precision for determining isotope mixing ratios became commercially available. This has allowed collection of large data sets at lower cost and with unprecedented temporal resolution. More data and accompanying knowledge have permitted refinement of 13C discrimination model equations, but often at the expense of increased model complexity and difficult parametrization. This chapter describes instantaneous online measurements of 13C photosynthetic discrimination, provides recommendations for experimental setup, and presents a thorough compilation of equations available to researchers. We update our previous 2018 version of this chapter by including recently improved descriptions of (photo)respiratory processes and associated fractionations. We discuss the capabilities and limitations of the diverse 13C discrimination model equations and provide guidance for selecting the model complexity needed for different applications.
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Affiliation(s)
- Nerea Ubierna
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (INRAE), Unité Mixte de Recherche (UMR)1391 ISPA, Villenave D'Ornon, France
| | - Meisha-Marika Holloway-Phillips
- Research Unit of Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmendsorf, Switzerland
| | - Lisa Wingate
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (INRAE), Unité Mixte de Recherche (UMR)1391 ISPA, Villenave D'Ornon, France
| | - Jérôme Ogée
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (INRAE), Unité Mixte de Recherche (UMR)1391 ISPA, Villenave D'Ornon, France
| | - Florian A Busch
- School of Biosciences and The Birmingham Institute of Forest Research, University of Birmingham, Birmingham, UK
| | - Graham D Farquhar
- Research School of Biology, Australian National University, Canberra, ACT, Australia
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Biasuz EC, Kalcsits L. Rootstock effects on leaf function and isotope composition in apple occurred on both scion grafted and ungrafted rootstocks under hydroponic conditions. FRONTIERS IN PLANT SCIENCE 2023; 14:1274195. [PMID: 38155849 PMCID: PMC10753837 DOI: 10.3389/fpls.2023.1274195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Accepted: 11/27/2023] [Indexed: 12/30/2023]
Abstract
Rootstocks are used in modern apple production to increase productivity, abiotic and biotic stress tolerance, and fruit quality. While dwarfing for apple rootstocks has been well characterized, the physiological mechanisms controlling dwarfing have not. Previous research has reported rootstock effects on scion water relations. Root architecture and variability in soil moisture across rooting depths can also contribute to these differences among rootstocks in the field. To exclude these effects on rootstock behavior, scions were grafted onto four different rootstocks with varying effects on scion vigor (B.9, M.9, G.41 and G.890). Non-grafted rootstocks were also grown to examine whether the effects of rootstock occurred independently from scion grafting. Plants were grown in a greenhouse under near steady-state hydroponic conditions. Carbon (δ13C), oxygen (δ18O) and nitrogen (δ15N) isotope composition were evaluated and relationships with carbon assimilation, water relations, and shoot growth were tested. Rootstocks affected scion shoot growth, aligning with known levels of vigor for these four rootstocks, and were consistent between the two scion cultivars. Furthermore, changes in water relations influenced by rootstock genotype significantly affected leaf, stem, and root δ13C, δ18O, and δ15N. Lower δ13C and δ18O were inconsistently associated with rootstock genotypes with higher vigor in leaves, stems, and roots. G.41 had lower δ15N in roots, stems, and leaves in both grafted and ungrafted trees. The effects of rootstock on aboveground water relations were also similar for leaves of ungrafted rootstocks. This study provides further evidence that dwarfing for apple rootstocks is linked with physiological limitations to water delivery to the developing scion.
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Affiliation(s)
- Erica Casagrande Biasuz
- Tree Fruit Research and Extension Center, Washington State University, Wenatchee, WA, United States
- Department of Horticulture, Washington State University, Pullman, WA, United States
| | - Lee Kalcsits
- Tree Fruit Research and Extension Center, Washington State University, Wenatchee, WA, United States
- Department of Horticulture, Washington State University, Pullman, WA, United States
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Miszalski Z, Kaszycki P, Śliwa-Cebula M, Kaczmarczyk A, Gieniec M, Supel P, Kornaś A. Plasticity of Plantago lanceolata L. in Adaptation to Extreme Environmental Conditions. Int J Mol Sci 2023; 24:13605. [PMID: 37686411 PMCID: PMC10487448 DOI: 10.3390/ijms241713605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 08/17/2023] [Accepted: 08/31/2023] [Indexed: 09/10/2023] Open
Abstract
This study aimed at characterizing some adaptive changes in Plantago lanceolata L. exposed to harsh conditions of a desert-like environment generating physiological stress of limited water availability and exposure to strong light. It was clearly shown that the plants were capable of adapting their root system and vascular tissues to enable efficient vegetative performance. Soil analyses, as well as nitrogen isotope discrimination data show that P. lanceolata leaves in a desert-like environment had better access to nitrogen (nitrite/nitrate) and were able to fix it efficiently, as compared to the plants growing in the surrounding forest. The arbuscular mycorrhiza was also shown to be well-developed, and this was accompanied by higher bacterial frequency in the root zone, which might further stimulate plant growth. A closer look at the nitrogen content and leaf veins with a higher number of vessels and a greater vessel diameter made it possible to define the changes developed by the plants populating sandy habitats as compared with the vegetation sites located in the nearby forest. A determination of the photosynthesis parameters indicates that the photochemical apparatus in P. lanceolata inhabiting the desert areas adapted slightly to the desert-like environment and the time of day, with some changes of the reaction center (RC) size (photosystem II, PSII), while the plants' photochemical activity was at a similar level. No differences between the two groups of plants were observed in the dissipation of light energy. The exposure of plants to harsh conditions of a desert-like environment increased the water use efficiency (WUE) value in parallel with possible stimulation of the β-carboxylation pathway.
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Affiliation(s)
- Zbigniew Miszalski
- The W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Kraków, Poland; (Z.M.); (A.K.); (M.G.)
| | - Paweł Kaszycki
- Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Al. Mickiewicza 21, 31-120 Kraków, Poland; (P.K.); (M.Ś.-C.); (P.S.)
| | - Marta Śliwa-Cebula
- Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Al. Mickiewicza 21, 31-120 Kraków, Poland; (P.K.); (M.Ś.-C.); (P.S.)
| | - Adriana Kaczmarczyk
- The W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Kraków, Poland; (Z.M.); (A.K.); (M.G.)
| | - Miron Gieniec
- The W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Kraków, Poland; (Z.M.); (A.K.); (M.G.)
| | - Paulina Supel
- Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Al. Mickiewicza 21, 31-120 Kraków, Poland; (P.K.); (M.Ś.-C.); (P.S.)
| | - Andrzej Kornaś
- Institute of Biology and Earth Sciences, Pedagogical University of Krakow, Podchorążych 2, 30-084 Kraków, Poland
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Wang S, Epron D, Kobayashi K, Takanashi S, Dannoura M. Sources of carbon supporting the fast growth of developing immature moso bamboo ( Phyllostachys edulis) culms: inference from carbon isotopes and anatomy. AOB PLANTS 2023; 15:plad046. [PMID: 37497441 PMCID: PMC10368343 DOI: 10.1093/aobpla/plad046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 06/29/2023] [Indexed: 07/28/2023]
Abstract
Phyllostachys edulis is a spectacularly fast-growing species that completes its height growth within 2 months after the shoot emerges without producing leaves (fast-growing period, FGP). This phase was considered heterotrophic, with the carbon necessary for the growth being transferred from the mature culms via the rhizomes, although previous studies observed key enzymes and anatomical features related to C4-carbon fixation in developing culms. We tested whether C4-photosynthesis or dark-CO2 fixation through anaplerotic reactions significantly contributes to the FGP, resulting in differences in the natural abundance of δ13C in bulk organic matter and organic compounds. Further, pulse-13CO2-labelling was performed on developing culms, either from the surface or from the internal hollow, to ascertain whether significant CO2 fixation occurs in developing culms. δ13C of young shoots and developing culms were higher (-26.3 to -26.9 ‰) compared to all organs of mature bamboos (-28.4 to -30.1 ‰). Developing culms contained chlorophylls, most observed in the skin tissues. After pulse-13CO2-labelling, the polar fraction extracted from the skin tissues was slightly enriched in 13C, and only a weak 13C enrichment was observed in inner tissues. Main carbon source sustaining the FGP was not assimilated by the developing culm, while a limited anaplerotic fixation of respired CO2 cannot be excluded and is more likely than C4-photosynthetic carbon fixation.
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Affiliation(s)
| | - Daniel Epron
- Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Keito Kobayashi
- Kansai Research Centre, Forestry and Forest Products Research Institute, 68 Momoyamacho Nagaikyutaro, Fushimi-ku, Kyoto 612-0855, Japan
| | - Satoru Takanashi
- Kansai Research Centre, Forestry and Forest Products Research Institute, 68 Momoyamacho Nagaikyutaro, Fushimi-ku, Kyoto 612-0855, Japan
| | - Masako Dannoura
- Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
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Trophic Structure of the Soil-Dwelling Arthropod Communities at the Border of the Forest and the Steppe in the South of Western Siberia: Isotopic Data. DIVERSITY 2023. [DOI: 10.3390/d15030445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/22/2023]
Abstract
Epigeic generalist predators play a crucial role in terrestrial ecosystems, connecting aboveground and belowground food webs. Using stable isotope compositions (δ13C and δ15N values), we assessed the trophic niches of the two main groups of generalist predators (ground beetles (Coleoptera, Carabidae) and spiders (Arachnida: Aranei)), as well as their potential prey (phytophagous and saprophagous insects), plants, and soils in the forest, steppe, and transitional ecosystems located in the forest–steppe of southwestern Siberia. We hypothesized that (1) the trophic niche of carabids is wider than that of spiders, because some ground beetles are omnivorous, and (2) the contribution of invertebrates from the detrital food web (saprophages) to the diet of generalist predators is higher in the “detrital” forest ecosystem than in the steppe, which should be reflected in increased δ13C and δ15N values of the predators in the forest. In total, 16 species of carabid and 17 species of spider were analyzed. The δ15N values of ground beetles suggested a wide range of trophic niches corresponding to two or three trophic levels. Omnivorous carabids of the genera Amara and Harpalus had the minimum δ15N values. The carbon isotope compositions of the ground beetles suggests that most predatory species were predominantly involved in grazing food chains. Spiders had on average increased δ15N values compared to ground beetles, and a relatively narrow range of δ15N values. The isotopic niche occupied by spiders hardly overlapped with the isotopic niche of carabids, which may indicate a significant difference in the range of consumed resources. Thus, our data suggest a significant difference in the trophic niches of the key generalist predators, ground beetles and spiders, which was observed both in the forest and the steppe habitats. Spiders appear to be more closely associated with detrital food webs than ground beetles. Contrary to our expectations, we did not find higher δ13C and δ15N values in ground-dwelling generalist predators in the forest compared to the steppe ecosystem.
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Trevisan F, Tiziani R, Hall RD, Cesco S, Mimmo T. δ 13C as a tool for iron and phosphorus deficiency prediction in crops. PLANT DIRECT 2023; 7:e487. [PMID: 36950260 PMCID: PMC10027435 DOI: 10.1002/pld3.487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Revised: 01/27/2023] [Accepted: 02/20/2023] [Indexed: 06/18/2023]
Abstract
Many studies proposed the use of stable carbon isotope ratio (δ13C) as a predictor of abiotic stresses in plants, considering only drought and nitrogen deficiency without further investigating the impact of other nutrient deficiencies, that is, phosphorus (P) and/or iron (Fe) deficiencies. To fill this knowledge gap, we assessed the δ13C of barley (Hordeum vulgare L.), cucumber (Cucumis sativus L.), maize (Zea mays L.), and tomato (Solanum lycopersicon L.) plants suffering from P, Fe, and combined P/Fe deficiencies during a two-week period using an isotope-ratio mass spectrometer. Simultaneously, plant physiological status was monitored with an infra-red gas analyzer. Results show clear contrasting time-, treatment-, species-, and tissue-specific variations. Furthermore, physiological parameters showed limited correlation with δ13C shifts, highlighting that the plants' δ13C, does not depend solely on photosynthetic carbon isotope fractionation/discrimination (Δ). Hence, the use of δ13C as a predictor is highly discouraged due to its inability to detect and discern different nutrient stresses, especially when combined stresses are present.
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Affiliation(s)
- Fabio Trevisan
- Faculty of Science and TechnologyFree University of BolzanoBolzanoItaly
| | - Raphael Tiziani
- Faculty of Science and TechnologyFree University of BolzanoBolzanoItaly
| | - Robert D. Hall
- Laboratory of Plant PhysiologyWageningen University & ResearchWageningenThe Netherlands
- Business Unit BioscienceWageningen University & ResearchWageningenThe Netherlands
| | - Stefano Cesco
- Faculty of Science and TechnologyFree University of BolzanoBolzanoItaly
| | - Tanja Mimmo
- Faculty of Science and TechnologyFree University of BolzanoBolzanoItaly
- Competence Centre of Plant HealthFree University of Bozen‐BolzanoBolzanoItaly
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Ma WT, Yu YZ, Wang X, Gong XY. Estimation of intrinsic water-use efficiency from δ 13C signature of C 3 leaves: Assumptions and uncertainty. FRONTIERS IN PLANT SCIENCE 2023; 13:1037972. [PMID: 36714771 PMCID: PMC9877432 DOI: 10.3389/fpls.2022.1037972] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 12/19/2022] [Indexed: 06/18/2023]
Abstract
Carbon isotope composition (δ13C) has been widely used to estimate the intrinsic water-use efficiency (iWUE) of plants in ecosystems around the world, providing an ultimate record of the functional response of plants to climate change. This approach relies on established relationships between leaf gas exchange and isotopic discrimination, which are reflected in different formulations of 13C-based iWUE models. In the current literature, most studies have utilized the simple, linear equation of photosynthetic discrimination to estimate iWUE. However, recent studies demonstrated that using this linear model for quantitative studies of iWUE could be problematic. Despite these advances, there is a scarcity of review papers that have comprehensively reviewed the theoretical basis, assumptions, and uncertainty of 13C-based iWUE models. Here, we 1) present the theoretical basis of 13C-based iWUE models: the classical model (iWUEsim), the comprehensive model (iWUEcom), and the model incorporating mesophyll conductance (iWUEmes); 2) discuss the limitations of the widely used iWUEsim model; 3) and make suggestions on the application of the iWUEmes model. Finally, we suggest that a mechanistic understanding of mesophyll conductance associated effects and post-photosynthetic fractionation are the bottlenecks for improving the 13C-based estimation of iWUE.
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Affiliation(s)
- Wei Ting Ma
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
| | - Yong Zhi Yu
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
| | - Xuming Wang
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, Fujian Normal University, Fuzhou, China
| | - Xiao Ying Gong
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, Fujian Normal University, Fuzhou, China
- Fujian Provincial Key Laboratory for Plant Eco-physiology, Fuzhou, China
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Oelze VM, O'Neal I, Wittig RM, Kupczik K, Schulz-Kornas E, Hohmann G. A skew in poo: Biases in primate fecal isotope analysis and recommendations for standardized sample preparation. Am J Primatol 2023; 85:e23436. [PMID: 36239010 DOI: 10.1002/ajp.23436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Revised: 08/29/2022] [Accepted: 09/05/2022] [Indexed: 01/05/2023]
Abstract
Feces are a treasure trove in the study of animal behavior and ecology. Stable carbon and nitrogen isotope analysis allows to assess the dietary niches of elusive primate species and primate breastfeeding behavior. However, some fecal isotope data may unwillingly be biased toward the isotope ratios of undigested plant matter, requiring more consistent sample preparation protocols. We assess the impact of this potential data skew in 114 fecal samples of wild bonobos (Pan paniscus) by measuring the isotope differences (Δ13 C, Δ15 N) between bulk fecal samples containing larger particles (>1 mm) and filtered samples containing only small particles (<1 mm). We assess the influence of fecal carbon and nitrogen content (ΔC:N) and sample donor age (subadult, adult) on the resulting Δ13 C, Δ15 N values (n = 228). Additionally, we measure the isotope ratios in three systematically sieved fecal samples of chimpanzees (Pan troglodytes verus), with particle sizes ranging from 20 μm to 8 mm (n = 30). We found differences in fecal carbon and nitrogen content, with the smaller fecal fraction containing more nitrogen on average. While the Δ13 C values were small and not affected by age or ΔC:N, the Δ15 N values were significantly influenced by fecal ΔC:N, possibly resulting from the differing proportions of undigested plant macroparticles. Significant relationships between carbon stable isotope ratios (δ13 C) values and %C in large fecal fractions of both age groups corroborated this assessment. Δ15 N values were significantly larger in adults than subadults, which should be of concern in isotope studies comparing adult females with infants to assess breastfeeding. We found a random variation of up to 3.0‰ in δ13 C and 2.0‰ in nitrogen stable isotope ratios within the chimpanzee fecal samples separated by particle sizes. We show that particle size influences isotope ratios and propose a simple, cost-effective filtration method for primate feces to exclude larger undigested food particles from the analysis, which can easily be adopted by labs worldwide.
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Affiliation(s)
- Vicky M Oelze
- Anthropology Department, University of California, Santa Cruz, Santa Cruz, California, USA
| | - Isabella O'Neal
- Anthropology Department, University of California, Santa Cruz, Santa Cruz, California, USA
| | - Roman M Wittig
- Department of Human Behavior, Max Planck Institute for Evolutionary Anthropology, Ecology and Culture, Leipzig, Germany.,Institute for Cognitive Sciences, CNRS UMR5229 University Claude Bernard Lyon 1, Bron, France
| | - Kornelius Kupczik
- Department of Anthropology, Faculty of Social Sciences, University of Chile, Ñuñoa, Santiago de Chile, Chile.,Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Ellen Schulz-Kornas
- Department of Cariology, Endodontology and Periodontology, University of Leipzig, Leipzig, Germany
| | - Gottfried Hohmann
- Department of Human Behavior, Max Planck Institute for Evolutionary Anthropology, Ecology and Culture, Leipzig, Germany.,Max-Planck-Institute of Animal Behavior, Konstanz, Germany
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Palmer L, Robertson I, Lavergne A, Hemming D, Loader NJ, Young G, Davies D, Rinne‐Garmston K, Los S, Williams J. Spatio-Temporal Variations in Carbon Isotope Discrimination Predicted by the JULES Land Surface Model. JOURNAL OF GEOPHYSICAL RESEARCH. BIOGEOSCIENCES 2022; 127:e2022JG007041. [PMID: 37034424 PMCID: PMC10078459 DOI: 10.1029/2022jg007041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Revised: 11/23/2022] [Accepted: 11/28/2022] [Indexed: 06/19/2023]
Abstract
Stable carbon isotopes in plants can help evaluate and improve the representation of carbon and water cycles in land-surface models, increasing confidence in projections of vegetation response to climate change. Here, we evaluated the predictive skills of the Joint UK Land Environmental Simulator (JULES) to capture spatio-temporal variations in carbon isotope discrimination (Δ13C) reconstructed by tree rings at 12 sites in the United Kingdom over the period 1979-2016. Modeled and measured Δ13C time series were compared at each site and their relationships with local climate investigated. Modeled Δ13C time series were significantly correlated (p < 0.05) with tree-ring Δ13C at eight sites, but JULES underestimated mean Δ13C values at all sites, by up to 2.6‰. Differences in mean Δ13C may result from post-photosynthetic isotopic fractionations that were not considered in JULES. Inter-annual variability in Δ13C was also underestimated by JULES at all sites. While modeled Δ13C typically increased over time across the UK, tree-ring Δ13C values increased only at five sites located in the northern regions but decreased at the southern-most sites. Considering all sites together, JULES captured the overall influence of environmental drivers on Δ13C but failed to capture the direction of change in Δ13C caused by air temperature, atmospheric CO2 and vapor pressure deficit at some sites. Results indicate that the representation of carbon-water coupling in JULES could be improved to reproduce both the trend and magnitude of interannual variability in isotopic records, the influence of local climate on Δ13C, and to reduce uncertainties in predicting vegetation-environment interactions.
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Affiliation(s)
- Lewis Palmer
- Department of GeographySwansea UniversitySwanseaUK
- Modelling and InformaticsSoils, Crops, and WaterRSK ADAS LimitedBristolUK
| | | | - Aliénor Lavergne
- Department of Geography and Environmental ScienceUniversity of ReadingReadingUK
- Department of PhysicsImperial College LondonLondonUK
| | | | | | - Giles Young
- Natural Resources Institute Finland (Luke)HelsinkiFinland
| | | | | | - Sietse Los
- Department of GeographySwansea UniversitySwanseaUK
- Wetland Conservation UnitWildfowl and Wetland Trust (WWT)GloucestershireUK
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Ubierna N, Holloway‐Phillips M, Farquhar GD. Scaling from fluxes to organic matter: interpreting 13 C isotope ratios of plant material using flux models. THE NEW PHYTOLOGIST 2022; 236:2003-2008. [PMID: 36385264 PMCID: PMC9827853 DOI: 10.1111/nph.18523] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
This article is a Commentary on Leppä et al. (2022), 236: 2044–2060.
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Affiliation(s)
- Nerea Ubierna
- Research School of BiologyThe Australian National UniversityCanberraACT2601Australia
| | | | - Graham D. Farquhar
- Research School of BiologyThe Australian National UniversityCanberraACT2601Australia
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Late Pleistocene megafauna extinction leads to missing pieces of ecological space in a North American mammal community. Proc Natl Acad Sci U S A 2022; 119:e2115015119. [PMID: 36122233 PMCID: PMC9522422 DOI: 10.1073/pnas.2115015119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The conservation status of large-bodied mammals is dire. Their decline has serious consequences because they have unique ecological roles not replicated by smaller-bodied animals. Here, we use the fossil record of the megafauna extinction at the terminal Pleistocene to explore the consequences of past biodiversity loss. We characterize the isotopic and body-size niche of a mammal community in Texas before and after the event to assess the influence on the ecology and ecological interactions of surviving species (>1 kg). Preextinction, a variety of C4 grazers, C3 browsers, and mixed feeders existed, similar to modern African savannas, with likely specialization among the two sabertooth species for juvenile grazers. Postextinction, body size and isotopic niche space were lost, and the δ13C and δ15N values of some survivors shifted. We see mesocarnivore release within the Felidae: the jaguar, now an apex carnivore, moved into the specialized isotopic niche previously occupied by extinct cats. Puma, previously absent, became common and lynx shifted toward consuming more C4-based resources. Lagomorphs were the only herbivores to shift toward C4 resources. Body size changes from the Pleistocene to Holocene were species-specific, with some animals (deer, hare) becoming significantly larger and others smaller (bison, rabbits) or exhibiting no change to climate shifts or biodiversity loss. Overall, the Holocene body-size-isotopic niche was drastically reduced and considerable ecological complexity lost. We conclude biodiversity loss led to reorganization of survivors and many "missing pieces" within our community; without intervention, the loss of Earth's remaining ecosystems that support megafauna will likely suffer the same fate.
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16
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Muktadir MA, Merchant A, Sadeque A, Tanveer M, Adhikari KN, Huang L. Carbon isotope and soluble metabolites reflect physiological status among contrasting faba bean genotypes in response to water deficit. FRONTIERS IN PLANT SCIENCE 2022; 13:955406. [PMID: 36186012 PMCID: PMC9523585 DOI: 10.3389/fpls.2022.955406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Accepted: 07/27/2022] [Indexed: 06/16/2023]
Abstract
Identification and validation of biomarkers and bioindicators to select genotypes with superior tolerance to water deficit (WD) under field conditions are paramount to plant breeding programs. However, the co-occurrence of different abiotic stresses such as WD, heat, and radiation makes it difficult to develop generalized protocols to monitor the physiological health of the plant system. The study assessed the most abundant carbohydrates and sugar alcohols in five faba bean (Vicia faba) genotypes under field conditions and the abundance of naturally occurring carbon isotopes in bulk leaf material to predict water use efficiency (WUE). Plant water status and biomass accumulation were also assessed. Among the accumulated sugars, inter-specific variation in glucose was most prevalent and was found at a higher concentration (8.52 mg g-1 leaf) in rainfed trial. myo-Inositol concentrations followed that of glucose accumulation in that the rainfed trial had higher amounts compared to the irrigated trial. WUE calculated from carbon isotope abundance was consistently offset with measured WUE from measurements of leaf gas exchange. All genotypes demonstrated significant relationships between predicted and measured WUE (p < 0.05) apart from control variety PBA Warda. Thus, bulk leaf-level carbon isotope abundance can be used to calculate WUE and used as an effective selection criterion for improving WUE in faba bean breeding programs under field conditions.
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Affiliation(s)
- Md Abdul Muktadir
- Faculty of Science, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, Australia
- International Research Center for Environmental Membrane Biology, College of Food Science and Engineering, Foshan University, Foshan, China
- Faculty of Science, Plant Breeding Institute, The University of Sydney, Sydney, NSW, Australia
- Pulses Research Centre, Bangladesh Agricultural Research Institute, Gazipur, Bangladesh
| | - Andrew Merchant
- Faculty of Science, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, Australia
| | - Abdus Sadeque
- Faculty of Science, Plant Breeding Institute, The University of Sydney, Sydney, NSW, Australia
| | - Mohsin Tanveer
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS, Australia
| | - Kedar Nath Adhikari
- Faculty of Science, Plant Breeding Institute, The University of Sydney, Sydney, NSW, Australia
| | - Liping Huang
- International Research Center for Environmental Membrane Biology, College of Food Science and Engineering, Foshan University, Foshan, China
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17
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Casagrande Biasuz E, Kalcsits LA. Apple rootstocks affect functional leaf traits with consequential effects on carbon isotope composition and vegetative vigour. AOB PLANTS 2022; 14:plac020. [PMID: 35937547 PMCID: PMC9346634 DOI: 10.1093/aobpla/plac020] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Accepted: 05/04/2022] [Indexed: 05/27/2023]
Abstract
Composite trees combine optimal traits from both the rootstock and the scion. Dwarfing rootstocks are commonly used to reduce shoot vigour and improve fruit quality and productivity. Although growth habits of different rootstocks have been clearly described, the underlying physiological traits affecting scion vigour are not well understood. Plant water status and stem water potential are strongly influenced by water supply and demand through the soil-plant-atmosphere continuum. In the scion, stomata regulate water loss and are essential to prevent hydraulic failure. Stomatal conductance influences leaf carbon isotope composition. Combined, the effects of reduced stomatal conductance and, consequently, carbon fixation may affect tree growth. These differences could also correspond to differences in scion vigour controlled by rootstock genotype. Here, vegetative growth, gas exchange, stem water potential and leaf δ13C were compared to determine how rootstocks affect scion water relations and whether these differences correspond to shoot vigour. There was a range in vigour among rootstocks by almost 2-fold. Net leaf carbon assimilation rates were lower in rootstocks with lower vigour. Rootstock vigour was closely associated with leaf gas exchange and stem water potential in the scion and was reflected in leaf δ13C signatures. Dwarfing was strongly affected by changes to plant water status induced by rootstock genotype and these changes are distinguishable when measuring leaf and stem δ13C composition. These observations indicate that scion water relations and leaf carbon isotope discrimination were affected by rootstock genotype. These results have implications for better understanding dwarfing mechanisms in apple rootstocks and the relationship with water-use traits.
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Affiliation(s)
- Erica Casagrande Biasuz
- Department of Horticulture, Washington State University, 1100 North Western Avenue, Wenatchee, WA 98801, USA
- WSU Tree Fruit Research and Extension Center, 1100 North Western Avenue, Wenatchee, WA 98801, USA
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18
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Domergue J, Abadie C, Lalande J, Deswarte J, Ober E, Laurent V, Zimmerli C, Lerebour P, Duchalais L, Bédard C, Derory J, Moittie T, Lamothe‐Sibold M, Beauchêne K, Limami AM, Tcherkez G. Grain carbon isotope composition is a marker for allocation and harvest index in wheat. PLANT, CELL & ENVIRONMENT 2022; 45:2145-2157. [PMID: 35475551 PMCID: PMC9323493 DOI: 10.1111/pce.14339] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/06/2021] [Revised: 02/28/2022] [Accepted: 04/06/2022] [Indexed: 06/14/2023]
Abstract
The natural 13 C abundance (δ13 C) in plant leaves has been used for decades with great success in agronomy to monitor water-use efficiency and select modern cultivars adapted to dry conditions. However, in wheat, it is also important to find genotypes with high carbon allocation to spikes and grains, and thus with a high harvest index (HI) and/or low carbon losses via respiration. Finding isotope-based markers of carbon partitioning to grains would be extremely useful since isotope analyses are inexpensive and can be performed routinely at high throughput. Here, we took the advantage of a set of field trials made of more than 600 plots with several wheat cultivars and measured agronomic parameters as well as δ13 C values in leaves and grains. We find a linear relationship between the apparent isotope discrimination between leaves and grain (denoted as Δδcorr ), and the respiration use efficiency-to-HI ratio. It means that overall, efficient carbon allocation to grains is associated with a small isotopic difference between leaves and grains. This effect is explained by postphotosynthetic isotope fractionations, and we show that this can be modelled by equations describing the carbon isotope composition in grains along the wheat growth cycle. Our results show that 13 C natural abundance in grains could be useful to find genotypes with better carbon allocation properties and assist current wheat breeding technologies.
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Affiliation(s)
- Jean‐Baptiste Domergue
- Institut de Recherche en Horticulture et SemencesUniversité d'Angers, INRAeBeaucouzéFrance
| | - Cyril Abadie
- Institut de Recherche en Horticulture et SemencesUniversité d'Angers, INRAeBeaucouzéFrance
| | - Julie Lalande
- Institut de Recherche en Horticulture et SemencesUniversité d'Angers, INRAeBeaucouzéFrance
| | - Jean‐Charles Deswarte
- Arvalis Institut du Végétal, Pôle valorisation de l'écophysiologie, ZA des GraviersVilliers le BâcleFrance
| | - Eric Ober
- National Institute of Agricultural BotanyCambridgeUK
| | | | | | | | | | | | | | | | - Marlène Lamothe‐Sibold
- Plateforme Metabolisme MetabolomeSPOmics plant métabolisme métabolome platform, Institute of Plant Sciences Paris‐Saclay IPS2, CNRS, INRAe, University Paris‐SaclayOrsayFrance
| | - Katia Beauchêne
- Arvalis Institut du Végétal, Pôle PhenoHD3Beauce‐La‐RomaineFrance
| | - Anis M. Limami
- Institut de Recherche en Horticulture et SemencesUniversité d'Angers, INRAeBeaucouzéFrance
| | - Guillaume Tcherkez
- Institut de Recherche en Horticulture et SemencesUniversité d'Angers, INRAeBeaucouzéFrance
- Research School of Biology, ANU College of ScienceAustralian National UniversityCanberraAustralian Capital TerritoryAustralia
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Smith MR, Dinglasan E, Veneklaas E, Polania J, Rao IM, Beebe SE, Merchant A. Effect of Drought and Low P on Yield and Nutritional Content in Common Bean. FRONTIERS IN PLANT SCIENCE 2022; 13:814325. [PMID: 35422826 PMCID: PMC9002355 DOI: 10.3389/fpls.2022.814325] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/13/2021] [Accepted: 02/16/2022] [Indexed: 06/14/2023]
Abstract
Common bean (Phaseolus vulgaris L.) production in the tropics typically occurs in rainfed systems on marginal lands where yields are low, primarily as a consequence of drought and low phosphorus (P) availability in soil. This study aimed to investigate the physiological and chemical responses of 12 bush bean genotypes for adaptation to individual and combined stress factors of drought and low P availability. Water stress and P deficiency, both individually and combined, decreased seed weight and aboveground biomass by ∼80%. Water deficit and P deficiency decreased photosynthesis and stomatal conductance during plant development. Maximum rates of carboxylation, electron transport, and triose phosphate utilization were superior for two common bean genotypes (SEF60 and NCB226) that are better adapted to combined stress conditions of water deficit and low P compared to the commercial check (DOR390). In response to water deficit treatment, carbon isotope fractionation in the leaf tissue decreased at all developmental stages. Within the soluble leaf fraction, combined water deficit and low P, led to significant changes in the concentration of key nutrients and amino acids, whereas no impact was detected in the seed. Our results suggest that common bean genotypes have a degree of resilience in yield development, expressed in traits such as pod harvest index, and conservation of nutritional content in the seed. Further exploration of the chemical and physiological traits identified here will enhance the resilience of common bean production systems in the tropics.
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Affiliation(s)
- Millicent R. Smith
- School of Life and Environmental Sciences, Faculty of Science, The University of Sydney, Sydney, NSW, Australia
| | - Eric Dinglasan
- Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Saint Lucia, QLD, Australia
| | - Erik Veneklaas
- School of Biological Sciences and Institute of Agriculture, The University of Western Australia, Crawley, WA, Australia
| | - Jose Polania
- Centro Internacional de Agricultura Tropical (CIAT), Cali, Colombia
| | | | - Stephen E. Beebe
- Centro Internacional de Agricultura Tropical (CIAT), Cali, Colombia
| | - Andrew Merchant
- School of Life and Environmental Sciences, Faculty of Science, The University of Sydney, Sydney, NSW, Australia
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O'Sullivan R, Schmidt O, Monahan FJ. Stable isotope ratio analysis for the authentication of milk and dairy ingredients: A review. Int Dairy J 2022. [DOI: 10.1016/j.idairyj.2021.105268] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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21
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Soil Organic Carbon Isotope Tracing in Sorghum under Ambient CO2 and Free-Air CO2 Enrichment (FACE). LAND 2022. [DOI: 10.3390/land11020309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
As atmospheric carbon dioxide concentrations, [CO2Air], continue their uncontrolled rise, the capacity of soils to accumulate or retain carbon is uncertain. Free-air CO2 enrichment (FACE) experiments have been conducted to better understand the plant, soil and ecosystem response to elevated [CO2], frequently employing commercial CO2 that imparts a distinct isotopic signal to the system for tracing carbon. We conducted a FACE experiment in 1998 and 1999, whereby sorghum (C4 photosynthetic pathway) was grown in four replicates of four treatments using a split-strip plot design: (i) ambient CO2/ample water (365 μmol mol−1, “Control–Wet”), (ii) ambient CO2/water stress (“Control–Dry”), (iii) CO2-enriched (560 μmol mol−1, “FACE–Wet”), and (iv) CO2-enriched/water stressed (“FACE–Dry”). The stable-carbon isotope composition of the added CO2 (in FACE treatments) was close to that of free atmosphere background values, so the subsequent similar 13C-enriched carbon signal photosynthetically fixed by C4 sorghum plants could be used to trace the fate of carbon in both FACE and control treatments. Measurement of soil organic carbon content (SOC (%) = gC/gdry soil × 100%) and δ13C at three depths (0–15, 15–30, and 30–60 cm) were made on soils from the beginning and end of the two experimental growing seasons. A progressive ca. 0.5‰–1.0‰ δ13C increase in the upper soil SOC in all treatments over the course of the experiment indicated common entry of new sorghum carbon into the SOC pools. The 0–15 cm SOC in FACE treatments was 13C-enriched relative to the Control by ca. 1‰, and according to isotopic mass balance, the fraction of the new sorghum-derived SOC in the Control–Wet treatment at the end of the second season was 8.4%, 14.2% in FACE–Wet, 6.5% in Control–Dry, and 14.2% in FACE–Dry. The net SOC enhancement resulting from CO2 enrichment was therefore 5.8% (or 2.9% y−1 of experiment) under ample water and 7.7% (3.8% y−1 of experiment) under limited water, which matches the pattern of greater aboveground biomass increase with elevated [CO2Air] under the Dry treatment, but no parallel isotopic shifts were found in deeper soils. However, these increased fractions of new carbon in SOC at the end of the experiment do not necessarily mean an increase in total SOC content, because gravimetric measurements of SOC did not reveal a significant increase under elevated [CO2Air], at least within the limits of SOC-content error bars. Thus, new carbon gains might be offset by pre-experiment carbon losses. The results demonstrate successful isotopic tracing of carbon from plants to soils in this sorghum FACE experiment showing differences between FACE and Control treatments, which suggest more dynamic cycling of SOC under elevated [CO2Air] than in the Control treatment.
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Tarakanov IG, Tovstyko DA, Lomakin MP, Shmakov AS, Sleptsov NN, Shmarev AN, Litvinskiy VA, Ivlev AA. Effects of Light Spectral Quality on Photosynthetic Activity, Biomass Production, and Carbon Isotope Fractionation in Lettuce, Lactuca sativa L., Plants. PLANTS (BASEL, SWITZERLAND) 2022; 11:441. [PMID: 35161422 PMCID: PMC8840441 DOI: 10.3390/plants11030441] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Revised: 01/25/2022] [Accepted: 02/03/2022] [Indexed: 06/14/2023]
Abstract
The optimization of plant-specific LED lighting protocols for indoor plant growing systems needs both basic and applied research. Experiments with lettuce, Lactuca sativa L., plants using artificial lighting based on narrow-band LEDs were carried out in a controlled environment. We investigated plant responses to the exclusion of certain spectral ranges of light in the region of photosynthetically active radiation (PAR); in comparison, the responses to quasimonochromatic radiation in the red and blue regions were studied separately. The data on plant phenotyping, photosynthetic activity determination, and PAM fluorometry, indicating plant functional activity and stress responses to anomalous light environments, are presented. The study on carbon isotopic composition of photoassimilates in the diel cycle made it possible to characterize the balance of carboxylation and photorespiration processes in the leaves, using a previously developed oscillatory model of photosynthesis. Thus, the share of plant photorespiration (related to plant biomass enrichment with 13C) increased in response to red-light action, while blue light accelerated carboxylation (related to 12C enrichment). Blue light also reduced water use efficiency. These data are supported by the observations from the light environments missing distinct PAR spectrum regions. The fact that light of different wavelengths affects the isotopic composition of total carbon allowed us to elucidate the nature of its action on the organization of plant metabolism.
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Affiliation(s)
- Ivan G. Tarakanov
- Department of Plant Physiology, Russian State Agrarian University—Moscow Timiryazev Agricultural Academy, Timiryazevskaya Str., 49, 127550 Moscow, Russia; (D.A.T.); (M.P.L.); (A.S.S.); (N.N.S.); (A.A.I.)
| | - Daria A. Tovstyko
- Department of Plant Physiology, Russian State Agrarian University—Moscow Timiryazev Agricultural Academy, Timiryazevskaya Str., 49, 127550 Moscow, Russia; (D.A.T.); (M.P.L.); (A.S.S.); (N.N.S.); (A.A.I.)
| | - Maxim P. Lomakin
- Department of Plant Physiology, Russian State Agrarian University—Moscow Timiryazev Agricultural Academy, Timiryazevskaya Str., 49, 127550 Moscow, Russia; (D.A.T.); (M.P.L.); (A.S.S.); (N.N.S.); (A.A.I.)
| | - Alexander S. Shmakov
- Department of Plant Physiology, Russian State Agrarian University—Moscow Timiryazev Agricultural Academy, Timiryazevskaya Str., 49, 127550 Moscow, Russia; (D.A.T.); (M.P.L.); (A.S.S.); (N.N.S.); (A.A.I.)
| | - Nikolay N. Sleptsov
- Department of Plant Physiology, Russian State Agrarian University—Moscow Timiryazev Agricultural Academy, Timiryazevskaya Str., 49, 127550 Moscow, Russia; (D.A.T.); (M.P.L.); (A.S.S.); (N.N.S.); (A.A.I.)
| | - Alexander N. Shmarev
- Institute of Basic Biological Problems, Russian Academy of Sciences, 142290 Pushchino, Moscow Region, Russia;
| | - Vladimir A. Litvinskiy
- Borissiak Paleontological Institute, Russian Academy of Sciences, 123, Profsoyuznaya Str., 117647 Moscow, Russia;
| | - Alexander A. Ivlev
- Department of Plant Physiology, Russian State Agrarian University—Moscow Timiryazev Agricultural Academy, Timiryazevskaya Str., 49, 127550 Moscow, Russia; (D.A.T.); (M.P.L.); (A.S.S.); (N.N.S.); (A.A.I.)
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23
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Fiorella RP, Kannenberg SA, Anderegg WRL, Monson RK, Ehleringer JR. Heterogeneous isotope effects decouple conifer leaf and branch sugar δ 18O and δ 13C. Oecologia 2022; 198:357-370. [PMID: 35107645 DOI: 10.1007/s00442-022-05121-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 01/21/2022] [Indexed: 10/19/2022]
Abstract
Isotope ratios of tree-ring cellulose are a prominent tool to reconstruct paleoclimate and plant responses to environmental variation. Current models for cellulose isotope ratios assume a transfer of the environmental signals recorded in bulk leaf water to carbohydrates and ultimately into stem cellulose. However, the isotopic signal of carbohydrates exported from leaf to branch may deviate from mean leaf values if spatial heterogeneity in isotope ratios exists in the leaf. We tested whether the isotopic heterogeneity previously observed along the length of a ponderosa pine (Pinus ponderosa) leaf water was preserved in photosynthetic products. We observed an increase in both sugar and bulk tissue δ18O values along the needle, but the increase in carbohydrate δ18O values was dampened relative to the trend observed in leaf water. In contrast, δ13C values of both sugar and bulk organic matter were invariant along the needle. Phloem-exported sugar measured in the branch below the needles did not match whole-needle values of δ18O or δ13C. Instead, there was a near-constant offset observed between the branch and needle sugar δ13C values, while branch δ18O values were most similar to δ18O values observed for sugar at the base of the needle. The observed offset between the branch and needle sugar δ18O values likely arises from partial isotope oxygen exchange between sugars and water during phloem loading and transport. An improved understanding of the conditions producing differential δ13C and δ18O isotope effects between branch phloem and needle sugars could improve tree-ring-based climate reconstructions.
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Affiliation(s)
- Richard P Fiorella
- Department of Geology and Geophysics, University of Utah, Salt Lake City, UT, 84112, USA.
- Global Change and Sustainability Center, University of Utah, Salt Lake City, UT, 84112, USA.
- Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA.
| | - Steven A Kannenberg
- School of Biological Sciences, University of Utah, Salt Lake City, UT, 84112, USA
| | - William R L Anderegg
- Global Change and Sustainability Center, University of Utah, Salt Lake City, UT, 84112, USA
- School of Biological Sciences, University of Utah, Salt Lake City, UT, 84112, USA
| | - Russell K Monson
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721, USA
- Laboratory of Tree Ring Research, University of Arizona, Tucson, AZ, 85721, USA
| | - James R Ehleringer
- Global Change and Sustainability Center, University of Utah, Salt Lake City, UT, 84112, USA
- School of Biological Sciences, University of Utah, Salt Lake City, UT, 84112, USA
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Lavergne A, Hemming D, Prentice IC, Guerrieri R, Oliver RJ, Graven H. Global decadal variability of plant carbon isotope discrimination and its link to gross primary production. GLOBAL CHANGE BIOLOGY 2022; 28:524-541. [PMID: 34626040 PMCID: PMC9298043 DOI: 10.1111/gcb.15924] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 09/29/2021] [Indexed: 05/31/2023]
Abstract
Carbon isotope discrimination (Δ13 C) in C3 woody plants is a key variable for the study of photosynthesis. Yet how Δ13 C varies at decadal scales, and across regions, and how it is related to gross primary production (GPP), are still incompletely understood. Here we address these questions by implementing a new Δ13 C modelling capability in the land-surface model JULES incorporating both photorespiratory and mesophyll-conductance fractionations. We test the ability of four leaf-internal CO2 concentration models embedded in JULES to reproduce leaf and tree-ring (TR) carbon isotopic data. We show that all the tested models tend to overestimate average Δ13 C values, and to underestimate interannual variability in Δ13 C. This is likely because they ignore the effects of soil water stress on stomatal behavior. Variations in post-photosynthetic isotopic fractionations across species, sites and years, may also partly explain the discrepancies between predicted and TR-derived Δ13 C values. Nonetheless, the "least-cost" (Prentice) model shows the lowest biases with the isotopic measurements, and lead to improved predictions of canopy-level carbon and water fluxes. Overall, modelled Δ13 C trends vary strongly between regions during the recent (1979-2016) historical period but stay nearly constant when averaged over the globe. Photorespiratory and mesophyll effects modulate the simulated global Δ13 C trend by 0.0015 ± 0.005‰ and -0.0006 ± 0.001‰ ppm-1 , respectively. These predictions contrast with previous findings based on atmospheric carbon isotope measurements. Predicted Δ13 C and GPP tend to be negatively correlated in wet-humid and cold regions, and in tropical African forests, but positively related elsewhere. The negative correlation between Δ13 C and GPP is partly due to the strong dominant influences of temperature on GPP and vapor pressure deficit on Δ13 C in those forests. Our results demonstrate that the combined analysis of Δ13 C and GPP can help understand the drivers of photosynthesis changes in different climatic regions.
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Affiliation(s)
| | - Deborah Hemming
- Met Office Hadley CentreExeterUK
- Birmingham Institute of Forest ResearchBirminghamUK
| | - Iain Colin Prentice
- Department of Life SciencesGeorgina Mace Centre for the Living PlanetImperial College LondonAscotUK
- Grantham Institute – Climate Change and the EnvironmentImperial College LondonLondonUK
- Department of Biological SciencesMacquarie UniversityNorth RydeNew South WalesAustralia
- Department of Earth System ScienceTsinghua UniversityBeijingChina
| | - Rossella Guerrieri
- Department of Agricultural and Food SciencesUniversity of BolognaBolognaItaly
| | | | - Heather Graven
- Department of PhysicsImperial College LondonLondonUK
- Grantham Institute – Climate Change and the EnvironmentImperial College LondonLondonUK
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25
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Roy S, Ghosh S, Sanyal P. Carbon reservoir perturbations induced by Deccan volcanism: Stable isotope and biomolecular perspectives from shallow marine environment in Eastern India. GEOBIOLOGY 2022; 20:22-40. [PMID: 34519399 DOI: 10.1111/gbi.12468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2020] [Accepted: 08/27/2021] [Indexed: 06/13/2023]
Abstract
The Deccan Traps in Western India is hypothesized to have caused significant fluctuations in climatic condition and organic matter (OM) productivity across the Cretaceous-Paleogene Boundary (K/PgB). The periodic release of large amounts of volatiles into the atmosphere is thought to drive these changes. Yet, direct impact of volcanism on the carbon cycle and ecosystem remains relatively unconstrained. For the first time, we attempt to trace changes in both marine and terrestrial carbon reservoirs from pre- and intervolcanic sedimentary units (infra- and inter-trappeans respectively) from Rajahmundry, ~1500 km SE of main eruption sites in Western India. Molecular level characterization of OM and stable isotope composition of carbonates (δ13 Ccarb ), bulk OM (δ13 Corg ), and n-alkane (δ13 Calk and δDalk ) have been analysed to provide a chemo-stratigraphic framework. In Rajahmundry, high CO2 concentration estimated from infra-trappean carbonate nodule is synchronous with the onset of the Deccan Traps and the Late Maastrichtian warming episode. Impact of the warming event is reflected in Rajahmundry from a major shift in the terrestrial ecosystem. Marine OM production also seems to have been low throughout the infra-trappean. A steady decrease in δ13 Ccarb values, increase in mortality rates and dwarfism in invertebrates immediately below the first volcanic units in Rajahmundry suggest stressed conditions from eruption in the western part of India ~40-60 kyrs prior to K/PgB. A significant increase in heterotrophic activity is observed after the volcanic deposits in Rajahmundry that seems to have controlled the marine carbon reservoir for a maximum of ~200 kyrs after the boundary. Advent of pteridophytes, increase in carbon content and positive shifts in δ13 Ccarb and δ13 Calk values in the upper inter-trappean units mark the onset of recovery in terrestrial and marine environments. Overall, our results suggest significant perturbations in the carbon reservoir as a consequence of the Deccan eruption.
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Affiliation(s)
- Sohom Roy
- Department of Earth Sciences, Indian Institute of Science Education and Research Kolkata, Nadia, West Bengal, India
| | - Sambit Ghosh
- Department of Earth Sciences, Indian Institute of Science Education and Research Kolkata, Nadia, West Bengal, India
| | - Prasanta Sanyal
- Department of Earth Sciences, Indian Institute of Science Education and Research Kolkata, Nadia, West Bengal, India
- Centre for Climate and Environmental Studies, Indian Institute of Science Education and Research Kolkata, Nadia, West Bengal, India
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26
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Rapid increases in shrubland and forest intrinsic water-use efficiency during an ongoing megadrought. Proc Natl Acad Sci U S A 2021; 118:2118052118. [PMID: 34930849 DOI: 10.1073/pnas.2118052118] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/11/2021] [Indexed: 11/18/2022] Open
Abstract
Globally, intrinsic water-use efficiency (iWUE) has risen dramatically over the past century in concert with increases in atmospheric CO2 concentration. This increase could be further accelerated by long-term drought events, such as the ongoing multidecadal "megadrought" in the American Southwest. However, direct measurements of iWUE in this region are rare and largely constrained to trees, which may bias estimates of iWUE trends toward more mesic, high elevation areas and neglect the responses of other key plant functional types such as shrubs that are dominant across much of the region. Here, we found evidence that iWUE is increasing in the Southwest at one of the fastest rates documented due to the recent drying trend. These increases were particularly large across three common shrub species, which had a greater iWUE sensitivity to aridity than Pinus ponderosa, a common tree species in the western United States. The sensitivity of both shrub and tree iWUE to variability in atmospheric aridity exceeded their sensitivity to increasing atmospheric [CO2]. The shift to more water-efficient vegetation would be, all else being equal, a net positive for plant health. However, ongoing trends toward lower plant density, diminished growth, and increasing vegetation mortality across the Southwest indicate that this increase in iWUE is unlikely to offset the negative impacts of aridification.
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27
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Choi SH, Shin WJ, Bong YS, Lee KS. Determination of the geographic origin of garlic using the bioelement content and isotope signatures. Food Control 2021. [DOI: 10.1016/j.foodcont.2021.108339] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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28
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Metcalfe JZ. C 3 plant isotopic variability in a boreal mixed woodland: implications for bison and other herbivores. PeerJ 2021; 9:e12167. [PMID: 34631314 PMCID: PMC8466085 DOI: 10.7717/peerj.12167] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Accepted: 08/26/2021] [Indexed: 11/20/2022] Open
Abstract
Plant isotopic baselines are critical for accurately reconstructing ancient diets and environments and for using stable isotopes to monitor ecosystem conservation. This study examines the stable carbon and nitrogen isotope compositions (δ 13C, δ 15N) of terrestrial C3 plants in Elk Island National Park (EINP), Alberta, Canada, with a focus on plants consumed by grazers. EINP is located in a boreal mixed woodland ecozone close to the transition area between historic wood and plains bison habitats, and is currently home to separate herds of wood and plains bison. For this study, 165 C3 plant samples (grasses, sedges, forbs, shrubs, and horsetail) were collected from three habitat types (open, closed, and wet) during two seasons (summer and fall). There were no statistically significant differences in the δ 13C or δ 15N values of grasses, sedges, shrubs and forbs. On the other hand, plant δ 13C and δ 15N values varied among habitats and plant parts, and the values increased from summer to fall. These results have several implications for interpreting herbivore tissue isotopic compositions: (1) consuming different proportions of grasses, sedges, shrubs, and forbs might not result in isotopic niche partitioning, (2) feeding in different microhabitats or selecting different parts of the same types of plants could result in isotopic niche partitioning, and (3) seasonal isotopic changes in herbivore tissues could reflect seasonal isotopic changes in dietary plants rather than (or in addition to) changes in animal diet or physiology. In addition, the positively skewed plant δ 15N distributions highlight the need for researchers to carefully evaluate the characteristics of their distributions prior to reporting data (e.g., means, standard deviations) or applying statistical models (e.g., parametric tests that assume normality). Overall, this study reiterates the importance of accessing ecosystem-specific isotopic baselines for addressing research questions in archaeology, paleontology, and ecology.
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Affiliation(s)
- Jessica Z Metcalfe
- Department of Anthropology, Lakehead University, Thunder Bay, Ontario, Canada
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29
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Lowry BE, Wittig RM, Pittermann J, Oelze VM. Stratigraphy of stable isotope ratios and leaf structure within an African rainforest canopy with implications for primate isotope ecology. Sci Rep 2021; 11:14222. [PMID: 34244559 PMCID: PMC8270916 DOI: 10.1038/s41598-021-93589-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Accepted: 06/25/2021] [Indexed: 11/09/2022] Open
Abstract
The canopy effect describes vertical variation in the isotope ratios of carbon (δ13C), oxygen (δ18O) and partially nitrogen (δ15N) within plants throughout a closed canopy forest, and may facilitate the study of canopy feeding niches in arboreal primates. However, the nuanced relationship between leaf height, sunlight exposure and the resulting variation in isotope ratios and leaf mass per area (LMA) has not been documented for an African rainforest. Here, we present δ13C, δ18O and δ15N values of leaves (n = 321) systematically collected from 58 primate food plants throughout the canopy (0.3 to 42 m) in Côte d'Ivoire, West Africa. Besides leaf sample height and light availability, we measured leaf nitrogen and carbon content (%N, %C), as well as LMA (n = 214) to address the plants' vertical resource allocations. We found significant variation in δ13C, δ18O and δ15N, as well as LMA in response to height in combination with light availability and tree species, with low canopy leaves depleted in 13C, 18O and 15N and slightly higher in %N compared to higher canopy strata. While this vertical isotopic variation was not well reflected in the δ13C and δ15N of arboreal primates from this forest, it did correspond well to primate δ18O values.
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Affiliation(s)
- B E Lowry
- Department of Anthropology, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA, 95060, USA.,Department of Ecology and Evolutionary Biology, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA, 95060, USA
| | - R M Wittig
- Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103, Leipzig, Germany.,Taï Chimpanzee Project, Centre Suisse de Recherches Scientifiques, B.P. 1303, Abidjan 01, Côte d'Ivoire
| | - J Pittermann
- Department of Ecology and Evolutionary Biology, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA, 95060, USA
| | - V M Oelze
- Department of Anthropology, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA, 95060, USA.
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30
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Färkkilä SMA, Kiers ET, Jaaniso R, Mäeorg U, Leblanc RM, Treseder KK, Kang Z, Tedersoo L. Fluorescent nanoparticles as tools in ecology and physiology. Biol Rev Camb Philos Soc 2021; 96:2392-2424. [PMID: 34142416 DOI: 10.1111/brv.12758] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 05/26/2021] [Accepted: 05/27/2021] [Indexed: 12/21/2022]
Abstract
Fluorescent nanoparticles (FNPs) have been widely used in chemistry and medicine for decades, but their employment in biology is relatively recent. Past reviews on FNPs have focused on chemical, physical or medical uses, making the extrapolation to biological applications difficult. In biology, FNPs have largely been used for biosensing and molecular tracking. However, concerns over toxicity in early types of FNPs, such as cadmium-containing quantum dots (QDs), may have prevented wide adoption. Recent developments, especially in non-Cd-containing FNPs, have alleviated toxicity problems, facilitating the use of FNPs for addressing ecological, physiological and molecule-level processes in biological research. Standardised protocols from synthesis to application and interdisciplinary approaches are critical for establishing FNPs in the biologists' tool kit. Here, we present an introduction to FNPs, summarise their use in biological applications, and discuss technical issues such as data reliability and biocompatibility. We assess whether biological research can benefit from FNPs and suggest ways in which FNPs can be applied to answer questions in biology. We conclude that FNPs have a great potential for studying various biological processes, especially tracking, sensing and imaging in physiology and ecology.
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Affiliation(s)
- Sanni M A Färkkilä
- Institute of Ecology and Earth Sciences, University of Tartu, Ravila 14a, 50411, Tartu, Estonia
| | - E Toby Kiers
- Department of Ecological Science, Vrije Universiteit Amsterdam, De Boelelaan 1085, NL-1081 HV, Amsterdam, Noord-Holland, The Netherlands
| | - Raivo Jaaniso
- Institute of Physics, University of Tartu, W. Ostwaldi Str 1, 50411, Tartu, Tartumaa, Estonia
| | - Uno Mäeorg
- Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia
| | - Roger M Leblanc
- Department of Chemistry, Cox Science Center, University of Miami, 1301 Memorial Drive, Coral Gables, FL, 33124, U.S.A
| | - Kathleen K Treseder
- Department of Ecology and Evolutionary Biology, School of Biological Sciences, University of California, Irvine, 3106 Biological Sciences III, Mail Code: 2525, 92697, Irvine, CA, U.S.A
| | - Zhenhui Kang
- Institute of Functional Nano and Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-based Functional Materials and Devices, Soochow University, Suzhou, 215123, China
| | - Leho Tedersoo
- Institute of Ecology and Earth Sciences, University of Tartu, Ravila 14a, 50411, Tartu, Estonia
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31
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Eggels S, Blankenagel S, Schön CC, Avramova V. The carbon isotopic signature of C 4 crops and its applicability in breeding for climate resilience. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2021; 134:1663-1675. [PMID: 33575820 PMCID: PMC8205923 DOI: 10.1007/s00122-020-03761-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2020] [Accepted: 12/30/2020] [Indexed: 05/04/2023]
Abstract
KEY MESSAGE Carbon isotope discrimination is a promising trait for indirect screening for improved water use efficiency of C4 crops. In the context of a changing climate, drought is one of the major factors limiting plant growth and yield. Hence, breeding efforts are directed toward improving water use efficiency (WUE) as a key factor in climate resilience and sustainability of crop production. As WUE is a complex trait and its evaluation is rather resource consuming, proxy traits, which are easier to screen and reliably reflect variation in WUE, are needed. In C3 crops, a trait established to be indicative for WUE is the carbon isotopic composition (δ13C) of plant material, which reflects the preferential assimilation of the lighter carbon isotope 12C over 13C during photosynthesis. In C4 crops, carbon fixation is more complex and δ13C thus depends on many more factors than in C3 crops. Recent physiological and genetic studies indicate a correlation between δ13C and WUE also in C4 crops, as well as a colocalization of quantitative trait loci for the two traits. Moreover, significant intraspecific variation as well as a medium to high heritability of δ13C has been shown in some of the main C4 crops, such as maize, sorghum and sugarcane, indicating its potential for indirect selection and breeding. Further research on physiological, genetic and environmental components influencing δ13C is needed to support its application in improving WUE and making C4 crops resilient to climate change.
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Affiliation(s)
- Stella Eggels
- Plant Breeding, TUM School of Life Sciences, Technical University of Munich, Liesel-Beckmann-Straße 2, 85354, Freising, Germany
| | - Sonja Blankenagel
- Plant Breeding, TUM School of Life Sciences, Technical University of Munich, Liesel-Beckmann-Straße 2, 85354, Freising, Germany
| | - Chris-Carolin Schön
- Plant Breeding, TUM School of Life Sciences, Technical University of Munich, Liesel-Beckmann-Straße 2, 85354, Freising, Germany
| | - Viktoriya Avramova
- Plant Breeding, TUM School of Life Sciences, Technical University of Munich, Liesel-Beckmann-Straße 2, 85354, Freising, Germany.
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32
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Cerling TE, Bernasconi SM, Hofstetter LS, Jaggi M, Wyss F, Rudolf von Rohr C, Clauss M. CH4/CO2 Ratios and Carbon Isotope Enrichment Between Diet and Breath in Herbivorous Mammals. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.638568] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Breath and diet samples were collected from 29 taxa of animals at the Zurich and Basel Zoos to characterize the carbon isotope enrichment between breath and diet. Diet samples were measured for δ13C and breath samples for CH4/CO2 ratios and for the respired component of δ13C using the Keeling plot approach. Different digestive physiologies included coprophagous and non-coprophagous hindgut fermenters, and non-ruminant and ruminant foregut fermenters. Isotope enrichments from diet to breath were 0.8 ± 0.9‰, 3.5 ± 0.8‰, 2.3 ± 0.4‰, and 4.1 ± 1.0‰, respectively. CH4/CO2 ratios were strongly correlated with isotope enrichments for both hindgut and foregut digestive strategies, although CH4 production was not the sole reason for isotope enrichment. Average CH4/CO2 ratios per taxon ranged over several orders of magnitude from 10–5 to 10–1. The isotope enrichment values for diet-breath can be used to further estimate the isotope enrichment from diet-enamel because Passey et al. (2005b) found a nearly constant isotope enrichment for breath-enamel for diverse mammalian taxa. The understanding of isotope enrichment factors from diet to breath and diet to enamel will have important applications in the field of animal physiology, and possibly also for wildlife ecology and paleontology.
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33
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Gimeno TE, Campany CE, Drake JE, Barton CVM, Tjoelker MG, Ubierna N, Marshall JD. Whole-tree mesophyll conductance reconciles isotopic and gas-exchange estimates of water-use efficiency. THE NEW PHYTOLOGIST 2021; 229:2535-2547. [PMID: 33217000 DOI: 10.1111/nph.17088] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2020] [Accepted: 11/07/2020] [Indexed: 06/11/2023]
Abstract
Photosynthetic water-use efficiency (WUE) describes the link between terrestrial carbon (C) and water cycles. Estimates of intrinsic WUE (iWUE) from gas exchange and C isotopic composition (δ13 C) differ due to an internal conductance in the leaf mesophyll (gm ) that is variable and seldom computed. We present the first direct estimates of whole-tree gm , together with iWUE from whole-tree gas exchange and δ13 C of the phloem (δ13 Cph ). We measured gas exchange, online 13 C-discrimination, and δ13 Cph monthly throughout spring, summer, and autumn in Eucalyptus tereticornis grown in large whole-tree chambers. Six trees were grown at ambient temperatures and six at a 3°C warmer air temperature; a late-summer drought was also imposed. Drought reduced whole-tree gm . Warming had few direct effects, but amplified drought-induced reductions in whole-tree gm . Whole-tree gm was similar to leaf gm for these same trees. iWUE estimates from δ13 Cph agreed with iWUE from gas exchange, but only after incorporating gm . δ13 Cph was also correlated with whole-tree 13 C-discrimination, but offset by -2.5 ± 0.7‰, presumably due to post-photosynthetic fractionations. We conclude that δ13 Cph is a good proxy for whole-tree iWUE, with the caveats that post-photosynthetic fractionations and intrinsic variability of gm should be incorporated to provide reliable estimates of this trait in response to abiotic stress.
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Affiliation(s)
- Teresa E Gimeno
- Basque Centre for Climate Change (BC3), Leioa, 48940, Spain
- IKERBASQUE, Basque Foundation for Science, Bilbao, 48008, Spain
| | - Courtney E Campany
- Department of Biology, Shepherd University, Shepherdstown, WV, 25443, USA
| | - John E Drake
- Forest and Natural Resources Management, SUNY-ESF, Syracuse, NY, 132110, USA
| | - Craig V M Barton
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, 2751, Australia
| | - Mark G Tjoelker
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, 2751, Australia
| | - Nerea Ubierna
- Research School of Biology, The Australian National University, Acton, ACT, 2601, Australia
| | - John D Marshall
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences (SLU), Skogsmarksgränd 17, 907 36, Umeå, Sweden
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34
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Zeng X, Ni Z, Diao H, Jiang K, Hu C, Shao L, Huang W. Root Endophytic Fungal Community and Carbon and Nitrogen Stable Isotope Patterns Differ among Bletilla Species (Orchidaceae). J Fungi (Basel) 2021; 7:69. [PMID: 33498277 PMCID: PMC7909265 DOI: 10.3390/jof7020069] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 01/15/2021] [Accepted: 01/19/2021] [Indexed: 11/17/2022] Open
Abstract
Orchids of the genus Bletilla are well-known ornamental plants and sources of traditional medicine in Asia that rely on the symbiotic relationship with root endophytic fungi throughout their whole life cycle. However, little is known about their fungal partners, infection pattern, and pathways of carbon gain. We investigated carbon and nitrogen stable isotope patterns in different organs of three Bletilla species, identified the root endophytic fungal community composition, and determined mycorrhizal colonization rates. The three Bletilla species were comprised by a polyphyletic group which belongs to different trophic modes, such as saprotroph, pathotroph, and symbiotroph; however, the dominant species and their abundances varied among Bletilla spp. Mycorrhizal infection rates also varied among Bletilla species, with B. striata (65% ± 25%) being significantly higher than those of B. formosana (35% ± 16%) and B. ochracea (22% ± 13%). Compared with surrounding autotrophic plants, all Bletilla spp. were significantly enriched in 13C with B. striata to a significantly higher level than other two Bletilla species. Among different organs, stems had higher δ13C values, while leaves and flowers had higher δ15N and total N content values across all three species. Our results indicate that the symbiotic relationship of Bletilla and its root endophytic fungi is not strictly specific. Although mycorrhizal infection rates were highly variable, the three Bletilla species had the same infection pattern with hyphae penetrating the cortex cell by the pathway cell. Different Bletilla species have different strategies for C allocation among plant organs. These findings provide new insights into the ecological adaptation of orchids and will contribute to Bletilla germplasm conservation and sustainable utilization.
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Affiliation(s)
- Xinhua Zeng
- Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Chenshan Botanical Garden, Shanghai 201620, China; (X.Z.); (Z.N.); (H.D.); (K.J.); (C.H.); (L.S.)
- Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, Shanghai 201602, China
| | - Ziyi Ni
- Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Chenshan Botanical Garden, Shanghai 201620, China; (X.Z.); (Z.N.); (H.D.); (K.J.); (C.H.); (L.S.)
| | - Haixin Diao
- Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Chenshan Botanical Garden, Shanghai 201620, China; (X.Z.); (Z.N.); (H.D.); (K.J.); (C.H.); (L.S.)
| | - Kai Jiang
- Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Chenshan Botanical Garden, Shanghai 201620, China; (X.Z.); (Z.N.); (H.D.); (K.J.); (C.H.); (L.S.)
- Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, Shanghai 201602, China
| | - Chao Hu
- Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Chenshan Botanical Garden, Shanghai 201620, China; (X.Z.); (Z.N.); (H.D.); (K.J.); (C.H.); (L.S.)
- Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, Shanghai 201602, China
| | - Li Shao
- Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Chenshan Botanical Garden, Shanghai 201620, China; (X.Z.); (Z.N.); (H.D.); (K.J.); (C.H.); (L.S.)
| | - Weichang Huang
- Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Chenshan Botanical Garden, Shanghai 201620, China; (X.Z.); (Z.N.); (H.D.); (K.J.); (C.H.); (L.S.)
- Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, Shanghai 201602, China
- College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
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35
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Candeias M, Fraterrigo J. Trait coordination and environmental filters shape functional trait distributions of forest understory herbs. Ecol Evol 2020; 10:14098-14112. [PMID: 33391703 PMCID: PMC7771138 DOI: 10.1002/ece3.7000] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Revised: 10/25/2020] [Accepted: 10/25/2020] [Indexed: 11/24/2022] Open
Abstract
Understanding the drivers of trait selection is critical for resolving community assembly processes. Here, we test the importance of environmental filtering and trait covariance for structuring the functional traits of understory herbaceous communities distributed along a natural environmental resource gradient that varied in soil moisture, temperature, and nitrogen availability, produced by different topographic positions in the southern Appalachian Mountains.To uncover potential differences in community-level trait responses to the resource gradient, we quantified the averages and variances of both abundance-weighted and unweighted values for six functional traits (vegetative height, leaf area, specific leaf area, leaf dry matter content, leaf nitrogen, and leaf δ13C) using 15 individuals of each of the 108 species of understory herbs found at two sites in the southern Appalachians of western North Carolina, USA.Environmental variables were better predictors of weighted than unweighted community-level average trait values for all but height and leaf N, indicating strong environmental filtering of plant abundance. Community-level variance patterns also showed increased convergence of abundance-weighted traits as resource limitation became more severe.Functional trait covariance patterns based on weighted averages were uniform across the gradient, whereas coordination based on unweighted averages was inconsistent and varied with environmental context. In line with these results, structural equation modeling revealed that unweighted community-average traits responded directly to local environmental variation, whereas weighted community-average traits responded indirectly to local environmental variation through trait coordination.Our finding that trait coordination is more important for explaining the distribution of weighted than unweighted average trait values along the gradient indicates that environmental filtering acts on multiple traits simultaneously, with abundant species possessing more favorable combinations of traits for maximizing fitness in a given environment.
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Affiliation(s)
- Matt Candeias
- Department of Natural Resources and Environmental SciencesUniversity of IllinoisUrbanaILUSA
| | - Jennifer Fraterrigo
- Department of Natural Resources and Environmental SciencesUniversity of IllinoisUrbanaILUSA
- Program in Ecology, Evolution, and Conservation BiologyUniversity of IllinoisUrbanaILUSA
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Lavergne A, Sandoval D, Hare VJ, Graven H, Prentice IC. Impacts of soil water stress on the acclimated stomatal limitation of photosynthesis: Insights from stable carbon isotope data. GLOBAL CHANGE BIOLOGY 2020; 26:7158-7172. [PMID: 32970907 DOI: 10.1111/gcb.15364] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Accepted: 09/15/2020] [Indexed: 05/08/2023]
Abstract
Atmospheric aridity and drought both influence physiological function in plant leaves, but their relative contributions to changes in the ratio of leaf internal to ambient partial pressure of CO2 (χ) - an index of adjustments in both stomatal conductance and photosynthetic rate to environmental conditions - are difficult to disentangle. Many stomatal models predicting χ include the influence of only one of these drivers. In particular, the least-cost optimality hypothesis considers the effect of atmospheric demand for water on χ but does not predict how soils with reduced water further influence χ, potentially leading to an overestimation of χ under dry conditions. Here, we use a large network of stable carbon isotope measurements in C3 woody plants to examine the acclimated response of χ to soil water stress. We estimate the ratio of cost factors for carboxylation and transpiration (β) expected from the theory to explain the variance in the data, and investigate the responses of β (and thus χ) to soil water content and suction across seed plant groups, leaf phenological types and regions. Overall, β decreases linearly with soil drying, implying that the cost of water transport along the soil-plant-atmosphere continuum increases as water available in the soil decreases. However, despite contrasting hydraulic strategies, the stomatal responses of angiosperms and gymnosperms to soil water tend to converge, consistent with the optimality theory. The prediction of β as a simple, empirical function of soil water significantly improves χ predictions by up to 6.3 ± 2.3% (mean ± SD of adjusted-R2 ) over 1980-2018 and results in a reduction of around 2% of mean χ values across the globe. Our results highlight the importance of soil water status on stomatal functions and plant water-use efficiency, and suggest the implementation of trait-based hydraulic functions into the model to account for soil water stress.
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Affiliation(s)
- Aliénor Lavergne
- Carbon Cycle Research Group, Space and Atmospheric Physics, Department of Physics, Imperial College London, London, UK
| | - David Sandoval
- Department of Life Sciences, Imperial College London, Ascot, UK
| | - Vincent J Hare
- Carbon Cycle Research Group, Space and Atmospheric Physics, Department of Physics, Imperial College London, London, UK
- Stable Light Isotope Laboratory, University of Cape Town, Cape Town, South Africa
| | - Heather Graven
- Carbon Cycle Research Group, Space and Atmospheric Physics, Department of Physics, Imperial College London, London, UK
- Grantham Institute - Climate Change and the Environment, Imperial College London, London, UK
| | - Iain Colin Prentice
- Department of Life Sciences, Imperial College London, Ascot, UK
- Grantham Institute - Climate Change and the Environment, Imperial College London, London, UK
- Department of Biological Sciences, Macquarie University, North Ryde, NSW, Australia
- Department of Earth System Science, Tsinghua University, Beijing, China
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Locosselli GM, Brienen RJW, de Souza Martins VT, Gloor E, Boom A, de Camargo EP, Saldiva PHN, Buckeridge MS. Intra-annual oxygen isotopes in the tree rings record precipitation extremes and water reservoir levels in the Metropolitan Area of São Paulo, Brazil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 743:140798. [PMID: 32758845 DOI: 10.1016/j.scitotenv.2020.140798] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 07/02/2020] [Accepted: 07/05/2020] [Indexed: 06/11/2023]
Abstract
The impacts of climate change on precipitation and the growing demand for water have increased the water risks worldwide. Water scarcity is one of the main challenges of the 21st century, and the assessment of water risks is only possible from spatially distributed records of historical climate and levels of water reservoirs. One potential method to assess water supply is the reconstruction of oxygen isotopes in rainfall. We here investigated the use of tree-ring stable isotopes in urban trees to assess spatial/temporal variation in precipitation and level of water reservoirs. We analyzed the intra-annual variation of δ13C and δ18O in the tree rings of Tipuana tipu trees from northern and southern Metropolitan Area of São Paulo (MASP), Brazil. While variation in δ13C indicates low leaf-level enrichments from evapotranspiration, δ18O variation clearly reflects precipitation extremes. Tree-ring δ18O was highest during the 2014 drought, associated with the lowest historical reservoir levels in the city. The δ18O values from the middle of the tree rings have a strong association with the mid-summer precipitation (r = -0.71), similar to the association between the volume of precipitation and its δ18O signature (r = -0.76). These consistent results allowed us to test the association between tree-ring δ18O and water-level of the main reservoirs that supply the MASP. We observed a strong association between intra-annual tree-ring δ18O and the water-level of reservoirs in the northern and southern MASP (r = -0.94, r = -0.90, respectively). These results point to the potential use of high-resolution tree-ring stable isotopes to put precipitation extremes, and water supply, in a historical perspective assisting public policies related to water risks and climate change. The ability to record precipitation extremes, and previously reported capacity to record air pollution, place Tipuana tipu in a prominent position as a reliable environmental monitor for urban locations.
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Affiliation(s)
- Giuliano Maselli Locosselli
- Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil; Instituto de Estudos Avançados, Universidade de São Paulo, São Paulo, Brazil.
| | | | | | - Emanuel Gloor
- School of Geography, University of Leeds, Leeds, United Kingdom
| | - Arnoud Boom
- Department of Geography, University of Leicester, Leicester, United Kingdom
| | | | | | - Marcos Silveira Buckeridge
- Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil; Instituto de Estudos Avançados, Universidade de São Paulo, São Paulo, Brazil
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Vogado NO, Winter K, Ubierna N, Farquhar GD, Cernusak LA. Directional change in leaf dry matter δ 13C during leaf development is widespread in C3 plants. ANNALS OF BOTANY 2020; 126:981-990. [PMID: 32577724 PMCID: PMC7596372 DOI: 10.1093/aob/mcaa114] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Accepted: 06/17/2020] [Indexed: 05/23/2023]
Abstract
BACKGROUND AND AIMS The stable carbon isotope ratio of leaf dry matter (δ 13Cp) is generally a reliable recorder of intrinsic water-use efficiency in C3 plants. Here, we investigated a previously reported pattern of developmental change in leaf δ 13Cp during leaf expansion, whereby emerging leaves are initially 13C-enriched compared to mature leaves on the same plant, with their δ 13Cp decreasing during leaf expansion until they eventually take on the δ 13Cp of other mature leaves. METHODS We compiled data to test whether the difference between mature and young leaf δ 13Cp differs between temperate and tropical species, or between deciduous and evergreen species. We also tested whether the developmental change in δ 13Cp is indicative of a concomitant change in intrinsic water-use efficiency. To gain further insight, we made online measurements of 13C discrimination (∆ 13C) in young and mature leaves. KEY RESULTS We found that the δ 13Cp difference between mature and young leaves was significantly larger for deciduous than for evergreen species (-2.1 ‰ vs. -1.4 ‰, respectively). Counter to expectation based on the change in δ 13Cp, intrinsic water-use efficiency did not decrease between young and mature leaves; rather, it did the opposite. The ratio of intercellular to ambient CO2 concentrations (ci/ca) was significantly higher in young than in mature leaves (0.86 vs. 0.72, respectively), corresponding to lower intrinsic water-use efficiency. Accordingly, instantaneous ∆ 13C was also higher in young than in mature leaves. Elevated ci/ca and ∆ 13C in young leaves resulted from a combination of low photosynthetic capacity and high day respiration rates. CONCLUSION The decline in leaf δ 13Cp during leaf expansion appears to reflect the addition of the expanding leaf's own 13C-depleted photosynthetic carbon to that imported from outside the leaf as the leaf develops. This mixing of carbon sources results in an unusual case of isotopic deception: less negative δ 13Cp in young leaves belies their low intrinsic water-use efficiency.
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Affiliation(s)
- Nara O Vogado
- Centre for Tropical Environmental and Sustainability Science, College of Science and Engineering, James Cook University, Cairns, Australia
| | - Klaus Winter
- Smithsonian Tropical Research Institute, Balboa, Ancon, Republic of Panama
| | - Nerea Ubierna
- Research School of Biology, The Australian National University, Canberra, Australia
| | - Graham D Farquhar
- Research School of Biology, The Australian National University, Canberra, Australia
| | - Lucas A Cernusak
- Centre for Tropical Environmental and Sustainability Science, College of Science and Engineering, James Cook University, Cairns, Australia
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Oelze VM, Percher AM, Nsi Akoué G, El Ksabi N, Willaume E, Charpentier MJE. Seasonality and interindividual variation in mandrill feeding ecology revealed by stable isotope analyses of hair and blood. Am J Primatol 2020; 82:e23206. [PMID: 33075182 DOI: 10.1002/ajp.23206] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2020] [Revised: 10/02/2020] [Accepted: 10/03/2020] [Indexed: 11/11/2022]
Abstract
Mandrills are large-bodied terrestrial forest primates living in particularly large social groups of several hundred individuals. Following these groups in the wild to assess differences in diet over time as well as among individuals is demanding. We here use isotope analyses in blood and hair obtained during repeated captures of 43 identified free-ranging mandrills (Mandrillus sphinx) from Southern Gabon, to test how dietary variation relates to the season as well as an individual's age and sex. We measured the stable carbon (δ13 C‰) and nitrogen (δ15 N‰) isotope ratios in 46 blood and 214 hair section samples as well as from a small selection of mandrill foods (n = 24). We found some seasonal isotopic effects, with lower δ13 C values but higher δ15 N values observed during the highly competitive long dry season compared to the fruit-rich long rainy season. Variation in δ13 C was further predicted by individual age, with higher δ13 C values generally found in younger individuals suggesting that they may consume more high canopy fruit than older individuals, or that older individuals consume more low canopy foliage. The best predictor for δ15 N values was the interaction between age and sex, with mature and reproductively active males revealing the highest δ15 N values, despite the observation that males consume substantially less animal food items than females. We interpret high δ15 N values in these mature male mandrill blood and hair sections to be the result of nutritional stress associated with intense male-male competition, particularly during mating season. This is the first study showing isotopic evidence for nutritional stress in a free-ranging primate species and may spark further investigations into male mandrill diet and energy balance.
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Affiliation(s)
- Vicky M Oelze
- Department of Anthropology, University of California Santa Cruz, Santa Cruz, California, USA.,Department of Primatology, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Alice M Percher
- Equipe Biologie Evolutive Humaine, Institut des Sciences de l'Évolution de Montpellier UMR5554, CNRS, IRD, EPHE, Université de Montpellier, Montpellier, France
| | - Gontran Nsi Akoué
- Département de Biologie, Université des Sciences et Techniques de Masuku, Franceville, Gabon
| | | | | | - Marie J E Charpentier
- Equipe Biologie Evolutive Humaine, Institut des Sciences de l'Évolution de Montpellier UMR5554, CNRS, IRD, EPHE, Université de Montpellier, Montpellier, France
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Vernay A, Tian X, Chi J, Linder S, Mäkelä A, Oren R, Peichl M, Stangl ZR, Tor-Ngern P, Marshall JD. Estimating canopy gross primary production by combining phloem stable isotopes with canopy and mesophyll conductances. PLANT, CELL & ENVIRONMENT 2020; 43:2124-2142. [PMID: 32596814 DOI: 10.1111/pce.13835] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 06/21/2020] [Accepted: 06/22/2020] [Indexed: 06/11/2023]
Abstract
Gross primary production (GPP) is a key component of the forest carbon cycle. However, our knowledge of GPP at the stand scale remains uncertain, because estimates derived from eddy covariance (EC) rely on semi-empirical modelling and the assumptions of the EC technique are sometimes not fully met. We propose using the sap flux/isotope method as an alternative way to estimate canopy GPP, termed GPPiso/SF , at the stand scale and at daily resolution. It is based on canopy conductance inferred from sap flux and intrinsic water-use efficiency estimated from the stable carbon isotope composition of phloem contents. The GPPiso/SF estimate was further corrected for seasonal variations in photosynthetic capacity and mesophyll conductance. We compared our estimate of GPPiso/SF to the GPP derived from PRELES, a model parameterized with EC data. The comparisons were performed in a highly instrumented, boreal Scots pine forest in northern Sweden, including a nitrogen fertilized and a reference plot. The resulting annual and daily GPPiso/SF estimates agreed well with PRELES, in the fertilized plot and the reference plot. We discuss the GPPiso/SF method as an alternative which can be widely applied without terrain restrictions, where the assumptions of EC are not met.
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Affiliation(s)
- Antoine Vernay
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Xianglin Tian
- Department of Forest Sciences, University of Helsinki, Helsinki, Finland
| | - Jinshu Chi
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Sune Linder
- Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Annikki Mäkelä
- Department of Forest Sciences, University of Helsinki, Helsinki, Finland
| | - Ram Oren
- Department of Forest Sciences, University of Helsinki, Helsinki, Finland
- Division of Environmental Science & Policy, Nicholas School of the Environment, Duke University, Durham, North Carolina, USA
- Department of Civil & Environmental Engineering, Pratt School of Engineering, Duke University, Durham, North Carolina, USA
| | - Matthias Peichl
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Zsofia R Stangl
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Pantana Tor-Ngern
- Department of Environmental Science, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
- Environment, Health and Social Data Analytics Research Group, Chulalongkorn University, Bangkok, Thailand
| | - John D Marshall
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
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Guerrieri R, Vanguelova E, Pitman R, Benham S, Perks M, Morison JIL, Mencuccini M. Climate and atmospheric deposition effects on forest water-use efficiency and nitrogen availability across Britain. Sci Rep 2020; 10:12418. [PMID: 32709879 PMCID: PMC7381603 DOI: 10.1038/s41598-020-67562-w] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2018] [Accepted: 06/08/2020] [Indexed: 11/09/2022] Open
Abstract
Rising atmospheric CO2 (ca) has been shown to increase forest carbon uptake. Yet, whether the ca-fertilization effect on forests is modulated by changes in sulphur (Sdep) and nitrogen (Ndep) deposition and how Ndep affects ecosystem N availability remains unclear. We explored spatial and temporal (over 30-years) changes in tree-ring δ13C-derived intrinsic water-use efficiency (iWUE), δ18O and δ15N for four species in twelve forests across climate and atmospheric deposition gradients in Britain. The increase in iWUE was not uniform across sites and species-specific underlying physiological mechanisms reflected the interactions between climate and atmospheric drivers (oak and Scots pine), but also an age effect (Sitka spruce). Most species showed no significant trends for tree-ring δ15N, suggesting no changes in N availability. Increase in iWUE was mostly associated with increase in temperature and decrease in moisture conditions across the South-North gradient and over 30-years. However, when excluding Sitka spruce (to account for age or stand development effects), variations in iWUE were significantly associated with changes in ca and Sdep. Our data suggest that overall climate had the prevailing effect on changes in iWUE across the investigated sites. Whereas, detection of Ndep, Sdep and ca signals was partially confounded by structural changes during stand development.
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Affiliation(s)
- Rossella Guerrieri
- Centre for Ecological Research and Forestry Applications, CREAF, c/o Universidad Autonoma de Barcelona, Edificio C, 08290, Cerdanyola, Barcelona, Spain.
- Department of Agricultural and Food Sciences, University of Bologna, 40127, Bologna, Italy.
| | - Elena Vanguelova
- Forest Research, Alice Holt Lodge, Farnham, Surrey, GU10 4LH, UK
| | - Rona Pitman
- Forest Research, Alice Holt Lodge, Farnham, Surrey, GU10 4LH, UK
| | - Sue Benham
- Forest Research, Alice Holt Lodge, Farnham, Surrey, GU10 4LH, UK
| | - Michael Perks
- Forest Research, Northern Research Station, Roslin, EH25 9SY, Midlothian, Scotland, UK
| | | | - Maurizio Mencuccini
- Centre for Ecological Research and Forestry Applications, CREAF, c/o Universidad Autonoma de Barcelona, Edificio C, 08290, Cerdanyola, Barcelona, Spain
- ICREA, Barcelona, Spain
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Teixeira MC, Vitória AP, de Rezende CE, de Almeida MG, Nardoto GB. Consequences of removal of exotic species (eucalyptus) on carbon and nitrogen cycles in the soil-plant system in a secondary tropical Atlantic forest in Brazil with a dual-isotope approach. PeerJ 2020; 8:e9222. [PMID: 32523812 PMCID: PMC7261475 DOI: 10.7717/peerj.9222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 04/29/2020] [Indexed: 11/20/2022] Open
Abstract
The impact of exotic species on heterogeneous native tropical forest requires the understanding on which temporal and spatial scales these processes take place. Functional tracers such as carbon (δ13C) and nitrogen (δ15N) isotopic composition in the soil-plant system might help track the alterations induced by the exotic species. Thus, we assess the effects from the removal of the exotic species eucalyptus (Corymbia cytriodora) in an Atlantic forest Reserve, and eucalyptus removal on the alteration of the nutrient dynamics (carbon and nitrogen). The hypotheses were: (1) the eucalyptus permanence time altered δ13C and δ15N in leaves, soils and litter fractions (leaves, wood, flowers + fruits, and rest); and (2) eucalyptus removal furthered decomposition process of the soil organic matter. Hence, we determined the soil granulometry, the δ13C and δ15N in leaves, in the superficial soil layer, and litter in three sites: a secondary forest in the Atlantic forest, and other two sites where eucalyptus had been removed in different times: 12 and 3 months ago (M12 and M3, respectively). Litter samples presented intermediate δ13C and δ15N values in comparison with leaves and soil. In the M3, the greater δ13C values in both litter rest fraction and soil indicate the presence, cycling and soil incorporation of C, coming from the C4 photosynthesis of grassy species (Poaceae). In the secondary forest, the soil δ15N values were twice higher, compared with the eucalyptus removal sites, revealing the negative influence from these exotic species upon the ecosystem N dynamics. In the M12, the leaves presented higher δ13C mean value and lower δ15N values, compared with those from the other sites. The difference of δ13C values in the litter fractions regarding the soil led to a greater fractioning of 13C in all sites, except the flower + fruit fractions in the secondary forest, and the rest fraction in the M3 site. We conclude that the permanence of this exotic species and the eucalyptus removal have altered the C and N isotopic and elemental compositions in the soil-plant system. Our results suggest there was organic matter decomposition in all litter fractions and in all sites. However, a greater organic matter decomposition process was observed in the M3 soil, possibly because of a more intense recent input of vegetal material, as well as the presence of grassy, easily-decomposing herbaceous species, only in this site. Therefore, the dual-isotope approach generated a more integrated picture of the impact on the ecosystem after removing eucalyptus in this secondary Atlantic forest, and could be regarded as an option for future eucalyptus removal studies.
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Affiliation(s)
- Milena Carvalho Teixeira
- Laboratório de Ciências Ambientais, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes, Rio de Janeiro, Brazil
| | - Angela Pierre Vitória
- Laboratório de Ciências Ambientais, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes, Rio de Janeiro, Brazil
| | - Carlos Eduardo de Rezende
- Laboratório de Ciências Ambientais, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes, Rio de Janeiro, Brazil
| | - Marcelo Gomes de Almeida
- Laboratório de Ciências Ambientais, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes, Rio de Janeiro, Brazil
| | - Gabriela B. Nardoto
- Departamento de Ecologia, Universidade de Brasília, Brasília, Distrito Federal, Brazil
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Herrera A. Are thick leaves, large mesophyll cells and small intercellular air spaces requisites for CAM? ANNALS OF BOTANY 2020; 125:859-868. [PMID: 31970387 PMCID: PMC7218806 DOI: 10.1093/aob/mcaa008] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2019] [Accepted: 01/21/2020] [Indexed: 05/13/2023]
Abstract
BACKGROUND AND AIMS It is commonly accepted that the leaf of a crassulacean acid metabolism (CAM) plant is thick, with large mesophyll cells and vacuoles that can accommodate the malic acid produced during the night. The link between mesophyll characteristics and CAM mode, whether obligate or C3/CAM, was evaluated. METHODS Published values of the carbon isotopic ratio (δ 13C) as an indicator of CAM, leaf thickness, leaf micrographs and other evidence of CAM operation were used to correlate cell density, cell area, the proportion of intercellular space in the mesophyll (IAS) and the length of cell wall facing the intercellular air spaces (Lmes/A) with CAM mode. KEY RESULTS Based on 81 species and relatively unrelated families (15) belonging to nine orders, neither leaf thickness nor mesophyll traits helped explain the degree of CAM expression. A strong correlation was found between leaf thickness and δ 13C in some species of Crassulaceae and between leaf thickness and nocturnal acid accumulation in a few obligate CAM species of Bromeliaceae but, when all 81 species were pooled together, no significant changes with δ 13C were observed in cell density, cell area, IAS or Lmes/A. CONCLUSIONS An influence of phylogeny on leaf anatomy was evidenced in a few cases but this precluded generalization for widely separate taxa containing CAM species. The possible relationships between leaf anatomy and CAM mode should be interpreted cautiously.
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Affiliation(s)
- Ana Herrera
- Centro de Botánica Tropical, Instituto de Biología Experimental, Universidad Central de Venezuela, Caracas, Venezuela
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Cernusak LA. Gas exchange and water-use efficiency in plant canopies. PLANT BIOLOGY (STUTTGART, GERMANY) 2020; 22 Suppl 1:52-67. [PMID: 30428160 DOI: 10.1111/plb.12939] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2018] [Accepted: 11/08/2018] [Indexed: 06/09/2023]
Abstract
In this review, I first address the basics of gas exchange, water-use efficiency and carbon isotope discrimination in C3 plant canopies. I then present a case study of water-use efficiency in northern Australian tree species. In general, C3 plants face a trade-off whereby increasing stomatal conductance for a given set of conditions will result in a higher CO2 assimilation rate, but a lower photosynthetic water-use efficiency. A common garden experiment suggested that tree species which are able to establish and grow in drier parts of northern Australia have a capacity to use water rapidly when it is available through high stomatal conductance, but that they do so at the expense of low water-use efficiency. This may explain why community-level carbon isotope discrimination does not decrease as steeply with decreasing rainfall on the North Australian Tropical Transect as has been observed on some other precipitation gradients. Next, I discuss changes in water-use efficiency that take place during leaf expansion in C3 plant leaves. Leaf phenology has recently been recognised as a significant driver of canopy gas exchange in evergreen forest canopies, and leaf expansion involves changes in both photosynthetic capacity and water-use efficiency. Following this, I discuss the role of woody tissue respiration in canopy gas exchange and how photosynthetic refixation of respired CO2 can increase whole-plant water-use efficiency. Finally, I discuss the role of water-use efficiency in driving terrestrial plant responses to global change, especially the rising concentration of atmospheric CO2 . In coming decades, increases in plant water-use efficiency caused by rising CO2 are likely to partially mitigate impacts on plants of drought stress caused by global warming.
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Affiliation(s)
- L A Cernusak
- College of Science and Engineering, James Cook University, Cairns, Australia
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45
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Smith MR, Fuentes D, Merchant A. Chemical and isotopic markers detect water deficit and its influence on nutrient allocation in Phaseolus vulgaris. PHYSIOLOGIA PLANTARUM 2019; 167:391-403. [PMID: 30548265 DOI: 10.1111/ppl.12899] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2018] [Revised: 12/02/2018] [Accepted: 12/04/2018] [Indexed: 06/09/2023]
Abstract
The impact of drought on plant growth and yield has been widely studied and is considered a major limitation to crops reaching yield potential. Less known is the impact of water deficit on the nutritional quality of the resulting yield. This study characterised the impact of water deficit on carbon assimilation, modelled water use efficiency from carbon isotope discrimination and analysed the concentration of mineral nutrients, amino acids and sugars in leaf, phloem and pod pools collected from Phaseolus vulgaris L. (common bean) grown in a controlled environment. Water deficit led to an isohydric response, impacting on carbon isotope abundance in all tissues though not translating to any significant treatment differences in water use efficiency or nutrient content in tissues over the course of plant development. The results obtained in this study demonstrate that nutrient content of P. vulgaris yield was not impacted by the availability of water. The absence of significant changes in the nutrient content of individual seeds highlights the plasticity of developing reproductive tissue to changes in whole plant water availability.
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Affiliation(s)
- Millicent R Smith
- School of Life and Environmental Sciences, Faculty of Science, Sydney Institute of Agriculture, The University of Sydney, Sydney, NSW, Australia
| | - David Fuentes
- School of Life and Environmental Sciences, Faculty of Science, Sydney Institute of Agriculture, The University of Sydney, Sydney, NSW, Australia
| | - Andrew Merchant
- School of Life and Environmental Sciences, Faculty of Science, Sydney Institute of Agriculture, The University of Sydney, Sydney, NSW, Australia
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Suetsugu K, Yamato M, Matsubayashi J, Tayasu I. Comparative study of nutritional mode and mycorrhizal fungi in green and albino variants of Goodyera velutina, an orchid mainly utilizing saprotrophic rhizoctonia. Mol Ecol 2019; 28:4290-4299. [PMID: 31448451 DOI: 10.1111/mec.15213] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Revised: 07/05/2019] [Accepted: 07/22/2019] [Indexed: 01/30/2023]
Abstract
The majority of chlorophyllous orchids form mycorrhizal associations with so-called rhizoctonia fungi, a phylogenetically heterogeneous assemblage of predominantly saprotrophic fungi in Ceratobasidiaceae, Tulasnellaceae, and Serendipitaceae. It is still a matter of debate whether adult orchids mainly associated with rhizoctonia species are partially mycoheterotrophic. Here, we investigated the nutritional modes of green and albino variants of Goodyera velutina, an orchid species considered to be mainly associated with Ceratobasidium spp., by measuring their 13 C and 15 N abundances, and by molecular barcoding of their mycorrhizal fungi. Molecular analysis revealed that both green and albino variants of G. velutina harbored a similar range of mycobionts, mainly saprotrophic Ceratobasidium spp., Tulasnella spp., and ectomycorrhizal Russula spp. In addition, stable isotope analysis revealed that albino variants were significantly enriched in 13 C but not so greatly in 15 N, suggesting that saprotrophic Ceratobasidium spp. and Tulasnella spp. are their main carbon source. However, in green variants, 13 C levels were depleted and those of 15 N were indistinguishable from the co-occurring autotrophic plants. Therefore, we concluded that the albino G. velutina variants are fully mycoheterotrophic plants whose C derives mainly from saprotrophic rhizoctonia, while the green G. velutina variants are mainly autotrophic plants, at least at our study site, in spite of their additional associations with ectomycorrhizal fungi. This is the first report demonstrating that adult nonphotosynthetic albino variants can obtain their nutrition mainly from nonectomycorrhizal rhizoctonia.
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Affiliation(s)
- Kenji Suetsugu
- Department of Biology, Graduate School of Science, Kobe University, Kobe, Japan
| | | | - Jun Matsubayashi
- Department of Biogeochemistry, Japan Agency for Marine-Earth Science and Technology, Yokosuka, Japan
| | - Ichiro Tayasu
- Research Institute for Humanity and Nature, Kyoto, Japan
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Bögelein R, Lehmann MM, Thomas FM. Differences in carbon isotope leaf-to-phloem fractionation and mixing patterns along a vertical gradient in mature European beech and Douglas fir. THE NEW PHYTOLOGIST 2019; 222:1803-1815. [PMID: 30740705 DOI: 10.1111/nph.15735] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Accepted: 02/03/2019] [Indexed: 05/13/2023]
Abstract
While photosynthetic isotope discrimination is well understood, the postphotosynthetic and transport-related fractionation mechanisms that influence phloem and subsequently tree ring δ13 C are less investigated and may vary among species. We studied the seasonal and diel courses of leaf-to-phloem δ13 C differences of water-soluble organic matter (WSOM) in vertical crown gradients and followed the assimilate transport via the branches to the trunk phloem at breast height in European beech (Fagus sylvatica) and Douglas fir (Pseudotsuga menziesii). δ13 C of individual sugars and cyclitols from a subsample was determined by compound-specific isotope analysis. In beech, leaf-to-phloem δ13 C differences in WSOM increased with height and were partly caused by biochemical isotope fractionation between leaf compounds. 13 C-Enrichment of phloem sugars relative to leaf sucrose implies an additional isotope fractionation mechanism related to leaf assimilate export. In Douglas fir, leaf-to-phloem δ13 C differences were much smaller and isotopically invariant pinitol strongly influenced leaf and phloem WSOM. Trunk phloem WSOM at breast height reflected canopy-integrated δ13 C in beech but not in Douglas fir. Our results demonstrate that leaf-to-phloem isotope fractionation and δ13 C mixing patterns along vertical gradients can differ between tree species. These effects have to be considered for functional interpretations of trunk phloem and tree ring δ13 C.
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Affiliation(s)
- Rebekka Bögelein
- Faculty of Regional and Environmental Sciences - Geobotany, University of Trier, Behringstraße 21, Trier, 54296, Germany
| | - Marco M Lehmann
- Forest Dynamics, Swiss Federal Institute WSL Birmensdorf, Zuercherstrasse 111, Birmensdorf, 8903, Switzerland
| | - Frank M Thomas
- Faculty of Regional and Environmental Sciences - Geobotany, University of Trier, Behringstraße 21, Trier, 54296, Germany
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Salesse K, Kaupová S, Brůžek J, Kuželka V, Velemínský P. An isotopic case study of individuals with syphilis from the pathological-anatomical reference collection of the national museum in Prague (Czech Republic, 19th century A.D.). INTERNATIONAL JOURNAL OF PALEOPATHOLOGY 2019; 25:46-55. [PMID: 31051405 DOI: 10.1016/j.ijpp.2019.04.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Revised: 04/09/2019] [Accepted: 04/10/2019] [Indexed: 06/09/2023]
Abstract
OBJECTIVE This paper aims at investigating the possible existence of isotopic offsets in δ13Ccol and δ15Ncol values in relation to tertiary syphilis. MATERIAL Based on materials from the 19th c. A.D. deriving from the pathological-anatomical reference collection (the Jedlička collection) of the National Museum in Prague (Czech Republic), a comparative approach of ten individuals with syphilis and nine without the disease was undertaken. METHODS Bone powder samples were defatted according to the protocol of Liden et al. (1995). Bone collagen was extracted following the protocol of Bocherens et al. (1991). RESULTS Our results show that individuals with syphilis have lower δ13Ccol values than individuals without the disease; the observed difference between the two groups is about 0.3-0.4‰, which is relatively small but still meaningful. However, no difference between δ15Ncol values of the two groups has been noticed. CONCLUSIONS Either diets prescribed by physicians to syphilitic patients or nutritional stress caused by cyclic appetite disturbance due to the disease itself or the administered medical treatment appeared to be possible explanations of the observed isotopic pattern. Overall, the response of the two isotopic proxies could argue for relatively limited nutritional restrictions. SIGNIFICANCE This is the first study examining bone collagen isotopic response to syphilis based on clinically documented human skeletal materials. LIMITATIONS The sample sizes are relatively small and cautiousness must be taken regarding the interpretations of the data. SUGGESTIONS FOR FURTHER RESEARCH Compound-specific stable isotope investigations and analysis of mercury content could be helpful to better understand the observed isotopic effects.
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Affiliation(s)
- Kevin Salesse
- Research Unit of Anthropology and Human Genetics, Université Libre de Bruxelles, CP192, Avenue F.D. Roosevelt 50, 1050, Brussels, Belgium; UMR 5199: "PACEA, De la Préhistoire à l'Actuel: Culture, Environnement et Anthropologie", Université de Bordeaux, Bâtiment B8, allée Geoff ;roy Saint Hilaire, CS50023, 33615, Pessac cedex, France.
| | - Sylva Kaupová
- Department of Anthropology, National Museum, Václavské námĕstí 68, 11579, Praha 1, Czech Republic
| | - Jaroslav Brůžek
- UMR 5199: "PACEA, De la Préhistoire à l'Actuel: Culture, Environnement et Anthropologie", Université de Bordeaux, Bâtiment B8, allée Geoff ;roy Saint Hilaire, CS50023, 33615, Pessac cedex, France; Department of Anthropology and Human Genetics, Faculty of Science, Charles University, Viničná 7, 12844, Praha 2, Czech Republic
| | - Vítězslav Kuželka
- Department of Anthropology, National Museum, Václavské námĕstí 68, 11579, Praha 1, Czech Republic
| | - Petr Velemínský
- Department of Anthropology, National Museum, Václavské námĕstí 68, 11579, Praha 1, Czech Republic
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Commendador AS, Finney BP, Fuller BT, Tromp M, Dudgeon JV. Multiproxy isotopic analyses of human skeletal material from Rapa Nui: Evaluating the evidence from carbonates, bulk collagen, and amino acids. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2019; 169:714-729. [PMID: 31062347 DOI: 10.1002/ajpa.23851] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Revised: 04/24/2019] [Accepted: 04/25/2019] [Indexed: 11/08/2022]
Abstract
OBJECTIVES Stable isotope ratio analysis of bulk bone collagen dominates research into past diet; however, bone carbonate and compound specific isotope analyses (CSIA) of amino acids provide alternative, yet complementary, lines of evidence toward that same research goal. Together they inform on different aspects of diet, allowing greater certainty in reconstructions. Here we present new data on carbonate isotopes for Rapa Nui and reevaluate prehistoric diet in the context of these new and previously published bulk collagen and CSIA data. MATERIALS AND METHODS We analyzed carbon isotopes in bone carbonate from 28 prehistoric human teeth from Rapa Nui. These represent a subset of material examined previously for carbon and nitrogen isotope ratios in bulk collagen. We then reevaluate prehistoric diet in light of these and other published data. In addition, we analyzed carbon and nitrogen isotope ratios in 28 modern plant specimens from Rapa Nui to better approximate the isotopic value of the terrestrial endmember. RESULTS Bulk data suggest a predominantly terrestrial diet, with the amount of marine sources incorporated varying though time. While previously argued to reveal greater amounts of marine consumption, reanalysis of recently published CSIA data suggests this result may relate to the proportion of carbon assimilated rather than consumed. Utilizing models incorporating concentration dependence for estimating dietary proportions results in much lower estimates of marine consumption, in line with findings of the bulk data. DISCUSSION While these data indicate a larger focus on terrestrial resources, limitations in all forms of analysis make it difficult to determine exact dietary contributions in this mixed system. Better understanding of the complex physiological processes governing isotopic routing and fractionation, and knowledge of appropriate isotopic endmember values are needed to advance this research.
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Affiliation(s)
- Amy S Commendador
- Idaho Museum of Natural History, Idaho State University, Pocatello, Idaho.,Department of Biological Sciences, Idaho State University, Pocatello, Idaho
| | - Bruce P Finney
- Department of Biological Sciences, Idaho State University, Pocatello, Idaho.,Center for Archaeology, Materials and Applied Spectroscopy, Idaho State University, Pocatello, Idaho.,Department of Geosciences, Idaho State University, Pocatello, Idaho
| | - Benjamin T Fuller
- Department of Archaeology and Heritage Studies, School of Culture and Society, Aarhus University, Højbjerg, Denmark
| | - Monica Tromp
- Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany.,Department of Anatomy, University of Otago, Dunedin, New Zealand
| | - John V Dudgeon
- Center for Archaeology, Materials and Applied Spectroscopy, Idaho State University, Pocatello, Idaho
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Barçante Ladvocat Cintra B, Gloor M, Boom A, Schöngart J, Locosselli GM, Brienen R. Contrasting controls on tree ring isotope variation for Amazon floodplain and terra firme trees. TREE PHYSIOLOGY 2019; 39:845-860. [PMID: 30824929 PMCID: PMC6594573 DOI: 10.1093/treephys/tpz009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Revised: 12/10/2018] [Accepted: 01/15/2019] [Indexed: 05/04/2023]
Abstract
Isotopes in tropical trees rings can improve our understanding of tree responses to climate. We assessed how climate and growing conditions affect tree-ring oxygen and carbon isotopes (δ18OTR and δ13CTR) in four Amazon trees. We analysed within-ring isotope variation for two terra firme (non-flooded) and two floodplain trees growing at sites with varying seasonality. We find distinct intra-annual patterns of δ18OTR and δ13CTR driven mostly by seasonal variation in weather and source water δ18O. Seasonal variation in isotopes was lowest for the tree growing under the wettest conditions. Tree ring cellulose isotope models based on existing theory reproduced well observed within-ring variation with possible contributions of both stomatal and mesophyll conductance to variation in δ13CTR. Climate analysis reveal that terra firme δ18OTR signals were related to basin-wide precipitation, indicating a source water δ18O influence, while floodplain trees recorded leaf enrichment effects related to local climate. Thus, intrinsically different processes (source water vs leaf enrichment) affect δ18OTR in the two different species analysed. These differences are likely a result of both species-specific traits and of the contrasting growing conditions in the floodplains and terra firme environments. Simultaneous analysis of δ13CTR and δ18OTR supports this interpretation as it shows strongly similar intra-annual patterns for both isotopes in the floodplain trees arising from a common control by leaf stomatal conductance, while terra firme trees showed less covariation between the two isotopes. Our results are interesting from a plant physiological perspective and have implications for climate reconstructions as trees record intrinsically different processes.
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Affiliation(s)
| | - Manuel Gloor
- School of Geography, University of Leeds, Leeds, Garstang North
| | - Arnoud Boom
- School of Geology, Geography and the Environment, Bennett Building, University Road, University of Leicester, Leicester, UK
| | - Jochen Schöngart
- National Institute for Amazon Research, Av. André Araújo, 2.936, Petrópolis, CEP 69.067-375, Manaus, Amazonas Brazil
| | - Giuliano Maselli Locosselli
- Institute of Biosciences, University of São Paulo, Rua do Matão, 14, Butantã, São Paulo, CEP 05508-090, Brazil
| | - Roel Brienen
- School of Geography, University of Leeds, Leeds, Garstang North
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