What's the flux? Unraveling how CO₂ fluxes from trees reflect underlying physiological processes

From tree to plot: investigating stem CO2 efflux and its drivers along a logging gradient in Sabah, Malaysian Borneo

Stem respiration constitutes a substantial proportion of autotrophic respiration in forested ecosystems, but its drivers across different spatial scales and land-use gradients remain poorly understood. This study quantifies and examines the impact of logging disturbance on stem CO2 efflux (EA) in Malaysian Borneo. EA was quantified at tree- and stand-level in nine 1-ha plots over a logging gradient from heavily logged to old-growth using the static chamber method. Tree-level results showed higher EA per unit stem area in logged vs old-growth plots (37.0 ± 1.1 vs 26.92 ± 1.14 g C m-2 month-1). However, at stand-level, there was no difference in EA between logged and old-growth plots (6.7 ± 1.1 vs 6.0 ± 0.7 Mg C ha-1 yr-1) due to greater stem surface area in old-growth plots. Allocation to growth respiration and carbon use efficiency was significantly higher in logged plots. Variation in EA at both tree- and stand-level was driven by tree size, growth and differences in investment strategies between the forest types. These results reflect different resource allocation strategies and priorities, with a priority for growth in response to increased light availability in logged plots, while old-growth plots prioritise maintenance and cell structure.

The quandary of sources and sinks of CO2 efflux in tree stems-new insights and future directions

Stem respiration (RS) substantially contributes to the return of photo assimilated carbon to the atmosphere and, thus, to the tree and ecosystem carbon balance. Stem CO2 efflux (ECO2) is often used as a proxy for RS. However, this metric has often been challenged because of the uncertain origin of CO2 emitted from the stem due to post-respiratory processes. In this Insight, we (i) describe processes affecting the quantification of RS, (ii) review common methodological approaches to quantify and model RS and (iii) develop a research agenda to fill the most relevant knowledge gaps that we identified. Dissolution, transport and accumulation of respired CO2 away from its production site, reassimilation of respired CO2 via stem photosynthesis and the enzyme phosphoenolpyruvate carboxylase, axial CO2 diffusion in the gas phase, shifts in the respiratory substrate and non-respiratory oxygen (O2) consumption are the most relevant processes causing divergence between RS and measured stem gas exchange (ECO2 or O2 influx, IO2). Two common methodological approaches to estimate RS, namely the CO2 mass balance approach and the O2 consumption technique, circumvent some of these processes but have yielded inconsistent results regarding the fate of respired CO2. Stem respiration modelling has recently progressed at the organ and tree levels. However, its implementation in large-scale models, commonly operated from a source-driven perspective, is unlikely to reflect adequate mechanisms. Finally, we propose hypotheses and approaches to advance the knowledge of the stem carbon balance, the role of sap pH on RS, the reassimilation of respired CO2, RS upscaling procedures, large-scale RS modelling and shifts in respiratory metabolism during environmental stress.

Edge effects on tree architecture exacerbate biomass loss of fragmented Amazonian forests

Habitat fragmentation could potentially affect tree architecture and allometry. Here, we use ground surveys of terrestrial LiDAR in Central Amazonia to explore the influence of forest edge effects on tree architecture and allometry, as well as forest biomass, 40 years after fragmentation. We find that young trees colonising the forest fragments have thicker branches and architectural traits that optimise for light capture, which result in 50% more woody volume than their counterparts of similar stem size and height in the forest interior. However, we observe a disproportionately lower height in some large trees, leading to a 30% decline in their woody volume. Despite the substantial wood production of colonising trees, the lower height of some large trees has resulted in a net loss of 6.0 Mg ha-1 of aboveground biomass - representing 2.3% of the aboveground biomass of edge forests. Our findings indicate a strong influence of edge effects on tree architecture and allometry, and uncover an overlooked factor that likely exacerbates carbon losses in fragmented forests.

Phloem Sap Composition: What Have We Learnt from Metabolomics?

Phloem sap transport is essential for plant nutrition and development since it mediates redistribution of nutrients, metabolites and signaling molecules. However, its biochemical composition is not so well-known because phloem sap sampling is difficult and does not always allow extensive chemical analysis. In the past years, efforts have been devoted to metabolomics analyses of phloem sap using either liquid chromatography or gas chromatography coupled with mass spectrometry. Phloem sap metabolomics is of importance to understand how metabolites can be exchanged between plant organs and how metabolite allocation may impact plant growth and development. Here, we provide an overview of our current knowledge of phloem sap metabolome and physiological information obtained therefrom. Although metabolomics analyses of phloem sap are still not numerous, they show that metabolites present in sap are not just sugars and amino acids but that many more metabolic pathways are represented. They further suggest that metabolite exchange between source and sink organs is a general phenomenon, offering opportunities for metabolic cycles at the whole-plant scale. Such cycles reflect metabolic interdependence of plant organs and shoot-root coordination of plant growth and development.

Toward a general theory of plant carbon economics

Plant life-history variation reflects different outcomes of natural selection given the strictures of resource allocation trade-offs. However, there is limited theory of selection predicting how leaves, stems, roots, and reproductive organs should evolve in concert across environments. Here, we synthesize two optimality theories to offer a general theory of plant carbon economics, named as Gmax theory, that shows how life-history variation is limited to phenotypes that have an approximately similar lifetime net carbon gain per body mass. In consequence, fast-slow economics spectra are the result of trait combinations obtaining similar lifetime net carbon gains from leaves and similar net carbon investment costs in stems, roots, and reproductive organs. Gmax theory also helps explain ecosystem and crop productivity and even helps guide carbon conservation strategies.

Carbon allocation and tree diversity: shifts in autotrophic respiration in tree mixtures compared to monocultures

Mixed species forests are known to have a higher gross primary productivity (GPP) and net primary productivity (NPP) than forests containing only one single tree species. Trees growing in mixtures are characterized by higher autotrophic respiration (Ra), this results in a lower carbon use efficiency of mixed species forests compared to monocultures. The pathway responsible for the high quantities of carbon lost through respiratory pathways is still unclear. Here, we present the only existing measurements evaluating tree mixture effects based on stem CO2 efflux (Estem), scaled to woody respiration (Rw) on stand level. We conducted predawn Estem measurements on five tree species in an experimental tree plantation in Central Panama. Estem was scaled to the entire plot level woody respiration (Rw). Annual Rw was on average 0.25 ± 0.08 Mg C ha− 1 in the monocultures and 0.28 ± 0.10 Mg C ha− 1 in mixed species stands. In mixtures, annual Ra was more than three times higher than in monocultures. As mean Rw was almost constant across the mixture types and Ra varied largely, leads to the conclusion that mixed species plots allocate a higher amount of carbon toward respiratory processes in leaves and roots. This was supported by no significant differences in the mixture effects on the growth respiration relationship.

Mechanistic drivers of stem respiration: A modelling exercise across species and seasons

Stem respiration (R_S ) plays a crucial role in plant carbon budgets. However, its poor understanding limits our ability to model woody tissue and whole-tree respiration. A biophysical model of stem water and carbon fluxes (TReSpire) was calibrated on cedar, maple and oak trees during spring and late summer. For this, stem sap flow, water potential, diameter variation, temperature, CO₂ efflux, allometry and biochemistry were monitored. Shoot photosynthesis (P_N ) and nonstructural carbohydrates (NSC) were additionally measured to evaluate source-sink relations. The highest R_S and stem growth was found in maple and oak during spring, both being seasonally decoupled from P_N and [NSC]. Temperature largely affected maintenance respiration (R_M ) in the short term, but temperature-normalized R_M was highly variable on a seasonal timescale. Overall, most of the respired CO₂ radially diffused to the atmosphere (>87%) while the remainder was transported upward with the transpiration stream. The modelling exercise highlights the sink-driven behaviour of R_S and the significance of overall metabolic activity on nitrogen (N) allocation patterns and N-normalized respiratory costs to capture R_S variability over the long term. These insights should be considered when modelling plant respiration, whose representation is currently biased towards a better understanding of leaf metabolism.

Efflux and assimilation of xylem-transported CO2 in stems and leaves of tree species with different wood anatomy

Determining the fate of CO₂ respired in woody tissues is necessary to understand plant respiratory physiology and to evaluate CO₂ recycling mechanisms. An aqueous ¹³ C-enriched CO₂ solution was infused into the stem of 3-4 m tall trees to estimate efflux and assimilation of xylem-transported CO₂ via cavity ring-down laser spectroscopy and isotope ratio mass spectrometry, respectively. Different tree locations (lower stem, upper stem and leafy shoots) and tissues (xylem, bark and leaves) were monitored in species with tracheid, diffuse- and ring-porous wood anatomy (cedar, maple and oak, respectively). Radial xylem CO₂ diffusivity and xylem [CO₂ ] were lower in cedar relative to maple and oak trees, thereby limiting label diffusion. Part of the labeled ¹³ CO₂ was assimilated in cedar (8.7%) and oak (20.6%) trees, mostly in xylem and bark tissues of the stem, while limited solution uptake in maple trees hindered the detection of label assimilation. Little label reached foliar tissues, suggesting substantial label loss along the stem-branch transition following reductions in the radial diffusive pathway. Differences in respiration rates and radial xylem CO₂ diffusivity (lower in conifer relative to angiosperm species) might reconcile discrepancies in efflux and assimilation of xylem-transported CO₂ so far observed between taxonomic clades.

Low-cost chamber design for simultaneous CO2 and O2 flux measurements between tree stems and the atmosphere

Tree stem CO2 efflux is an important component of ecosystem carbon fluxes and has been the focus of many studies. While CO2 efflux can easily be measured, a growing number of studies have shown that it is not identical with actual in situ respiration. Complementing measurements of CO2 flux with simultaneous measurements of O2 flux provides an additional proxy for respiration, and the combination of both fluxes can potentially help getting closer to actual measures of respiratory fluxes. To date, however, the technical challenge to measure relatively small changes in O2 concentration against its high atmospheric background has prevented routine O2 measurements in field applications. Here, we present a new and low-cost field-tested device for autonomous real-time and quasi-continuous long-term measurements of stem respiration by combining CO2 (NDIR-based) and O2 (quenching-based) sensors in a tree stem chamber. Our device operates as a cyclic-closed system and measures changes in both CO2 and O2 concentration within the chamber over time. The device is battery powered with a >1-week power independence, and data acquisition is conveniently achieved by an internal logger. Results from both field and laboratory tests document that our sensors provide reproducible measurements of CO2 and O2 exchange fluxes under varying environmental conditions.

Limited vertical CO2 transport in stems of mature boreal Pinus sylvestris trees

Several studies have suggested that CO2 transport in the transpiration stream can considerably bias estimates of root and stem respiration in ring-porous and diffuse-porous tree species. Whether this also happens in species with tracheid xylem anatomy and lower sap flow rates, such as conifers, is currently unclear. We infused 13C-labelled solution into the xylem near the base of two 90-year-old Pinus sylvestris L. trees. A custom-built gas exchange system and an online isotopic analyser were used to sample the CO2 efflux and its isotopic composition continuously from four positions along the bole and one upper canopy shoot in each tree. Phloem and needle tissue 13C enrichment was also evaluated at these positions. Most of the 13C label was lost by diffusion within a few metres of the infusion point indicating rapid CO2 loss during vertical xylem transport. No 13C enrichment was detected in the upper bole needle tissues. Furthermore, mass balance calculations showed that c. 97% of the locally respired CO2 diffused radially to the atmosphere. Our results support the notion that xylem CO2 transport is of limited magnitude in conifers. This implies that the concerns that stem transport of CO2 derived from root respiration biases chamber-based estimates of forest carbon cycling may be unwarranted for mature conifer stands.

Frost and drought: Effects of extreme weather events on stem carbon dynamics in a Mediterranean beech forest

The effects of short-term extreme events on tree functioning and physiology are still rather elusive. European beech is one of the most sensitive species to late frost and water shortage. We investigated the intra-annual C dynamics in stems under such conditions. Wood formation and stem CO₂ efflux were monitored in a Mediterranean beech forest for 3 years (2015-2017), including a late frost (2016) and a summer drought (2017). The late frost reduced radial growth and, consequently, the amount of carbon fixed in the stem biomass by 80%. Stem carbon dioxide efflux in 2016 was reduced by 25%, which can be attributed to the reduction of effluxes due to growth respiration. Counter to our expectations, we found no effects of the 2017 summer drought on radial growth and stem carbon efflux. The studied extreme weather events had various effects on tree growth. Even though late spring frost had a strong impact on beech radial growth in the current year, trees fully recovered in the following growing season, indicating high resilience of beech to this stressful event.

Studying in vivo dynamics of xylem-transported 11CO2 using positron emission tomography

Respired CO2 in woody tissues can build up in the xylem and dissolve in the sap solution to be transported through the plant. From the sap, a fraction of the CO2 can either be radially diffuse to the atmosphere or be assimilated in chloroplasts present in woody tissues. These processes occur simultaneously in stems and branches, making it difficult to study their specific dynamics. Therefore, an 11C-enriched aqueous solution was administered to young branches of Populus tremula L., which were subsequently imaged by positron emission tomography (PET). This approach allows in vivo visualization of the internal movement of CO2 inside branches at high spatial and temporal resolution, and enables direct measurement of the transport speed of xylem-transported CO2 (vCO2). Through compartmental modeling of the dynamic data obtained from the PET images, we (i) quantified vCO2 and (ii) proposed a new method to assess the fate of xylem-transported 11CO2 within the branches. It was found that a fraction of 0.49 min-1 of CO2 present in the xylem was transported upwards. A fraction of 0.38 min-1 diffused radially from the sap to the surrounding parenchyma and apoplastic spaces (CO2,PA) to be assimilated by woody tissue photosynthesis. Another 0.12 min-1 of the xylem-transported CO2 diffused to the atmosphere via efflux. The remaining CO2 (i.e., 0.01 min-1) was stored as CO2,PA, representing the build-up within parenchyma and apoplastic spaces to be assimilated or directed to the atmosphere. Here, we demonstrate the outstanding potential of 11CO2-based plant-PET in combination with compartmental modeling to advance our understanding of internal CO2 movement and the respiratory physiology within woody tissues.

Woody tissue photosynthesis reduces stem CO2 efflux by half and remains unaffected by drought stress in young Populus tremula trees

A substantial portion of locally respired CO₂ in stems can be assimilated by chloroplast-containing tissues. Woody tissue photosynthesis (P_wt ) therefore plays a major role in the stem carbon balance. To study the impact of P_wt on stem carbon cycling along a gradient of water availability, stem CO₂ efflux (E_A ), xylem CO₂ concentration ([CO₂ ]), and xylem water potential (Ψ_xylem ) were measured in 4-year-old Populus tremula L. trees exposed to drought stress and different regimes of light exclusion of woody tissues. Under well-watered conditions, local P_wt decreased E_A up to 30%. Axial CO₂ diffusion (D_ax ) induced by distant P_wt caused an additional decrease in E_A of up to 25% and limited xylem [CO₂ ] build-up. Under drought stress, absolute decreases in E_A driven by P_wt remained stable, denoting that P_wt was not affected by drought. At the end of the dry period, when transpiration was low, local P_wt and D_ax offset 20% and 10% of stem respiration on a daily basis, respectively. These results highlight (a) the importance of P_wt for an adequate interpretation of E_A measurements and (b) homeostatic P_wt along a drought stress gradient, which might play a crucial role to fuel stem metabolism when leaf carbon uptake and phloem transport are limited.

TReSpire - a biophysical TRee Stem respiration model

Mechanistic models of plant respiration remain poorly developed, especially in stems and woody tissues where measurements of CO₂ efflux do not necessarily reflect local respiratory activity. We built a process-based model of stem respiration that couples water and carbon fluxes at the organ level (TReSpire). To this end, sap flow, stem diameter variations, xylem and soil water potential, stem temperature, stem CO₂ efflux and nonstructural carbohydrates were measured in a maple tree, while xylem CO₂ concentration and additional stem and xylem diameter variations were monitored in an ancillary tree for model validation. TReSpire realistically described: (1) turgor pressure to differentiate growing from nongrowing metabolism; (2) maintenance expenditures in xylem and outer tissues based on Arrhenius kinetics and nitrogen content; and (3) radial CO₂ diffusivity and CO₂ solubility and transport in the sap solution. Collinearity issues with phloem unloading rates and sugar-starch interconversion rates suggest parallel submodelling to close the stem carbon balance. TReSpire brings a breakthrough in the modelling of stem water and carbon fluxes at a detailed (hourly) temporal resolution. TReSpire is calibrated from a sink-driven perspective, and has potential to advance our understanding on stem growth dynamics, CO₂ fluxes and underlying respiratory physiology across different species and phenological stages.

Elevated CO2 does not affect stem CO2 efflux nor stem respiration in a dry Eucalyptus woodland, but it shifts the vertical gradient in xylem [CO2 ]

To quantify stem respiration (R_S ) under elevated CO₂ (eCO₂ ), stem CO₂ efflux (E_A ) and CO₂ flux through the xylem (F_T ) should be accounted for, because part of respired CO₂ is transported upwards with the sap solution. However, previous studies have used E_A as a proxy of R_S , which could lead to equivocal conclusions. Here, to test the effect of eCO₂ on R_S , both E_A and F_T were measured in a free-air CO₂ enrichment experiment located in a mature Eucalyptus native forest. Drought stress substantially reduced E_A and R_S , which were unaffected by eCO₂ , likely as a consequence of its neutral effect on stem growth in this phosphorus-limited site. However, xylem CO₂ concentration measured near the stem base was higher under eCO₂ , and decreased along the stem resulting in a negative contribution of F_T to R_S , whereas the contribution of F_T to R_S under ambient CO₂ was positive. Negative F_T indicates net efflux of CO₂ respired below the monitored stem segment, likely coming from the roots. Our results highlight the role of nutrient availability on the dependency of R_S on eCO₂ and suggest stimulated root respiration under eCO₂ that may shift vertical gradients in xylem [CO₂ ] confounding the interpretation of E_A measurements.

Isotope ratio laser spectroscopy to disentangle xylem-transported from locally respired CO2 in stem CO2 efflux

Respired CO2 in woody tissues radially diffuses to the atmosphere or it is transported upward with the transpiration stream, making the origin of CO2 in stem CO2 efflux (EA) uncertain, which may confound stem respiration (RS) estimates. An aqueous 13C-enriched solution was infused into stems of Populus tremula L. trees, and real-time measurements of 13C-CO2 and 12C-CO2 in EA were performed via Cavity Ring Down Laser Spectroscopy (CRDS). The contribution of locally respired CO2 (LCO2) and xylem-transported CO2 (TCO2) to EA was estimated from their different isotopic composition. Mean daily values of TCO2/EA ranged from 13% to 38%, evidencing the notable role that xylem CO2 transport plays in the assessment of stem respiration. Mean daily TCO2/EA did not differ between treatments of drought stress and light exclusion of woody tissues, but they showed different TCO2/EA dynamics on a sub-daily time scale. Sub-daily CO2 diffusion patterns were explained by a light-induced axial CO2 gradient ascribed to woody tissue photosynthesis, and the resistance to radial CO2 diffusion determined by bark water content. Here, we demonstrate the outstanding potential of CRDS paired with 13C-CO2 labelling to advance in the understanding of CO2 movement at the plant-atmosphere interface and the respiratory physiology in woody tissues.

Variability of stem CO2 efflux response to temperature over the diel period

This study presents results from continuous measurements of stem CO2 efflux carried out for seven growing seasons in a young Norway spruce forest. The objective of the study was to determine differences in temperature sensitivity of stem CO2 efflux (Q10) during night (when sap flow is zero or nearly zero), during early afternoon (when the maximum rate of sap flow occurs) and during two transition periods between the aforementioned periods. The highest Q10 was recorded during the period of zero sap flow, while the lowest Q10 was observed in period of the highest sap flow. Calculating Q10 using only data from the period of zero sap flow resulted in a Q10 that was higher by as much as 19% compared with Q10 calculated using 24 h data. On the other hand, basing the calculation on data from the period of the highest sap flow yielded 5.6% lower Q10 than if 24 h data were used. Considering that change in CO2 efflux lagged in time behind changing stem temperature, there was only a small effect on calculated Q10 for periods with zero and the highest sap flow. A larger effect of the time lag (by as much as 15%) was observed for the two transition periods. Stem CO2 efflux was modelled based on the night CO2 efflux response to temperature. This model had a tendency to overestimate CO2 efflux during daytime, thus indicating potential daytime depression of stem CO2 efflux compared with the values predicated on the basis of temperature caused by CO2 transport upward in the sap flow. This view was supported by our results inasmuch as the overestimation grew with sap flow that was modelled on the basis of photosynthetically active radiation and vapour pressure deficit.

Living on borrowed time - Amazonian trees use decade-old storage carbon to survive for months after complete stem girdling

Nonstructural carbon (NSC) reserves act as buffers to sustain tree activity during periods when carbon (C) assimilation does not meet C demand, but little is known about their age and accessibility; we designed a controlled girdling experiment in the Amazon to study tree survival on NSC reserves. We used bomb-radiocarbon (¹⁴ C) to monitor the time elapsed between C fixation and release ('age' of substrates). We simultaneously monitored how the mobilization of reserve C affected δ¹³ CO₂ . Six ungirdled control trees relied almost exclusively on recent assimilates throughout the 17 months of measurement. The Δ¹⁴ C of CO₂ emitted from the six girdled stems increased significantly over time after girdling, indicating substantial remobilization of storage NSC fixed up to 13-14 yr previously. This remobilization was not accompanied by a consistent change in observed δ¹³ CO₂ . These trees have access to storage pools integrating C accumulated over more than a decade. Remobilization follows a very clear reverse chronological mobilization with younger reserve pools being mobilized first. The lack of a shift in the δ¹³ CO₂ might indicate a constant contribution of starch hydrolysis to the soluble sugar pool even outside pronounced stress periods (regular mixing).

Linking stem growth respiration to the seasonal course of stem growth and GPP of Scots pine

Current methods to study relations between stem respiration and stem growth have been hampered by problems in quantifying stem growth from dendrometer measurements, particularly on a daily time scale. This is mainly due to the water-related influences within these measurements that mask growth. A previously published model was used to remove water-related influences from measured radial stem variations to reveal a daily radial growth signal (ΔˆGm). We analysed the intra- and inter-annual relations between ΔˆGm and estimated growth respiration rates (Rg) on a daily scale for 5 years. Results showed that Rg was weakly correlated to stem growth prior to tracheid formation, but was significant during the early summer. In the late summer, the correlation decreased slightly relative to the early summer. A 1-day time lag was found of ΔˆGm preceding Rg. Using wavelet analysis and measurements from eddy covariance, it was found that Rg followed gross primary production and temperature with a 2 and 3 h time lag, respectively.This study shows that further in-depth analysis of in-situ growth and growth respiration dynamics is greatly needed, with a focus on cellular respiration at specific developmental stages, its woody tissue costs and linkages to source-sink processes and environmental drivers.

More than just CO2 -recycling: corticular photosynthesis as a mechanism to reduce the risk of an energy crisis induced by low oxygen

Reassimilation of internal CO₂ via corticular photosynthesis (PS_cort ) has an important effect on the carbon economy of trees. However, little is known about its role as a source of O₂ supply to the stem parenchyma and its implications in consumption and movement of O₂ within trees. PS_cort of young Populus nigra (black poplar) trees was investigated by combining optical micro-optode measurements with monitoring of stem chlorophyll fluorescence. During times of zero sap flow in spring, stem oxygen concentrations (cO₂ ) exhibited large temporal changes. In the sapwood, over 80% of diurnal changes in cO₂ could be explained by respiration rates (R_d(mod) ). In the cortex, photosynthetic oxygen release during the day altered this relationship. With daytime illumination, oxygen levels in the cortex steadily increased from subambient and even exhibited a diel period of superoxia of up to 110% (% air sat.). By contrast, in the sapwood, cO₂ never reached ambient levels; the diurnal oxygen deficit was up to 25% of air saturation. Our results confirm that PS_cort is not only a CO₂ -recycling mechanism, it is also a mechanism to actively raise the cortical O₂ concentration and counteract temporal/spatial hypoxia inside plant stems.

Drought stress and tree size determine stem CO2 efflux in a tropical forest

CO₂ efflux from stems (CO_{2_stem} ) accounts for a substantial fraction of tropical forest gross primary productivity, but the climate sensitivity of this flux remains poorly understood. We present a study of tropical forest CO_{2_stem} from 215 trees across wet and dry seasons, at the world's longest running tropical forest drought experiment site. We show a 27% increase in wet season CO_{2_stem} in the droughted forest relative to a control forest. This was driven by increasing CO_{2_stem} in trees 10-40 cm diameter. Furthermore, we show that drought increases the proportion of maintenance to growth respiration in trees > 20 cm diameter, including large increases in maintenance respiration in the largest droughted trees, > 40 cm diameter. However, we found no clear taxonomic influence on CO_{2_stem} and were unable to accurately predict how drought sensitivity altered ecosystem scale CO_{2_stem} , due to substantial uncertainty introduced by contrasting methods previously employed to scale CO_{2_stem} fluxes. Our findings indicate that under future scenarios of elevated drought, increases in CO_{2_stem} may augment carbon losses, weakening or potentially reversing the tropical forest carbon sink. However, due to substantial uncertainties in scaling CO_{2_stem} fluxes, stand-scale future estimates of changes in stem CO₂ emissions remain highly uncertain.

Temporal and spatial patterns of internal and external stem CO2 fluxes in a sub-Mediterranean oak

To accurately estimate stem respiration (R_S), measurements of both carbon dioxide (CO₂) efflux to the atmosphere (E_A) and internal CO₂ flux through xylem (F_T) are needed because xylem sap transports respired CO₂ upward. However, reports of seasonal dynamics of F_T and E_A are scarce and no studies exist in Mediterranean species under drought stress conditions. Internal and external CO₂ fluxes at three stem heights, together with radial stem growth, temperature, sap flow and shoot water potential, were measured in Quercus pyrenaica Willd. in four measurement campaigns during one growing season. Substantial daytime depressions in temperature-normalized E_A were observed throughout the experiment, including prior to budburst, indicating that diel hysteresis between stem temperature and E_A cannot be uniquely ascribed to diversion of CO₂ in the transpiration stream. Low internal [CO₂] (<0.5%) resulted in low contributions of F_T to R_S throughout the growing season, and R_S was mainly explained by E_A (>90%). Internal [CO₂] was found to vary vertically along the stems. Seasonality in resistance to radial CO₂ diffusion was related to shoot water potential. The low internal [CO₂] and F_T observed in our study may result from the downregulation of xylem respiration in response to a legacy of coppicing as well as high radial diffusion of CO₂ through cambium, phloem and bark tissues, which was related to low water content of stems. Long-term studies analyzing temporal and spatial variation in internal and external CO₂ fluxes and their interactions are needed to mechanistically understand and model respiration of woody tissues.

Seasonal and diel variation in xylem CO2 concentration and sap pH in sub-Mediterranean oak stems

Since a substantial portion of respired CO2 remains within the stem, diel and seasonal trends in stem CO2 concentration ([CO2]) are of major interest in plant respiration and carbon budget research. However, continuous long-term stem [CO2] studies are scarce, and generally absent in Mediterranean climates. In this study, stem [CO2] was monitored every 15min together with stem and air temperature, sap flow, and soil water storage during a growing season in 16 stems of Quercus pyrenaica to elucidate the main drivers of stem [CO2] at different temporal scales. Fluctuations in sap pH were also assessed during two growing seasons to evaluate potential errors in estimates of the concentration of CO2 dissolved in xylem sap ([CO2*]) calculated using Henry's law. Stem temperature was the best predictor of stem [CO2] and explained more than 90% and 50% of the variability in stem [CO2] at diel and seasonal scales, respectively. Under dry conditions, soil water storage was the main driver of stem [CO2]. Likewise, the first rains after summer drought caused intense stem [CO2] pulses, suggesting enhanced stem and root respiration and increased resistance to radial CO2 diffusion. Sap flow played a secondary role in controlling stem [CO2] variations. We observed night-time sap pH acidification and progressive seasonal alkalinization. Thus, if the annual mean value of sap pH (measured at midday) was assumed to be constant, night-time sap [CO2*] was substantially overestimated (40%), and spring and autumn sap [CO2*] were misestimated by 25%. This work highlights that diel and seasonal variations in temperature, tree water availability, and sap pH substantially affect xylem [CO2] and sap [CO2*].

Diel growth dynamics in tree stems: linking anatomy and ecophysiology

Impacts of climate on stem growth in trees are studied in anatomical, ecophysiological, and ecological disciplines, but an integrative framework to assess those impacts remains lacking. In this opinion article, we argue that three research efforts are required to provide that integration. First, we need to identify the missing links in diel patterns in stem diameter and stem growth and relate those patterns to the underlying mechanisms that control water and carbon balance. Second, we should focus on the understudied mechanisms responsible for seasonal impacts on such diel patterns. Third, information on stem anatomy and ecophysiology should be integrated in the same experiments and mechanistic plant growth models to capture both diel and seasonal scales.

Impact of mesophyll diffusion on estimated global land CO2 fertilization

In C3 plants, CO2 concentrations drop considerably along mesophyll diffusion pathways from substomatal cavities to chloroplasts where CO2 assimilation occurs. Global carbon cycle models have not explicitly represented this internal drawdown and therefore overestimate CO2 available for carboxylation and underestimate photosynthetic responsiveness to atmospheric CO2. An explicit consideration of mesophyll diffusion increases the modeled cumulative CO2 fertilization effect (CFE) for global gross primary production (GPP) from 915 to 1,057 PgC for the period of 1901-2010. This increase represents a 16% correction, which is large enough to explain the persistent overestimation of growth rates of historical atmospheric CO2 by Earth system models. Without this correction, the CFE for global GPP is underestimated by 0.05 PgC/y/ppm. This finding implies that the contemporary terrestrial biosphere is more CO2 limited than previously thought.

Vertical gradients and seasonal variation in stem CO2 efflux within a Norway spruce stand

Stem CO2 efflux is known to vary seasonally and vertically along tree stems. However, annual tree- and stand-scale efflux estimates are commonly based on measurements made only a few times a year, during daytime and at breast height. In this study, the effect of these simplifying assumptions on annual efflux estimates and their influence on the estimates of the importance of stems in stand-scale carbon cycling are evaluated. In order to assess the strength of seasonal, diurnal and along-stem variability in CO2 efflux, half-hourly measurements were carried out at three heights on three mature Norway spruce (Picea abies (L.) Karst.) trees over a period of 3 years. Making the common assumption of breast height efflux rates being representative of the entire stem was found to result in underestimations of 10-17% in the annual tree-scale CO2 efflux. Upscaling using only daytime measurements from breast height increased the underestimation to 15-20%. Furthermore, the results show that the strength of the vertical gradient varies seasonally, being strongest in the early summer and non-existent during the cool months. The observed seasonality in the vertical CO2 efflux gradient could not be explained by variation in stem temperature, temperature response of the CO2 efflux (Q10), outer-bark permeability, CO2 transport in the xylem or CO2 release from the phloem. However, the estimated CO2 concentration immediately beneath the bark was considerably higher in the upper stem during the main period of diameter growth, coinciding with the strongest vertical efflux gradient. These results suggest that higher growth rates in the upper stem are the main cause for the observed vertical variation in the stem CO2 effluxes. Furthermore, the results indicate that accounting for the vertical efflux variation is essential for assessments of the importance of stems in stand-scale carbon cycling.

Stem girdling affects the quantity of CO2 transported in xylem as well as CO2 efflux from soil

There is recent clear evidence that an important fraction of root-respired CO2 is transported upward in the transpiration stream in tree stems rather than fluxing to the soil. In this study, we aimed to quantify the contribution of root-respired CO2 to both soil CO2 efflux and xylem CO2 transport by manipulating the autotrophic component of belowground respiration. We compared soil CO2 efflux and the flux of root-respired CO2 transported in the transpiration stream in girdled and nongirdled 9-yr-old oak trees (Quercus robur) to assess the impact of a change in the autotrophic component of belowground respiration on both CO2 fluxes. Stem girdling decreased xylem CO2 concentration, indicating that belowground respiration contributes to the aboveground transport of internal CO2 . Girdling also decreased soil CO2 efflux. These results confirmed that root respiration contributes to xylem CO2 transport and that failure to account for this flux results in inaccurate estimates of belowground respiration when efflux-based methods are used. This research adds to the growing body of evidence that efflux-based measurements of belowground respiration underestimate autotrophic contributions.

Age, allocation and availability of nonstructural carbon in mature red maple trees

The allocation of nonstructural carbon (NSC) to growth, metabolism and storage remains poorly understood, but is critical for the prediction of stress tolerance and mortality. We used the radiocarbon ((14) C) 'bomb spike' as a tracer of substrate and age of carbon in stemwood NSC, CO2 emitted by stems, tree ring cellulose and stump sprouts regenerated following harvesting in mature red maple trees. We addressed the following questions: which factors influence the age of stemwood NSC?; to what extent is stored vs new NSC used for metabolism and growth?; and, is older, stored NSC available for use? The mean age of extracted stemwood NSC was 10 yr. More vigorous trees had both larger and younger stemwood NSC pools. NSC used to support metabolism (stem CO2 ) was 1-2 yr old in spring before leaves emerged, but reflected current-year photosynthetic products in late summer. The tree ring cellulose (14) C age was 0.9 yr older than direct ring counts. Stump sprouts were formed from NSC up to 17 yr old. Thus, younger NSC is preferentially used for growth and day-to-day metabolic demands. More recently stored NSC contributes to annual ring growth and metabolism in the dormant season, yet decade-old and older NSC is accessible for regrowth.

Carbon dioxide emitted from live stems of tropical trees is several years old

Storage carbon (C) pools are often assumed to contribute to respiration and growth when assimilation is insufficient to meet the current C demand. However, little is known of the age of stored C and the degree to which it supports respiration in general. We used bomb radiocarbon ((14)C) measurements to determine the mean age of carbon in CO2 emitted from and within stems of three tropical tree species in Peru. Carbon pools fixed >1 year previously contributed to stem CO2 efflux in all trees investigated, in both dry and wet seasons. The average age, i.e., the time elapsed since original fixation of CO2 from the atmosphere by the plant to its loss from the stem, ranged from 0 to 6 years. The average age of CO2 sampled 5-cm deep within the stems ranged from 2 to 6 years for two of the three species, while CO2 in the stem of the third tree species was fixed from 14 to >20 years previously. Given the consistency of (14)C values observed for individuals within each species, it is unlikely that decomposition is the source of the older CO2. Our results are in accordance with other studies that have demonstrated the contribution of storage reserves to the construction of stem wood and root respiration in temperate and boreal forests. We postulate the high (14)C values observed in stem CO2 efflux and stem-internal CO2 result from respiration of storage C pools within the tree. The observed age differences between emitted and stem-internal CO2 indicate an age gradient for sources of CO2 within the tree: CO2 produced in the outer region of the stem is younger, originating from more recent assimilates, whereas the CO2 found deeper within the stem is older, fueled by several-year-old C pools. The CO2 emitted at the stem-atmosphere interface represents a mixture of young and old CO2. These observations were independent of season, even during a time of severe regional drought. Therefore, we postulate that the use of storage C for respiration occurs on a regular basis challenging the assumption that storage pools serve as substrates for respiration only during times of limited assimilation.