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Safavi-Rizi V, Uhlig T, Lutter F, Safavi-Rizi H, Krajinski-Barth F, Sasso S. Reciprocal modulation of responses to nitrate starvation and hypoxia in roots and leaves of Arabidopsis thaliana. PLANT SIGNALING & BEHAVIOR 2024; 19:2300228. [PMID: 38165809 PMCID: PMC10763642 DOI: 10.1080/15592324.2023.2300228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Accepted: 12/23/2023] [Indexed: 01/04/2024]
Abstract
The flooding of agricultural land leads to hypoxia and nitrate leaching. While understanding the plant's response to these conditions is essential for crop improvement, the effect of extended nitrate limitation on subsequent hypoxia has not been studied in an organ-specific manner. We cultivated Arabidopsis thaliana without nitrate for 1 week before inducing hypoxia by bubbling the hydroponic solution with nitrogen gas for 16 h. In the roots, the transcripts of two transcription factor genes (HRA1, HRE2) and three genes involved in fermentation (SUS4, PDC1, ADH1) were ~10- to 100-fold upregulated by simultaneous hypoxia and nitrate starvation compared to the control condition (replete nitrate and oxygen). In contrast, this hypoxic upregulation was ~5 to 10 times stronger when nitrate was available. The phytoglobin genes PGB1 and PGB2, involved in nitric oxide (NO) scavenging, were massively downregulated by nitrate starvation (~1000-fold and 105-fold, respectively), but only under ambient oxygen levels; this was reflected in a 2.5-fold increase in NO concentration. In the leaves, HRA1, SUS4, and RAP2.3 were upregulated ~20-fold by hypoxia under nitrate starvation, whereas this upregulation was virtually absent in the presence of nitrate. Our results highlight that the plant's responses to nitrate starvation and hypoxia can influence each other.
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Affiliation(s)
- Vajiheh Safavi-Rizi
- Institute of Biology, Department of Plant Physiology, Leipzig University, Leipzig, Germany
- Institute of Biology, Department of General and Applied Botany, Leipzig University, Leipzig, Germany
| | - Tina Uhlig
- Institute of Biology, Department of Plant Physiology, Leipzig University, Leipzig, Germany
| | - Felix Lutter
- Institute of Biology, Department of General and Applied Botany, Leipzig University, Leipzig, Germany
| | - Hamid Safavi-Rizi
- Department of Information Technology Engineering, Institute of Information Technology and Computer Engineering, University of Payame Noor, Isfahan, Iran
| | - Franziska Krajinski-Barth
- Institute of Biology, Department of General and Applied Botany, Leipzig University, Leipzig, Germany
| | - Severin Sasso
- Institute of Biology, Department of Plant Physiology, Leipzig University, Leipzig, Germany
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Maciag T, Kozieł E, Otulak-Kozieł K, Jafra S, Czajkowski R. Looking for Resistance to Soft Rot Disease of Potatoes Facing Environmental Hypoxia. Int J Mol Sci 2024; 25:3757. [PMID: 38612570 PMCID: PMC11011919 DOI: 10.3390/ijms25073757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 03/21/2024] [Accepted: 03/26/2024] [Indexed: 04/14/2024] Open
Abstract
Plants are exposed to various stressors, including pathogens, requiring specific environmental conditions to provoke/induce plant disease. This phenomenon is called the "disease triangle" and is directly connected with a particular plant-pathogen interaction. Only a virulent pathogen interacting with a susceptible plant cultivar will lead to disease under specific environmental conditions. This may seem difficult to accomplish, but soft rot Pectobacteriaceae (SRPs) is a group virulent of pathogenic bacteria with a broad host range. Additionally, waterlogging (and, resulting from it, hypoxia), which is becoming a frequent problem in farming, is a favoring condition for this group of pathogens. Waterlogging by itself is an important source of abiotic stress for plants due to lowered gas exchange. Therefore, plants have evolved an ethylene-based system for hypoxia sensing. Plant response is coordinated by hormonal changes which induce metabolic and physiological adjustment to the environmental conditions. Wetland species such as rice (Oryza sativa L.), and bittersweet nightshade (Solanum dulcamara L.) have developed adaptations enabling them to withstand prolonged periods of decreased oxygen availability. On the other hand, potato (Solanum tuberosum L.), although able to sense and response to hypoxia, is sensitive to this environmental stress. This situation is exploited by SRPs which in response to hypoxia induce the production of virulence factors with the use of cyclic diguanylate (c-di-GMP). Potato tubers in turn reduce their defenses to preserve energy to prevent the negative effects of reactive oxygen species and acidification, making them prone to soft rot disease. To reduce the losses caused by the soft rot disease we need sensitive and reliable methods for the detection of the pathogens, to isolate infected plant material. However, due to the high prevalence of SRPs in the environment, we also need to create new potato varieties more resistant to the disease. To reach that goal, we can look to wild potatoes and other Solanum species for mechanisms of resistance to waterlogging. Potato resistance can also be aided by beneficial microorganisms which can induce the plant's natural defenses to bacterial infections but also waterlogging. However, most of the known plant-beneficial microorganisms suffer from hypoxia and can be outcompeted by plant pathogens. Therefore, it is important to look for microorganisms that can withstand hypoxia or alleviate its effects on the plant, e.g., by improving soil structure. Therefore, this review aims to present crucial elements of potato response to hypoxia and SRP infection and future outlooks for the prevention of soft rot disease considering the influence of environmental conditions.
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Affiliation(s)
- Tomasz Maciag
- Department of Botany, Institute of Biology, Warsaw University of Life Sciences—SGGW, Nowoursynowska Street 159, 02-776 Warsaw, Poland;
| | - Edmund Kozieł
- Department of Botany, Institute of Biology, Warsaw University of Life Sciences—SGGW, Nowoursynowska Street 159, 02-776 Warsaw, Poland;
| | - Katarzyna Otulak-Kozieł
- Department of Botany, Institute of Biology, Warsaw University of Life Sciences—SGGW, Nowoursynowska Street 159, 02-776 Warsaw, Poland;
| | - Sylwia Jafra
- Laboratory of Plant Microbiology, Intercollegiate Faculty of Biotechnology UG and MUG, University of Gdansk, Antoniego Abrahama Street 58, 80-307 Gdansk, Poland;
| | - Robert Czajkowski
- Laboratory of Biologically Active Compounds, Intercollegiate Faculty of Biotechnology UG and MUG, University of Gdansk, Antoniego Abrahama Street 58, 80-307 Gdansk, Poland;
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Liang H, Yang L, He X, Wu Q, Chen D, Liu M, Shen P. Rhizosphere Ventilation Effects on Root Development and Bacterial Diversity of Peanut in Compacted Soil. PLANTS (BASEL, SWITZERLAND) 2024; 13:790. [PMID: 38592790 PMCID: PMC10975058 DOI: 10.3390/plants13060790] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Revised: 02/22/2024] [Accepted: 03/07/2024] [Indexed: 04/11/2024]
Abstract
Soil compaction is one of the crucial factors that restrains the root respiration, energy metabolism and growth of peanut (Arachis hypogaea L.) due to hypoxia, which can be alleviated by ventilation. We therefore carried out a pot experiment with three treatments: no ventilation control (CK), (2) ventilation volumes at 1.2 (T1), and 1.5 (T2) times of the standard ventilation volume (2.02 L/pot). Compared to no-ventilation in compacted soil, ventilation T1 significantly increased total root length, root surface area, root volume and tips at the peanut anthesis stage (62 days after sowing), while T2 showed a negative impact on the above-mentioned root morphological characteristics. At the podding stage (S2, 95 days after sowing), both ventilation treatments improved root morphology, especially under T1. Compared to CK, both ventilation T1 and T2 decreased the activities of enzymes involving the anaerobic respiration, including root lactate dehydrogenase, pyruvate decarboxylase and alcohol dehydrogenase. The activities of antioxidant enzymes of root superoxide dismutase, peroxidase and catalase also decreased at S1, while superoxide dismutase and peroxidase significantly increased under T1 at S2. The ventilation of compacted soil changed soil nitrogen-fixing bacterial communities, with highest bacterial alpha diversity indices under T1. The Pearson correlation analyses indicated a positive relationship between the relative abundance of Bradyrhizobiaceae and root activity, and between unclassified_family of Rhizobiales and the root surface area, while Enterobacteriaceae had a negative impact on the root nodule number. The Pearson correlation test showed that the root surface, tips and activity positively correlated with root superoxide dismutase and peroxidase activities. These results demonstrate that soil ventilation could enhance plant root growth, the diversity and function of soil nitrogen-fixing bacterial communities. The generated results from this present study could serve as important evidence in alleviating soil hypoxia caused by compaction.
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Affiliation(s)
- Haiyan Liang
- Shandong Peanut Research Institute/Key Laboratory of Peanut Biology, Genetics & Breeding, Ministry of Agriculture and Rural Affairs, Shandong Academy of Agricultural Sciences, Qingdao 266100, China; (H.L.); (L.Y.); (Q.W.); (D.C.); (M.L.)
| | - Liyu Yang
- Shandong Peanut Research Institute/Key Laboratory of Peanut Biology, Genetics & Breeding, Ministry of Agriculture and Rural Affairs, Shandong Academy of Agricultural Sciences, Qingdao 266100, China; (H.L.); (L.Y.); (Q.W.); (D.C.); (M.L.)
| | - Xinhua He
- School of Biological Sciences, University of Western Australia, Perth 6009, Australia;
- Department of Land, Air and Water Resources, University of California at Davis, Davis, CA 90616, USA
| | - Qi Wu
- Shandong Peanut Research Institute/Key Laboratory of Peanut Biology, Genetics & Breeding, Ministry of Agriculture and Rural Affairs, Shandong Academy of Agricultural Sciences, Qingdao 266100, China; (H.L.); (L.Y.); (Q.W.); (D.C.); (M.L.)
| | - Dianxu Chen
- Shandong Peanut Research Institute/Key Laboratory of Peanut Biology, Genetics & Breeding, Ministry of Agriculture and Rural Affairs, Shandong Academy of Agricultural Sciences, Qingdao 266100, China; (H.L.); (L.Y.); (Q.W.); (D.C.); (M.L.)
| | - Miao Liu
- Shandong Peanut Research Institute/Key Laboratory of Peanut Biology, Genetics & Breeding, Ministry of Agriculture and Rural Affairs, Shandong Academy of Agricultural Sciences, Qingdao 266100, China; (H.L.); (L.Y.); (Q.W.); (D.C.); (M.L.)
| | - Pu Shen
- Shandong Peanut Research Institute/Key Laboratory of Peanut Biology, Genetics & Breeding, Ministry of Agriculture and Rural Affairs, Shandong Academy of Agricultural Sciences, Qingdao 266100, China; (H.L.); (L.Y.); (Q.W.); (D.C.); (M.L.)
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Mahomud MS, Islam MN, Roy J. Effect of low oxygen stress on the metabolic responses of tomato fruit cells. Heliyon 2024; 10:e24566. [PMID: 38327398 PMCID: PMC10847614 DOI: 10.1016/j.heliyon.2024.e24566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2023] [Revised: 12/17/2023] [Accepted: 01/10/2024] [Indexed: 02/09/2024] Open
Abstract
Postharvest losses of fruits and vegetables can occur due to cell breakdown and browning during controlled atmosphere storage as a result of low oxygen (O2) stress. Therefore, the study was designed to better understand the underlying mechanisms of the response of isolated tomato fruit cells incubated at low O2 (hypoxic and anoxic) conditions as a model system. The O2 stress conditions used for the experiment were based on the results of the Michaelis-Menten constant (Km) of respiration. A total of 56 polar metabolites belonging mainly to different functional groups, including amino acids, organic acids, sugars and sugar alcohols, were identified using GC-MS. O2 stress stimulated the biosynthesis of most of the free amino acids while decreasing the synthesis of most of the organic acids (especially those linked to the tricarboxylic acid cycle), sugars (except for ribose) and other nitrogen-containing compounds. The down-regulation of these TCA cycle metabolites served to provide energy to ensure the survival of the cell. Increases in the sugar alcohol levels and induction of fermentative metabolism were observed under low O2 stress. By employing multivariate statistics, metabolites were identified that were essential to the oxygen stress response and establishing the correlation between metabolite abundance, oxygen levels, and incubation period were achievable. A higher correlation was observed between the O2 levels and most of the metabolites.
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Affiliation(s)
- Md. Sultan Mahomud
- Department of Food Engineering and Technology, Hajee Mohammad Danesh Science and Technology University, Dinajpur, 5200, Bangladesh
| | - Md. Nahidul Islam
- Department of Agro-Processing, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur, 1706, Bangladesh
- Institute of Food Safety and Processing, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur, 1706, Bangladesh
| | - Joysree Roy
- Department of Food Engineering and Technology, Hajee Mohammad Danesh Science and Technology University, Dinajpur, 5200, Bangladesh
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Kato-Noguchi H, Kurniadie D. The Invasive Mechanisms of the Noxious Alien Plant Species Bidens pilosa. PLANTS (BASEL, SWITZERLAND) 2024; 13:356. [PMID: 38337889 PMCID: PMC10857670 DOI: 10.3390/plants13030356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 01/12/2024] [Accepted: 01/12/2024] [Indexed: 02/12/2024]
Abstract
Bidens pilosa L. is native to tropical America and has widely naturized from tropical to warm temperate regions in Europe, Africa, Asia, Australia, and North and South America. The species has infested a wide range of habitats such as grasslands, forests, wetlands, streamlines, coastal areas, pasture, plantations, agricultural fields, roadsides, and railway sides and has become a noxious invasive weed species. B. pilosa forms thick monospecific stands, quickly expands, and threatens the indigenous plant species and crop production. It is also involved in pathogen transmission as a vector. The species was reported to have (1) a high growth ability, producing several generations in a year; (2) a high achene production rate; (3) different biotypes of cypselae, differently germinating given the time and condition; (4) a high adaptative ability to various environmental conditions; (5) an ability to alter the microbial community, including mutualism with arbuscular mycorrhizal fungi; and (6) defense functions against natural enemies and allelopathy. The species produces several potential allelochemicals such as palmitic acid, p-coumaric acid, caffeic acid, ferulic acid, p-hydroxybenzoic acid, vanillic acid, salycilic acid, quercetin, α-pinene, and limonene and compounds involved in the defense functions such as 1-phenylhepta-1,3,5-trine, 5-phenyl-2-(1-propynyl)-thiophene, 5-actoxy-2-phenylethinyl-thiophene, and icthyothereol acetate. These characteristics of B. pilosa may contribute to the naturalization and invasiveness of the species in the introduced ranges. This is the first review article focusing on the invasive mechanisms of the species.
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Affiliation(s)
- Hisashi Kato-Noguchi
- Department of Applied Biological Science, Faculty of Agriculture, Kagawa University, Miki, Kagawa 761-0795, Japan
| | - Denny Kurniadie
- Department of Agronomy, Faculty of Agriculture, Universitas Padjadjaran, Jalan Raya Bandung Sumedang Km 21, Jatinangor, Sumedang 45363, Jawa Barat, Indonesia
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6
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Daniel K, Hartman S. How plant roots respond to waterlogging. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:511-525. [PMID: 37610936 DOI: 10.1093/jxb/erad332] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Accepted: 08/19/2023] [Indexed: 08/25/2023]
Abstract
Plant submergence is a major abiotic stress that impairs plant performance. Under water, reduced gas diffusion exposes submerged plant cells to an environment that is enriched in gaseous ethylene and is limited in oxygen (O2) availability (hypoxia). The capacity for plant roots to avoid and/or sustain critical hypoxia damage is essential for plants to survive waterlogging. Plants use spatiotemporal ethylene and O2 dynamics as instrumental flooding signals to modulate potential adaptive root growth and hypoxia stress acclimation responses. However, how non-adapted plant species modulate root growth behaviour during actual waterlogged conditions to overcome flooding stress has hardly been investigated. Here we discuss how changes in the root growth rate, lateral root formation, density, and growth angle of non-flood adapted plant species (mainly Arabidopsis) could contribute to avoiding and enduring critical hypoxic conditions. In addition, we discuss current molecular understanding of how ethylene and hypoxia signalling control these adaptive root growth responses. We propose that future research would benefit from less artificial experimental designs to better understand how plant roots respond to and survive waterlogging. This acquired knowledge would be instrumental to guide targeted breeding of flood-tolerant crops with more resilient root systems.
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Affiliation(s)
- Kevin Daniel
- Plant Environmental Signalling and Development, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany
- CIBSS-Centre for Integrative Biological Signalling Studies, University of Freiburg, D-79104 Freiburg, Germany
| | - Sjon Hartman
- Plant Environmental Signalling and Development, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany
- CIBSS-Centre for Integrative Biological Signalling Studies, University of Freiburg, D-79104 Freiburg, Germany
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7
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Cho YB, Boyd RA, Ren Y, Lee MS, Jones SI, Ruiz-Vera UM, McGrath JM, Masters MD, Ort DR. Reducing chlorophyll levels in seed-filling stages results in higher seed nitrogen without impacting canopy carbon assimilation. PLANT, CELL & ENVIRONMENT 2024; 47:278-293. [PMID: 37828764 DOI: 10.1111/pce.14737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 09/28/2023] [Accepted: 10/04/2023] [Indexed: 10/14/2023]
Abstract
Chlorophyll is the major light-absorbing pigment for plant photosynthesis. While evolution has been selected for high chlorophyll content in leaves, previous work suggests that domesticated crops grown in modern high-density agricultural environments overinvest in chlorophyll production, thereby lowering light use and nitrogen use efficiency. To investigate the potential benefits of reducing chlorophyll levels, we created ethanol-inducible RNAi tobacco mutants that suppress Mg-chelatase subunit I (CHLI) with small RNA within 3 h of induction and reduce chlorophyll within 5 days in field conditions. We initiated chlorophyll reduction later in plant development to avoid the highly sensitive seedling stage and to allow young plants to have full green leaves to maximise light interception before canopy formation. This study demonstrated that leaf chlorophyll reduction >60% during seed-filling stages increased tobacco seed nitrogen concentration by as much as 17% while canopy photosynthesis, biomass and seed yields were maintained. These results indicate that time-specific reduction of chlorophyll could be a novel strategy that decouples the inverse relationship between yield and seed nitrogen by utilising saved nitrogen from the reduction of chlorophyll while maintaining full carbon assimilation capacity.
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Affiliation(s)
- Young B Cho
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
| | - Ryan A Boyd
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
| | - Yudong Ren
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
| | - Moon-Sub Lee
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
| | - Sarah I Jones
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
| | - Ursula M Ruiz-Vera
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
| | - Justin M McGrath
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
| | - Michael D Masters
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
| | - Donald R Ort
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
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8
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Li Q, Fu H, Yu X, Wen X, Guo H, Guo Y, Li J. The SALT OVERLY SENSITIVE 2-CONSTITUTIVE TRIPLE RESPONSE1 module coordinates plant growth and salt tolerance in Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:391-404. [PMID: 37721807 DOI: 10.1093/jxb/erad368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Accepted: 09/15/2023] [Indexed: 09/20/2023]
Abstract
High salinity stress promotes plant ethylene biosynthesis and triggers the ethylene signalling response. However, the precise mechanism underlying how plants transduce ethylene signalling in response to salt stress remains largely unknown. In this study, we discovered that SALT OVERLY SENSITIVE 2 (SOS2) inhibits the kinase activity of CONSTITUTIVE TRIPLE RESPONSE1 (CTR1) by phosphorylating the 87th serine (S87). This phosphorylation event activates the ethylene signalling response, leading to enhanced plant salt resistance. Furthermore, through genetic analysis, we determined that the loss of CTR1 or the gain of SOS2-mediated CTR1 phosphorylation both contribute to improved plant salt tolerance. Additionally, in the sos2 mutant, we observed compromised proteolytic processing of ETHYLENE INSENSITIVE 2 (EIN2) and reduced nuclear localization of EIN2 C-terminal fragments (EIN2-C), which correlate with decreased accumulation of ETHYLENE INSENSITIVE 3 (EIN3). Collectively, our findings unveil the role of the SOS2-CTR1 regulatory module in promoting the activation of the ethylene signalling pathway and enhancing plant salt tolerance.
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Affiliation(s)
- Qinpei Li
- State Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing 100193, China
| | - Haiqi Fu
- State Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing 100193, China
| | - Xiang Yu
- State Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing 100193, China
| | - Xing Wen
- Institute of Plant and Food Science, Department of Biology, Southern University of Science and Technology, Shenzhen 518055, China
| | - Hongwei Guo
- Institute of Plant and Food Science, Department of Biology, Southern University of Science and Technology, Shenzhen 518055, China
| | - Yan Guo
- State Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing 100193, China
| | - Jingrui Li
- State Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing 100193, China
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9
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Yang H, Wei Z, Wu Y, Zhang C, Lyu L, Wu W, Li W. Transcriptomic and Metabolomic Profiling Reveals the Variations in Carbohydrate Metabolism between Two Blueberry Cultivars. Int J Mol Sci 2023; 25:293. [PMID: 38203463 PMCID: PMC10778917 DOI: 10.3390/ijms25010293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 12/21/2023] [Accepted: 12/22/2023] [Indexed: 01/12/2024] Open
Abstract
Blueberry is a high-quality fruit tree with significant nutritional and economic value, but the intricate mechanism of sugar accumulation in its fruit remains unclear. In this study, the ripe fruits of blueberry cultivars 'Anna' and 'Misty' were utilized as experimental materials, and physiological and multi-omics methodologies were applied to analyze the regulatory mechanisms of the difference in sugar content between them. The results demonstrated that the 'Anna' fruit was smaller and had less hardness than the 'Misty' fruit, as well as higher sugar content, antioxidant capability, and lower active substance content. A total of 7067 differentially expressed genes (DEGs) (3674 up-regulated and 3393 down-regulated) and 140 differentially abundant metabolites (DAMs) (82 up-regulated and 58 down-regulated) were identified between the fruits of the two cultivars. According to KEGG analysis, DEGs were primarily abundant in phenylpropanoid synthesis and hormone signal transduction pathways, whereas DAMs were primarily enriched in ascorbate and aldarate metabolism, phenylpropanoid biosynthesis, and the pentose phosphate pathway. A combined multi-omics study showed that 116 DEGs and 3 DAMs in starch and sucrose metabolism (48 DEGs and 1 DAM), glycolysis and gluconeogenesis (54 DEGs and 1 DAM), and the pentose phosphate pathway (14 DEGs and 1 DAM) were significantly enriched. These findings suggest that blueberries predominantly increase sugar accumulation by activating carbon metabolism network pathways. Moreover, we identified critical transcription factors linked to the sugar response. This study presents new understandings regarding the molecular mechanisms underlying blueberry sugar accumulation and will be helpful in improving blueberry fruit quality through breeding.
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Affiliation(s)
- Haiyan Yang
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing 210014, China; (H.Y.); (Y.W.); (C.Z.); (L.L.)
| | - Zhiwen Wei
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China;
| | - Yaqiong Wu
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing 210014, China; (H.Y.); (Y.W.); (C.Z.); (L.L.)
| | - Chunhong Zhang
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing 210014, China; (H.Y.); (Y.W.); (C.Z.); (L.L.)
| | - Lianfei Lyu
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing 210014, China; (H.Y.); (Y.W.); (C.Z.); (L.L.)
| | - Wenlong Wu
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen), Nanjing 210014, China; (H.Y.); (Y.W.); (C.Z.); (L.L.)
| | - Weilin Li
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China;
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Tamaru S, Goto K, Sakagami JI. Spatial O 2 Profile in Coix lacryma-jobi and Sorghum bicolor along the Gas Diffusion Pathway under Waterlogging Conditions. PLANTS (BASEL, SWITZERLAND) 2023; 13:3. [PMID: 38202311 PMCID: PMC10780499 DOI: 10.3390/plants13010003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 12/13/2023] [Accepted: 12/16/2023] [Indexed: 01/12/2024]
Abstract
While internal aeration in plants is critical for adaptation to waterlogging, there is a gap in understanding the differences in oxygen diffusion gradients from shoots to roots between hypoxia-tolerant and -sensitive species. This study aims to elucidate the differences in tissue oxygen concentration at various locations on the shoot and root between a hypoxia-tolerant species and a -sensitive species using a microneedle sensor that allows for spatial oxygen profiling. Job's tears, a hypoxia-tolerant species, and sorghum, a hypoxia-susceptible species, were tested. Plants aged 10 days were acclimated to a hypoxic agar solution for 12 days. Oxygen was profiled near the root tip, root base, root shoot junction, stem, and leaf. An anatomical analysis was also performed on the roots used for the O2 profile. The oxygen partial pressure (pO2) values at the root base and tip of sorghum were significantly lower than that of the root of Job's tears. At the base of the root of Job's tears, pO2 rapidly decreased from the root cortex to the surface, indicating a function to inhibit oxygen leakage. No significant differences in pO2 between the species were identified in the shoot part. The root cortex to stele ratio was significantly higher from the root tip to the base in Job's tears compared to sorghum. The pO2 gradient began to differ greatly at the root shoot junction and root base longitudinally, and between the cortex and stele radially, between Job's tears and sorghum. Differences in the root oxygen retention capacity and the cortex to stele ratio are considered to be related to differences in pO2.
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Affiliation(s)
- Shotaro Tamaru
- The United Graduate School of Agricultural Sciences, Kagoshima University, Kagoshima City 890-0065, Japan; (S.T.)
| | - Keita Goto
- The United Graduate School of Agricultural Sciences, Kagoshima University, Kagoshima City 890-0065, Japan; (S.T.)
| | - Jun-Ichi Sakagami
- The United Graduate School of Agricultural Sciences, Kagoshima University, Kagoshima City 890-0065, Japan; (S.T.)
- Faculty of Agriculture, Kagoshima University, Kagoshima City 890-0065, Japan
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11
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Yemelyanov VV, Puzanskiy RK, Shishova MF. Plant Life with and without Oxygen: A Metabolomics Approach. Int J Mol Sci 2023; 24:16222. [PMID: 38003412 PMCID: PMC10671363 DOI: 10.3390/ijms242216222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 11/09/2023] [Accepted: 11/10/2023] [Indexed: 11/26/2023] Open
Abstract
Oxygen deficiency is an environmental challenge which affects plant growth, the development and distribution in land and aquatic ecosystems, as well as crop yield losses worldwide. The capacity to exist in the conditions of deficiency or the complete lack of oxygen depends on a number of anatomic, developmental and molecular adaptations. The lack of molecular oxygen leads to an inhibition of aerobic respiration, which causes energy starvation and the acceleration of glycolysis passing into fermentations. We focus on systemic metabolic alterations revealed with the different approaches of metabolomics. Oxygen deprivation stimulates the accumulation of glucose, pyruvate and lactate, indicating the acceleration of the sugar metabolism, glycolysis and lactic fermentation, respectively. Among the Krebs-cycle metabolites, only the succinate level increases. Amino acids related to glycolysis, including the phosphoglycerate family (Ser and Gly), shikimate family (Phe, Tyr and Trp) and pyruvate family (Ala, Leu and Val), are greatly elevated. Members of the Asp family (Asn, Lys, Met, Thr and Ile), as well as the Glu family (Glu, Pro, Arg and GABA), accumulate as well. These metabolites are important members of the metabolic signature of oxygen deficiency in plants, linking glycolysis with an altered Krebs cycle and allowing alternative pathways of NAD(P)H reoxidation to avoid the excessive accumulation of toxic fermentation products (lactate, acetaldehyde, ethanol). Reoxygenation induces the downregulation of the levels of major anaerobically induced metabolites, including lactate, succinate and amino acids, especially members of the pyruvate family (Ala, Leu and Val), Tyr and Glu family (GABA and Glu) and Asp family (Asn, Met, Thr and Ile). The metabolic profiles during native and environmental hypoxia are rather similar, consisting in the accumulation of fermentation products, succinate, fumarate and amino acids, particularly Ala, Gly and GABA. The most intriguing fact is that metabolic alterations during oxidative stress are very much similar, with plant response to oxygen deprivation but not to reoxygenation.
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Affiliation(s)
- Vladislav V. Yemelyanov
- Department of Genetics and Biotechnology, Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia
| | - Roman K. Puzanskiy
- Department of Plant Physiology and Biochemistry, Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia; (R.K.P.); (M.F.S.)
- Laboratory of Analytical Phytochemistry, Komarov Botanical Institute of the Russian Academy of Sciences, 197376 St. Petersburg, Russia
| | - Maria F. Shishova
- Department of Plant Physiology and Biochemistry, Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia; (R.K.P.); (M.F.S.)
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12
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Chen YN, Ho CH. CIPK15-mediated inhibition of NH 4+ transport protects Arabidopsis from submergence. Heliyon 2023; 9:e20235. [PMID: 37810036 PMCID: PMC10560025 DOI: 10.1016/j.heliyon.2023.e20235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2023] [Revised: 07/18/2023] [Accepted: 09/14/2023] [Indexed: 10/10/2023] Open
Abstract
Ammonium (NH4+) serves as a vital nitrogen source for plants, but it can turn toxic when it accumulates in excessive amounts. Toxicity is aggravated under hypoxic/anaerobic conditions, e.g., during flooding or submergence, due to a lower assimilation capacity. AMT1; 1 mediates NH4+ uptake into roots. Under conditions of oxygen-deficiency, i.e., submergence, the CBL-interacting protein kinase OsCIPK15 has been shown to trigger SnRK1A signaling, promoting starch mobilization, thereby the increasing availability of ATP, reduction equivalents and acceptors for NH4+ assimilation in rice. Our previous study in Arabidopsis demonstrates that AtCIPK15 phosphorylates AMT1; 1 whose activity is under allosteric feedback control by phosphorylation of T460 in the cytosolic C-terminus. Here we show that submergence cause higher NH4+ accumulation in wild-type, plant but not of nitrate, nor in a quadruple amt knock-out mutant. In addition, submergence triggers rapid accumulation of AtAMT1;1 and AtCIPK15 transcripts as well as AMT1 phosphorylation. Significantly, cipk15 knock-out mutants do not exhibit an increase in AMT1 phosphorylation; however, they do display heightened sensitivity to submergence. These findings suggest that CIPK15 suppresses AMT activity, resulting in decreased NH4+ accumulation during submergence, a period when NH4+ assimilation capacity may be impaired.
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Affiliation(s)
- Yen-Ning Chen
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, 115, Taiwan
| | - Cheng-Hsun Ho
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, 115, Taiwan
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13
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Gain G, Berne N, Feller T, Godaux D, Cenci U, Cardol P. Induction of photosynthesis under anoxic condition in Thalassiosira pseudonana and Euglena gracilis: interactions between fermentation and photosynthesis. FRONTIERS IN PLANT SCIENCE 2023; 14:1186926. [PMID: 37560033 PMCID: PMC10407231 DOI: 10.3389/fpls.2023.1186926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Accepted: 06/28/2023] [Indexed: 08/11/2023]
Abstract
INTRODUCTION In their natural environment, microalgae can be transiently exposed to hypoxic or anoxic environments. Whereas fermentative pathways and their interactions with photosynthesis are relatively well characterized in the green alga model Chlamydomonas reinhardtii, little information is available in other groups of photosynthetic micro-eukaryotes. In C. reinhardtii cyclic electron flow (CEF) around photosystem (PS) I, and light-dependent oxygen-sensitive hydrogenase activity both contribute to restoring photosynthetic linear electron flow (LEF) in anoxic conditions. METHODS Here we analyzed photosynthetic electron transfer after incubation in dark anoxic conditions (up to 24 h) in two secondary microalgae: the marine diatom Thalassiosira pseudonana and the excavate Euglena gracilis. RESULTS Both species showed sustained abilities to prevent over-reduction of photosynthetic electron carriers and to restore LEF. A high and transient CEF around PSI was also observed specifically in anoxic conditions at light onset in both species. In contrast, at variance with C. reinhardtii, no sustained hydrogenase activity was detected in anoxic conditions in both species. DISCUSSION Altogether our results suggest that another fermentative pathway might contribute, along with CEF around PSI, to restore photosynthetic activity in anoxic conditions in E. gracilis and T. pseudonana. We discuss the possible implication of the dissimilatory nitrate reduction to ammonium (DNRA) in T. pseudonana and the wax ester fermentation in E. gracilis.
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Affiliation(s)
- Gwenaëlle Gain
- InBioS – PhytoSYSTEMS, Laboratoire de Génétique et Physiologie des Microalgues, ULiège, Liège, Belgium
| | - Nicolas Berne
- InBioS – PhytoSYSTEMS, Laboratoire de Génétique et Physiologie des Microalgues, ULiège, Liège, Belgium
| | - Tom Feller
- InBioS – PhytoSYSTEMS, Laboratoire de Génétique et Physiologie des Microalgues, ULiège, Liège, Belgium
| | - Damien Godaux
- InBioS – PhytoSYSTEMS, Laboratoire de Génétique et Physiologie des Microalgues, ULiège, Liège, Belgium
| | - Ugo Cenci
- Unité de Glycobiologie Structurale et Fonctionnelle, Université de Lille, CNRS, UMR8576 – UGSF, Lille, France
| | - Pierre Cardol
- InBioS – PhytoSYSTEMS, Laboratoire de Génétique et Physiologie des Microalgues, ULiège, Liège, Belgium
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14
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Usman B, Derakhshani B, Jung KH. Recent Molecular Aspects and Integrated Omics Strategies for Understanding the Abiotic Stress Tolerance of Rice. PLANTS (BASEL, SWITZERLAND) 2023; 12:2019. [PMID: 37653936 PMCID: PMC10221523 DOI: 10.3390/plants12102019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 05/11/2023] [Accepted: 05/17/2023] [Indexed: 09/02/2023]
Abstract
Rice is an important staple food crop for over half of the world's population. However, abiotic stresses seriously threaten rice yield improvement and sustainable production. Breeding and planting rice varieties with high environmental stress tolerance are the most cost-effective, safe, healthy, and environmentally friendly strategies. In-depth research on the molecular mechanism of rice plants in response to different stresses can provide an important theoretical basis for breeding rice varieties with higher stress resistance. This review presents the molecular mechanisms and the effects of various abiotic stresses on rice growth and development and explains the signal perception mode and transduction pathways. Meanwhile, the regulatory mechanisms of critical transcription factors in regulating gene expression and important downstream factors in coordinating stress tolerance are outlined. Finally, the utilization of omics approaches to retrieve hub genes and an outlook on future research are prospected, focusing on the regulatory mechanisms of multi-signaling network modules and sustainable rice production.
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Affiliation(s)
- Babar Usman
- Graduate School of Green Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Republic of Korea; (B.U.)
| | - Behnam Derakhshani
- Graduate School of Green Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Republic of Korea; (B.U.)
| | - Ki-Hong Jung
- Graduate School of Green Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Republic of Korea; (B.U.)
- Research Center for Plant Plasticity, Kyung Hee University, Yongin 17104, Republic of Korea
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15
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Nawaz A, Rehman HU, Usman M, Wakeel A, Shahid MS, Alam S, Sanaullah M, Atiq M, Farooq M. Nanobiotechnology in crop stress management: an overview of novel applications. DISCOVER NANO 2023; 18:74. [PMID: 37382723 PMCID: PMC10214921 DOI: 10.1186/s11671-023-03845-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2023] [Accepted: 04/05/2023] [Indexed: 06/30/2023]
Abstract
Agricultural crops are subject to a variety of biotic and abiotic stresses that adversely affect growth and reduce the yield of crop plantss. Traditional crop stress management approaches are not capable of fulfilling the food demand of the human population which is projected to reach 10 billion by 2050. Nanobiotechnology is the application of nanotechnology in biological fields and has emerged as a sustainable approach to enhancing agricultural productivity by alleviating various plant stresses. This article reviews innovations in nanobiotechnology and its role in promoting plant growth and enhancing plant resistance/tolerance against biotic and abiotic stresses and the underlying mechanisms. Nanoparticles, synthesized through various approaches (physical, chemical and biological), induce plant resistance against these stresses by strengthening the physical barriers, improving plant photosynthesis and activating plant defense mechanisms. The nanoparticles can also upregulate the expression of stress-related genes by increasing anti-stress compounds and activating the expression of defense-related genes. The unique physico-chemical characteristics of nanoparticles enhance biochemical activity and effectiveness to cause diverse impacts on plants. Molecular mechanisms of nanobiotechnology-induced tolerance to abiotic and biotic stresses have also been highlighted. Further research is needed on efficient synthesis methods, optimization of nanoparticle dosages, application techniques and integration with other technologies, and a better understanding of their fate in agricultural systems.
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Affiliation(s)
- Ahmad Nawaz
- Department of Entomology, University of Agriculture, Faisalabad, 38040, Pakistan.
| | - Hafeez Ur Rehman
- Department of Agronomy, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Muhammad Usman
- PEIE Research Chair for the Development of Industrial Estates and Free Zones, Center for Environmental Studies and Research, Sultan Qaboos University, Al-Khoud 123, Muscat, Oman
| | - Abdul Wakeel
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Muhammad Shafiq Shahid
- Department of Plant Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, Al-Khoud 123, Muscat, Oman
| | - Sardar Alam
- Department of Agronomy, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Muhammad Sanaullah
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Muhammad Atiq
- Department of Plant Pathology, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Muhammad Farooq
- Department of Plant Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, Al-Khoud 123, Muscat, Oman.
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16
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Li M, Yao T, Lin W, Hinckley WE, Galli M, Muchero W, Gallavotti A, Chen JG, Huang SSC. Double DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factors. Nat Commun 2023; 14:2600. [PMID: 37147307 PMCID: PMC10163045 DOI: 10.1038/s41467-023-38096-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Accepted: 04/15/2023] [Indexed: 05/07/2023] Open
Abstract
Many eukaryotic transcription factors (TF) form homodimer or heterodimer complexes to regulate gene expression. Dimerization of BASIC LEUCINE ZIPPER (bZIP) TFs are critical for their functions, but the molecular mechanism underlying the DNA binding and functional specificity of homo- versus heterodimers remains elusive. To address this gap, we present the double DNA Affinity Purification-sequencing (dDAP-seq) technique that maps heterodimer binding sites on endogenous genomic DNA. Using dDAP-seq we profile twenty pairs of C/S1 bZIP heterodimers and S1 homodimers in Arabidopsis and show that heterodimerization significantly expands the DNA binding preferences of these TFs. Analysis of dDAP-seq binding sites reveals the function of bZIP9 in abscisic acid response and the role of bZIP53 heterodimer-specific binding in seed maturation. The C/S1 heterodimers show distinct preferences for the ACGT elements recognized by plant bZIPs and motifs resembling the yeast GCN4 cis-elements. This study demonstrates the potential of dDAP-seq in deciphering the DNA binding specificities of interacting TFs that are key for combinatorial gene regulation.
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Affiliation(s)
- Miaomiao Li
- Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, 10003, USA
| | - Tao Yao
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Wanru Lin
- Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, 10003, USA
| | - Will E Hinckley
- Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, 10003, USA
| | - Mary Galli
- Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ, 08854-8020, USA
| | - Wellington Muchero
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Andrea Gallavotti
- Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ, 08854-8020, USA
| | - Jin-Gui Chen
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Shao-Shan Carol Huang
- Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, 10003, USA.
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17
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Thapa R, Tabien RE, Johnson CD, Septiningsih EM. Comparative transcriptomic analysis of germinating rice seedlings to individual and combined anaerobic and cold stress. BMC Genomics 2023; 24:185. [PMID: 37024819 PMCID: PMC10080786 DOI: 10.1186/s12864-023-09262-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Accepted: 03/20/2023] [Indexed: 04/08/2023] Open
Abstract
BACKGROUND Rice is one of the most important cereals consumed worldwide. Two major abiotic factors affecting rice plants in different growth stages are flooding stress and cold stress. These abiotic stresses can take place independently or simultaneously and significantly affect rice plants during germination and seedling growth. Fortunately, a wide array of phenotypic responses conferring flooding stress and chilling stress tolerance exist within the rice germplasm, indicating the presence of different molecular mechanisms underlying tolerance to these stresses. Understanding these differences may assist in developing improved rice cultivars having higher tolerance to both stresses. In this study, we conducted a comparative global gene expression analysis of two rice genotypes with contrasting phenotypes under cold stress, anaerobic stress, and combined cold and anaerobic stress during germination. RESULTS The differential gene expression analysis revealed that 5571 differentially expressed genes (DEGs), 7206 DEGs, and 13279 DEGs were identified under anaerobic stress, cold stress, and combined stress, respectively. Genes involved in the carbohydrate metabolic process, glucosyltransferase activity, regulation of nitrogen compound metabolic process, protein metabolic process, lipid metabolic process, cellular nitrogen compound biosynthetic process, lipid biosynthetic process, and a microtubule-based process were enriched across all stresses. Notably, the common Gene Ontology (GO) analysis identified three hub genes, namely Os08g0176800 (similar to mRNA-associated protein mrnp 41), Os11g0454200 (dehydrin), and OS10g0505900 (expressed protein). CONCLUSION A large number of differentially expressed genes were identified under anaerobic, cold conditions during germination and the combination of the two stress conditions in rice. These results will assist in the identification of promising candidate genes for possible manipulation toward rice crops that are more tolerant under flooding and cold during germination, both independently and concurrently.
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Affiliation(s)
- Ranjita Thapa
- Department of Soil and Crop Sciences, Texas A&M University, College Station, TX, 77843, USA
- Present address: Section of Plant Breeding and Genetics, School of Integrative Plant Sciences, Cornell University, Ithaca, NY, 14853, USA
| | | | - Charles D Johnson
- Genomics and Bioinformatics Service, Texas A&M AgriLife Research, College Station, TX, 77843, USA
| | - Endang M Septiningsih
- Department of Soil and Crop Sciences, Texas A&M University, College Station, TX, 77843, USA.
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18
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Attalage DS, Hettiaratchi JPA, Chu A, Pokhrel D, Jayasinghe PA. Impact of Landfill Gas Exposure on Vegetation in Engineered Landfill Biocover Systems Implemented to Minimize Fugitive Methane Emissions from Landfills. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2023; 20:4448. [PMID: 36901459 PMCID: PMC10001856 DOI: 10.3390/ijerph20054448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2023] [Revised: 02/22/2023] [Accepted: 02/27/2023] [Indexed: 06/18/2023]
Abstract
Engineered landfill biocovers (LBCs) minimize the escape of methane into the atmosphere through biological oxidation. Vegetation plays a crucial role in LBCs and can suffer from hypoxia caused by the displacement of root-zone oxygen due to landfill gas and competition for oxygen with methanotrophic bacteria. To investigate the impact of methane gas on vegetation growth, we conducted an outdoor experiment using eight vegetated flow-through columns filled with a 45 cm mixture of 70% topsoil and 30% compost, planted with three types of vegetation: native grass blend, Japanese millet, and alfalfa. The experiment included three control columns and five columns exposed to methane, as loading rates gradually increased from 75 to 845 gCH4/m2/d over a period of 65 days. At the highest flux, we observed a reduction of 51%, 31%, and 19% in plant height, and 35%, 25%, and 17% in root length in native grass, Japanese millet, and alfalfa, respectively. The column gas profiles indicated that oxygen concentrations were below the levels required for healthy plant growth, which explains the stunted growth observed in the plants used in this experiment. Overall, the experimental results demonstrate that methane gas has a significant impact on the growth of vegetation used in LBCs.
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Affiliation(s)
- Dinu S. Attalage
- Department of Geoscience, University of Calgary, 2500 University Drive, NW, Calgary, AB T2N 1N4, Canada
| | - J. Patrick A. Hettiaratchi
- Department of Civil Engineering, Center for Environmental Engineering Research and Education (CEERE), University of Calgary, 2500 University Drive, NW, Calgary, AB T2N 1N4, Canada
| | - Angus Chu
- Department of Civil Engineering, Center for Environmental Engineering Research and Education (CEERE), University of Calgary, 2500 University Drive, NW, Calgary, AB T2N 1N4, Canada
| | - Dinesh Pokhrel
- Department of Civil Engineering, Center for Environmental Engineering Research and Education (CEERE), University of Calgary, 2500 University Drive, NW, Calgary, AB T2N 1N4, Canada
| | - Poornima A. Jayasinghe
- Department of Civil Engineering, Center for Environmental Engineering Research and Education (CEERE), University of Calgary, 2500 University Drive, NW, Calgary, AB T2N 1N4, Canada
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Gao J, Zhuang S, Gui R. Subsurface aeration mitigates organic material mulching-induced anaerobic stress via regulating hormone signaling in Phyllostachys praecox roots. FRONTIERS IN PLANT SCIENCE 2023; 14:1121604. [PMID: 36938059 PMCID: PMC10014838 DOI: 10.3389/fpls.2023.1121604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 02/17/2023] [Indexed: 06/18/2023]
Abstract
Organic material mulching has been used extensively to allow Phyllostachys praecox to promote growth and development of shoots. However, the bamboo forest always showed a significant degradation, probably due to anaerobic damage caused by the mulching after several years. Therefore, we have innovatively proposed an improvement measure to aerate the underground pipes for the first time. We investigated the role of subsurface pipe aeration in regulating root hypoxia to reduce the stress and to identify the degradation mechanism. Results showed that aeration increased oxygen concentration, shoot yield and root growth compared with mulching, and the aeration enhanced the concentration of indole-3-acetic acid (IAA) and the expression of Aux/IAAs (Aux1, Aux2, Aux3, and Aux4). Aeration reduced gibberellin (GA), ethylene (ETH), and abscisic acid (ABA) contents as well as anaerobic enzyme activities (alanine transaminase, AlaAT; alcohol dehydrogenase, ADH; pyruvate decarboxylase, PDC; and lactate dehydrogenase, LDH), which alleviated root damage in anoxic conditions. Furthermore, correlation showed that the activities of ADH, LDH, PDC, and AlaAT showed significant linear correlations with soil oxygen levels. RDA analyses showed that ABA, IAA, and ETH were found as the key driving hormones of Aux/IAAs in the root of the forest mulched with organic material. Here we show that subsurface aeration increases soil oxygen concentration, shoot yield, root growth and regulates phytohormone concentrations and Aux/IAAs expression, which reduces anaerobic enzyme activities. Consequently, subsurface pipe aeration is an effective measure to mitigate the degradation of bamboo forests caused by soil hypoxia that results from organic material mulching.
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Affiliation(s)
- Jianshuang Gao
- State Key Lab of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
- College of Modern Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Shunyao Zhuang
- State Key Lab of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Renyi Gui
- State Key Lab of Subtropical Silviculture, Zhejiang Agriculture & Forestry University, Hangzhou, China
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20
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Tanaka W, Yamauchi T, Tsuda K. Genetic basis controlling rice plant architecture and its modification for breeding. BREEDING SCIENCE 2023; 73:3-45. [PMID: 37168811 PMCID: PMC10165344 DOI: 10.1270/jsbbs.22088] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 12/25/2022] [Indexed: 05/13/2023]
Abstract
The shoot and root system architectures are fundamental for crop productivity. During the history of artificial selection of domestication and post-domestication breeding, the architecture of rice has significantly changed from its wild ancestor to fulfil requirements in agriculture. We review the recent studies on developmental biology in rice by focusing on components determining rice plant architecture; shoot meristems, leaves, tillers, stems, inflorescences and roots. We also highlight natural variations that affected these structures and were utilized in cultivars. Importantly, many core regulators identified from developmental mutants have been utilized in breeding as weak alleles moderately affecting these architectures. Given a surge of functional genomics and genome editing, the genetic mechanisms underlying the rice plant architecture discussed here will provide a theoretical basis to push breeding further forward not only in rice but also in other crops and their wild relatives.
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Affiliation(s)
- Wakana Tanaka
- Graduate School of Integrated Sciences for Life, Hiroshima University, 1-4-4 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8528, Japan
| | - Takaki Yamauchi
- Bioscience and Biotechnology Center, Nagoya University, Furo-cho, Chikusa, Nagoya, Aichi 464-8601, Japan
| | - Katsutoshi Tsuda
- National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan
- Department of Genetics, School of Life Science, Graduate University for Advanced Studies, 1111 Yata, Mishima, Shizuoka 411-8540, Japan
- Corresponding author (e-mail: )
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Alcantud R, Weiss J, Terry MI, Bernabé N, Verdú-Navarro F, Fernández-Breis JT, Egea-Cortines M. Flower transcriptional response to long term hot and cold environments in Antirrhinum majus. FRONTIERS IN PLANT SCIENCE 2023; 14:1120183. [PMID: 36778675 PMCID: PMC9911551 DOI: 10.3389/fpls.2023.1120183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Accepted: 01/13/2023] [Indexed: 06/18/2023]
Abstract
Short term experiments have identified heat shock and cold response elements in many biological systems. However, the effect of long-term low or high temperatures is not well documented. To address this gap, we grew Antirrhinum majus plants from two-weeks old until maturity under control (normal) (22/16°C), cold (15/5°C), and hot (30/23°C) conditions for a period of two years. Flower size, petal anthocyanin content and pollen viability obtained higher values in cold conditions, decreasing in middle and high temperatures. Leaf chlorophyll content was higher in cold conditions and stable in control and hot temperatures, while pedicel length increased under hot conditions. The control conditions were optimal for scent emission and seed production. Scent complexity was low in cold temperatures. The transcriptomic analysis of mature flowers, followed by gene enrichment analysis and CNET plot visualization, showed two groups of genes. One group comprised genes controlling the affected traits, and a second group appeared as long-term adaptation to non-optimal temperatures. These included hypoxia, unsaturated fatty acid metabolism, ribosomal proteins, carboxylic acid, sugar and organic ion transport, or protein folding. We found a differential expression of floral organ identity functions, supporting the flower size data. Pollinator-related traits such as scent and color followed opposite trends, indicating an equilibrium for rendering the organs for pollination attractive under changing climate conditions. Prolonged heat or cold cause structural adaptations in protein synthesis and folding, membrane composition, and transport. Thus, adaptations to cope with non-optimal temperatures occur in basic cellular processes.
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Affiliation(s)
- Raquel Alcantud
- Genética Molecular, Instituto de Biotecnología Vegetal, Edificio I+D+I, Plaza del Hospital s/n, Universidad Politécnica de Cartagena, Cartagena, Spain
| | - Julia Weiss
- Genética Molecular, Instituto de Biotecnología Vegetal, Edificio I+D+I, Plaza del Hospital s/n, Universidad Politécnica de Cartagena, Cartagena, Spain
| | - Marta I. Terry
- Genética Molecular, Instituto de Biotecnología Vegetal, Edificio I+D+I, Plaza del Hospital s/n, Universidad Politécnica de Cartagena, Cartagena, Spain
| | - Nuria Bernabé
- Department of Informatics and Systems, Campus de Espinardo, Universidad de Murcia, Instituto Murciano de Investigaciones Biomédicas (IMIB)-Arrixaca, Murcia, Spain
| | - Fuensanta Verdú-Navarro
- Genética Molecular, Instituto de Biotecnología Vegetal, Edificio I+D+I, Plaza del Hospital s/n, Universidad Politécnica de Cartagena, Cartagena, Spain
- R&D Department, Bionet Engineering, Av/Azul, Parque Tecnológico Fuente Álamo, Murcia, Spain
| | - Jesualdo Tomás Fernández-Breis
- Department of Informatics and Systems, Campus de Espinardo, Universidad de Murcia, Instituto Murciano de Investigaciones Biomédicas (IMIB)-Arrixaca, Murcia, Spain
| | - Marcos Egea-Cortines
- Genética Molecular, Instituto de Biotecnología Vegetal, Edificio I+D+I, Plaza del Hospital s/n, Universidad Politécnica de Cartagena, Cartagena, Spain
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22
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Al-Khayri JM, Rashmi R, Surya Ulhas R, Sudheer WN, Banadka A, Nagella P, Aldaej MI, Rezk AAS, Shehata WF, Almaghasla MI. The Role of Nanoparticles in Response of Plants to Abiotic Stress at Physiological, Biochemical, and Molecular Levels. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12020292. [PMID: 36679005 PMCID: PMC9865530 DOI: 10.3390/plants12020292] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2022] [Revised: 11/23/2022] [Accepted: 11/26/2022] [Indexed: 05/22/2023]
Abstract
In recent years, the global agricultural system has been unfavorably impacted by adverse environmental changes. These changes in the climate, in turn, have altered the abiotic conditions of plants, affecting plant growth, physiology and production. Abiotic stress in plants is one of the main obstacles to global agricultural production and food security. Therefore, there is a need for the development of novel approaches to overcome these problems and achieve sustainability. Nanotechnology has emerged as one such novel approach to improve crop production, through the utilization of nanoscale products, such as nanofertilizer, nanofungicides, nanoherbicides and nanopesticides. Their ability to cross cellular barriers makes nanoparticles suitable for their application in agriculture. Since they are easily soluble, smaller, and effective for uptake by plants, nanoparticles are widely used as a modern agricultural tool. The implementation of nanoparticles has been found to be effective in improving the qualitative and quantitative aspects of crop production under various biotic and abiotic stress conditions. This review discusses various abiotic stresses to which plants are susceptible and highlights the importance of the application of nanoparticles in combating abiotic stress, in addition to the major physiological, biochemical and molecular-induced changes that can help plants tolerate stress conditions. It also addresses the potential environmental and health impacts as a result of the extensive use of nanoparticles.
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Affiliation(s)
- Jameel Mohammed Al-Khayri
- Department of Agricultural Biotechnology, College of Agriculture and Food Sciences, King Faisal University, Al-Ahsa 31982, Saudi Arabia
- Correspondence: (J.M.A.-K.); (P.N.)
| | - Ramakrishnan Rashmi
- Department of Life Sciences, CHRIST (Deemed to be University), Bangalore 560 029, Karnataka, India
| | - Rutwick Surya Ulhas
- Faculty of Biological Sciences, Institute of Biochemistry and Biophysics, Friedrich-Schiller-Universität, Furstengraben 1, 07743 Jena, Germany
| | - Wudali N. Sudheer
- Department of Life Sciences, CHRIST (Deemed to be University), Bangalore 560 029, Karnataka, India
| | - Akshatha Banadka
- Department of Life Sciences, CHRIST (Deemed to be University), Bangalore 560 029, Karnataka, India
| | - Praveen Nagella
- Department of Life Sciences, CHRIST (Deemed to be University), Bangalore 560 029, Karnataka, India
- Correspondence: (J.M.A.-K.); (P.N.)
| | - Mohammed Ibrahim Aldaej
- Department of Agricultural Biotechnology, College of Agriculture and Food Sciences, King Faisal University, Al-Ahsa 31982, Saudi Arabia
| | - Adel Abdel-Sabour Rezk
- Department of Agricultural Biotechnology, College of Agriculture and Food Sciences, King Faisal University, Al-Ahsa 31982, Saudi Arabia
- Virus & Phytoplasma Research Department, Plant Pathology Research Institute, Agricultural Research Center, Giza 3725005, Egypt
| | - Wael Fathi Shehata
- Department of Agricultural Biotechnology, College of Agriculture and Food Sciences, King Faisal University, Al-Ahsa 31982, Saudi Arabia
| | - Mustafa Ibrahim Almaghasla
- Department of Arid Land Agriculture, College of Agriculture and Food Sciences, King Faisal University, Al-Ahsa 31982, Saudi Arabia
- Plant Pests, and Diseases Unit, College of Agriculture and Food Sciences, King Faisal University, Al-Ahsa 31982, Saudi Arabia
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Shahzad F, Tang L, Vashisth T. Unraveling the mystery of canopy dieback caused by citrus disease Huanglongbing and its link to hypoxia stress. FRONTIERS IN PLANT SCIENCE 2023; 14:1119530. [PMID: 37139109 PMCID: PMC10149946 DOI: 10.3389/fpls.2023.1119530] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 02/15/2023] [Indexed: 05/05/2023]
Abstract
Devastating citrus disease Huanglongbing (HLB) is without existing cures. Herein, we present results demonstrating the possible mechanisms (hypoxia stress) behind HLB-triggered shoot dieback by comparing the transcriptomes, hormone profiles, and key enzyme activities in buds of severely and mildly symptomatic 'Hamlin' sweet orange (Citrus sinensis). Within six months (October - May) in field conditions, severe trees had 23% bud dieback, greater than mild trees (11%), with a concomitant reduction in canopy density. In February, differentially expressed genes (DEGs) associated with responses to osmotic stress, low oxygen levels, and cell death were upregulated, with those for photosynthesis and cell cycle downregulated in severe versus mild trees. For severe trees, not only were the key markers for hypoxia, including anaerobic fermentation, reactive oxygen species (ROS) production, and lipid oxidation, transcriptionally upregulated, but also alcohol dehydrogenase activity was significantly greater compared to mild trees, indicating a link between bud dieback and hypoxia. Tricarboxylic acid cycle revival, given the upregulation of glutamate dehydrogenase and alanine aminotransferase DEGs, suggests that ROS may also be generated during hypoxia-reoxygenation. Greater (hormonal) ratios of abscisic acid to cytokinins and jasmonates and upregulated DEGs encoding NADPH oxidases in severe versus mild trees indicate additional ROS production under limited oxygen availability due to stomata closure. Altogether, our results provided evidence that as HLB progresses, excessive ROS produced in response to hypoxia and during hypoxia-reoxygenation likely intensify the oxidative stress in buds leading to cell death, contributing to marked bud and shoot dieback and decline of the severely symptomatic sweet orange trees.
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Affiliation(s)
- Faisal Shahzad
- Horticultural Sciences Department, Citrus Research and Education Center, Institute of Food and Agricultural Sciences (IFAS), University of Florida, Lake Alfred, FL, United States
| | - Lisa Tang
- Horticultural Sciences Department, Citrus Research and Education Center, Institute of Food and Agricultural Sciences (IFAS), University of Florida, Lake Alfred, FL, United States
- United States Department of Agriculture, Agricultural Research Service, Appalachian Fruit Research Station, Kearneysville, WV, United States
| | - Tripti Vashisth
- Horticultural Sciences Department, Citrus Research and Education Center, Institute of Food and Agricultural Sciences (IFAS), University of Florida, Lake Alfred, FL, United States
- *Correspondence: Tripti Vashisth,
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24
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Huo L, Wang H, Wang Q, Gao Y, Xu K, Sun X. Exogenous treatment with melatonin enhances waterlogging tolerance of kiwifruit plants. FRONTIERS IN PLANT SCIENCE 2022; 13:1081787. [PMID: 36570925 PMCID: PMC9780670 DOI: 10.3389/fpls.2022.1081787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Accepted: 11/25/2022] [Indexed: 06/17/2023]
Abstract
Waterlogging stress has an enormous negative impact on the kiwifruit yield and quality. The protective role of exogenous melatonin on water stress has been widely studied, especially in drought stress. However, the research on melatonin-induced waterlogging tolerance is scarce. Here, we found that treatment with exogenous melatonin could effectively alleviate the damage on kiwifruit plants in response to waterlogging treatment. This was accompanied by higher antioxidant activity and lower ROS accumulation in kiwifruit roots during stress period. The detection of changes in amino acid levels of kiwifruit roots during waterlogging stress showed a possible interaction between melatonin and amino acid metabolism, which promoted the tolerance of kiwifruit plants to waterlogging. The higher levels of GABA and Pro in the roots of melatonin-treated kiwifruit plants partly contributed to their improved waterlogging tolerance. In addition, some plant hormones were also involved in the melatonin-mediated waterlogging tolerance, such as the enhancement of ACC accumulation. This study discussed the melatonin-mediated water stress tolerance of plants from the perspective of amino acid metabolism for the first time.
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Affiliation(s)
| | | | | | | | - Kai Xu
- *Correspondence: Kai Xu, ; Liuqing Huo,
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25
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McDowell NG, Ball M, Bond‐Lamberty B, Kirwan ML, Krauss KW, Megonigal JP, Mencuccini M, Ward ND, Weintraub MN, Bailey V. Processes and mechanisms of coastal woody-plant mortality. GLOBAL CHANGE BIOLOGY 2022; 28:5881-5900. [PMID: 35689431 PMCID: PMC9544010 DOI: 10.1111/gcb.16297] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2022] [Accepted: 05/24/2022] [Indexed: 05/26/2023]
Abstract
Observations of woody plant mortality in coastal ecosystems are globally widespread, but the overarching processes and underlying mechanisms are poorly understood. This knowledge deficiency, combined with rapidly changing water levels, storm surges, atmospheric CO2 , and vapor pressure deficit, creates large predictive uncertainty regarding how coastal ecosystems will respond to global change. Here, we synthesize the literature on the mechanisms that underlie coastal woody-plant mortality, with the goal of producing a testable hypothesis framework. The key emergent mechanisms underlying mortality include hypoxic, osmotic, and ionic-driven reductions in whole-plant hydraulic conductance and photosynthesis that ultimately drive the coupled processes of hydraulic failure and carbon starvation. The relative importance of these processes in driving mortality, their order of progression, and their degree of coupling depends on the characteristics of the anomalous water exposure, on topographic effects, and on taxa-specific variation in traits and trait acclimation. Greater inundation exposure could accelerate mortality globally; however, the interaction of changing inundation exposure with elevated CO2 , drought, and rising vapor pressure deficit could influence mortality likelihood. Models of coastal forests that incorporate the frequency and duration of inundation, the role of climatic drivers, and the processes of hydraulic failure and carbon starvation can yield improved estimates of inundation-induced woody-plant mortality.
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Affiliation(s)
- Nate G. McDowell
- Atmospheric Sciences and Global Change DivisionPacific Northwest National LabRichlandWashingtonUSA
- School of Biological SciencesWashington State UniversityPullmanWashingtonUSA
| | - Marilyn Ball
- Plant Science Division, Research School of BiologyThe Australian National UniversityActonAustralian Capital TerritoryAustralia
| | - Ben Bond‐Lamberty
- Joint Global Change Research Institute, Pacific Northwest National LaboratoryCollege ParkMarylandUSA
| | - Matthew L. Kirwan
- Virginia Institute of Marine Science, William & MaryGloucester PointVirginiaUSA
| | - Ken W. Krauss
- U.S. Geological Survey, Wetland and Aquatic Research CenterLafayetteLouisianaUSA
| | | | - Maurizio Mencuccini
- ICREA, Passeig Lluís Companys 23BarcelonaSpain
- CREAFCampus UAB, BellaterraBarcelonaSpain
| | - Nicholas D. Ward
- Marine and Coastal Research LaboratoryPacific Northwest National LaboratorySequimWashingtonUSA
- School of OceanographyUniversity of WashingtonSeattleWashingtonUSA
| | - Michael N. Weintraub
- Department of Environmental SciencesUniversity of ToledoToledoOhioUSA
- Biological Sciences DivisionPacific Northwest National LaboratoryWashingtonUSA
| | - Vanessa Bailey
- Biological Sciences DivisionPacific Northwest National LaboratoryWashingtonUSA
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26
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Martínez‐Arias C, Witzell J, Solla A, Martin JA, Rodríguez‐Calcerrada J. Beneficial and pathogenic plant-microbe interactions during flooding stress. PLANT, CELL & ENVIRONMENT 2022; 45:2875-2897. [PMID: 35864739 PMCID: PMC9543564 DOI: 10.1111/pce.14403] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Revised: 07/06/2022] [Accepted: 07/11/2022] [Indexed: 05/29/2023]
Abstract
The number and intensity of flood events will likely increase in the future, raising the risk of flooding stress in terrestrial plants. Understanding flood effects on plant physiology and plant-associated microbes is key to alleviate flooding stress in sensitive species and ecosystems. Reduced oxygen supply is the main constrain to the plant and its associated microbiome. Hypoxic conditions hamper root aerobic respiration and, consequently, hydraulic conductance, nutrient uptake, and plant growth and development. Hypoxia favours the presence of anaerobic microbes in the rhizosphere and roots with potential negative effects to the plant due to their pathogenic behaviour or their soil denitrification ability. Moreover, plant physiological and metabolic changes induced by flooding stress may also cause dysbiotic changes in endosphere and rhizosphere microbial composition. The negative effects of flooding stress on the holobiont (i.e., the host plant and its associated microbiome) can be mitigated once the plant displays adaptive responses to increase oxygen uptake. Stress relief could also arise from the positive effect of certain beneficial microbes, such as mycorrhiza or dark septate endophytes. More research is needed to explore the spiralling, feedback flood responses of plant and microbes if we want to promote plant flood tolerance from a holobiont perspective.
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Affiliation(s)
- Clara Martínez‐Arias
- Departamento de Sistemas y Recursos Naturales, Escuela Técnica Superior de Ingeniería de Montes, Forestal y del Medio NaturalUniversidad Politécnica de MadridMadridSpain
| | - Johanna Witzell
- Department of Forestry and Wood TechnologyLinnaeus UniversityVäxjöSweden
| | - Alejandro Solla
- Faculty of Forestry, Institute for Dehesa Research (INDEHESA)Universidad de ExtremaduraPlasenciaSpain
| | - Juan Antonio Martin
- Departamento de Sistemas y Recursos Naturales, Escuela Técnica Superior de Ingeniería de Montes, Forestal y del Medio NaturalUniversidad Politécnica de MadridMadridSpain
| | - Jesús Rodríguez‐Calcerrada
- Departamento de Sistemas y Recursos Naturales, Escuela Técnica Superior de Ingeniería de Montes, Forestal y del Medio NaturalUniversidad Politécnica de MadridMadridSpain
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27
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Gao J, Qian Z, Zhang Y, Zhuang S. Exogenous spermidine regulates the anaerobic enzyme system through hormone concentrations and related-gene expression in Phyllostachys praecox roots under flooding stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 186:182-196. [PMID: 35868108 DOI: 10.1016/j.plaphy.2022.07.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Accepted: 07/01/2022] [Indexed: 06/15/2023]
Abstract
PURPOSE Acclimation to hypoxia and anoxia is important in various ecological systems, especially flooded soil. Phyllostachys pracecox is sensitive to flooding, and therefore, it is important to explore ways of alleviating hypoxia stress in the roots. In this study, we investigated the regulatory effect of spermidine (Spd) on flooded P. praecox seedlings. METHODS A batch experiment was carried out in roots treated with Spd under flooding for eight days. The following factors were subsequently measured: growth, survival rate, root respiratory activity, soluble protein and anaerobic respiration enzyme contents (pyruvate decarboxylase, PDC; alcohol dehydrogenase, ADH; lactate dehydrogenase, LDH; alanine aminotransferase, AlaAT), S-adenosylmethionine decarboxylase (SAMDC), nitrate reductase (NR), ACC oxidase (ACO) and ACC synthetase (ACS) activities, free Spd, spermine (Spm) and the diamine precursor putrescine (Put) content, indole-3-acetic acid (IAA) and abscisic acid (ABA) content, ethylene emissions and expression of hormone-related genes. RESULTS Application of Spd promoted root growth (root length, volume, surface and dry weight) and root respiratory inhibition, improved the soluble protein content, and reduced the O2·- production rate, H2O2 and MDA content to alleviate the damage of roots under flooding. A significant increase in SAMDC activity, and ABA and IAA contents were also observed, along with a reduction in ethylene emissions, NR, ACO and ACS activities (p < 0.05). Exogenous Spd increased the free Spd and Spm contents in the P. praecox roots, but decreased the free Put content. Taken together, these findings suggest that hypoxia stress was alleviated. Moreover, exogenous Spd up-regulated the expression of auxin-related genes ARF1, AUX1, AUX2, AUX3 and AUX4, and down-regulated the expression of ethylene-related ACO and ACS genes during flooding. In addition, correlation and RDA analysis showed that ARF1, ACO and ACS significantly promoted the expression of auxin, ACO and ACS enzyme activities, respectively (p < 0.05), while ADH, NR, AlaAT, ethylene emissions, Put, Spd, ACS and ACO were significantly correlated with ACS, ACO, and auxin-related gene expression (p < 0.05). Overall, ethylene emissions, ACS and ACO were identified as the main drivers of ethylene and auxin-related gene structure. CONCLUSIONS These results suggest that Spd regulated hormone concentrations, the content of Spd, Spm and Put, and related gene expression, in turn regulating physiological changes such as anaerobic enzyme activity, mitigating flooding stress in the roots and improving overall growth. Spd therefore has the potential to improve the adaptability of P. praecox to flooding stress.
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Affiliation(s)
- Jianshuang Gao
- State Key Lab of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhuangzhuang Qian
- College of Forestry, Nanjing Forestry University, 159 Longpan Road, Nanjing, 210037, China
| | - Yuhe Zhang
- State Key Lab of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Shunyao Zhuang
- State Key Lab of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.
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28
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Fu Y, Rao X, Bian Q, Feng Y, Huang J, Wang Z. Study on the Oxygen Consumption Rule of Hydroponic Cotton in Different Periods. Appl Bionics Biomech 2022; 2022:4560732. [PMID: 35836776 PMCID: PMC9276493 DOI: 10.1155/2022/4560732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Accepted: 04/11/2022] [Indexed: 11/24/2022] Open
Abstract
In this paper, the decay law of dissolved oxygen in the culture solution of cotton in the seedling stage, bud stage, and blossoming and boll-forming stage was studied via hydroponic cotton experiments, and then, the oxygen consumption and its rule of cotton were explored. The results showed that with the increase of the cultivation time, the dissolved oxygen concentration of the cotton at seedling stage, bud stage, and blossoming and boll-forming stage showed an exponential function decrease. The dissolved oxygen concentration of the culture medium decreased from about 7.5 mg·L-1 to a relatively stable dissolved oxygen concentration, which was 4.92 mg·L-1, 1.64 mg·L-1, and 1.82 mg·L-1, respectively. When CK is about 7.1 mg·L-1, a relative equilibrium point between low oxygen absorption rate of cotton and oxygen supply is reached. The sudden drop points of the instant oxygen consumption rate of cotton seedling stage and bud stage are at about 5.15 mg·L-1 and 5.89 mg·L-1, respectively, while the sudden drop point was not obvious at the blossoming and boll-forming stage. The budding cotton can absorb oxygen when the dissolved oxygen in the culture solution is at a higher level. The blossoming and boll-forming stage cotton is more resistant to hypoxia stress.
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Affiliation(s)
- Yanbo Fu
- Institute of Soil Fertilizer and Agricultural Water Saving, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China
| | - Xiaojuan Rao
- Xinjiang Vocational College of Agriculture, Changji, Xinjiang 831100, China
| | - Qingyong Bian
- National Agricultural Experimental Station for Soil Quality Aksu, Aksu 8300914, Xinjiang, China
| | - Yaozu Feng
- Science and Technology Achievements Transformation Center, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China
| | - Jian Huang
- Institute of Soil Fertilizer and Agricultural Water Saving, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China
| | - Zhiguo Wang
- Science and Technology Achievements Transformation Center, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China
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29
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Nie X, Mira M, Igamberdiev AU, Hill RD, Stasolla C. Anaerobiosis modulation of two phytoglobins in barley (Hordeum vulgare L.), and their regulation by gibberellin and abscisic acid in aleurone cells. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 182:174-181. [PMID: 35504225 DOI: 10.1016/j.plaphy.2022.04.014] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 04/05/2022] [Accepted: 04/12/2022] [Indexed: 06/14/2023]
Abstract
The transcript levels of the phytoglobin (Pgb) genes Pgb1 and Pgb3, and the protein content of Pgb1 were responsive to anaerobiosis in several tissues of barley (Hordeum vulgare L.). Oxygen deficiency induced the level of both Pgb transcripts and protein in aleurone layers and coleoptiles, as well as up-regulated both Pgb1 and Pgb3 in leaves, apexes and more strongly in roots of barley seedlings. In O2-depleted aleurone cells the induction of the Pgb transcript-protein pair was reversed by re-supplying O2. Based on this observation, it is suggested that Pgb1 and Pgb3 are inducible in all tissues. In aleurone cells, gibberellic acid (GA) induced Pgb1 and Pgb3 together with α-amylase, whereas abscisic acid (ABA) eliminated the GA stimulating effects on both α-amylase and Pgb1 and Pgb3 expression. While GA had no effects on alcohol dehydrogenase (Adh1, Adh2 and Adh3) transcripts, ABA induced all three Adh genes. It is concluded that Pgb and α-amylase in seeds are regulated reciprocally with the ethanolic fermentation pathway, and that Pgb induction is mediated by GA. Nitric oxide turnover and scavenging mediated by Pgb represents an important alternative to fermentation under anoxia.
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Affiliation(s)
- Xianzhou Nie
- Department of Plant Science, University of Manitoba, Winnipeg, Manitoba, R3T2N2, Canada
| | - Mohammed Mira
- Department of Plant Science, University of Manitoba, Winnipeg, Manitoba, R3T2N2, Canada; Department of Botany and Microbiology, Faculty of Science, Tanta University, Tanta, 31527, Egypt
| | - Abir U Igamberdiev
- Department of Biology, Memorial University of Newfoundland, St. John's, NL, A1B3X9, Canada
| | - Robert D Hill
- Department of Plant Science, University of Manitoba, Winnipeg, Manitoba, R3T2N2, Canada
| | - Claudio Stasolla
- Department of Plant Science, University of Manitoba, Winnipeg, Manitoba, R3T2N2, Canada.
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30
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Liu D, Paul AL, Morgan KT, Liu G. Effects of oxygen fertilization on damage reduction in flooded snap bean (Phaseolus vulgaris L.). Sci Rep 2022; 12:4282. [PMID: 35277544 PMCID: PMC8917216 DOI: 10.1038/s41598-022-08165-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 03/03/2022] [Indexed: 11/09/2022] Open
Abstract
Flooding is one of the major abiotic stresses for vegetable production in Florida. Hydroponic and pot trials were conducted with snap bean to evaluate the effects of oxygen fertilization on the biochemical and physiological status of flooded snap bean plants. There were three treatments in the hydroponic trials were: (1) flooded (control), (2) bubble aeration with ambient air, and (3) hydrogen peroxide (H2O2) applied at the beginning of the trial. Plant health was evaluated by determining nitrogen (N) and phosphorus (P) uptake rates. The greenhouse pot trials were used to quantify the effects of three different application rates of solid oxygen fertilizers as calcium peroxide (CaO2) and magnesium peroxide (MgO2). The results showed that plant N and P uptake rates were significantly greater (p < 0.05) with H2O2 than without H2O2. The N uptake rates with H2O2 were like that of those with bubbling. The uptake rate of NH4+ was significantly greater than that of NO3- with the bubbling and H2O2 conditions, but the uptake rate of NO3- was significantly greater than that of NH4+ in the flooding condition. The plant height, leaf greenness, shoot biomass, and yield were all significantly greater with CaO2 or MgO2 than without either solid oxygen fertilizer. The minimum damage of flooded snap bean was found with 2 g CaO2 or 4 g MgO2 per pot. These results indicated that oxygen fertilization may potentially improve yield of flooded snap bean plants.
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Affiliation(s)
- Danyang Liu
- Horticultural Sciences Department, University of Florida/IFAS, 1253 Fifield Hall, 2550 Hull Road, PO Box 110690, Gainesville, FL, 32611, USA
| | - Anna-Lisa Paul
- Horticultural Sciences Department, University of Florida/IFAS, 1253 Fifield Hall, 2550 Hull Road, PO Box 110690, Gainesville, FL, 32611, USA.,University of Florida Interdisciplinary Center for Biotechnology Research, Gainesville, FL, 32610, USA
| | - Kelly T Morgan
- Soil and Water Science Department, University of Florida/IFAS, McCarty Hall, Gainesville, FL, 32611, USA
| | - Guodong Liu
- Horticultural Sciences Department, University of Florida/IFAS, 1253 Fifield Hall, 2550 Hull Road, PO Box 110690, Gainesville, FL, 32611, USA.
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31
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Deng X, Yang D, Sun H, Liu J, Song H, Xiong Y, Wang Y, Ma J, Zhang M, Li J, Liu Y, Yang M. Time-course analysis and transcriptomic identification of key response strategies to complete submergence in Nelumbo nucifera. HORTICULTURE RESEARCH 2022; 9:uhac001. [PMID: 35147174 PMCID: PMC8973275 DOI: 10.1093/hr/uhac001] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Accepted: 12/12/2021] [Indexed: 05/12/2023]
Abstract
Water submergence is an environmental stress with detrimental effects on plant growth and survival. As a wetland plant species, lotus (Nelumbo nucifera) is widely cultivated in flood-prone lowlands throughout Asian countries, but little is known about its endurance and acclimation mechanisms to complete submergence. Here, we combined a time-course submergence experiment and an RNA-sequencing transcriptome analysis on two lotus varieties of "Qiuxing" and "China Antique". Both varieties showed a low submergence tolerance, with a median lethal time of around 10 days. Differentially expressed gene (DEG) analysis and weighted gene co-expression network analysis (WGCNA) identified a number of key genes putatively involved in lotus submergence responses. Lotus plants under complete submergence developed thinned leaves and elongated petioles containing high density of aerenchyma. All four lotus submergence responsive ERF-VII genes and gene sets corresponding to the low oxygen "escape" strategy (LOES) were elevated. In addition, a number of lotus innate immunity genes were rapidly induced by submergence, likely to confer resistance to possible pathogen infections. Our data also reveals the likely involvement of jasmonic acid in modulating lotus submergence responses, but to a lesser extent than the gaseous ethylene hormone. These results suggest that lotus plants primarily take the LOES strategy in coping with submergence-induced complex stresses, and will be valuable for people understanding the molecular basis underlying the plant submergence acclimations.
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Affiliation(s)
- Xianbao Deng
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, China
| | - Dong Yang
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, China
| | - Heng Sun
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
| | - Juan Liu
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
| | - Heyun Song
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- University of Chinese Academy of Sciences, 19A Yuquanlu, Beijing, 100049, China
| | - Yaqian Xiong
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- University of Chinese Academy of Sciences, 19A Yuquanlu, Beijing, 100049, China
| | - Yunmeng Wang
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- University of Chinese Academy of Sciences, 19A Yuquanlu, Beijing, 100049, China
| | - Junyu Ma
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- University of Chinese Academy of Sciences, 19A Yuquanlu, Beijing, 100049, China
| | - Minghua Zhang
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- University of Chinese Academy of Sciences, 19A Yuquanlu, Beijing, 100049, China
| | - Jing Li
- School of Chemistry, Chemical Engineering and Life Sciences, Wuhan University of Technology, Wuhan 430070, China
| | - Yanling Liu
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, China
| | - Mei Yang
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, China
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Beamer ZG, Routray P, Choi WG, Spangler MK, Lokdarshi A, Roberts DM. Aquaporin family lactic acid channel NIP2;1 promotes plant survival under low oxygen stress in Arabidopsis. PLANT PHYSIOLOGY 2021; 187:2262-2278. [PMID: 34890456 PMCID: PMC8644545 DOI: 10.1093/plphys/kiab196] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Accepted: 03/28/2021] [Indexed: 05/05/2023]
Abstract
Under anaerobic stress, Arabidopsis thaliana induces the expression of a collection of core hypoxia genes that encode proteins for an adaptive response. Among these genes is NIP2;1, which encodes a member of the "Nodulin 26-like Intrinsic Protein" (NIP) subgroup of the aquaporin superfamily of membrane channel proteins. NIP2;1 expression is limited to the "anoxia core" region of the root stele under normal growth conditions, but shows substantial induction (up to 1,000-fold by 2-4 h of hypoxia) by low oxygen stress, and accumulation in all root tissues. During hypoxia, NIP2;1-GFP accumulates predominantly on the plasma membrane by 2 h, is distributed between the plasma and internal membranes during sustained hypoxia, and remains elevated in root tissues through 4 h of reoxygenation recovery. In response to hypoxia challenge, T-DNA insertion mutant nip2;1 plants exhibit elevated lactic acid within root tissues, reduced efflux of lactic acid, and reduced acidification of the external medium compared to wild-type plants. Previous biochemical evidence demonstrates that NIP2;1 has lactic acid channel activity, and our work supports the hypothesis that NIP2;1 prevents lactic acid toxicity by facilitating release of cellular lactic acid from the cytosol to the apoplast, supporting eventual efflux to the rhizosphere. In evidence, nip2;1 plants demonstrate poorer survival during argon-induced hypoxia stress. Expressions of the ethanolic fermentation transcript Alcohol Dehydrogenase1 and the core hypoxia-induced transcript Alanine Aminotransferase1 are elevated in nip2;1, and expression of the Glycolate Oxidase3 transcript is reduced, suggesting NIP2;1 lactic acid efflux regulates other pyruvate and lactate metabolism pathways.
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Affiliation(s)
- Zachary G Beamer
- Department of Biochemistry and Cellular, and Molecular Biology, the University of Tennessee, Knoxville, Tennessee 37996, USA
| | | | - Won-Gyu Choi
- Department of Biochemistry and Molecular Biology, The University of Nevada, Reno, Nevada 89557, USA
| | - Margaret K Spangler
- Department of Biochemistry and Cellular, and Molecular Biology, the University of Tennessee, Knoxville, Tennessee 37996, USA
| | - Ansul Lokdarshi
- Department of Biochemistry and Cellular, and Molecular Biology, the University of Tennessee, Knoxville, Tennessee 37996, USA
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Huang JS, Li HJ, Guo ZX, Zhang JD, Wang WZ, Wang ZL, Amenyogbe E, Chen G. Identification and expression analysis of cobia (Rachycentron canadum) liver-related miRNAs under hypoxia stress. FISH PHYSIOLOGY AND BIOCHEMISTRY 2021; 47:1951-1967. [PMID: 34633578 DOI: 10.1007/s10695-021-01017-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 09/09/2021] [Indexed: 06/13/2023]
Abstract
At present, due to the influence of global warming, seasonal change, diurnal variation, and eutrophication of the water body, hypoxia has become one of the major factors limiting the stable development of cobia (Rachycentron canadum) culture. In this study, the miRNAs involved in hypoxia stress were screened, and the target genes of miRNAs were annotated and analyzed. The results showed that a total of 184 conservative microRNA (miRNA) and 121 newly predicted miRNA were obtained by sequencing the liver of control (C) and hypoxic (dissolved oxygen, DO (2.64 ± 0.25) mg/L; 3 h) (S) groups. The pathways involved in energy metabolism included starch and sucrose metabolism (ko00500), glycosaminoglycan degradation (ko00531), and galactose metabolism (ko00052). The results indicate that the body maintains physiological activities by regulating some important pathways at the transcriptional level under hypoxia stress, such as the conversion of aerobic metabolism and anaerobic metabolism, the reduction of energy consumption, and the promotion of red blood cell proliferation to maintain the homeostasis of the body.
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Affiliation(s)
- Jian-Sheng Huang
- Fishery College, Guangdong Ocean University, Zhanjiang, 524025, China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhanjiang), Zhanjiang, 524025, China
- Guangdong Provincial Key Laboratory of Pathogenic Biology and Epidemiology for Aquatic Economic Animals, Zhanjiang, 524088, China
| | - Hong-Juan Li
- Fishery College, Guangdong Ocean University, Zhanjiang, 524025, China
| | - Zhi-Xiong Guo
- Fishery College, Guangdong Ocean University, Zhanjiang, 524025, China
| | - Jian-Dong Zhang
- Fishery College, Guangdong Ocean University, Zhanjiang, 524025, China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhanjiang), Zhanjiang, 524025, China
- Guangdong Provincial Key Laboratory of Pathogenic Biology and Epidemiology for Aquatic Economic Animals, Zhanjiang, 524088, China
| | - Wei-Zheng Wang
- Fishery College, Guangdong Ocean University, Zhanjiang, 524025, China
| | - Zhong-Liang Wang
- Fishery College, Guangdong Ocean University, Zhanjiang, 524025, China
| | - Eric Amenyogbe
- Fishery College, Guangdong Ocean University, Zhanjiang, 524025, China.
| | - Gang Chen
- Fishery College, Guangdong Ocean University, Zhanjiang, 524025, China.
- Southern Marine Science and Engineering Guangdong Laboratory (Zhanjiang), Zhanjiang, 524025, China.
- Guangdong Provincial Key Laboratory of Pathogenic Biology and Epidemiology for Aquatic Economic Animals, Zhanjiang, 524088, China.
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Short-Term Waterlogging Depresses Early Growth of Sunflower (Helianthus annuus L.) on Saline Soils with a Shallow Water Table in the Coastal Zone of Bangladesh. SOIL SYSTEMS 2021. [DOI: 10.3390/soilsystems5040068] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Sunflower (Helianthus annuus L.), which is widely grown globally for its high-quality edible oil, is reasonably salt and drought tolerant but it is susceptible to waterlogging. In the saline coastal zone of the Ganges delta, sunflower is often exposed to sudden heavy rainfall during early growth but plant tolerance to such events is not known. Hence, we evaluated the effect of short-term soil inundation (referred to as waterlogging) for 0, 24, 48 and 72 h on sunflower at emergence, 2-leaf, and 4-leaf stages in early- and late-sown crops under field conditions (saline, clay-textured soil, and shallow groundwater). Waterlogging for 24 h did not affect sunflower at any stage but waterlogging for 48 and 72 h suppressed emergence and growth at the 2 and 4-leaf stages. Waterlogging for 72 h completely prevented the emergence for early sowing, whereas emergence was less affected for later sowing. Shoot and root dry weight were most affected at the emergence and 2-leaf stage, not at the 4-leaf stage. In conclusion, waterlogging caused by more than 24 h soil inundation at up to the 4-leaf stage severely depressed emergence and growth, indicating the need for effective drainage at sowing of sunflower in the low-lying coastal saline zone of Bangladesh.
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Walne CH, Reddy KR. Developing Functional Relationships between Soil Waterlogging and Corn Shoot and Root Growth and Development. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10102095. [PMID: 34685904 PMCID: PMC8539431 DOI: 10.3390/plants10102095] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Revised: 09/28/2021] [Accepted: 09/30/2021] [Indexed: 05/19/2023]
Abstract
Short- and long-term waterlogging conditions impact crop growth and development, preventing crops from reaching their true genetic potential. Two experiments were conducted using a pot-culture facility to better understand soil waterlogging impacts on corn growth and development. Two corn hybrids were grown in 2017 and 2018 under ambient sunlight and temperature conditions. Waterlogging durations of 0, 2, 4, 6, 8, 10, 12, and 14 days were imposed at the V2 growth stage. Morphological (growth and development) and pigment estimation data were collected 15 days after treatments were imposed, 23 days after sowing. As waterlogging was imposed, soil oxygen rapidly decreased until reaching zero in about 8-10 days; upon the termination of the treatments, the oxygen levels recovered to the level of the 0 days treatment within 2 days. Whole-plant dry weight declined as the waterlogging duration increased, and after 2 days of waterlogging, a 44% and 27% decline was observed in experiments 1 and 2, respectively. Leaf area and root volume showed an exponential decay similar to the leaf and root dry weight. Leaf number and plant height were the least sensitive measured parameters and decreased linearly in both experiments. Root forks were the most sensitive parameter after 14 days of waterlogging in both experiments, declining by 83% and 80% in experiments 1 and 2, respectively. The data from this study improve our understanding of how corn plants react to increasing durations of waterlogging. In addition, the functional relationships generated from this study could enhance current corn simulation models for field applications.
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Environmental and Cultivation Factors Affect the Morphology, Architecture and Performance of Root Systems in Soilless Grown Plants. HORTICULTURAE 2021. [DOI: 10.3390/horticulturae7080243] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Soilless culture systems are currently one of the fastest-growing sectors in horticulture. The plant roots are confined into a specific rootzone and are exposed to environmental changes and cultivation factors. The recent scientific evidence regarding the effects of several environmental and cultivation factors on the morphology, architecture, and performance of the root system of plants grown in SCS are the objectives of this study. The effect of root restriction, nutrient solution, irrigation frequency, rootzone temperature, oxygenation, vapour pressure deficit, lighting, rootzone pH, root exudates, CO2, and beneficiary microorganisms on the functionality and performance of the root system are discussed. Overall, the main results of this review demonstrate that researchers have carried out great efforts in innovation to optimize SCS water and nutrients supply, proper temperature, and oxygen levels at the rootzone and effective plant–beneficiary microorganisms, while contributing to plant yields. Finally, this review analyses the new trends based on emerging technologies and various tools that might be exploited in a smart agriculture approach to improve root management in soilless cropping while procuring a deeper understanding of plant root–shoot communication.
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Ponnu J. Surviving hypoxia: aquaporin-like protein NIP2;1 mediates lactic acid transport. PLANT PHYSIOLOGY 2021; 186:1767-1769. [PMID: 34618117 PMCID: PMC8331126 DOI: 10.1093/plphys/kiab254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Accepted: 05/23/2021] [Indexed: 06/13/2023]
Affiliation(s)
- Jathish Ponnu
- AG Hoecker, Institute for Plant Sciences and Cluster of Excellence on Plant Sciences (CEPLAS), Biocenter, University of Cologne, Zülpicher Str. 47b, 50674 Cologne, Germany
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Li Z, Zhang M, Chow WS, Chen F, Xie Z, Fan D. Carbohydrate saving or biomass maintenance: which is the main determinant of the plant's long-term submergence tolerance? PHOTOSYNTHESIS RESEARCH 2021; 149:155-170. [PMID: 33131005 DOI: 10.1007/s11120-020-00791-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Accepted: 10/23/2020] [Indexed: 06/11/2023]
Abstract
It is hypothesized that plant submergence tolerance could be assessed from the decline of plant biomass due to submergence, as biomass integrates all eco-physiological processes leading to fitness. An alternative hypothesis stated that the consumption rate of carbohydrate is essential in differing tolerance to submergence. In the present study, the responses of biomass, biomass allocation, and carbohydrate content to simulated long-term winter submergence were assessed in four tolerant and four sensitive perennials. The four tolerant perennials occur in a newly established riparian ecosystem created by The Three Gorges Dam, China. They had 100% survival after 120 days' simulated submergence, and had full photosynthesis recovery after 30 days' re-aeration, and the photosynthetic rate was positively related to the growth during the recovery period. Tolerant perennials were characterized by higher carbohydrate levels, compared with the four sensitive perennials (0% survival) at the end of submergence. Additionally, by using a method which simulates posterior estimates, and bootstraps the confidence interval for the difference between strata means, it was found that the biomass response to post-hypoxia, rather than that to submergence, could be a reliable indicator to assess submergence tolerance. Interestingly, the differences of changes in carbohydrate content between tolerant and sensitive perennials during submergence were significant, which were distinct from the biomass response, supporting the hypothesis that tolerant perennials could sacrifice non-vital components of biomass to prioritize the saving of carbohydrates for later recovery. Our study provides some insight into the underlying mechanism(s) of perennials' tolerance to submergence in ecosystems such as temperate wetland and reservoir riparian.
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Affiliation(s)
- Zhaojia Li
- College of Forestry, Beijing Forestry University, Beijing, 100083, China
- Key Laboratory of State Forestry Administration on Tropical Forestry Research, Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou, 510520, China
| | - Mengmeng Zhang
- College of Life Science, Heilongjiang University, Ha'erbin, 150080, China
| | - Wah Soon Chow
- Division of Plant Sciences, Research School of Biology, The Australian National University, Acton, ACT, 2601, Australia
| | - Fangqing Chen
- College of Chemistry and Life Science, China Three Gorges University, Yichang, 443000, Hubei, China
| | - Zongqiang Xie
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Dayong Fan
- College of Forestry, Beijing Forestry University, Beijing, 100083, China.
- Division of Plant Sciences, Research School of Biology, The Australian National University, Acton, ACT, 2601, Australia.
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Sarangi S, Swain H, Adak T, Bhattacharyya P, Mukherjee AK, Kumar G, Mehetre ST. Trichoderma-mediated rice straw compost promotes plant growth and imparts stress tolerance. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:44014-44027. [PMID: 33846916 DOI: 10.1007/s11356-021-13701-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Accepted: 03/24/2021] [Indexed: 06/12/2023]
Abstract
Rice straw burning is causing huge economic losses and environmental hazards. Microbial mediated ex situ composting could be a viable solution which would not only reduce the straw burning but also will enrich nutrition to the soil. Strains of Trichoderma isolated from tree bark were tested to decompose rice straw efficiently, and the Trichoderma-mediated rice straw compost was used subsequently to improve rice growth. Two isolates of Trichoderma reesei (NRRIT-26 and NRRIT-27) decomposed the straw by producing higher decomposing enzymes, like total cellulase (≥ 1.87 IU mL-1), endoglucanase (≥ 0.75 IU mL-1), xylanase (≥ 163.49 nkat mL-1), and laccase (≥ 11.75 IU mL-1). Trichoderma decomposed rice straw compost had higher nutrient contents (1.97% N, 2.04% K, and 0.88% P) and optimum C/N ratio (28:2) as compared to control. The Trichoderma decomposed rice straw as a nutrient reduced the mean germination time (2.2 days as compared to 4 days in control) and enhanced the seedling vigor and total chlorophyll content in rice. Expression of defense enzymes, like catalase (≥ 200% both in shoot and root), peroxidase (≥ 180% in root and ≥ 300% in shoot), and superoxide dismutase (≥ 160% in root and ≥ 90% in shoot), were higher in treated plants as compared to control indicating higher stress tolerance ability to crops. We conclude that the Trichoderma-mediated rice straw management is a viable option and has the potential to reduce straw burning, and at the same time, the compost could enrich soil fertility and impart intrinsic stress tolerance to rice.
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Affiliation(s)
- Sarmistha Sarangi
- Molecular Plant Pathology Laboratory, Division of Crop Protection, ICAR-National Rice Research Institute, Cuttack, Odisha, 753006, India
| | - Harekrushna Swain
- Molecular Plant Pathology Laboratory, Division of Crop Protection, ICAR-National Rice Research Institute, Cuttack, Odisha, 753006, India
| | - Totan Adak
- Molecular Plant Pathology Laboratory, Division of Crop Protection, ICAR-National Rice Research Institute, Cuttack, Odisha, 753006, India
| | - Pratap Bhattacharyya
- Division of Crop Production, ICAR-National Rice Research Institute, Cuttack, Odisha, 753006, India
| | - Arup K Mukherjee
- Molecular Plant Pathology Laboratory, Division of Crop Protection, ICAR-National Rice Research Institute, Cuttack, Odisha, 753006, India.
| | - Gaurav Kumar
- Division of Crop Physiology and Biochemistry, ICAR-National Rice Research Institute, Cuttack, Odisha, 753006, India
| | - Sayaji T Mehetre
- Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai, 400085, India
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Readyhough T, Neher DA, Andrews T. Organic Amendments Alter Soil Hydrology and Belowground Microbiome of Tomato ( Solanum lycopersicum). Microorganisms 2021; 9:microorganisms9081561. [PMID: 34442640 PMCID: PMC8399880 DOI: 10.3390/microorganisms9081561] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Revised: 07/08/2021] [Accepted: 07/19/2021] [Indexed: 01/04/2023] Open
Abstract
Manure-derived organic amendments are a cost-effective tool that provide many potential benefits to plant and soil health including fertility, water retention, and disease suppression. A greenhouse experiment was conducted to evaluate how dairy manure compost (DMC), dairy manure compost-derived vermicompost (VC), and dehydrated poultry manure pellets (PP) impact the tripartite relationship among plant growth, soil physiochemical properties, and microbial community composition. Of tomato plants with manure-derived fertilizers amendments, only VC led to vigorous growth through the duration of the experiment, whereas DMC had mixed impacts on plant growth and PP was detrimental. Organic amendments increased soil porosity and soil water holding capacity, but delayed plant maturation and decreased plant biomass. Composition of bacterial communities were affected more by organic amendment than fungal communities in all microhabitats. Composition of communities outside roots (bulk soil, rhizosphere, rhizoplane) contrasted those within roots (endosphere). Distinct microbial communities were detected for each treatment, with an abundance of Massilia, Chryseolinea, Scedosporium, and Acinetobacter distinguishing the control, vermicompost, dairy manure compost, and dehydrated poultry manure pellet treatments, respectively. This study suggests that plant growth is affected by the application of organic amendments not only because of the soil microbial communities introduced, but also due to a synergistic effect on the physical soil environment. Furthermore, there is a strong interaction between root growth and the spatial heterogeneity of soil and root-associated microbial communities.
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Benkeblia N. Physiological and Biochemical Response of Tropical Fruits to Hypoxia/Anoxia. FRONTIERS IN PLANT SCIENCE 2021; 12:670803. [PMID: 34335647 PMCID: PMC8322732 DOI: 10.3389/fpls.2021.670803] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Accepted: 06/23/2021] [Indexed: 06/13/2023]
Abstract
Aerobic respiration and oxygen consumption are indicators of routine metabolic rate, and dissolved oxygen in plant tissues is one of the most important environmental factors affecting their survival. The reduction of available O2 leads to hypoxia which causes a limitation of the oxidative phosphorylation; when O2 is absent, tissues generate ATP by activating the fermentative glycolysis to sustain glycolysis in the absence of mitochondrial respiration, which results in the production of lactate. Overall, hypoxia was reported to often decrease the respiration rate (O2 uptake) and delay the climacteric rise of ethylene in climacteric fruits by inhibiting action, thus delaying their ripening. Much research has been done on the application of postharvest hypoxia and anoxia treatment to temperate fresh crops (controlled or modified atmosphere), however, very few reported on tropical commodities. Indeed, the physiological mode of action of low or absence of oxygen in fresh crops is not well understood; and the physiological and biochemical bases of the effects low or absence of O2 are also yet to be clarified. Recent investigations using omics technologies, however, have provided useful information on the response of fresh fruits and vegetables to this abiotic stress. The aims of this review are to (i) report on the oxygen exchange in the crops tissue, (ii) discuss the metabolic responses to hypoxia and anoxia, and (iii) report the physiological and biochemical responses of crops tissues to these abiotic stresses and the potential benefits of these environmental conditions.
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Primka EJ, Adams TS, Buck A, Eissenstat DM. Topographical shifts in fine root lifespan in a mixed, mesic temperate forest. PLoS One 2021; 16:e0254672. [PMID: 34260660 PMCID: PMC8279377 DOI: 10.1371/journal.pone.0254672] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Accepted: 06/30/2021] [Indexed: 11/18/2022] Open
Abstract
Root lifespan, often is estimated in landscape- and ecosystem-level carbon models using linear approximations. In water manipulation experiments, fine root lifespan can vary with soil water content. Soil water content is generally structured by complex topography, which is largely unaccounted for in landscape- and ecosystem-scale carbon models. Topography governs the range of soil water content experienced by roots which may impact their lifespan. We hypothesized that root lifespan varied nonlinearly across a temperate, mesic, forested catchment due to differences in soil water content associated with topographic position. We expected regions of the landscape that were too wet or too dry would have soils that were not optimal for roots and thus result in shorter root lifespans. Specifically, we hypothesized that root lifespan would be longest in areas that consistently had soil water content in the middle of the soil water content spectrum, while in soils at either very low or very high soil water content, root lifespan would be relatively short. We tested this hypothesis by collecting and analyzing two years of minirhizotron and soil moisture data in plots widely distributed in the Shale Hills catchment of the Susquehanna-Shale Hills Critical Zone Observatory in Pennsylvania. We found that fine root lifespans were longer in traditionally wetter topographic regions, but detected no short term (biweekly) effect of soil moisture on root lifespan. Additionally, depth in soil, soil series, slope face orientation, and season of birth strongly affected root lifespans across the catchment. In contrast, lifespan was unaffected by root diameter or mycorrhizal association. Failure to account for these variables could result in erroneous estimates of fine root lifespan and, consequentially, carbon flux in temperate forested regions.
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Affiliation(s)
- Edward J. Primka
- Department of Ecosystem Science and Management, The Pennsylvania State University, University Park, Pennsylvania, United States of America
- Graduate Program in Ecology, The Pennsylvania State University, University Park, Pennsylvania, United States of America
| | - Thomas S. Adams
- Department of Plant Science, The Pennsylvania State University, University Park, Pennsylvania, United States of America
| | - Alexandra Buck
- Department of Ecosystem Science and Management, The Pennsylvania State University, University Park, Pennsylvania, United States of America
| | - David M. Eissenstat
- Department of Ecosystem Science and Management, The Pennsylvania State University, University Park, Pennsylvania, United States of America
- Graduate Program in Ecology, The Pennsylvania State University, University Park, Pennsylvania, United States of America
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Tamang BG, Li S, Rajasundaram D, Lamichhane S, Fukao T. Overlapping and stress-specific transcriptomic and hormonal responses to flooding and drought in soybean. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 107:100-117. [PMID: 33864651 DOI: 10.1111/tpj.15276] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Revised: 02/19/2021] [Accepted: 04/08/2021] [Indexed: 06/12/2023]
Abstract
Flooding and drought are serious constraints that reduce crop productivity worldwide. Previous studies identified genes conferring tolerance to both water extremes in various plants. However, overlapping responses to flooding and drought at the genome-scale remain obscure. Here, we defined overlapping and stress-specific transcriptomic and hormonal responses to submergence, drought and recovery from these stresses in soybean (Glycine max). We performed comparative RNA-sequencing and hormone profiling, identifying genes, hormones and biological processes that are differentially regulated in an overlapping or stress-specific manner. Overlapping responses included positive regulation of trehalose and sucrose metabolism and negative regulation of cellulose, tubulin, photosystem II and I, and chlorophyll biosynthesis, facilitating the economization of energy reserves under both submergence and drought. Additional energy-consuming pathways were restricted in a stress-specific manner. Downregulation of distinct pathways for energy saving under each stress suggests energy-consuming processes that are relatively unnecessary for each stress adaptation are turned down. Our newly developed transcriptomic-response analysis revealed that abscisic acid and ethylene responses were activated in common under both stresses, whereas stimulated auxin response was submergence-specific. The energy-saving strategy is the key overlapping mechanism that underpins adaptation to both submergence and drought in soybean. Abscisic acid and ethylene are candidate hormones that coordinate transcriptomic energy-saving processes under both stresses. Auxin may be a signaling component that distinguishes submergence-specific regulation of the stress response.
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Affiliation(s)
- Bishal G Tamang
- Virginia Tech, School of Plant and Environmental Sciences, Blacksburg, VA, 24061, USA
- Department of Plant Biology and Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Song Li
- Virginia Tech, School of Plant and Environmental Sciences, Blacksburg, VA, 24061, USA
| | - Dhivyaa Rajasundaram
- Virginia Tech, School of Plant and Environmental Sciences, Blacksburg, VA, 24061, USA
- Department of Pediatrics, University of Pittsburg, Pittsburg, PA, 15224, USA
| | - Suman Lamichhane
- Virginia Tech, School of Plant and Environmental Sciences, Blacksburg, VA, 24061, USA
| | - Takeshi Fukao
- Virginia Tech, School of Plant and Environmental Sciences, Blacksburg, VA, 24061, USA
- Department of Bioscience and Biotechnology, Fukui Prefectural University, Eiheiji, Fukui, 910-1195, Japan
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Accumulation Dynamics of Transcripts and Proteins of Cold-Responsive Genes in Fragaria vesca Genotypes of Differing Cold Tolerance. Int J Mol Sci 2021; 22:ijms22116124. [PMID: 34200124 PMCID: PMC8201005 DOI: 10.3390/ijms22116124] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 05/13/2021] [Accepted: 05/27/2021] [Indexed: 11/29/2022] Open
Abstract
Identifying and characterizing cold responsive genes in Fragaria vesca associated with or responsible for low temperature tolerance is a vital part of strawberry cultivar development. In this study we have investigated the transcript levels of eight genes, two dehydrin genes, three putative ABA-regulated genes, two cold–inducible CBF genes and the alcohol dehydrogenase gene, extracted from leaf and crown tissues of three F. vesca genotypes that vary in cold tolerance. Transcript levels of the CBF/DREB1 transcription factor FvCBF1E exhibited stronger cold up-regulation in comparison to FvCBF1B.1 in all genotypes. Transcripts of FvADH were highly up-regulated in both crown and leaf tissues from all three genotypes. In the ‘ALTA’ genotype, FvADH transcripts were significantly higher in leaf than crown tissues and more than 10 to 20-fold greater than in the less cold-tolerant ‘NCGR1363’ and ‘FDP817’ genotypes. FvGEM, containing the conserved ABRE promoter element, transcript was found to be cold-regulated in crowns. Direct comparison of the kinetics of transcript and protein accumulation of dehydrins was scrutinized. In all genotypes and organs, the changes of XERO2 transcript levels generally preceded protein changes, while levels of COR47 protein accumulation preceded the increases in COR47 RNA in ‘ALTA’ crowns.
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Santos CS, Dalmolin AC, Schilling AC, Santos MS, Schaffer B, Mielke MS. Root deformation affects mineral nutrition but not leaf gas exchange and growth of Genipa americana seedlings during the recovery phase after soil flooding. BRAZ J BIOL 2021; 82:e234018. [PMID: 34076162 DOI: 10.1590/1519-6984.234018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2020] [Accepted: 08/20/2020] [Indexed: 11/21/2022] Open
Abstract
Root deformation (RD) caused by errors in the pricking out process are irreversible and very difficult to detect in container-grown seedlings at the time of planting in the field. The objective of this study was to evaluate the effects of RD on leaf gas exchange, growth, biomass allocation and mineral nutrition of G. americana seedlings during the recovery phase after soil flooding. Four-months-old seedlings, with and without RD, were flooded for 42 days and their recovery was evaluated 28 days after soil drainage. There were no significant interactions between RD and soil flooding for all leaf gas exchange, growth and mineral nutrition after soil drainage, with the exception of leaf P concentrations. In plants with no RD, the P concentration in leaves of non-flooded plants was significantly higher than that of plants with RD. Soil flooding and RD did not influence leaf or root N concentrations or whole-plant N content. RD increased the K concentration in the roots, but not in the leaves. Changes in the nutrient concentrations in leaves and roots indicate that RD may affect physiological performance of seedlings after planting in the field.
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Affiliation(s)
- C S Santos
- Universidade Estadual de Santa Cruz - UESC, Departamento de Ciências Biológicas, Ilhéus, BA, Brasil
| | - A C Dalmolin
- Universidade Federal do Sul da Bahia - UFSB, Centro de Formação em Ciências Agroflorestais, Ilhéus, BA, Brasil
| | - A C Schilling
- Universidade Estadual de Santa Cruz - UESC, Departamento de Ciências Exatas e Tecnológicas, Ilhéus, BA, Brasil
| | - M S Santos
- Universidade Estadual de Santa Cruz - UESC, Departamento de Ciências Biológicas, Ilhéus, BA, Brasil
| | - B Schaffer
- University of Florida, Institute of Food and Agricultural Sciences - IFAS, Tropical Research and Education Center, Homestead, FL, USA
| | - M S Mielke
- Universidade Estadual de Santa Cruz - UESC, Departamento de Ciências Biológicas, Ilhéus, BA, Brasil
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46
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Mahajan M, Thakur BK, Pal PK. Moisture stress and nitrogen availability modulate the secondary metabolite profiles, enzymatic activity, and physiological and agronomic traits of Stevia rebaudiana. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 162:56-68. [PMID: 33667967 DOI: 10.1016/j.plaphy.2021.02.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Accepted: 02/16/2021] [Indexed: 06/12/2023]
Abstract
Performances of crops are mainly influenced by frost, heat and availability of soil-water and nitrogen (N). However, little is known about the interaction between soil-water and N on Stevia rebaudiana. Thus, a field experiment was conducted with fifteen treatment combinations comprising three levels of soil-moisture (irrigation at 20, 50 and 75 kPa soil-water-potential) and five N levels (0-140 kg ha-1) to understand how soil-moisture and N influence growth, physiological and biochemical activities of stevia. Plants irrigated at 50 kPa registered 6.3-18.9% and 20.7-21.2% higher dry leaf yield compared with 20 and 75 kPa, respectively. No significant (P ≥ 0.05) differences in concentrations of total steviol glycosides (TSGs) in leaf were found due to moisture regimes. Total soluble sugars (TSS), proline, total phenols were decreased significantly (P ≤ 0.05) with plants irrigated at 20 kPa whereas SOD, CAT, and POX were decreased at both excessive and deficit water conditions. Photosynthetic rate (PN) and stomatal conductance (gs) decreased with plant irrigated at 75 kPa. Anatomical changes in leaf were also observed due to different moisture regimes. Among the N levels, 105 kg ha-1 registered approximately 50-53% higher dry leaf yield compared with control (0 kg N ha-1), irrespective of irrigation level. Excess (140 kg ha-1) and shortage of N significantly decreased the PN, gs, and enzyme activities. Concentrations of TSS and TSGs were higher with N at 105 and 70 kg ha-1, respectively. Our results emphasize that irrigation at 50 kPa and application of N 105 kg ha-1 is the suitable combination for sustainable cultivation of stevia.
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Affiliation(s)
- Mitali Mahajan
- Division of Agrotechnology, Council of Scientific and Industrial Research-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Post Box No. 6, Palampur, 176 061, HP, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Babit Kumar Thakur
- Division of Agrotechnology, Council of Scientific and Industrial Research-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Post Box No. 6, Palampur, 176 061, HP, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Probir Kumar Pal
- Division of Agrotechnology, Council of Scientific and Industrial Research-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Post Box No. 6, Palampur, 176 061, HP, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
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Konkina A, Klepadlo M, Lakehal A, Zein ZE, Krokida A, Botros M, Iakovidis M, Chernobavskiy P, Elfatih Zerroumda M, Tsanakas G, Petrakis N, Dourou AM, Kalaitzis P. An Arabidopsis Prolyl 4 Hydroxylase Is Involved in the Low Oxygen Response. FRONTIERS IN PLANT SCIENCE 2021; 12:637352. [PMID: 33790927 PMCID: PMC8006943 DOI: 10.3389/fpls.2021.637352] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Accepted: 02/09/2021] [Indexed: 06/12/2023]
Abstract
Plant responses to flooding, submergence and waterlogging are important for adaptation to climate change environments. Therefore, the characterization of the molecular mechanisms activated under hypoxic and anoxic conditions might lead to low oxygen resilient crops. Although in mammalian systems prolyl 4 hydroxylases (P4Hs) are involved in the oxygen sensing pathway, their role in plants under low oxygen has not been extensively investigated. In this report, an Arabidopsis AtP4H3 T-DNA knock out mutant line showed higher sensitivity to anoxic treatment possibly due to lower induction of the fermentation pathway genes, ADH and PDC1, and of sucrose synthases, SUS1 and SUS4. This sensitivity to anoxia was accompanied by lower protein levels of AGPs-bound epitopes such as LM14 in the mutant line and induction of extensins-bound epitopes, while the expression levels of the majority of the AGPs genes were stable throughout a low oxygen time course. The lower AGPs content might be related to altered frequency of proline hydroxylation occurrence in the p4h3 line. These results indicate active involvement of proline hydroxylation, a post-translational modification, to low oxygen response in Arabidopsis.
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48
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Sanclemente MA, Ma F, Liu P, Della Porta A, Singh J, Wu S, Colquhoun T, Johnson T, Guan JC, Koch KE. Sugar modulation of anaerobic-response networks in maize root tips. PLANT PHYSIOLOGY 2021; 185:295-317. [PMID: 33721892 PMCID: PMC8133576 DOI: 10.1093/plphys/kiaa029] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 10/28/2020] [Indexed: 05/11/2023]
Abstract
Sugar supply is a key component of hypoxia tolerance and acclimation in plants. However, a striking gap remains in our understanding of mechanisms governing sugar impacts on low-oxygen responses. Here, we used a maize (Zea mays) root-tip system for precise control of sugar and oxygen levels. We compared responses to oxygen (21 and 0.2%) in the presence of abundant versus limited glucose supplies (2.0 and 0.2%). Low-oxygen reconfigured the transcriptome with glucose deprivation enhancing the speed and magnitude of gene induction for core anaerobic proteins (ANPs). Sugar supply also altered profiles of hypoxia-responsive genes carrying G4 motifs (sources of regulatory quadruplex structures), revealing a fast, sugar-independent class followed more slowly by feast-or-famine-regulated G4 genes. Metabolite analysis showed that endogenous sugar levels were maintained by exogenous glucose under aerobic conditions and demonstrated a prominent capacity for sucrose re-synthesis that was undetectable under hypoxia. Glucose abundance had distinctive impacts on co-expression networks associated with ANPs, altering network partners and aiding persistence of interacting networks under prolonged hypoxia. Among the ANP networks, two highly interconnected clusters of genes formed around Pyruvate decarboxylase 3 and Glyceraldehyde-3-phosphate dehydrogenase 4. Genes in these clusters shared a small set of cis-regulatory elements, two of which typified glucose induction. Collective results demonstrate specific, previously unrecognized roles of sugars in low-oxygen responses, extending from accelerated onset of initial adaptive phases by starvation stress to maintenance and modulation of co-expression relationships by carbohydrate availability.
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Affiliation(s)
- Maria-Angelica Sanclemente
- Plant Molecular and Cellular Biology, University of Florida, Gainesville, Florida 32611, USA
- Horticultural Sciences, University of Florida, Gainesville, Florida 32611, USA
- Plant Ecophysiology, Institute of Environmental Biology, Utrecht University, Utrecht 3584CH, The Netherlands
- Author for communication:
| | - Fangfang Ma
- Plant Molecular and Cellular Biology, University of Florida, Gainesville, Florida 32611, USA
- Horticultural Sciences, University of Florida, Gainesville, Florida 32611, USA
- Horticultural Sciences, Shandong Agricultural University, Taian, Shandong, China
| | - Peng Liu
- Plant Molecular and Cellular Biology, University of Florida, Gainesville, Florida 32611, USA
- Horticultural Sciences, University of Florida, Gainesville, Florida 32611, USA
- Donald Danforth Plant Science Center, St. Louis, Missouri 63132, USA
| | - Adriana Della Porta
- Plant Molecular and Cellular Biology, University of Florida, Gainesville, Florida 32611, USA
| | - Jugpreet Singh
- Plant Molecular and Cellular Biology, University of Florida, Gainesville, Florida 32611, USA
- Horticultural Sciences, University of Florida, Gainesville, Florida 32611, USA
| | - Shan Wu
- Plant Molecular and Cellular Biology, University of Florida, Gainesville, Florida 32611, USA
| | - Thomas Colquhoun
- Plant Molecular and Cellular Biology, University of Florida, Gainesville, Florida 32611, USA
- Environmental Horticulture, University of Florida, Gainesville, Florida, USA
| | - Timothy Johnson
- Plant Molecular and Cellular Biology, University of Florida, Gainesville, Florida 32611, USA
- Environmental Horticulture, University of Florida, Gainesville, Florida, USA
| | - Jiahn-Chou Guan
- Horticultural Sciences, University of Florida, Gainesville, Florida 32611, USA
| | - Karen E Koch
- Plant Molecular and Cellular Biology, University of Florida, Gainesville, Florida 32611, USA
- Horticultural Sciences, University of Florida, Gainesville, Florida 32611, USA
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49
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Sou HD, Masumori M, Yamanoshita T, Tange T. Primary and secondary aerenchyma oxygen transportation pathways of Syzygium kunstleri (King) Bahadur & R. C. Gaur adventitious roots in hypoxic conditions. Sci Rep 2021; 11:4520. [PMID: 33633329 PMCID: PMC7907123 DOI: 10.1038/s41598-021-84183-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2020] [Accepted: 02/09/2021] [Indexed: 11/08/2022] Open
Abstract
Some plant species develop aerenchyma to avoid anaerobic environments. In Syzygium kunstleri (King) Bahadur & R. C. Gaur, both primary and secondary aerenchyma were observed in adventitious roots under hypoxic conditions. We clarified the function of and relationship between primary and secondary aerenchyma. To understand the function of primary and secondary aerenchyma in adventitious roots, we measured changes in primary and secondary aerenchyma partial pressure of oxygen (pO2) after injecting nitrogen (N2) into the stem 0-3 cm above the water surface using Clark-type oxygen microelectrodes. Following N2 injection, a decrease in pO2 was observed in the primary aerenchyma, secondary aerenchyma, and rhizosphere. Oxygen concentration in the primary aerenchyma, secondary aerenchyma, and rhizosphere also decreased after the secondary aerenchyma was removed from near the root base. The primary and secondary aerenchyma are involved in oxygen transport, and in adventitious roots, they participate in the longitudinal movement of oxygen from the root base to root tip. As cortex collapse occurs from secondary growth, the secondary aerenchyma may support or replace the primary aerenchyma as the main oxygen transport system under hypoxic conditions.
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Affiliation(s)
- Hong-Duck Sou
- Urban Forest Research Center, National Institute of Forest Science, Seoul, 02455, South Korea.
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan.
| | - Masaya Masumori
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Takashi Yamanoshita
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Takeshi Tange
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan
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50
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Xuan L, Hua J, Zhang F, Wang Z, Pei X, Yang Y, Yin Y, Creech DL. Identification and Functional Analysis of ThADH1 and ThADH4 Genes Involved in Tolerance to Waterlogging Stress in Taxodium hybrid 'Zhongshanshan 406'. Genes (Basel) 2021; 12:genes12020225. [PMID: 33557242 PMCID: PMC7913975 DOI: 10.3390/genes12020225] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Revised: 01/30/2021] [Accepted: 02/02/2021] [Indexed: 01/23/2023] Open
Abstract
The Taxodium hybrid 'Zhongshanshan 406' (T. hybrid 'Zhongshanshan 406') [Taxodium mucronatum Tenore × Taxodium distichum (L.). Rich] has an outstanding advantage in flooding tolerance and thus has been widely used in wetland afforestation in China. Alcohol dehydrogenase genes (ADHs) played key roles in ethanol metabolism to maintain energy supply for plants in low-oxygen conditions. Two ADH genes were isolated and characterized-ThADH1 and ThADH4 (GenBank ID: AWL83216 and AWL83217-basing on the transcriptome data of T. hybrid 'Zhongshanshan 406' grown under waterlogging stress. Then the functions of these two genes were investigated through transient expression and overexpression. The results showed that the ThADH1 and ThADH4 proteins both fall under ADH III subfamily. ThADH1 was localized in the cytoplasm and nucleus, whereas ThADH4 was only localized in the cytoplasm. The expression of the two genes was stimulated by waterlogging and the expression level in roots was significantly higher than those in stems and leaves. The respective overexpression of ThADH1 and ThADH4 in Populus caused the opposite phenotype, while waterlogging tolerance of the two transgenic Populus significantly improved. Collectively, these results indicated that genes ThADH1 and ThADH4 were involved in the tolerance and adaptation to anaerobic conditions in T. hybrid 'Zhongshanshan 406'.
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Affiliation(s)
- Lei Xuan
- Jiangsu Province Engineering Research Center of Taxodium Rich. Germplasm Innovation and Propagation, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem, Sun Yat-Sen), Nanjing 210037, China; (L.X.); (F.Z.); (Z.W.); (X.P.); (Y.Y.); (Y.Y.)
| | - Jianfeng Hua
- Jiangsu Province Engineering Research Center of Taxodium Rich. Germplasm Innovation and Propagation, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem, Sun Yat-Sen), Nanjing 210037, China; (L.X.); (F.Z.); (Z.W.); (X.P.); (Y.Y.); (Y.Y.)
- Correspondence: ; Tel.: +86-25-8434-7069
| | - Fan Zhang
- Jiangsu Province Engineering Research Center of Taxodium Rich. Germplasm Innovation and Propagation, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem, Sun Yat-Sen), Nanjing 210037, China; (L.X.); (F.Z.); (Z.W.); (X.P.); (Y.Y.); (Y.Y.)
| | - Zhiquan Wang
- Jiangsu Province Engineering Research Center of Taxodium Rich. Germplasm Innovation and Propagation, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem, Sun Yat-Sen), Nanjing 210037, China; (L.X.); (F.Z.); (Z.W.); (X.P.); (Y.Y.); (Y.Y.)
| | - Xiaoxiao Pei
- Jiangsu Province Engineering Research Center of Taxodium Rich. Germplasm Innovation and Propagation, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem, Sun Yat-Sen), Nanjing 210037, China; (L.X.); (F.Z.); (Z.W.); (X.P.); (Y.Y.); (Y.Y.)
| | - Ying Yang
- Jiangsu Province Engineering Research Center of Taxodium Rich. Germplasm Innovation and Propagation, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem, Sun Yat-Sen), Nanjing 210037, China; (L.X.); (F.Z.); (Z.W.); (X.P.); (Y.Y.); (Y.Y.)
| | - Yunlong Yin
- Jiangsu Province Engineering Research Center of Taxodium Rich. Germplasm Innovation and Propagation, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem, Sun Yat-Sen), Nanjing 210037, China; (L.X.); (F.Z.); (Z.W.); (X.P.); (Y.Y.); (Y.Y.)
| | - David L. Creech
- Arthur Temple College of Forestry and Agriculture, Stephen F. Austin State University, Nacogdoches, TX 75962, USA;
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