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Liu Y, Qin R, Jia X. Design and construction of an artificial labor-division consortium for phenanthrene degradation with three-functional modules. CHEMOSPHERE 2024; 366:143439. [PMID: 39357657 DOI: 10.1016/j.chemosphere.2024.143439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 09/25/2024] [Accepted: 09/28/2024] [Indexed: 10/04/2024]
Abstract
Polycyclic Aromatic Hydrocarbons (PAHs) are highly toxic organic pollutants. Phenanthrene often serves as a model compound for studying PAHs biodegradation. In this work, we firstly engineered Escherichia coli M01 containing seven phenanthrene degradation genes and combined it with existing engineered strains E. coli M2 and M3 to form an artificial three-bacteria consortium, named M0123, which exhibited a degradation ratio of 64.66% for 100 mg/L of phenanthrene over 8 days. Subsequently, we constructed engineered Pseudomonas putida KTRL02 which could produce 928.49 mg/L rhamnolipids and integrated it with M0123, forming a four-bacteria consortium with an impressive 81.62% phenanthrene degradation ratio. Assessment of extracellular adenosine levels during the degradation process indicated high cellular energy demand in the four-bacteria consortium. Then, we introduced Bacillus subtilis RH33, a riboflavin-producing strain, as an energy-supplying bacterium, to create a five-bacteria consortium, which exhibited an 88.19% degradation ratio for phenanthrene. The NADH/NAD+ ratio in the five-bacteria consortium during the degradation process was monitored, which was consistently higher than that of the four-bacteria consortium over the eight-day period, indicating a higher overall intracellular reduction capacity. Furthermore, the five-bacteria consortium displayed good tolerance to phenanthrene, even achieving a degradation ratio of 79.38% for 500 mg/L of phenanthrene. This study demonstrates that designing and constructing artificial consortia from the functional perspective and various angles can effectively enhance the degradation of phenanthrene after the addition of the energy-supplying bacterium. This study demonstrates that designing and constructing artificial labor-division consortia from the functional perspective and various angles can effectively enhance the degradation of phenanthrene.
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Affiliation(s)
- Yiyang Liu
- Department of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Ruolin Qin
- Department of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Xiaoqiang Jia
- Department of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China; Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300350, China.
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2
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Sanchez Ramirez L, Dragotakes Q, Casadevall A. A food color-based colorimetric assay for Cryptococcus neoformans laccase activity. Microbiol Spectr 2024; 12:e0044224. [PMID: 38869282 PMCID: PMC11302723 DOI: 10.1128/spectrum.00442-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Accepted: 05/09/2024] [Indexed: 06/14/2024] Open
Abstract
Cryptococcus neoformans is a fungal pathogen that causes cryptococcosis primarily in immunocompromised patients, such as those with HIV/AIDS. One survival mechanism of C. neoformans during infection is melanin production, which catalyzed by laccase and protects fungal cells against immune attack. Hence, the comparative assessment of laccase activity is useful for characterizing cryptococcal strains. We serendipitously observed that culturing C. neoformans with food coloring resulted in degradation of some dyes with phenolic structures. Consequently, we investigated the color changes for the food dyes metabolized by C. neoformans laccase and by using this effect explored the development of a colorimetric assay to measure laccase activity. We developed several versions of a food dye-based colorimetric laccase assay that can be used to compare the relative laccase activities between different C. neoformans strains. We found that phenolic color degradation was glucose-dependent, which may reflect changes in the reduction properties of the media. Our food color-based colorimetric assay has several advantages, including lower cost, irreversibility, and not requiring constant monitoring , over the commonly used 2,2'-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) assay for determining laccase activity. This method has potential applications to bioremediation of water pollutants in addition to its use in determining laccase virulence factor expression.IMPORTANCECryptococcus neoformans is present in the environment, and while infection is common, disease occurs mostly in immunocompromised individuals. C. neoformans infection in the lungs results in symptoms like pneumonia, and consequently, cryptococcal meningitis occurs if the fungal infection spreads to the brain. The laccase enzyme catalyzes the melanization reaction that serves as a virulence factor for C. neoformans. Developing a simple and less costly assay to determine the laccase activity in C. neoformans strains can be useful for a variety of procedures ranging from studying the relative virulence of cryptococci to environmental pollution studies.
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Affiliation(s)
- Lia Sanchez Ramirez
- Department of Molecular and Cell Biology, Johns Hopkins University, Baltimore, Maryland, USA
| | - Quigly Dragotakes
- Department of Molecular Microbiology and Immunology, Johns Hopkins School of Public Health, Baltimore, Maryland, USA
| | - Arturo Casadevall
- Department of Molecular Microbiology and Immunology, Johns Hopkins School of Public Health, Baltimore, Maryland, USA
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3
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Alidoosti F, Giyahchi M, Moien S, Moghimi H. Unlocking the potential of soil microbial communities for bioremediation of emerging organic contaminants: omics-based approaches. Microb Cell Fact 2024; 23:210. [PMID: 39054471 PMCID: PMC11271216 DOI: 10.1186/s12934-024-02485-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Accepted: 07/18/2024] [Indexed: 07/27/2024] Open
Abstract
The remediation of emerging contaminants presents a pressing environmental challenge, necessitating innovative approaches for effective mitigation. This review article delves into the untapped potential of soil microbial communities in the bioremediation of emerging contaminants. Bioremediation, while a promising method, often proves time-consuming and requires a deep comprehension of microbial intricacies for enhancement. Given the challenges presented by the inability to culture many of these microorganisms, conventional methods are inadequate for achieving this goal. While omics-based methods provide an innovative approach to understanding the fundamental aspects, processes, and connections among microorganisms that are essential for improving bioremediation strategies. By exploring the latest advancements in omics technologies, this review aims to shed light on how these approaches can unlock the hidden capabilities of soil microbial communities, paving the way for more efficient and sustainable remediation solutions.
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Affiliation(s)
- Fatemeh Alidoosti
- Department of Microbiology, School of Biology, College of Science, University of Tehran, Tehran, Iran
| | - Minoo Giyahchi
- Department of Microbiology, School of Biology, College of Science, University of Tehran, Tehran, Iran
| | - Shabnam Moien
- Department of Microbiology, School of Biology, College of Science, University of Tehran, Tehran, Iran
| | - Hamid Moghimi
- Department of Microbiology, School of Biology, College of Science, University of Tehran, Tehran, Iran.
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4
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Mutmainna I, Gareso PL, Suryani S, Tahir D. Microplastics from petroleum-based plastics and their effects: A systematic literature review and science mapping of global bioplastics production. INTEGRATED ENVIRONMENTAL ASSESSMENT AND MANAGEMENT 2024. [PMID: 38980276 DOI: 10.1002/ieam.4976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 04/27/2024] [Accepted: 06/10/2024] [Indexed: 07/10/2024]
Abstract
The use of bioplastics is a new strategy for reducing microplastic (MP) waste caused by petroleum-based plastics. This problem has received increased attention worldwide, leading to the development of large-scale bioplastic plants. The large amount of MPs in aquatic and terrestrial environments and the atmosphere has raised global concern. This article delves into the profound environmental impact of the increasing use of petroleum-based plastics, which contribute significantly to plastic waste and, as a consequence, to the increase in MPs. We conducted a comprehensive analysis to identify countries that are at the forefront of efforts to produce bioplastics to reduce MP pollution. In this article, we explain the development, degradation processes, and research trends of bioplastics derived from biological materials such as starch, chitin, chitosan, and polylactic acid (PLA). The findings pinpoint the top 10 countries demonstrating a strong commitment to reducing MP pollution through bioplastics. These nations included the United States, China, Spain, Canada, Italy, India, the United Kingdom, Malaysia, Belgium, and the Netherlands. This study underscores the technical and economic obstacles to large-scale bioplastic production. Integr Environ Assess Manag 2024;00:1-20. © 2024 SETAC.
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Affiliation(s)
| | | | - Sri Suryani
- Department of Physics, Hasanuddin University, Makassar, Indonesia
| | - Dahlang Tahir
- Department of Physics, Hasanuddin University, Makassar, Indonesia
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Saeed H, Padmesh S, Singh A, Nandy A, Singh SP, Deshwal RK. Impact of veterinary pharmaceuticals on environment and their mitigation through microbial bioremediation. Front Microbiol 2024; 15:1396116. [PMID: 39040911 PMCID: PMC11262132 DOI: 10.3389/fmicb.2024.1396116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Accepted: 06/27/2024] [Indexed: 07/24/2024] Open
Abstract
Veterinary medications are constantly being used for the diagnosis, treatment, and prevention of diseases in livestock. However, untreated veterinary drug active compounds are interminably discharged into numerous water bodies and terrestrial ecosystems, during production procedures, improper disposal of empty containers, unused medication or animal feed, and treatment procedures. This exhaustive review describes the different pathways through which veterinary medications enter the environment, discussing the role of agricultural practices and improper disposal methods. The detrimental effects of veterinary drug compounds on aquatic and terrestrial ecosystems are elaborated with examples of specific veterinary drugs and their known impacts. This review also aims to detail the mechanisms by which microbes degrade veterinary drug compounds as well as highlighting successful case studies and recent advancements in microbe-based bioremediation. It also elaborates on microbial electrochemical technologies as an eco-friendly solution for removing pharmaceutical pollutants from wastewater. Lastly, we have summarized potential innovations and challenges in implementing bioremediation on a large scale under the section prospects and advancements in this field.
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Affiliation(s)
- Humaira Saeed
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Lucknow, India
| | - Sudhakar Padmesh
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Lucknow, India
| | - Aditi Singh
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Lucknow, India
| | - Abhishek Nandy
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Lucknow, India
| | - Sujit Pratap Singh
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Lucknow, India
| | - Ravi K. Deshwal
- Faculty of Biosciences, Institute of Bioscience and Technology, Shri Ramswaroop Memorial University, Barabanki, India
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6
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Ebsa G, Gizaw B, Admassie M, Degu T, Alemu T. The role and mechanisms of microbes in dichlorodiphenyltrichloroethane (DDT) and its residues bioremediation. BIOTECHNOLOGY REPORTS (AMSTERDAM, NETHERLANDS) 2024; 42:e00835. [PMID: 38560709 PMCID: PMC10972831 DOI: 10.1016/j.btre.2024.e00835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Revised: 03/09/2024] [Accepted: 03/09/2024] [Indexed: 04/04/2024]
Abstract
Environmental contamination with dichlorodiphenyltrichloroethane (DDT) has sever effects on the ecosystem worldwide. DDT is a recalcitrant synthetic chemical with high toxicity and lipophilicity. It is also bioaccumulated in the food chain and causes genotoxic, estrogenic, carcinogenic, and mutagenic effects on aquatic organisms and humans. Microbial remediation mechanism and its enzymes are very important for removing DDT from environment. DDT and its main residues dichlorodiphenyldichloroethylene (DDE) and dichlorodiphenyldichloroethane (DDD) can biodegrade slowly in soil and water. To enhance this process, a number of strategies are proposed, such as bio-attenuation, biostimulation, bioaugmentation and the manipulation of environmental conditions to enhance the activity of microbial enzymes. The addition of organic matter and flooding of the soil enhance DDT degradation. Microbial candidates for DDT remediation include micro-algae, fungi and bacteria. This review provide brief information and recommendation on microbial DDT remediation and its mechanisms.
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Affiliation(s)
- Girma Ebsa
- Department of Microbial, Cellular and Molecular Biology, Addis Ababa University, P. O. Box: 1176, Addis Ababa, Ethiopia
| | - Birhanu Gizaw
- Department of Microbial, Cellular and Molecular Biology, Addis Ababa University, P. O. Box: 1176, Addis Ababa, Ethiopia
| | - Mesele Admassie
- Department of Microbial, Cellular and Molecular Biology, Addis Ababa University, P. O. Box: 1176, Addis Ababa, Ethiopia
| | - Tizazu Degu
- Department of Crop Protection, Ethiopian Institute of Agricultural Research, P. O. Box: 2003, Addis Ababa, Ethiopia
| | - Tesfaye Alemu
- Department of Microbial, Cellular and Molecular Biology, Addis Ababa University, P. O. Box: 1176, Addis Ababa, Ethiopia
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Pasalari H, Moosavi A, Kermani M, Sharifi R, Farzadkia M. A systematic review on garbage enzymes and their applications in environmental processes. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024; 277:116369. [PMID: 38678793 DOI: 10.1016/j.ecoenv.2024.116369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 03/15/2024] [Accepted: 04/20/2024] [Indexed: 05/01/2024]
Abstract
Understanding the new insight on conversion of organic waste into value-added products can improve the environmental activities driven by microorganisms and return the nutrients to environment and earth. Here, we comprehensively review the available knowledge on application of garbage enzyme (GE) for different environmental activities including waste activated sludge, composting process, landfill leachate treatment, soil remediation and wastewater treatment with special focus on their efficiency. To identify peer-reviewed studies published in English-language journals, a comprehensive search was performed across multiple electronic databases including Scopus, Web of Science, Pubmed, and Embase. The search was conducted systematically using relevant keywords. The eligible studies were analyzed to extract data and information pertaining to components of GE, fermentation process operational parameters, type of hydrolytic enzymes and improved environmental performance. The findings derived from this current review demonstrated that GE produced from the fruit and vegetable peels, molasses or brown sugar (carbon source), and water within fermentation process contain different hydrolytic enzymes in order to facilitate the organic waste degradation. Therefore, GE can be considered as a promising and efficient pathway in order to improve the environmental activities depended on microorganism including, composting, wastewater and leachate treatment and bioremediation process.
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Affiliation(s)
- Hasan Pasalari
- Research Center for Environmental Health Technology, Iran University of Medical Sciences, Tehran, Iran; Department of Environmental Health Engineering, School of Public Health, Iran University of Medical Sciences, Tehran, Iran
| | - Arash Moosavi
- Department of Chemical Engineering, Isfahan University of Technology, Isfahan, Iran
| | - Majid Kermani
- Research Center for Environmental Health Technology, Iran University of Medical Sciences, Tehran, Iran; Department of Environmental Health Engineering, School of Public Health, Iran University of Medical Sciences, Tehran, Iran
| | - Roya Sharifi
- Department of Medical Laboratory Sciences, School of Allied Medical Sciences, Iran University of Medical Sciences, Tehran, Iran
| | - Mahdi Farzadkia
- Research Center for Environmental Health Technology, Iran University of Medical Sciences, Tehran, Iran; Department of Environmental Health Engineering, School of Public Health, Iran University of Medical Sciences, Tehran, Iran.
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8
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Nagy KK, Takács K, Németh I, Varga B, Grolmusz V, Molnár M, Vértessy BG. Novel enzymes for biodegradation of polycyclic aromatic hydrocarbons identified by metagenomics and functional analysis in short-term soil microcosm experiments. Sci Rep 2024; 14:11608. [PMID: 38773163 PMCID: PMC11109138 DOI: 10.1038/s41598-024-61566-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 05/07/2024] [Indexed: 05/23/2024] Open
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are highly toxic, carcinogenic substances. On soils contaminated with PAHs, crop cultivation, animal husbandry and even the survival of microflora in the soil are greatly perturbed, depending on the degree of contamination. Most microorganisms cannot tolerate PAH-contaminated soils, however, some microbial strains can adapt to these harsh conditions and survive on contaminated soils. Analysis of the metagenomes of contaminated environmental samples may lead to discovery of PAH-degrading enzymes suitable for green biotechnology methodologies ranging from biocatalysis to pollution control. In the present study, our goal was to apply a metagenomic data search to identify efficient novel enzymes in remediation of PAH-contaminated soils. The metagenomic hits were further analyzed using a set of bioinformatics tools to select protein sequences predicted to encode well-folded soluble enzymes. Three novel enzymes (two dioxygenases and one peroxidase) were cloned and used in soil remediation microcosms experiments. The experimental design of the present study aimed at evaluating the effectiveness of the novel enzymes on short-term PAH degradation in the soil microcosmos model. The novel enzymes were found to be efficient for degradation of naphthalene and phenanthrene. Adding the inorganic oxidant CaO2 further increased the degrading potential of the novel enzymes for anthracene and pyrene. We conclude that metagenome mining paired with bioinformatic predictions, structural modelling and functional assays constitutes a powerful approach towards novel enzymes for soil remediation.
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Affiliation(s)
- Kinga K Nagy
- Department of Applied Biotechnology and Food Science, Faculty of Chemical Technology and Biotechnology, Budapest University of Technology and Economics, Műegyetem Rkp. 3., 1111, Budapest, Hungary
- Institute of Enzymology, Research Centre for Natural Sciences, Magyar Tudósok Körútja 2., 1117, Budapest, Hungary
| | - Kristóf Takács
- PIT Bioinformatics Group, Eötvös Loránd University, 1117, Budapest, Hungary
| | - Imre Németh
- Department of Applied Biotechnology and Food Science, Faculty of Chemical Technology and Biotechnology, Budapest University of Technology and Economics, Műegyetem Rkp. 3., 1111, Budapest, Hungary
| | - Bálint Varga
- PIT Bioinformatics Group, Eötvös Loránd University, 1117, Budapest, Hungary
| | - Vince Grolmusz
- PIT Bioinformatics Group, Eötvös Loránd University, 1117, Budapest, Hungary
- Uratim Ltd., 1118, Budapest, Hungary
| | - Mónika Molnár
- Department of Applied Biotechnology and Food Science, Faculty of Chemical Technology and Biotechnology, Budapest University of Technology and Economics, Műegyetem Rkp. 3., 1111, Budapest, Hungary.
| | - Beáta G Vértessy
- Department of Applied Biotechnology and Food Science, Faculty of Chemical Technology and Biotechnology, Budapest University of Technology and Economics, Műegyetem Rkp. 3., 1111, Budapest, Hungary.
- Institute of Enzymology, Research Centre for Natural Sciences, Magyar Tudósok Körútja 2., 1117, Budapest, Hungary.
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9
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Ezenweani RS, Kadiri MO. Evaluating the productivity and bioremediation potential of two tropical marine algae in petroleum hydrocarbon polluted tropical marine water. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2024; 26:1099-1116. [PMID: 38093707 DOI: 10.1080/15226514.2023.2291115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
Bioremediation using tropical marine algae provides cost effective and eco-friendly alternative mean of removing toxic and harmful substances from the environment. Bioremediation is an important tool in sustainable environmental management and protection. This study examined the productivity and bioremediation potential of Nannochloropsis oculata and Porphyridium cruentum in Water Soluble Fraction (WSF) of petroleum fuels by investigating the growth of Nannochloropsis oculata and Porphyridium cruentum at 0%, 10% 20% 30% 40% 50% 75% 100% of WSF of kerosene, diesel, and gasoline. Growth was monitored optically every two days for fourteen days using 721 Visible Spectrophotometer. Productivity was measured using prescribed procedure. Bioremediation potential of test algae were examined using standard method for the GC analysis of diesel range organics in 100% WSFs. The minimum growth for both species was recorded at 100% in all the fuels. The maximum growth of Porphyridium cruentum was obtained at 10% in all fuels, while the maximum growth of Nannochloropsis oculata was obtained at 30% in both kerosene and gasoline and at 50% in diesel. Whereas Porphyridium cruentum was greatly inhibited by all fuels, Nannochloropsis oculata was stimulated at lower concentration of the fuels. Nannochloropsis oculata proved more efficient for bioremediation of the petroleum fuels with 84.58%, 65.51% and 70.77% removal efficiency for kerosene, diesel and gasoline respectively, while Porphyridium cruentum was 58.94%, 46.64% and 56.67% respectively. Nannochloropsis oculata is a very strong and reliable candidate for bioremediation of petroleum hydrocarbons and should be subjected to further examination for sustainable and eco-friendly remediation of petroleum pollution.
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Affiliation(s)
- Raymond Sunday Ezenweani
- Department of Marine Environment and Pollution Control, Nigeria Maritime University, Okerenkoko, Nigeria
| | - Medina Omo Kadiri
- Department of Plant Biology and Biotechnology, University of Benin, Benin, Nigeria
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Zheng J, Huang X, Gao L, Xu X, Hou L, Cai T, Jia S. Deciphering the core bacterial community structure and function and their response to environmental factors in activated sludge from pharmaceutical wastewater treatment plants. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 346:123635. [PMID: 38428794 DOI: 10.1016/j.envpol.2024.123635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 01/29/2024] [Accepted: 02/21/2024] [Indexed: 03/03/2024]
Abstract
Pharmaceutical wastewater is recognized for its heightened concentrations of organic pollutants, and biological treatment stands out as an effective technology to remove these organic pollution. Therefore, a comprehensive exploration of core bacterial community compositions, functions, and their responses to environmental factors in pharmaceutical wastewater treatment plants (PWWTPs) is important for understanding the removal mechanism of these organic pollutants. This study comprehensively investigated 36 activated sludge (AS) samples from 15 PWWTPs in China. The results revealed that Proteobacteria (45.41%) was the dominant phylum in AS samples, followed by Bacteroidetes (19.54%) and Chloroflexi (4.13%). While the dominant genera were similar in both aerobic and anaerobic treatment processes, their relative abundances exhibited significant variations. Genera like HA73, Kosmotoga, and Desulfovibrio were more abundant during anaerobic treatment, while Rhodoplanes, Bdellovibrio, and Hyphomicrobium dominated during aerobic treatment. 13 and 10 core operational taxonomic units (OTUs) were identified in aerobic and anaerobic sludge, respectively. Further analysis revealed that core OTUs belonging to genera Kosmotoga, Desulfovibrio, Thauera, Hyphomicrobium, and Chelativorans, were associated with key functions, including sulfur metabolism, methane metabolism, amino acid metabolism, carbohydrate metabolism, toluene degradation, and nitrogen metabolism. Furthermore, this study highlighted the crucial roles of environmental factors, such as COD, NH4+-N, SO42-, and TP, in shaping both the structure and core functions of bacterial communities within AS of PWWTPs. Notably, these factors indirectly affect functional attributes by modulating the bacterial community composition and structure in pharmaceutical wastewater. These findings provide valuable insights for optimizing the efficiency of biochemical treatment processes in PWWTPs.
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Affiliation(s)
- Jinli Zheng
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xin Huang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Linjun Gao
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xu Xu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Lijun Hou
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Tianming Cai
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shuyu Jia
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
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11
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Anju VT, Busi S, Mohan MS, Salim SA, Ar S, Imchen M, Kumavath R, Dyavaiah M, Prasad R. Surveillance and mitigation of soil pollution through metagenomic approaches. Biotechnol Genet Eng Rev 2024; 40:589-622. [PMID: 36881114 DOI: 10.1080/02648725.2023.2186330] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2023] [Accepted: 02/23/2023] [Indexed: 03/08/2023]
Abstract
Soil pollution is one of the serious global threats causing risk to environment and humans. The major cause of accumulation of pollutants in soil are anthropogenic activities and some natural processes. There are several types of soil pollutants which deteriorate the quality of human life and animal health. They are recalcitrant hydrocarbon compounds, metals, antibiotics, persistent organic compounds, pesticides and different kinds of plastics. Due to the detrimental properties of pollutants present in soil on human life and ecosystem such as carcinogenic, genotoxic and mutagenic effects, alternate and effective methods to degrade the pollutants are recommended. Bioremediation is an effective and inexpensive method of biological degradation of pollutants using plants, microorganisms and fungi. With the advent of new detection methods, the identification and degradation of soil pollutants in different ecosystems were made easy. Metagenomic approaches are a boon for the identification of unculturable microorganisms and to explore the vast bioremediation potential for different pollutants. Metagenomics is a power tool to study the microbial load in polluted or contaminated land and its role in bioremediation. In addition, the negative ecosystem and health effect of pathogens, antibiotic and metal resistant genes found in the polluted area can be studied. Also, the identification of novel compounds/genes/proteins involved in the biotechnology and sustainable agriculture practices can be performed with the integration of metagenomics.
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Affiliation(s)
- V T Anju
- Department of Biochemistry and Molecular Biology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - Siddhardha Busi
- Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - Mahima S Mohan
- Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - Simi Asma Salim
- Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - Sabna Ar
- Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - Madangchanok Imchen
- Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - Ranjith Kumavath
- Department of Biotechnology, School of Life Sciences, Pondicherry University, Puducherry, India
- Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Kerala, India
| | - Madhu Dyavaiah
- Department of Biochemistry and Molecular Biology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - Ram Prasad
- Department of Botany, School of Life Sciences, Mahatma Gandhi Central University, Bihar, India
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12
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Wani AK, Ul Gani Mir T, Akhtar N, Chopra C, Bashir SM, Hassan S, Kumar V, Singh R, Américo-Pinheiro JHP. Algae-Mediated Removal of Prevalent Genotoxic Antibiotics: Molecular Perspective on Algae-Bacteria Consortia and Bioreactor-Based Strategies. Curr Microbiol 2024; 81:112. [PMID: 38472428 DOI: 10.1007/s00284-024-03631-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 01/31/2024] [Indexed: 03/14/2024]
Abstract
Antibiotic pollution poses a potential risk of genotoxicity, as antibiotics released into the environment can induce DNA damage and mutagenesis in various organisms. This pollution, stemming from pharmaceutical manufacturing, agriculture, and improper disposal, can disrupt aquatic ecosystems and potentially impact human health through the consumption of contaminated water and food. The removal of genotoxic antibiotics using algae-mediated approaches has gained considerable attention due to its potential for mitigating the environmental and health risks associated with these compounds. The paper provides an in-depth examination of the molecular aspects concerning algae and bioreactor-driven methodologies utilized for the elimination of deleterious antibiotics. The molecular analysis encompasses diverse facets, encompassing the discernment and profiling of algae species proficient in antibiotic degradation, the explication of enzymatic degradation pathways, and the refinement of bioreactor configurations to augment removal efficacy. Emphasizing the significance of investigating algal approaches for mitigating antibiotic pollution, this paper underscores their potential as a sustainable solution, safeguarding both the environment and human health.
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Affiliation(s)
- Atif Khurshid Wani
- School of Bioengineering and Biosciences, Lovely Professional University, Jalandhar, Punjab, 144411, India
| | - Tahir Ul Gani Mir
- School of Bioengineering and Biosciences, Lovely Professional University, Jalandhar, Punjab, 144411, India
| | - Nahid Akhtar
- School of Bioengineering and Biosciences, Lovely Professional University, Jalandhar, Punjab, 144411, India
| | - Chirag Chopra
- School of Bioengineering and Biosciences, Lovely Professional University, Jalandhar, Punjab, 144411, India
| | - Showkeen Muzamil Bashir
- Biochemistry & Molecular Biology Lab, Division of Veterinary Biochemistry, Faculty of Veterinary Sciences and Animal Husbandry, Sher-e-Kashmir University of Agricultural Sciences and Technology, Srinagar, Jammu and Kashmir, 190006, India
| | - Shabir Hassan
- Department of Biology, College of Arts and Sciences, Khalifa University, Main Campus, Abu Dhabi, United Arab Emirates
| | - Vineet Kumar
- Department of Microbiology, School of Life Sciences, Central University of Rajasthan, NH-8, Bandarsindri, Kishangarh, Ajmer, Rajasthan, 305817, India
| | - Reena Singh
- School of Bioengineering and Biosciences, Lovely Professional University, Jalandhar, Punjab, 144411, India
| | - Juliana Heloisa Pinê Américo-Pinheiro
- Department of Forest Science, Soils and Environment, School of Agronomic Sciences, São Paulo State University (UNESP), Ave. Universitária, 3780, Botucatu, São Paulo, 18610-034, Brazil.
- Brazil University, Street Carolina Fonseca, 584, São Paulo, São Paulo, 08230-030, Brazil.
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13
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Abd-El-Haleem D. AraC transcriptional regulator, aspartate semialdehyde dehydrogenase and acyltransferase: Three putative genes in phenol catabolic pathway of Acinetobacter sp. Strain DF4. J Genet Eng Biotechnol 2024; 22:100349. [PMID: 38494254 PMCID: PMC10980861 DOI: 10.1016/j.jgeb.2023.100349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Accepted: 12/03/2023] [Indexed: 03/19/2024]
Abstract
The objective of this study was to identify genes associated with the biodegradation of phenol by Acinetobacter sp. strain DF4 through the use of differential display (DD) methodology. The bacteria were grown in YEPG medium, and total RNA was extracted and analyzed using labeled primers to detect gene expression differences. Three distinctively expressed cDNA bands (ph1, ph2, and ph3) were identified, cloned, and sequenced. DNA analysis involved searching for open reading frames (ORFs), verifying results with the NCBI database, predicting promoter regions, and constructing phylogenetic trees using bioinformatics tools. The ph1 gene displayed a 97% identity with the AraC transcriptional regulator, suggesting its potential role in regulating the ortho-catabolic pathway of phenol. The ph2 gene showed a 98% identity with aspartate semialdehyde dehydrogenase, which is involved in phenol degradation. The ph3 gene had a 93% identity with acetyltransferase. Essential transcription factors, such as TATA, GTGTGT, CACA, and CTTTT, were detected, and the three genes promoter regions were predicted. This study successfully identified functional genes involved in the metabolism of cyclic chemicals, particularly phenol, using the DD technique. These findings provide insights into the biodegradation pathways of phenol by Acinetobacter sp. Strain DF4 and may contribute to the development of more efficient bioremediation strategies for phenol-contaminated environments.
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Affiliation(s)
- Desouky Abd-El-Haleem
- Environmental Biotechnology Department, Genetic Engineering and Biotechnology Institute, City of Scientific Research and Technological Applications, Burgelarab, Alexandria, Egypt.
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14
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Gao L, Wang S, Xu X, Zheng J, Cai T, Jia S. Metagenomic analysis reveals the distribution, function, and bacterial hosts of degradation genes in activated sludge from industrial wastewater treatment plants. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 340:122802. [PMID: 37913976 DOI: 10.1016/j.envpol.2023.122802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 10/12/2023] [Accepted: 10/23/2023] [Indexed: 11/03/2023]
Abstract
For comprehensive insights into the bacterial community and its functions during industrial wastewater treatment, with a particular emphasis on its pivotal role in the bioremediation of organic pollutants, this study utilized municipal samples as a control group for metagenomic analysis. This approach allowed us to investigate the distribution, function, and bacterial hosts of biodegradation genes (BDGs) and organic degradation genes (ODGs), as well as the dynamics of bacterial communities during the industrial wastewater bioprocess. The results revealed that BDGs and ODGs associated with the degradation of benzoates, biphenyls, triazines, nitrotoluenes, and chlorinated aromatics were notably more abundant in the industrial samples. Specially, genes like clcD, linC, catE, pcaD, hbaB, hcrC, and badK, involved in the peripheral pathways for the catabolism of aromatic compounds, benzoate transport, and central aromatic intermediates, showed a significantly higher abundance of industrial activated sludge (AS) than municipal AS. Additionally, the BDG/ODG co-occurrence contigs in industrial samples exhibited a higher diversity in terms of degradation gene carrying capacity. Functional analysis of Clusters of Orthologous Groups (COGs) indicated that the primary function of bacterial communities in industrial AS was associated with the category of "metabolism". Furthermore, the presence of organic pollutants in industrial wastewater induced alterations in the bacterial community, particularly impacting the abundance of key hosts harboring BDGs and ODGs (e.g. Bradyrhizobium, Hydrogenophaga, and Mesorhizobium). The specific hosts of BDG/ODG could explain the distribution characteristics of degradation genes. For example, the prevalence of the Adh1 gene, primarily associated with Mesorhizobium, was notably more prevalent in the industrial AS. Overall, this study provides valuable insights into the development of more effective strategies for the industrial wastewater treatment and the mitigation of organic pollutant contamination.
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Affiliation(s)
- Linjun Gao
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shuya Wang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xu Xu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Jinli Zheng
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Tianming Cai
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shuyu Jia
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
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15
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Mazaheri H, Nazeri S. Biodegradation and Detoxification of Low-Density Polyethylene (LDPE) by Stenotrophomonas sp. and Alcaligenaceae bacterium. BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2023; 112:19. [PMID: 38142453 DOI: 10.1007/s00128-023-03836-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Accepted: 11/09/2023] [Indexed: 12/26/2023]
Abstract
Every year, human activities introduce large amounts of synthetic plastics into the environment. Decomposition of the plastic derivatives is very difficult and time consuming, so it is essential to eliminate these pollutants using different methods. Bioremediation, is suitable option, because of the low cost and environmentally safe. In this research, degradation of low-density polyethylene (LDPE) was investigated by two strains, isolated from Hamadan province (Iran) landfill soil. After identification by 16sr DNA primers, their abilities of polyethylene biodegradation were examined by Fourier transform infrared (FTIR), SEM and Gas Chromatography-Mass Spectrometry (GC-MS). Using media contain polyethylene) after and before addition of bacteria), toxicity test was conducted by measuring the germination index, root and hypocotyl length of Lactuca sativa seed. After three months, 10.15% ± 1.04 weight loss of LDPE achieved through strain Stenotrophomonas sp. degradation. Both strains had high biofilm formation capacity, confirmed by Electron microscope images and FTIR analysis. GC-MS confirmed the presence of the end-product of LDPE degradation (Pentacosane, Hexacosane, and Octadecane). Both, Stenotrophomonas sp. and Alcaligenaceae bacterium had significant detoxification ability. In media contain LDPE (without bacteria), decrease in the germination of lettuce seeds was observed.
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Affiliation(s)
- Hamide Mazaheri
- Biotechnology Department, Faculty of Agriculture, Bu-Ali Sina University, Hamedan, Islamic Republic of Iran
| | - Sonbol Nazeri
- Biotechnology Department, Faculty of Agriculture, Bu-Ali Sina University, Hamedan, Islamic Republic of Iran.
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16
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Naqvi SNH, Bibi I, Niazi NK, Tahseen R, Al-Misned F, Shahid M, Naqvi SA, Ashraf W, Shabir G, Iqbal S, Ali F, Afzal M. Exploring the potential of bacterial-augmented floating treatment wetlands for the remediation of detergent-contaminated water. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2023; 26:882-893. [PMID: 37933838 DOI: 10.1080/15226514.2023.2275725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2023]
Abstract
Due to industrialization and urbanization, the use of detergents inadvertently led to contamination of aquatic environments, thus posing potential threat to aquatic organisms and human health. One of the main components of detergents is linear alkylbenzene sulfonate (LAS), which can cause toxic effects on living organisms, particularly aquatic life in the environment. In this study, floating treatment wetlands (FTWs) mesocosms were developed and augmented with LAS-degrading bacteria. The plant species, Brachiaria mutica (Para grass), was vegetated to establish FTWs and bacterial consortium (1:1:1:1) of Pseudomonas aeruginosa strain PJRS20, Bacillus sp. BRRH60, Acinetobacter sp. strain CYRH21, and Burkholderia phytofirmans Ps.JN was augmented (free or immobilized) in these mesocosms. Results revealed that the FTWs removed LAS from the contaminated water and their augmentation with bacteria slightly increased LAS removal during course of the experiment. Maximum reduction in LAS concentration (94%), chemical oxygen demand (91%), biochemical oxygen demand (93%), and total organic carbon (91%) was observed in the contaminated water having FTWs augmented with bacterial consortium immobilized on polystyrene sheet. This study highlights that the FTWs supported with immobilized bacteria on polystyrene sheets can provide an eco-friendly and sustainable solution for the remediation of LAS-bearing water, especially for developing countries like Pakistan.
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Affiliation(s)
- Syed Najaf Hasan Naqvi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, Pakistan
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering College, Pakistan Institute of Engineering and Applied Sciences (NIBGE-C PIEAS), Faisalabad, Pakistan
| | - Irshad Bibi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Nabeel Khan Niazi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Razia Tahseen
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering College, Pakistan Institute of Engineering and Applied Sciences (NIBGE-C PIEAS), Faisalabad, Pakistan
| | - Fahad Al-Misned
- Department of Zoology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Muhammad Shahid
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Vehari, Pakistan
| | | | | | - Ghulam Shabir
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering College, Pakistan Institute of Engineering and Applied Sciences (NIBGE-C PIEAS), Faisalabad, Pakistan
| | - Samina Iqbal
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering College, Pakistan Institute of Engineering and Applied Sciences (NIBGE-C PIEAS), Faisalabad, Pakistan
| | - Fawad Ali
- Centre for Planetary Health and Food Security, Griffith University, Nathan Campus (4111), Brisbane, QLD, Australia
- Queensland Department of Agriculture and Fisheries, Mareeba (4880), QLD, Australia
| | - Muhammad Afzal
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering College, Pakistan Institute of Engineering and Applied Sciences (NIBGE-C PIEAS), Faisalabad, Pakistan
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17
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Choudhury SP, Haq I, Kalamdhad AS. Unleashing synergistic potential of microbially enhanced anaerobic co-digestion of petroleum refinery biosludge and yard waste: Impact of nutrient balance and microbial diversity. JOURNAL OF HAZARDOUS MATERIALS 2023; 460:132361. [PMID: 37659234 DOI: 10.1016/j.jhazmat.2023.132361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Revised: 08/07/2023] [Accepted: 08/20/2023] [Indexed: 09/04/2023]
Abstract
Petroleum refinery sludge, an egregious solid residue generated from the wastewater treatment plants poses an environmental hazard owing to its intricate hydrocarbon composition, necessitating competent treatment for secure disposal. The study proposes a green solution through anaerobic co-digestion of nitrogen-rich petroleum refinery sludge (PS) with carbon-rich yard waste (YW), balancing the nutrients and moisture content for efficient microbial proliferation. Using Central Composite Design-Response Surface Methodology, 1 L batch experiments were conducted with varying carbon/nitrogen (C/N) ratios and pH to achieve maximum biogas yield within 50 days of co-digestion. However, the sluggish biogas recovery (40%) indicated a slow rate-limiting hydrolysis, necessitating pretreatment. Feedstock incubation with Bacillus subtilis IH1 strain, isolated from the microbially-enriched PS, at 108 colony forming units (CFU) per mL for 5 days maximized the soluble chemical oxygen demand and volatile fatty acids by 2.2 and 1.4 folds respectively compared to untreated feedstock. Scale-up Bacillus subtilis aided co-digestion studies further augmented biogas by 76% against untreated monodigestion of PS with significant total petroleum hydrocarbons, emulsions, and lignocellulosic degradation. Further identification of major organic pollutants in the batch digestate revealed significant degradation of the toxic organic hydrocarbon pollutants apotheosizing the efficacy of the synergistic sustainable technique for the management of PS. ENVIRONMENTAL IMPLICATION: The effluent treatment plants (ETPs) of petroleum refining industries generate sludge which is a complex mixture of petroleum hydrocarbons, oil-water (O/W) emulsions and heavy metals. These petroleum hydrocarbon constituents can be linear/cyclic alkanes, polyaromatics, resins and asphaltenes, whose intricate composition is reportedly carcinogenic, cytogenic and mutagenic, classifying it as hazardous waste. Biological treatment of these sludge through anaerobic digestion leads to utilization of petroleum hydrocarbons with subsequent energy recovery. Co-digestion of these sludge with competent co-substrates leads to nutrient balance, diverse microbial proliferation and toxicant dilution. Microbially aided co-digestion further augments methane rendering a digestate with utmost pollutant degradation.
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Affiliation(s)
- Shinjini Paul Choudhury
- Department of Civil Engineering, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India.
| | - Izharul Haq
- Department of Civil Engineering, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India; School of Life and Basic Sciences, Jaipur National University, Jaipur 302017, Rajasthan, India
| | - Ajay S Kalamdhad
- Department of Civil Engineering, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India
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18
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Ekeoma BC, Ekeoma LN, Yusuf M, Haruna A, Ikeogu CK, Merican ZMA, Kamyab H, Pham CQ, Vo DVN, Chelliapan S. Recent Advances in the Biocatalytic Mitigation of Emerging Pollutants: A Comprehensive Review. J Biotechnol 2023; 369:14-34. [PMID: 37172936 DOI: 10.1016/j.jbiotec.2023.05.003] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Revised: 04/25/2023] [Accepted: 05/09/2023] [Indexed: 05/15/2023]
Abstract
The issue of environmental pollution has been worsened by the emergence of new contaminants whose morphology is yet to be fully understood. Several techniques have been adopted to mitigate the pollution effects of these emerging contaminants, and bioremediation involving plants, microbes, or enzymes has stood out as a cost-effective and eco-friendly approach. Enzyme-mediated bioremediation is a very promising technology as it exhibits better pollutant degradation activity and generates less waste. However, this technology is subject to challenges like temperature, pH, and storage stability, in addition to recycling difficulty as it is arduous to isolate them from the reaction media. To address these challenges, the immobilization of enzymes has been successfully applied to ameliorate the activity, stability, and reusability of enzymes. Although this has significantly increased the uses of enzymes over a wide range of environmental conditions and facilitated the use of smaller bioreactors thereby saving cost, it still comes with additional costs for carriers and immobilization. Additionally, the existing immobilization methods have their individual limitations. This review provides state-of-the-art information to readers focusing on bioremediation using enzymes. Different parameters such as: the sustainability of biocatalysts, the ecotoxicological evaluation of transformation contaminants, and enzyme groups used were reviewed. The efficacy of free and immobilized enzymes, materials and methods for immobilization, bioreactors used, challenges to large-scale implementation, and future research needs were thoroughly discussed.
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Affiliation(s)
- Bernard Chukwuemeka Ekeoma
- Department of Chemical and Biological Engineering, The University of Alabama, Tuscaloosa, Alabama, 35487, USA
| | - Leonard Nnamdi Ekeoma
- Department of Pharmacy, Nnamdi Azikiwe University, Agulu Campus, Anambra State, Nigeria
| | - Mohammad Yusuf
- Institute of Hydrocarbon Recovery, Universiti Teknologi PETRONAS, Bandar Seri Iskandar, Perak 32610, Malaysia.
| | - Abdurrashid Haruna
- Department of Fundamental and Applied Sciences, Universiti Teknologi PETRONAS, Bandar Seri Iskandar, Perak, 32610, Malaysia; Department of Chemistry, Ahmadu Bello University Zaria-Nigeria
| | | | - Zulkifli Merican Aljunid Merican
- Department of Fundamental and Applied Sciences, Universiti Teknologi PETRONAS, Bandar Seri Iskandar, Perak, 32610, Malaysia; Institute of Contaminant Management, Universiti Teknologi PETRONAS, Bandar Seri Iskandar, Perak, 32610, Malaysia
| | - Hesam Kamyab
- Faculty of Architecture and Urbanism, UTE University, Calle Rumipamba S/N and Bourgeois, Quito, Ecuador; Department of Biomaterials, Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Sciences, Chennai, 600 077, India; Process Systems Engineering Centre (PROSPECT), Faculty of Chemical and Energy Engineering, Faculty of Engineering, Universiti Teknologi Malaysia, Skudai, Johor, Malaysia.
| | - Cham Q Pham
- Institute of Applied Technology and Sustainable Development, Nguyen Tat Thanh University, Ho Chi Minh City 755414, Vietnam
| | - Dai-Viet N Vo
- Centre of Excellence for Green Energy and Environmental Nanomaterials (CE@GrEEN), Nguyen Tat Thanh University, Ho Chi Minh City, 755414, Viet Nam.
| | - Shreeshivadasan Chelliapan
- Engineering Department, Razak Faculty of Technology & Informatics, Universiti Teknologi Malaysia, Jalan Sultan Yahya Petra, 54100 Kuala Lumpur, Malaysia
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19
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Meegoda JN, Hettiarachchi MC. A Path to a Reduction in Micro and Nanoplastics Pollution. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2023; 20:ijerph20085555. [PMID: 37107837 PMCID: PMC10139116 DOI: 10.3390/ijerph20085555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Accepted: 04/13/2023] [Indexed: 05/11/2023]
Abstract
Microplastics (MP) are plastic particles less than 5 mm in size. There are two categories of MP: primary and secondary. Primary or microscopic-sized MP are intentionally produced material. Fragmentation of large plastic debris through physical, chemical, and oxidative processes creates secondary MP, the most abundant type in the environment. Microplastic pollution has become a global environmental problem due to their abundance, poor biodegradability, toxicological properties, and negative impact on aquatic and terrestrial organisms including humans. Plastic debris enters the aquatic environment via direct dumping or uncontrolled land-based sources. While plastic debris slowly degrades into MP, wastewater and stormwater outlets discharge a large amount of MP directly into water bodies. Additionally, stormwater carries MP from sources such as tire wear, artificial turf, fertilizers, and land-applied biosolids. To protect the environment and human health, the entry of MP into the environment must be reduced or eliminated. Source control is one of the best methods available. The existing and growing abundance of MP in the environment requires the use of multiple strategies to combat pollution. These strategies include reducing the usage, public outreach to eliminate littering, reevaluation and use of new wastewater treatment and sludge disposal methods, regulations on macro and MP sources, and a wide implementation of appropriate stormwater management practices such as filtration, bioretention, and wetlands.
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Affiliation(s)
- Jay N. Meegoda
- Department of Civil and Environmental Engineering, New Jersey Institute of Technology, Newark, NJ 07102, USA
- Correspondence: ; Tel.: +1-973-596-2464
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20
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Vanitha TK, Suresh G, Bhandi MM, Mudiam MKR, Mohan SV. Microbial degradation of organochlorine pesticide: 2,4-Dichlorophenoxyacetic acid by axenic and mixed consortium. BIORESOURCE TECHNOLOGY 2023; 382:129031. [PMID: 37037331 DOI: 10.1016/j.biortech.2023.129031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Revised: 04/03/2023] [Accepted: 04/05/2023] [Indexed: 05/31/2023]
Abstract
The presence of 2,4-dichlorophenoxyacetic acid (2,4-D), an organochlorine herbicide, in the environment has raised public concern as it poses hazard to both humans and the ecosystem. Three potential strains having the capability to degrade 2,4-D were isolated from on site agricultural soil and identified as Arthrobacter sp. SVMIICT25, Sphingomonas sp. SVMIICT11 and Stenotrophomonas sp. SVMIICT13. Over 12 days of incubation, 81-90% of 100 mg/L of 2,4-D degradation was observed at 2% inoculum. A shorter lag phase with 80% of degradation efficiency was observed within 5 days when the inoculum size was increased to 10%. Six microbial consortia were prepared by combining the isolates along with in-house strains, Bacillus sp. and Pseudomonas sp. Consortia R3 (Arthrobacter sp. + Sphingomonas sp.), operated with 10% of inoculum, showed 85-90% degradation within 4 days and 98-100% in 9 days. Further, targeted exo-metabolite analysis confirmed the presence and catabolism of intermediate 2,4-dichlorophenol and 4-chlorophenol compounds.
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Affiliation(s)
- T K Vanitha
- Bioengineering and Environmental Sciences Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad, Telangana 500 007, India; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad 201002, India
| | - G Suresh
- Bioengineering and Environmental Sciences Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad, Telangana 500 007, India
| | - Murali Mohan Bhandi
- Analytical & Structural Chemistry Department, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad, Telangana 500 007, India; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Mohana Krishna Reddy Mudiam
- Analytical & Structural Chemistry Department, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad, Telangana 500 007, India; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad 201002, India
| | - S Venkata Mohan
- Bioengineering and Environmental Sciences Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad, Telangana 500 007, India; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad 201002, India.
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21
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Ji L, Zhang H, Ding W, Song R, Han Y, Yu H, Paneth P. Theoretical Kinetic Isotope Effects in Establishing the Precise Biodegradation Mechanisms of Organic Pollutants. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:4915-4929. [PMID: 36926881 DOI: 10.1021/acs.est.2c04755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Compound-specific isotope analysis (CSIA) for natural isotope ratios has been recognized as a promising tool to elucidate biodegradation pathways of organic pollutants by microbial enzymes by relating reported kinetic isotope effects (KIEs) to apparent KIEs (AKIEs) derived from bulk isotope fractionations (εbulk). However, for many environmental reactions, neither are the reference KIE ranges sufficiently narrow nor are the mechanisms elucidated to the point that rate-determining steps have been identified unequivocally. In this work, besides providing reference KIEs and rationalizing AKIEs, good relationships have been explained by DFT computations for diverse biodegradation pathways with known enzymatic models between the theoretical isotope fractionations (εbulk') from intrinsic KIEs on the rate-determining steps and the observed εbulk. (1) To confirm the mechanistic details of previously reported pathway-dependent CSIA, it includes isotope changes in MTBE biodegradation between hydroxylation by CYP450 and SN2 reaction by cobalamin-dependent methyltransferase, the regioselectivity of toluene biodegradation by CYP450, and the rate-determining step in toluene biodegradation by benzylsuccinate synthase. (2) To yield new fundamental insights into some unclear biodegradation pathways, it consists of the oxidative function of toluene dioxygenase in biodegradation of TCE, the epoxidation mode in biodegradation of TCE by toluene 4-monooxygenase, and the weighted average mechanism in biodegradation of cDCE by CYP450.
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Affiliation(s)
- Li Ji
- School of Environment Science and Spatial Informatics, China University of Mining and Technology, Daxue Road 1, Xuzhou 221116, China
| | - Huanni Zhang
- School of Environment Science and Spatial Informatics, China University of Mining and Technology, Daxue Road 1, Xuzhou 221116, China
- College of Environmental and Resource Sciences, Zhejiang University, Yuhangtang Road 866, Hangzhou 310058, China
| | - Wen Ding
- School of Environment Science and Spatial Informatics, China University of Mining and Technology, Daxue Road 1, Xuzhou 221116, China
| | - Runqian Song
- School of Environment Science and Spatial Informatics, China University of Mining and Technology, Daxue Road 1, Xuzhou 221116, China
- College of Environmental and Resource Sciences, Zhejiang University, Yuhangtang Road 866, Hangzhou 310058, China
| | - Ye Han
- School of Environment Science and Spatial Informatics, China University of Mining and Technology, Daxue Road 1, Xuzhou 221116, China
| | - Haiying Yu
- College of Geography and Environmental Sciences, Zhejiang Normal University, Jinhua 321004, China
| | - Piotr Paneth
- Institute of Applied Radiation Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego 116, Lodz 90-924, Poland
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22
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Kugarajah V, Nisha KN, Jayakumar R, Sahabudeen S, Ramakrishnan P, Mohamed SB. Significance of microbial genome in environmental remediation. Microbiol Res 2023; 271:127360. [PMID: 36931127 DOI: 10.1016/j.micres.2023.127360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Revised: 02/27/2023] [Accepted: 03/08/2023] [Indexed: 03/11/2023]
Abstract
Environmental pollutants seriously threaten the ecosystem and health of various life forms, particularly with the rapid industrialization and emerging population. Conventionally physical and chemical strategies are being opted for the removal of these pollutants. Bioremediation, through several advancements, has been a boon to combat the existing threat faced today. Microbes with enzymes degrade various pollutants and utilize them as a carbon and energy source. With the existing demand and through several research explorations, Genetically Engineered Microorganisms (GEMs) have paved to be a successful approach to abate pollution through bioremediation. The genome of the microbe determines its biodegradative nature. Thus, methods including pure culture techniques and metagenomics are used for analyzing the genome of microbes, which provides information about catabolic genes. The information obtained along with the aid of biotechnology helps to construct GEMs that are cost-effective and safer thereby exhibiting higher degradation of pollutants. The present review focuses on the role of microbes in the degradation of environmental pollutants, role of evolution in habitat and adaptation of microbes, microbial degenerative genes, their pathways, and the efficacy of recombinant DNA (rDNA) technology for creating GEMs for bioremediation. The present review also provides a gist of existing GEMs for bioremediation and their limitations, thereby providing a future scope of implementation of these GEMs for a sustainable environment.
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Affiliation(s)
- Vaidhegi Kugarajah
- Department of Nanobiomaterials, Institute for Biomedical Engineering, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Chennai 602015, India
| | | | - R Jayakumar
- Department of Nanobiomaterials, Institute for Biomedical Engineering, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Chennai 602015, India
| | - S Sahabudeen
- Department of Biotechnology, SRM Institute of Science and Technology, Kanchipuram Dist, Kattankulathur, Tamil Nadu, India; Medical Team, Doctoral Institute for Evidence Based Policy, Tokyo, Japan
| | - P Ramakrishnan
- Department of Nanobiomaterials, Institute for Biomedical Engineering, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Chennai 602015, India.
| | - S B Mohamed
- Department of Materials Science, School of Technology, Central University of Tamil Nadu, Thiruvarur 610005, Tamil Nadu, India.
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23
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Govindappa H, Abdi G, Uthappa UT, Sriram G, Han SS, Kurkuri M. Efficient separation of arsenic species of oxyanion As (III) and As (V) by using effective polymer inclusion membranes (PIM). CHEMOSPHERE 2023; 316:137851. [PMID: 36642130 DOI: 10.1016/j.chemosphere.2023.137851] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2022] [Revised: 12/23/2022] [Accepted: 01/10/2023] [Indexed: 06/17/2023]
Abstract
The heavy metal contaminant arsenic exist in the form of arsenite (As(III)) and arsenate (As(V)) ions. These ions are highly carcinogenic that are usually present in the ground water. To date, most of the designed polymer inclusion membrane (PIM) involved only about separation without differentiating the oxidation states. Thus, there is a research gap on separation of element with different oxidation states. Thus, this study addresses such research gap which have been not explored previously. To extract such ions from water, the present study involves fabrication of PIM by varying the compositions of the base polymer, carrier and plasticizer. Also effect of the strip solution, and transport properties were studied. High performance membrane was obtained with 50% (w/w) Aliquat 336 and 50% (w/w) Cellulose triacetate (CTA). The production of 1 m2 of PIM may cost approximately 0.08-0.16$. Also, we have combined the separation capacity of polymer inclusion membrane (PIM) with the sensitivity and elemental detection using atomic absorption spectrometry (AAS) to detect and separate As(III) and As(V). AAS is limited to detecting only elemental arsenic (As) and does not distinguish between As(III) and As(V). Further, to address such limitations in this current study we were able to separate As(V) from As(III) within 5 h. In addition, to provide sole solution a device was fabricated to extract As(V) in the field studies which displayed outstanding efficiency of 99.7 ± 0.2%. The extracted samples was tested in AAS to differentiate between oxidation states of the arsenic species and these important results are supportive in finding out the redox potential of water and for other geochemical explorations.
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Affiliation(s)
- Harshith Govindappa
- Centre for Research in Functional Materials (CRFM), JAIN (Deemed-to-be University), Jain Global Campus, Bengaluru, 562112, Karnataka, India
| | - Gholamreza Abdi
- Department of Biotechnology, Persian Gulf Research Institute, Persian Gulf University, 75169, Bushehr, Iran
| | - U T Uthappa
- School of Chemical Engineering, Yeungnam University, 280 Daehak-Ro, Gyeongsan, Gyeongbuk, 38541, Republic of Korea.
| | - Ganesan Sriram
- School of Chemical Engineering, Yeungnam University, 280 Daehak-Ro, Gyeongsan, Gyeongbuk, 38541, Republic of Korea
| | - Sung Soo Han
- School of Chemical Engineering, Yeungnam University, 280 Daehak-Ro, Gyeongsan, Gyeongbuk, 38541, Republic of Korea.
| | - Mahaveer Kurkuri
- Centre for Research in Functional Materials (CRFM), JAIN (Deemed-to-be University), Jain Global Campus, Bengaluru, 562112, Karnataka, India.
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24
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Birolli WG, Porto ALM. Esfenvalerate biodegradation by marine fungi is affected by seawater and emulsifier formulation. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:38394-38408. [PMID: 36580257 DOI: 10.1007/s11356-022-24921-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Accepted: 12/19/2022] [Indexed: 06/17/2023]
Abstract
Pesticides already were detected in the oceans, and their fates require evaluation in these environmental conditions. Therefore, marine-derived fungi were assessed for Esfenvalerate biodegradation, approaching the effects of seawater and use of commercial emulsifiable formulation. Residual pesticide and four metabolites were quantified. Furthermore, kinetics were determined for the three tested strains (Microsphaeropsis sp. CBMAI 1675, Acremonium sp. CBMAI 1676, and Westerdykella sp. CBMAI 1679). These facultative marine fungi biodegraded up to 87 ± 2% of 100 mg L-1 Esfenvalerate in liquid media. However, Esfenvalerate biodegradation was faster in low salinity conditions than in artificial seawater. Moreover, rates of consumption were higher for Esfenvalerate in the pure form than for the commercial emulsifiable formulation. These results suggest that half-life of Esfenvalerate formulated with inert ingredients in seawater can have a double prolongation effect that can contribute to health and environmental issues.
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Affiliation(s)
- Willian Garcia Birolli
- Laboratory of Organic Chemistry and Biocatalysis, São Carlos Institute of Chemistry, University of São Paulo, Avenida João Dagnone, 1100, Ed. Prof. Douglas Wagner Franco, Jd. Santa Angelina, Sao Carlos, SP, 13563-120, Brazil.
| | - André Luiz Meleiro Porto
- Laboratory of Organic Chemistry and Biocatalysis, São Carlos Institute of Chemistry, University of São Paulo, Avenida João Dagnone, 1100, Ed. Prof. Douglas Wagner Franco, Jd. Santa Angelina, Sao Carlos, SP, 13563-120, Brazil
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25
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Berhanu A, Mutanda I, Taolin J, Qaria MA, Yang B, Zhu D. A review of microbial degradation of per- and polyfluoroalkyl substances (PFAS): Biotransformation routes and enzymes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 859:160010. [PMID: 36356780 DOI: 10.1016/j.scitotenv.2022.160010] [Citation(s) in RCA: 32] [Impact Index Per Article: 32.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2022] [Revised: 10/26/2022] [Accepted: 11/03/2022] [Indexed: 06/16/2023]
Abstract
Since the 1950s, copious amounts of per- and polyfluoroalkyl substances (PFAS) (dubbed "forever chemicals") have been dumped into the environment, causing heavy contamination of soil, surface water, and groundwater sources. Humans, animals, and the environment are frequently exposed to PFAS through food, water, consumer products, as well as waste streams from PFAS-manufacturing industries. PFAS are a large group of synthetic organic fluorinated compounds with widely diverse chemical structures that are extremely resistant to microbial degradation. Their persistence, toxicity to life on earth, bioaccumulation tendencies, and adverse health and ecological effects have earned them a "top priority pollutant" designation by regulatory bodies. Despite that a number of physicochemical methods exist for PFAS treatment, they suffer from major drawbacks regarding high costs, use of high energy and incomplete mineralization (destruction of the CF bond). Consequently, microbial degradation and enzymatic treatment of PFAS are highly sought after as they offer a complete, cheaper, sustainable, and environmentally friendly alternative. In this critical review, we provide an overview of the classification, properties, and interaction of PFAS within the environment relevant to microbial degradation. We discuss latest developments in the biodegradation of PFAS by microbes, transformation routes, transformation products and degradative enzymes. Finally, we highlight the existing challenges, limitations, and prospects of bioremediation approaches in treating PFAS and proffer possible solutions and future research directions.
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Affiliation(s)
- Ashenafi Berhanu
- Biofuels Institute, School of Environmental and Safety Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China; Haramaya Institute of Technology, Department of Chemical Engineering, Haramaya University, Dire Dawa, Ethiopia
| | - Ishmael Mutanda
- Biofuels Institute, School of Environmental and Safety Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Ji Taolin
- Biofuels Institute, School of Environmental and Safety Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Majjid A Qaria
- Biofuels Institute, School of Environmental and Safety Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Bin Yang
- Bioproducts, Sciences and Engineering Laboratory, Department of Biological Systems Engineering, Washington State University, Richland, WA 99354, USA
| | - Daochen Zhu
- Biofuels Institute, School of Environmental and Safety Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China.
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26
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Enhanced bioremediation of oil-contaminated soil in a slurry bioreactor by H 2O 2-stimulation of oil-degrading/biosurfactant-generating bacteria: performance optimization and bacterial metagenomics. Biodegradation 2023; 34:83-101. [PMID: 36592294 DOI: 10.1007/s10532-022-10008-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2022] [Accepted: 12/12/2022] [Indexed: 01/03/2023]
Abstract
Oil-contaminated soil is the main challenge for oil-rich countries, and this study aimed to investigate the performance of the H2O2-stimulated slurry bioreactor for the bioremediation of real oil-contaminated soil. The effect of biomass concentration, soil to water (S/W) ratio, slurry temperature, pH, and H2O2 concentration were optimized for the removal of total petroleum hydrocarbons (TPH) from oil-contaminated soil. TPH removal efficiency, biosurfactants production, and peroxidase and dehydrogenase activities were measured. The optimum conditions for the complete biodegradation of 32 [Formula: see text] in the slurry bioreactor during 6 days were biomass of 2250 mg/L, S/W ratio of 20%, the temperature of 30 °C, pH of 7, and an H2O2 concentration of 120 mg/L. The highest peroxidase, dehydrogenase, surfactin, and rhamnolipid formation were also obtained under optimum conditions. The results pointed out that complete biodegradation of 32 g/kg of TPH in oil-contaminated soil at a short reaction time of 6 days is achievable in the developed process operated under optimum conditions. The GC/FID analysis of solid and liquid phases showed that the bioprocess completely biodegraded the different TPH fractions. H2O2 efficiently stimulated the biosurfactant-generating bacteria to produce peroxidase and thereby accelerating the bioremediation rate. Accordingly, an H2O2-mediated slurry bioreactor inoculated with biosurfactant/peroxidase-generating bacteria is a promising technique for cleaning up oil-contaminated soils.
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27
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Zhu X, Liu J, Li L, Zhen G, Lu X, Zhang J, Liu H, Zhou Z, Wu Z, Zhang X. Prospects for humic acids treatment and recovery in wastewater: A review. CHEMOSPHERE 2023; 312:137193. [PMID: 36370766 DOI: 10.1016/j.chemosphere.2022.137193] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 10/26/2022] [Accepted: 11/05/2022] [Indexed: 06/16/2023]
Abstract
Clean water shortages require the reuse of wastewater. The presence of organic substances such as humic acids in wastewater makes the water treatment process more difficult. Humic acids can significantly affect the removal of heavy metals and other such toxins. Humic acids is formed by the decomposition and transformation of animal and plant remains by microorganisms, and naturally exists in soil and water. It is necessary to degrade and remove humic acids from wastewater. As it seriously human health, effective technologies for removing humic acids from wastewater have attracted great interest over the past decades. This study compared existing techniques for removing humic acids from wastewater, as well as their limitations. Physicochemical treatments including filtration and oxidation are basic and key approaches to removing humic acids. Biological treatments including enzyme and fungi-mediated humic acids degradation are economically feasible but require some scalability. In conclusion, the integrated treatment processes are more significant options for the effective removal of humic acids from wastewater. In addition, humic acids have rich utilization values. It can improve the soil, increase crop yields, and promote the removal of pollutants.
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Affiliation(s)
- Xuefeng Zhu
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai, 200093, PR China.
| | - Jiadong Liu
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai, 200093, PR China
| | - Liang Li
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai, 200093, PR China
| | - Guangyin Zhen
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, 200241, PR China
| | - Xueqin Lu
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, 200241, PR China
| | - Jie Zhang
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai, 200092, PR China
| | - Hongbo Liu
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai, 200093, PR China.
| | - Zhen Zhou
- College of Environmental and Chemical Engineering, Shanghai University of Electric Power, Shanghai, 200090, PR China
| | - Zhichao Wu
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai, 200092, PR China
| | - Xuedong Zhang
- Department of Environmental Engineering, Faculty of Environment and Civil Engineering, Jiangnan University, Wuxi, 214122, PR China.
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28
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Pande V, Joshi T, Pandey SC, Sati D, Mathpal S, Pande V, Chandra S, Samant M. Molecular docking and molecular dynamics simulation approaches for evaluation of laccase-mediated biodegradation of various industrial dyes. J Biomol Struct Dyn 2022; 40:12461-12471. [PMID: 34459700 DOI: 10.1080/07391102.2021.1971564] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Dyes are being increasingly utilized across the globe, but there is no appropriate method of bioremediation for their full mineralization from the environment. Laccases are key enzymes that help microbes to degrade dyes as well as their intermediate metabolites. Various dyes have been reported to be degraded by bacteria, but it is still unclear how these enzymes function during dye degradation. To effectively eradicate toxic dyes from the system, it is essential to understand the molecular function of enzymes. As a result, the interaction of laccase with different toxic dyes was investigated using molecular docking. Based on the highest binding energy we have screened ten dyes with positive interaction with laccase. Evaluating the MD simulation results, three out of ten dyes were more stable as potential targets for degradation by laccase of Bacillus subtilis. As a result, subsequent research focused solely on the results of three substrates: pigment red, fuchsin base, and Sudan IV. Analysis of MD simulation revealed that pigments red 23, fuchsin base, and Sudan IV form hydrogen and hydrophobic bond as well as Vander Waals interactions with the active site of laccase to keep it stable in aqueous solution. The conformation of laccase is greatly altered by the inclusion of all three substrates in the active site. The MD simulation findings show that laccase complexes remain stable throughout the catalytic reaction. Therefore, this research provides a molecular understanding of laccase expression and its role in the bioremediation of the pigments red 23, fuchsin base, and Sudan IV.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Veni Pande
- Cell and Molecular Biology Laboratory, Department of Zoology (DST-FIST sponsored), Kumaun University, Almora, Uttarakhand, India.,Department of Biotechnology, Kumaun University, Bhimtal, Uttarakhand, India
| | - Tushar Joshi
- Department of Biotechnology, Kumaun University, Bhimtal, Uttarakhand, India
| | - Satish Chandra Pandey
- Cell and Molecular Biology Laboratory, Department of Zoology (DST-FIST sponsored), Kumaun University, Almora, Uttarakhand, India.,Department of Biotechnology, Kumaun University, Bhimtal, Uttarakhand, India
| | - Diksha Sati
- Cell and Molecular Biology Laboratory, Department of Zoology (DST-FIST sponsored), Kumaun University, Almora, Uttarakhand, India
| | - Shalini Mathpal
- Department of Biotechnology, Kumaun University, Bhimtal, Uttarakhand, India
| | - Veena Pande
- Department of Biotechnology, Kumaun University, Bhimtal, Uttarakhand, India
| | - Subhash Chandra
- Computational Biology & Biotechnology Laboratory, Department of Botany, Soban Singh Jeena University, Almora, Uttarakhand, India
| | - Mukesh Samant
- Cell and Molecular Biology Laboratory, Department of Zoology (DST-FIST sponsored), Kumaun University, Almora, Uttarakhand, India
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29
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Sutaoney P, Pandya S, Gajarlwar D, Joshi V, Ghosh P. Feasibility and potential of laccase-based enzyme in wastewater treatment through sustainable approach: A review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:86499-86527. [PMID: 35771325 DOI: 10.1007/s11356-022-21565-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Accepted: 06/14/2022] [Indexed: 06/15/2023]
Abstract
The worldwide increase in metropolitan cities and rise in industrialization have resulted in the assimilation of hazardous pollutants into the ecosystems. Different physical, chemical and biological techniques have been employed to remove these toxins from water bodies. Several bioprocess applications using microbes and their enzymes are utilized to achieve the goal. Biocatalysts, such as laccases, are employed explicitly to deplete a variety of organic pollutants. However, the degradation of contaminants using biocatalysts has many disadvantages concerning the stability and activity of the enzyme. Hence, they are immobilized on different supports to improve the enzyme kinetics and recyclability. Furthermore, standard wastewater treatment methods are not effective in eliminating all the contaminants. As a result, membrane separation technologies have emerged to overcome the limitations of traditional wastewater treatment methods. Moreover, enzymes immobilized onto these membranes have generated new avenues in wastewater purification technology. This review provides the latest information on laccases from diverse sources, their molecular framework and their mode of action. This report also gives information about various immobilization techniques and the application of membrane bioreactors to eliminate and biotransform hazardous contaminants. In a nutshell, laccases appear to be the most promising biocatalysts for green and cost-efficient wastewater treatment technologies.
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Affiliation(s)
- Priya Sutaoney
- Center for Basic Sciences, Pt. Ravishankar Shukla University, Raipur, Chhattisgarh, India
| | - Srishti Pandya
- Center for Basic Sciences, Pt. Ravishankar Shukla University, Raipur, Chhattisgarh, India
| | - Devashri Gajarlwar
- Center for Basic Sciences, Pt. Ravishankar Shukla University, Raipur, Chhattisgarh, India
| | - Veenu Joshi
- Center for Basic Sciences, Pt. Ravishankar Shukla University, Raipur, Chhattisgarh, India
| | - Prabir Ghosh
- Department of Chemical Engineering, NIT Raipur, Raipur, Chhattisgarh, India.
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30
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Ngara TR, Zeng P, Zhang H. mibPOPdb: An online database for microbial biodegradation of persistent organic pollutants. IMETA 2022; 1:e45. [PMID: 38867901 PMCID: PMC10989864 DOI: 10.1002/imt2.45] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Revised: 07/04/2022] [Accepted: 07/11/2022] [Indexed: 06/14/2024]
Abstract
Microbial biodegradation of persistent organic pollutants (POPs) is an attractive, ecofriendly, and cost-efficient clean-up technique for reclaiming POP-contaminated environments. In the last few decades, the number of publications documenting POP-degrading microbes, enzymes, and experimental data sets has continuously increased, necessitating the development of a dedicated web resource that catalogs consolidated information on POP-degrading microbes and tools to facilitate integrative analysis of POP degradation data sets. To address this knowledge gap, we developed the Microbial Biodegradation of Persistent Organic Pollutants Database (mibPOPdb) by accumulating microbial POP degradation information from the public domain and manually curating published scientific literature. Currently, in mibPOPdb, there are 9215 microbial strain entries, including 184 gene (sub)families, 100 enzymes, 48 biodegradation pathways, and 593 intermediate compounds identified in POP-biodegradation processes, and information on 32 toxic compounds listed under the Stockholm Convention environmental treaty. Besides the standard database functionalities, which include data searching, browsing, and retrieval of database entries, we provide a suite of bioinformatics services to facilitate comparative analysis of users' own data sets against mibPOPdb entries. Additionally, we built a Graph Neural Network-based prediction model for the biodegradability classification of chemicals. The predictive model exhibited a good biodegradability classification performance and high prediction accuracy. mibPOPdb is a free data-sharing platform designated to promote research in microbial-based biodegradation of POPs and fills a long-standing gap in environmental protection research. Database URL: http://mibpop.genome-mining.cn/.
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Affiliation(s)
- Tanyaradzwa R. Ngara
- Department of Biotechnology, College of Life Science and Technology, MOE KEY Laboratory of Molecular BiophysicsHuazhong University of Science and TechnologyWuhanChina
| | - Peiji Zeng
- Department of Biotechnology, College of Life Science and Technology, MOE KEY Laboratory of Molecular BiophysicsHuazhong University of Science and TechnologyWuhanChina
| | - Houjin Zhang
- Department of Biotechnology, College of Life Science and Technology, MOE KEY Laboratory of Molecular BiophysicsHuazhong University of Science and TechnologyWuhanChina
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31
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Aguilera Flores MM, Sánchez Castro MA, Ávila Vázquez V, Correa Aguado HC, García Torres J. Evaluation of the lipase from castor bean ( Ricinus Communis L.) as a potential agent for the remediation of used lubricating oil contaminated soils. JOURNAL OF ENVIRONMENTAL HEALTH SCIENCE & ENGINEERING 2022; 20:657-673. [PMID: 36406614 PMCID: PMC9672203 DOI: 10.1007/s40201-022-00806-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 02/16/2022] [Accepted: 05/30/2022] [Indexed: 06/16/2023]
Abstract
Bioremediation of hydrocarbons-contaminated soils, using enzymes, is considered an alternative technology for soil remediation, obtaining shorter remediation times, greater removal efficiencies, and less waste generation. The lipases from invasive plants such as castor bean (Ricinus Communis L.) could represent an opportunity for its application in this purpose. This paper reports the results of evaluating enzymatic treatment at different conditions for the remediation of used lubricating oil-contaminated soils. Four assays were performed for the removal of the contaminant in a soil sample: (1) natural attenuation and (2) biostimulation with urea (10% w/v), both used as blanks, (3) enzymatic treatment with lipases at ambient conditions (room temperature, soil pH) and (4) enzymatic treatment with lipases at ideal conditions (temperature 37 °C, pH 4.5). After seven weeks of treatment, removal percentages of 14.23 ± 1.92%, 35.71 ± 5.17%, 14.11 ± 6.71%, and 94.26 ± 1.91%, respectively, were obtained. The degradation of the contaminant was analyzed by Fourier-transform Infrared spectroscopy (FTIR) for each assay. Results show the potential of the lipases for catalyzing the degradation of this contaminant in the soil at ideal conditions, representing an alternative technology to be applied as treatment ex-situ. This paper is the first study known to show the utilization of castor bean lipase for the remediation of hydrocarbons-contaminated soils.
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Affiliation(s)
- Miguel Mauricio Aguilera Flores
- Environmental Engineering, Interdisciplinary Professional Unit of Engineering Campus Zacatecas, Instituto Politécnico Nacional, Blvd. del Bote 202 Cerro del Gato Ejido La Escondida, Col. Ciudad Administrativa, 98160 Zacatecas, Zac Mexico
| | - Manuel Alexis Sánchez Castro
- Environmental Engineering, Interdisciplinary Professional Unit of Engineering Campus Zacatecas, Instituto Politécnico Nacional, Blvd. del Bote 202 Cerro del Gato Ejido La Escondida, Col. Ciudad Administrativa, 98160 Zacatecas, Zac Mexico
| | - Verónica Ávila Vázquez
- Environmental Engineering, Interdisciplinary Professional Unit of Engineering Campus Zacatecas, Instituto Politécnico Nacional, Blvd. del Bote 202 Cerro del Gato Ejido La Escondida, Col. Ciudad Administrativa, 98160 Zacatecas, Zac Mexico
| | - Hans Christian Correa Aguado
- Environmental Engineering, Interdisciplinary Professional Unit of Engineering Campus Zacatecas, Instituto Politécnico Nacional, Blvd. del Bote 202 Cerro del Gato Ejido La Escondida, Col. Ciudad Administrativa, 98160 Zacatecas, Zac Mexico
| | - Jésica García Torres
- Environmental Engineering, Interdisciplinary Professional Unit of Engineering Campus Zacatecas, Instituto Politécnico Nacional, Blvd. del Bote 202 Cerro del Gato Ejido La Escondida, Col. Ciudad Administrativa, 98160 Zacatecas, Zac Mexico
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32
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Tamothran AM, Bhubalan K, Anuar ST, Curtis JM. The degradation and toxicity of commercially traded vegetable oils following spills in aquatic environment. ENVIRONMENTAL RESEARCH 2022; 214:113985. [PMID: 35970378 DOI: 10.1016/j.envres.2022.113985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Revised: 07/18/2022] [Accepted: 07/22/2022] [Indexed: 06/15/2023]
Abstract
The production of commodity and specialty vegetable oils is increasing every year to fulfill the ever-increasing demand where the trading of oils occurs primarily via sea shipping. Spills of vegetable oil into the aquatic environment may result in detrimental effects on aquatic ecosystems. Environmental degradation of vegetable oil spills occurs mainly via microbial activity, chemical oxidation, wave and wind actions. However, the polymerization of oils can hinder their ability to naturally degrade. Thus, human intervention in the form of both short- and long-term remediation, is desirable to reduce the effects of vegetable oil spills on aquatic ecosystems. Studies have been conducted to determine how the type and concentration of the vegetable oil contamination influence its toxicity on various organisms. Some studies show that the effect of vegetable oil spills is found to be relatively short-lived and to a certain extent increase the survivability of certain organisms. However, the integrated effect of vegetable oil spills on aquatic organisms and their environment is still being researched. This review summarizes the existing knowledge on the reported occurrences of vegetable oil spills, their degradation, and their toxicity towards the surrounding aquatic environment which would be helpful in the knowledge transfer of remediation of vegetable oils.
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Affiliation(s)
| | - Kesaven Bhubalan
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia; Institute of Marine Biotechnology, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia; Ocean Pollution and Ecotoxicology Research Group, Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia.
| | - Sabiqah Tuan Anuar
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Jonathan M Curtis
- Lipid Chemistry Group, Dept. of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, T6G 2P5, Canada
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33
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Mohammadi SA, Najafi H, Zolgharnian S, Sharifian S, Asasian-Kolur N. Biological oxidation methods for the removal of organic and inorganic contaminants from wastewater: A comprehensive review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 843:157026. [PMID: 35772531 DOI: 10.1016/j.scitotenv.2022.157026] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2022] [Revised: 06/03/2022] [Accepted: 06/24/2022] [Indexed: 06/15/2023]
Abstract
Enzyme-based bioremediation is a simple, cost-effective, and environmentally friendly method for isolating and removing a wide range of environmental pollutants. This study is a comprehensive review of recent studies on the oxidation of pollutants by biological oxidation methods, performed individually or in combination with other methods. The main bio-oxidants capable of removing all types of pollutants, such as organic and inorganic molecules, from fungi, bacteria, algae, and plants, and different types of enzymes, as well as the removal mechanisms, were investigated. The use of mediators and modification methods to improve the performance of microorganisms and their resistance under harsh real wastewater conditions was discussed, and numerous case studies were presented and compared. The advantages and disadvantages of conventional and novel immobilization methods, and the development of enzyme engineering to adjust the content and properties of the desired enzymes, were also explained. The optimal operating parameters such as temperature and pH, which usually lead to the best performance, were presented. A detailed overview of the different combination processes was also given, including bio-oxidation in coincident or consecutive combination with adsorption, advanced oxidation processes, and membrane separation. One of the most important issues that this study has addressed is the removal of both organic and inorganic contaminants, taking into account the actual wastewaters and the economic aspect.
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Affiliation(s)
- Seyed Amin Mohammadi
- Fouman Faculty of Engineering, College of Engineering, University of Tehran, Fouman 43581-39115, Iran
| | - Hanieh Najafi
- Fouman Faculty of Engineering, College of Engineering, University of Tehran, Fouman 43581-39115, Iran
| | - Sheida Zolgharnian
- TUM Campus Straubing for Biotechnology and Sustainability, Technical University of Munich, Schulgasse 16, 94315 Straubing, Germany
| | - Seyedmehdi Sharifian
- Fouman Faculty of Engineering, College of Engineering, University of Tehran, Fouman 43581-39115, Iran
| | - Neda Asasian-Kolur
- Fouman Faculty of Engineering, College of Engineering, University of Tehran, Fouman 43581-39115, Iran.
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Anand U, Vaishnav A, Sharma SK, Sahu J, Ahmad S, Sunita K, Suresh S, Dey A, Bontempi E, Singh AK, Proćków J, Shukla AK. Current advances and research prospects for agricultural and industrial uses of microbial strains available in world collections. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 842:156641. [PMID: 35700781 DOI: 10.1016/j.scitotenv.2022.156641] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 06/08/2022] [Accepted: 06/08/2022] [Indexed: 06/15/2023]
Abstract
Microorganisms are an important component of the ecosystem and have an enormous impact on human lives. Moreover, microorganisms are considered to have desirable effects on other co-existing species in a variety of habitats, such as agriculture and industries. In this way, they also have enormous environmental applications. Hence, collections of microorganisms with specific traits are a crucial step in developing new technologies to harness the microbial potential. Microbial culture collections (MCCs) are a repository for the preservation of a large variety of microbial species distributed throughout the world. In this context, culture collections (CCs) and microbial biological resource centres (mBRCs) are vital for the safeguarding and circulation of biological resources, as well as for the progress of the life sciences. Ex situ conservation of microorganisms tagged with specific traits in the collections is the crucial step in developing new technologies to harness their potential. Type strains are mainly used in taxonomic study, whereas reference strains are used for agricultural, biotechnological, pharmaceutical research and commercial work. Despite the tremendous potential in microbiological research, little effort has been made in the true sense to harness the potential of conserved microorganisms. This review highlights (1) the importance of available global microbial collections for man and (2) the use of these resources in different research and applications in agriculture, biotechnology, and industry. In addition, an extensive literature survey was carried out on preserved microorganisms from different collection centres using the Web of Science (WoS) and SCOPUS. This review also emphasizes knowledge gaps and future perspectives. Finally, this study provides a critical analysis of the current and future roles of microorganisms available in culture collections for different sustainable agricultural and industrial applications. This work highlights target-specific potential microbial strains that have multiple important metabolic and genetic traits for future research and use.
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Affiliation(s)
- Uttpal Anand
- Department of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - Anukool Vaishnav
- Department of Biotechnology, Institute of Applied Sciences & Humanities, GLA University, Mathura, Uttar Pradesh 281406, India; Department of Plant and Microbial Biology, University of Zürich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland; Plant-Soil Interaction Group, Agroscope (Reckenholz), Reckenholzstrasse 191, 8046 Zürich, Switzerland
| | - Sushil K Sharma
- National Agriculturally Important Microbial Culture Collection (NAIMCC), ICAR-National Bureau of Agriculturally Important Microorganisms (ICAR-NBAIM), Mau 275 103, Uttar Pradesh, India.
| | - Jagajjit Sahu
- GyanArras Academy, Gothapatna, Malipada, Bhubaneswar, Odisha 751029, India
| | - Sarfaraz Ahmad
- Department of Botany, Jai Prakash University, Saran, Chhapra 841301, Bihar, India
| | - Kumari Sunita
- Department of Botany, Faculty of Science, Deen Dayal Upadhyay Gorakhpur University, Gorakhpur, Uttar Pradesh 273009, India
| | - S Suresh
- Department of Chemical Engineering, Maulana Azad National Institute of Technology, Bhopal 462 003, Madhya Pradesh, India
| | - Abhijit Dey
- Department of Life Sciences, Presidency University, 86/1 College Street, Kolkata 700073, West Bengal, India
| | - Elza Bontempi
- INSTM and Chemistry for Technologies Laboratory, Department of Mechanical and Industrial Engineering, University of Brescia, Via Branze, 38, 25123 Brescia, Italy
| | - Amit Kishore Singh
- Department of Botany, Bhagalpur National College, (A Constituent unit of Tilka Manjhi Bhagalpur University), Bhagalpur 812007, Bihar, India
| | - Jarosław Proćków
- Department of Plant Biology, Institute of Environmental Biology, Wrocław University of Environmental and Life Sciences, Kożuchowska 5b, 51-631 Wrocław, Poland.
| | - Awadhesh Kumar Shukla
- Department of Botany, K.S. Saket P.G. College, Ayodhya (affiliated to Dr. Rammanohar Lohia Avadh University, Ayodhya) 224123, Uttar Pradesh, India.
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Anboo S, Lau SY, Kansedo J, Yap P, Hadibarata T, Jeevanandam J, Kamaruddin AH. Recent advancements in enzyme-incorporated nanomaterials: Synthesis, mechanistic formation, and applications. Biotechnol Bioeng 2022; 119:2609-2638. [PMID: 35851660 PMCID: PMC9543334 DOI: 10.1002/bit.28185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 06/21/2022] [Accepted: 07/15/2022] [Indexed: 11/09/2022]
Abstract
Over the past decade, nanotechnology has been developed and employed across various entities. Among the numerous nanostructured material types, enzyme-incorporated nanomaterials have shown great potential in various fields, as an alternative to biologically derived as well as synthetically developed hybrid structures. The mechanism of incorporating enzyme onto a nanostructure depends on several factors including the method of immobilization, type of nanomaterial, as well as operational and environmental conditions. The prospects of enzyme-incorporated nanomaterials have shown promising results across various applications, such as biocatalysts, biosensors, drug therapy, and wastewater treatment. This is due to their excellent ability to exhibit chemical and physical properties such as high surface-to-volume ratio, recovery and/or reusability rates, sensitivity, response scale, and stable catalytic activity across wide operating conditions. In this review, the evolution of enzyme-incorporated nanomaterials along with their impact on our society due to its state-of-the-art properties, and its significance across different industrial applications are discussed. In addition, the weakness and future prospects of enzyme-incorporated nanomaterials were also discussed to guide scientists for futuristic research and development in this field.
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Affiliation(s)
- Shamini Anboo
- Department of Chemical EngineeringFaculty of Engineering and Science, Curtin University MalaysiaMiriSarawakMalaysia
| | - Sie Yon Lau
- Department of Chemical EngineeringFaculty of Engineering and Science, Curtin University MalaysiaMiriSarawakMalaysia
| | - Jibrail Kansedo
- Department of Chemical EngineeringFaculty of Engineering and Science, Curtin University MalaysiaMiriSarawakMalaysia
| | - Pow‐Seng Yap
- Department of Civil EngineeringXi'an Jiaotong‐Liverpool UniversitySuzhouChina
| | - Tony Hadibarata
- Department of Chemical EngineeringFaculty of Engineering and Science, Curtin University MalaysiaMiriSarawakMalaysia
| | | | - Azlina H. Kamaruddin
- School of Chemical EngineeringUniversiti Sains MalaysiaSeberang Perai SelatanPenangMalaysia
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Nanjani S, Patel Z, Sharma S, Pandita PR, Pandit R, Joshi MN, Patel AK, Joshi C. Transcriptome profiling reveals upregulation of benzoate degradation and related genes in Pseudomonas aeruginosa D6 during textile dye degradation. ENVIRONMENTAL RESEARCH 2022; 212:113288. [PMID: 35427588 DOI: 10.1016/j.envres.2022.113288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Revised: 03/10/2022] [Accepted: 04/08/2022] [Indexed: 06/14/2023]
Abstract
An upsurge in textile dye pollution has demanded immediate efforts to develop an optimum technology for their bioremediation. However, the molecular mechanism underpinning aerobic decolorization of dyes is still in its infancy. Thus, in the current work, the intricacies of aerobic remediation of textile dyes by Pseudomonas aeruginosa D6 were understood via a transcriptomic approach. The bacterium isolated from the sludge sample of a common effluent treatment plant was able to decolorize 54.42, 57.66, 50.84 and 65.86% of 100 mg L-1 of four different dyes i.e., TD01, TD04, TD05, and TD06, respectively. The maximum decolorization was achieved within six days and thus, the first and sixth day of incubation were selected for transcriptome analysis at the early and late phase of the decolorization, respectively. The expression profiles of all samples were compared to gain insight into the dye-specific response of bacterium and it was found that it behaved most uniquely in the presence of the dye TD01. Several genes critical to core metabolic processes like the TCA cycle, glycolysis, pentose phosphate pathway, translation, cell motility etc. Were found to be overexpressed in the presence of dyes. Interestingly, in response to dyes, the benzoate degradation pathway was significantly upregulated in the bacterium as compared to control (i.e., bacterium without dye). Thus, seven genes contributing to the induction of the same were further studied by RT-qPCR analysis. Overall, the involvement of the benzoate pathway implies the appearance of aromatic intermediates during decolorization, which in turn infers dye degradation.
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Affiliation(s)
- Sandhya Nanjani
- Gujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (DST), 6th Floor, MS Building, Gandhinagar, Gujarat, 382011, India
| | - Zarna Patel
- Gujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (DST), 6th Floor, MS Building, Gandhinagar, Gujarat, 382011, India
| | - Shruti Sharma
- Gujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (DST), 6th Floor, MS Building, Gandhinagar, Gujarat, 382011, India
| | - Priti Raj Pandita
- Gujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (DST), 6th Floor, MS Building, Gandhinagar, Gujarat, 382011, India
| | - Ramesh Pandit
- Gujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (DST), 6th Floor, MS Building, Gandhinagar, Gujarat, 382011, India
| | - Madhvi N Joshi
- Gujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (DST), 6th Floor, MS Building, Gandhinagar, Gujarat, 382011, India.
| | - Amrutlal K Patel
- Gujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (DST), 6th Floor, MS Building, Gandhinagar, Gujarat, 382011, India.
| | - Chaitanya Joshi
- Gujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (DST), 6th Floor, MS Building, Gandhinagar, Gujarat, 382011, India
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Saikia S, Yadav M, Hoque RA, Yadav HS. Bioremediation mediated by manganese peroxidase – An overview. BIOCATAL BIOTRANSFOR 2022. [DOI: 10.1080/10242422.2022.2113517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Affiliation(s)
- Shilpa Saikia
- Department of Chemistry, North Eastern Regional Institute of Science and Technology, Itanagar, India
| | - Meera Yadav
- Department of Chemistry, North Eastern Regional Institute of Science and Technology, Itanagar, India
| | - Rohida Amin Hoque
- Department of Chemistry, North Eastern Regional Institute of Science and Technology, Itanagar, India
| | - Hardeo Singh Yadav
- Department of Chemistry, North Eastern Regional Institute of Science and Technology, Itanagar, India
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Medić AB, Karadžić IM. Pseudomonas in environmental bioremediation of hydrocarbons and phenolic compounds- key catabolic degradation enzymes and new analytical platforms for comprehensive investigation. World J Microbiol Biotechnol 2022; 38:165. [PMID: 35861883 DOI: 10.1007/s11274-022-03349-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Accepted: 06/26/2022] [Indexed: 10/17/2022]
Abstract
Pollution of the environment with petroleum hydrocarbons and phenolic compounds is one of the biggest problems in the age of industrialization and high technology. Species of the genus Pseudomonas, present in almost all hydrocarbon-contaminated areas, play a particular role in biodegradation of these xenobiotics, as the genus has the potential to decompose various hydrocarbons and phenolic compounds, using them as its only source of carbon. Plasticity of carbon metabolism is one of the adaptive strategies used by Pseudomonas to survive exposure to toxic organic compounds, so a good knowledge of its mechanisms of degradation enables the development of new strategies for the treatment of pollutants in the environment. The capacity of microorganisms to metabolize aromatic compounds has contributed to the evolutionally conserved oxygenases. Regardless of the differences in structure and complexity between mono- and polycyclic aromatic hydrocarbons, all these compounds are thermodynamically stable and chemically inert, so for their decomposition, ring activation by oxygenases is crucial. Genus Pseudomonas uses several upper and lower metabolic pathways to transform and degrade hydrocarbons, phenolic compounds, and petroleum hydrocarbons. Data obtained from newly developed omics analytical platforms have enormous potential not only to facilitate our understanding of processes at the molecular level but also enable us to instigate and monitor complex biodegradations by Pseudomonas. Biotechnological application of aromatic metabolic pathways in Pseudomonas to bioremediation of environments polluted with crude oil, biovalorization of lignin for production of bioplastics, biofuel, and bio-based chemicals, as well as Pseudomonas-assisted phytoremediation are also considered.
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Affiliation(s)
- Ana B Medić
- University of Belgrade, Faculty of Medicine, Department of Chemistry, Belgrade, Serbia.
| | - Ivanka M Karadžić
- University of Belgrade, Faculty of Medicine, Department of Chemistry, Belgrade, Serbia
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Shaha CM, Dar MA, Pandit RS. Mining the diversity and functional profile of bacterial symbionts from the larvae of Chironomus circumdatus (bloodworms). Folia Microbiol (Praha) 2022; 67:861-872. [PMID: 35729301 DOI: 10.1007/s12223-022-00984-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 06/10/2022] [Indexed: 11/24/2022]
Abstract
Chironomids are the most abundant aquatic insects in freshwater habitats that can survive in extreme conditions. In this study, as the microbiome provides extended genotype to the host to perform various functions, we explored the microbiota of the Chironomus circumdatus larvae to find out the putative role played by the symbiotic bacteria for the host. The metabarcoding analyses of the larvae revealed that the insect harbors 1771 phylotypes. Out of the various microbial communities found, the majority corresponded to the phyla Proteobacteria (52.59%) and Actinobacteria (20.56%), respectively. The midges also harbored Klebsiella (2.57%), Enterobacter (1.32%), Bacillus (2.29%), and Acinetobacter (2.13%) genera that are involved in detoxification of xenobiotics present in the water. The presence of radiation-resistant genera like Deinococcus, including bacterial species like radiodurans, a highly radiation-resistant bacterium, indicates its potential to support the host's ability to sustain in adverse environments. The functional profiling of the bacteria showed the relative abundance of many enzyme groups, such as transferases (40.62%), oxidoreductases (23.49%), and hydrolases (3.77%). The results indicate that the larvae harbor a considerable variety of bacteria that help the host adapt and survive in the polluted waters. The present study provides thorough insights into the microbiome of the C. circumdatus larvae that can be exploited for the bioremediation of certain pollutants through biomimetic strategies. It also gives us a wake-up call to take a good look at the guts of these disease-carrying insects' inabilities to spread deadly human diseases.
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Affiliation(s)
- Chaitali M Shaha
- Department of Zoology, Savitribai Phule Pune University, Ganeshkhind, Pune, 411007, India
| | - Mudasir A Dar
- School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, China
| | - Radhakrishna S Pandit
- Department of Zoology, Savitribai Phule Pune University, Ganeshkhind, Pune, 411007, India.
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40
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Sonawane JM, Rai AK, Sharma M, Tripathi M, Prasad R. Microbial biofilms: Recent advances and progress in environmental bioremediation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 824:153843. [PMID: 35176385 DOI: 10.1016/j.scitotenv.2022.153843] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 01/15/2022] [Accepted: 02/09/2022] [Indexed: 05/21/2023]
Abstract
Microbial biofilms are formed by adherence of the bacteria through their secreted polymer matrices. The major constituents of the polymer matrices are extracellular DNAs, proteins, polysaccharides. Biofilms have exhibited a promising role in the area of bioremediation. These activities can be further improved by tuning the parameters like quorum sensing, characteristics of the adhesion surface, and other environmental factors. Organic pollutants have created a global concern because of their long-term toxicity on human, marine, and animal life. These contaminants are not easily degradable and continue to prevail in the environment for an extended period. Biofilms are being used for the remediation of different pollutants, among which organic pollutants have been of significance. The bioremediation of organic contaminants using biofilms is an eco-friendly, cheap, and green process. However, the development of this technology demands knowledge on the mechanism of action of the microbes to form the biofilm, types of specific bacteria or fungi responsible for the degradation of a particular organic compound, and the mechanistic role of the biofilm in the degradation of the pollutants. This review puts forth a comprehensive summary of the role of microbial biofilms in the bioremediation of different environment-threatening organic pollutants.
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Affiliation(s)
- Jayesh M Sonawane
- Department of Chemistry, Alexandre-Vachon Pavilion, Laval University, Quebec G1V 0A6, Canada
| | - Ashutosh Kumar Rai
- Department of Biochemistry, College of Medicine, Imam Abdulrahman Bin Faisal University, Dammam 31441, Saudi Arabia
| | - Minaxi Sharma
- Department of Applied Biology, University of Science and Technology, Meghalaya, 793101, India
| | - Manikant Tripathi
- Biotechnology Program, Dr. Rammanohar Lohia Avadh University, Ayodhya 224001, Uttar Pradesh, India
| | - Ram Prasad
- Department of Botany, Mahatma Gandhi Central University, Motihari 845401, Bihar, India.
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Charupanit K, Tipmanee V, Sutthibutpong T, Limsakul P. In Silico Identification of Potential Sites for a Plastic-Degrading Enzyme by a Reverse Screening through the Protein Sequence Space and Molecular Dynamics Simulations. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27103353. [PMID: 35630830 PMCID: PMC9143596 DOI: 10.3390/molecules27103353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 05/19/2022] [Accepted: 05/20/2022] [Indexed: 11/16/2022]
Abstract
The accumulation of polyethylene terephthalate (PET) seriously harms the environment because of its high resistance to degradation. The recent discovery of the bacteria-secreted biodegradation enzyme, PETase, sheds light on PET recycling; however, the degradation efficiency is far from practical use. Here, in silico alanine scanning mutagenesis (ASM) and site-saturation mutagenesis (SSM) were employed to construct the protein sequence space from binding energy of the PETase–PET interaction to identify the number and position of mutation sites and their appropriate side-chain properties that could improve the PETase–PET interaction. The binding mechanisms of the potential PETase variant were investigated through atomistic molecular dynamics simulations. The results show that up to two mutation sites of PETase are preferable for use in protein engineering to enhance the PETase activity, and the proper side chain property depends on the mutation sites. The predicted variants agree well with prior experimental studies. Particularly, the PETase variants with S238C or Q119F could be a potential candidate for improving PETase. Our combination of in silico ASM and SSM could serve as an alternative protocol for protein engineering because of its simplicity and reliability. In addition, our findings could lead to PETase improvement, offering an important contribution towards a sustainable future.
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Affiliation(s)
- Krit Charupanit
- Department of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Songkhla 90110, Thailand; (K.C.); (V.T.)
| | - Varomyalin Tipmanee
- Department of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Songkhla 90110, Thailand; (K.C.); (V.T.)
| | - Thana Sutthibutpong
- Theoretical and Computational Physics Group, Department of Physics, Faculty of Science, King Mongkut’s University of Technology Thonburi (KMUTT), Bangkok 10140, Thailand;
- Center of Excellence in Theoretical and Computational Science (TaCS-CoE), Faculty of Science, King Mongkut’s University of Technology Thonburi (KMUTT), Bangkok 10140, Thailand
| | - Praopim Limsakul
- Division of Physical Science, Faculty of Science, Prince of Songkla University, Songkhla 90110, Thailand
- Center of Excellence for Trace Analysis and Biosensor (TAB-CoE), Faculty of Science, Prince of Songkla University, Songkhla 90110, Thailand
- Correspondence:
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Haripriyan U, Gopinath KP, Arun J, Govarthanan M. Bioremediation of organic pollutants: a mini review on current and critical strategies for wastewater treatment. Arch Microbiol 2022; 204:286. [PMID: 35478273 DOI: 10.1007/s00203-022-02907-9] [Citation(s) in RCA: 29] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 03/31/2022] [Accepted: 04/06/2022] [Indexed: 11/25/2022]
Abstract
The release and prevalence of organic pollutants in an aqueous environment due to industrial discharges, agricultural operations, or inappropriate waste disposal is a huge threat to attaining sustainable development. As a result, wastewater treatment has attained a huge scope as it is evident from the number of articles published in recent years. Among the various techniques, bioremediation is one of the economical and eco-friendly means of wastewater treatment for the removal of organic pollutants. Microbial community and microalgae are the front runners of this process as they result in treated water and sludge or biomass formation. This mini review put forwards the types of organic pollutants and the bioremediation strategies using microbes and micro-algae, the role of genetically engineered microbes on the bio-remediation of organic pollutants and the recent applications of Artificial Intelligence (AI) techniques that have been implemented for improving the efficiency of the methods. The gap between practicability and applicability of the bioremediation process was also identified in this review. In addition, the economics and future research needs are discussed as outcomes.
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Affiliation(s)
- U Haripriyan
- Department of Chemical Engineering, A. C. Tech Campus, Anna University, Chennai, 600025, India
- Department of Chemical Engineering, Swinburne University of Technology, Sarawak Campus, 93350, Kuching, Malaysia
| | - K P Gopinath
- Department of Sustainable Engineering, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai, 602105, India
| | - J Arun
- Centre for Waste Management, Sathyabama Institute of Science and Technology, Chennai, 600119, India.
| | - Muthusamy Govarthanan
- Department of Environmental Engineering, Kyungpook National University, 41566, Daegu, Republic of Korea.
- Department of Biomaterials, Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Sciences, Chennai, 600 077, India.
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Thathola P, Agnihotri V, Pandey A, Upadhyay SK. Biodegradation of bisphenol A using psychrotolerant bacterial strain Pseudomonas palleroniana GBPI_508. Arch Microbiol 2022; 204:272. [PMID: 35445985 DOI: 10.1007/s00203-022-02885-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Revised: 03/10/2022] [Accepted: 03/31/2022] [Indexed: 11/25/2022]
Abstract
A psychrotolerant bacterial strain of Pseudomonas sp. (P. palleroniana GBPI_508), isolated from the Indian Himalayan region, is studied for analyzing its potential for degrading bisphenol A (BPA). Response surface methodology using Box-Behnken design was used to statistically optimize the environmental factors during BPA degradation and the maximum degradation (97%) was obtained at optimum conditions of mineral salt media pH 9, experimental temperature 25 °C, an inoculum volume of 10% (v/v), and agitation speed 130 rpm at the BPA concentration 270 mg L-1. The Monod model was used for understanding bacterial degradation kinetics, and 37.5 mg-1 half saturation coefficient (KS) and 0.989 regression coefficient (R2) were obtained. Besides, the utmost specific growth rate µmax was witnessed as 0.080 h-1 with the GBPI_508 during BPA degradation. Metabolic intermediates detected in this study by GC-MS were identified as valeric acid, propionic acid, diglycolic acid, and phenol. The psychrotolerant bacterial strain of Pseudomonas sp. (P. palleroniana GBPI_508), isolated from the Indian Himalayan region has shown good potential for remediation of BPA at variable conditions.
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Affiliation(s)
- Pooja Thathola
- Centre for Land and Water Resource Management, G. B. Pant National Institute of Himalayan Environment, Kosi-Katarmal, Almora, 263643, Uttarakhand, India
| | - Vasudha Agnihotri
- Centre for Land and Water Resource Management, G. B. Pant National Institute of Himalayan Environment, Kosi-Katarmal, Almora, 263643, Uttarakhand, India.
| | - Anita Pandey
- Department of Biotechnology, Graphic Era Deemed to be University, Bell Road, Clement Town, Dehra Dun, 248002, Uttarakhand, India
| | - Santosh Kumar Upadhyay
- Department of Biotechnology, Kumaun University, Bhimtal Campus, Bhimtal, Nainital, 263136, Uttarakhand, India
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Gao Y, Shah K, Kwok I, Wang M, Rome LH, Mahendra S. Immobilized fungal enzymes: Innovations and potential applications in biodegradation and biosynthesis. Biotechnol Adv 2022; 57:107936. [PMID: 35276253 DOI: 10.1016/j.biotechadv.2022.107936] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 02/28/2022] [Accepted: 03/03/2022] [Indexed: 01/10/2023]
Abstract
Microbial enzymes catalyze various reactions inside and outside living cells. Among the widely studied enzymes, fungal enzymes have been used for some of the most diverse purposes, especially in bioremediation, biosynthesis, and many nature-inspired commercial applications. To improve their stability and catalytic ability, fungal enzymes are often immobilized on assorted materials, conventional as well as nanoscale. Recent advances in fungal enzyme immobilization provide effective and sustainable approaches to achieve improved environmental and commercial outcomes. This review aims to provide a comprehensive overview of commonly studied fungal enzymes and immobilization technologies. It also summarizes recent advances involving immobilized fungal enzymes for the degradation or assembly of compounds used in the manufacture of products, such as detergents, food additives, and fossil fuel alternatives. Furthermore, challenges and future directions are highlighted to offer new perspectives on improving existing technologies and addressing unexplored fields of applications.
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Affiliation(s)
- Yifan Gao
- Department of Civil and Environmental Engineering, University of California, Los Angeles, CA 90095, United States
| | - Kshitjia Shah
- Department of Civil and Environmental Engineering, University of California, Los Angeles, CA 90095, United States
| | - Ivy Kwok
- Department of Civil and Environmental Engineering, University of California, Los Angeles, CA 90095, United States
| | - Meng Wang
- Department of Civil and Environmental Engineering, University of Pittsburgh, Pittsburgh, PA 15260, United States
| | - Leonard H Rome
- Department of Biological Chemistry, David Geffen School of Medicine, University of California, Los Angeles, CA 90095, United States; California NanoSystems Institute, University of California, Los Angeles, CA 90095, United States
| | - Shaily Mahendra
- Department of Civil and Environmental Engineering, University of California, Los Angeles, CA 90095, United States; California NanoSystems Institute, University of California, Los Angeles, CA 90095, United States.
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Zhao S, Feng P, Yu Z, Zhou T, Gao T, Redina MM, Liu P, Li X. NahAa can convert naphthalene and reduce chromate simultaneously and immobilized on functional multiwall carbon nanotubes for wastewater treatment. CHEMOSPHERE 2022; 291:132934. [PMID: 34808199 DOI: 10.1016/j.chemosphere.2021.132934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2021] [Revised: 10/25/2021] [Accepted: 11/14/2021] [Indexed: 06/13/2023]
Abstract
Pseudomonas brassicacearum LZ-4 is a facultative anaerobic bacterium, can efficiently degrade naphthalene and reduce chromate simultaneously. In this study, we showed that the naphthalene degradation enzyme NahAa from P. brassicacearum LZ-4 can reduce Cr(VI). Heterologous expression in E. coli S17-1 along with RNA interference of NahAa in strain LZ-4 showed the enzyme can reduce chromate in vivo. In vitro, purified NahAa was identified and can catalyze Cr(VI) reduction by 64.2%. Flavin adenine dinucleotide (FAD) was identified as a cofactor of NahAa, which Cr(VI) could obtain electrons from NADH through NahAa-associated FAD for reduction. Immobilized NahAa on functional multi walled carbon nanotubes via physical adsorption method to produce a stable, high efficient composite MWCNT-NahAa. The maximum efficiency of MWCNT-NahAa composite was obtained in enzyme concentrations of 6 mg/mL and 20 min immobilization time. The optical reaction conditions for MWCNT-NahAa were pH 7.0 and 30 °C, still retaining 50% of its initial activities after five consecutive cycles. Application of composites in wastewater can reduce 90.4% Cr(VI), higher than free NahAa that was 63.5%. To our best knowledge, this is the first report immobilized enzyme in polycyclic aromatic hydrocarbons-degradation pathway for Cr(VI) wastewater treatment, providing a new insights on combined pollution remediation.
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Affiliation(s)
- Shuai Zhao
- Gansu Key Laboratory of Biomonitoring and Bioremediation for Environment Pollution, School of Life Sciences, Lanzhou University, 222 South Tianshui Rd, Lanzhou, 730000, Gansu, PR China
| | - Pengya Feng
- Gansu Key Laboratory of Biomonitoring and Bioremediation for Environment Pollution, School of Life Sciences, Lanzhou University, 222 South Tianshui Rd, Lanzhou, 730000, Gansu, PR China
| | - Zhengsheng Yu
- Gansu Key Laboratory of Biomonitoring and Bioremediation for Environment Pollution, School of Life Sciences, Lanzhou University, 222 South Tianshui Rd, Lanzhou, 730000, Gansu, PR China
| | - Tuoyu Zhou
- Gansu Key Laboratory of Biomonitoring and Bioremediation for Environment Pollution, School of Life Sciences, Lanzhou University, 222 South Tianshui Rd, Lanzhou, 730000, Gansu, PR China
| | - Tianpeng Gao
- School of Biological and Environmental Engineering, Xi'an University, Xi'an, 710065, PR China
| | | | - Pu Liu
- Gansu Key Laboratory of Biomonitoring and Bioremediation for Environment Pollution, School of Life Sciences, Lanzhou University, 222 South Tianshui Rd, Lanzhou, 730000, Gansu, PR China
| | - Xiangkai Li
- Gansu Key Laboratory of Biomonitoring and Bioremediation for Environment Pollution, School of Life Sciences, Lanzhou University, 222 South Tianshui Rd, Lanzhou, 730000, Gansu, PR China.
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Sharma A, Vázquez LAB, Hernández EOM, Becerril MYM, Oza G, Ahmed SSSJ, Ramalingam S, Iqbal HMN. Green remediation potential of immobilized oxidoreductases to treat halo-organic pollutants persist in wastewater and soil matrices - A way forward. CHEMOSPHERE 2022; 290:133305. [PMID: 34929272 DOI: 10.1016/j.chemosphere.2021.133305] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Revised: 12/11/2021] [Accepted: 12/12/2021] [Indexed: 02/08/2023]
Abstract
The alarming presence of hazardous halo-organic pollutants in wastewater and soils generated by industrial growth, pharmaceutical and agricultural activities is a major environmental concern that has drawn the attention of scientists. Unfortunately, the application of conventional technologies within hazardous materials remediation processes has radically failed due to their high cost and ineffectiveness. Consequently, the design of innovative and sustainable techniques to remove halo-organic contaminants from wastewater and soils is crucial. Altogether, these aspects have led to the search for safe and efficient alternatives for the treatment of contaminated matrices. In fact, over the last decades, the efficacy of immobilized oxidoreductases has been explored to achieve the removal of halo-organic pollutants from diverse tainted media. Several reports have indicated that these enzymatic constructs possess unique properties, such as high removal rates, improved stability, and excellent reusability, making them promising candidates for green remediation processes. Hence, in this current review, we present an insight of green remediation approaches based on the use of immobilized constructs of phenoloxidases (e.g., laccase and tyrosinase) and peroxidases (e.g., horseradish peroxidase, chloroperoxidase, and manganese peroxidase) for sustainable decontamination of wastewater and soil matrices from halo-organic pollutants, including 2,4-dichlorophenol, 4-chlorophenol, diclofenac, 2-chlorophenol, 2,4,6-trichlorophenol, among others.
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Affiliation(s)
- Ashutosh Sharma
- Tecnologico de Monterrey, School of Engineering and Sciences, Centre of Bioengineering, Campus Queretaro, 76130, Mexico.
| | - Luis Alberto Bravo Vázquez
- Tecnologico de Monterrey, School of Engineering and Sciences, Centre of Bioengineering, Campus Queretaro, 76130, Mexico
| | | | | | - Goldie Oza
- Centro de Investigación y Desarrollo Tecnológico en Electroquímica (CIDETEQ), Parque Tecnológico Querétaro S/n, Sanfandila. Pedro Escobedo, Querétaro, 76703, Mexico
| | - Shiek S S J Ahmed
- Faculty of Allied Health Sciences, Chettinad Academy of Research and Education, Kelambakkam, India
| | - Sathishkumar Ramalingam
- Plant Genetic Engineering Laboratory, Department of Biotechnology, Bharathiar University, Coimbatore, 641046, India
| | - Hafiz M N Iqbal
- Tecnologico de Monterrey, School of Engineering and Sciences, Monterrey, 64849, Mexico.
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Das A, Banik BK. Microwave-induced biocatalytic reactions toward medicinally important compounds. PHYSICAL SCIENCES REVIEWS 2022. [DOI: 10.1515/psr-2021-0064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Microwaves in the presence of enzymes are used to execute a number of reactions for the preparation of biologically active compounds. The success of microwave-induced enzymatic reactions depends on frequencies, field strength, waveform, duration, and modulation of the exposure. Enzymes under microwave irradiation become activated and this activation is sufficient to investigate simple to complex reactions that were not reported under these reaction conditions before. Enzymatic catalysis together with microwave technology and solvent-free chemical reaction is a nature-friendly procedure. The most interesting reactions that are performed by enzymes in the microwave are documented here with reference to examples that are related to medicinally active molecules.
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Affiliation(s)
- Aparna Das
- Department of Mathematics and Natural Sciences , College of Sciences and Human Studies, Prince Mohammad Bin Fahd University , Al Khobar 31952 , Kingdom of Saudi Arabia
| | - Bimal Krishna Banik
- Department of Mathematics and Natural Sciences , College of Sciences and Human Studies, Prince Mohammad Bin Fahd University , Al Khobar 31952 , Kingdom of Saudi Arabia
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Rathore S, Varshney A, Mohan S, Dahiya P. An innovative approach of bioremediation in enzymatic degradation of xenobiotics. Biotechnol Genet Eng Rev 2022; 38:1-32. [PMID: 35081881 DOI: 10.1080/02648725.2022.2027628] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Worldwide, environmental pollution due to a complex mixture of xenobiotics has become a serious concern. Several xenobiotic compounds cause environmental contamination due to their severe toxicity, prolonged exposure, and limited biodegradability. From the past few decades, microbial-assisted degradation (bioremediation) of xenobiotic pollutants has evolved as the most effective, eco-friendly, and valuable approach. Microorganisms have unique metabolism, the capability of genetic modification, diversity of enzymes, and various degradation pathways necessary for the bioremediation process. Microbial xenobiotic degradation is effective but a slow process that limits its application in bioremediation. However, the study of microbial enzymes for bioremediation is gaining global importance. Microbial enzymes have a huge ability to transform contaminants into non-toxic forms and thereby reduce environmental pollution. Recently, various advanced techniques, including metagenomics, proteomics, transcriptomics, metabolomics are effectively utilized for the characterization, metabolic machinery, new proteins, metabolic genes of microorganisms involved in the degradation process. These advanced molecular techniques provide a thorough understanding of the structural and functional aspects of complex microorganisms. This review gives a brief note on xenobiotics and their impact on the environment. Particular attention will be devoted to the class of pollutants and the enzymes such as cytochrome P450, dehydrogenase, laccase, hydrolase, protease, lipase, etc. capable of converting these pollutants into innocuous products. This review attempts to deliver knowledge on the role of various enzymes in the biodegradation of xenobiotic pollutants, along with the use of advanced technologies like recombinant DNA technology and Omics approaches to make the process more robust and effective.
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Affiliation(s)
| | - Ayushi Varshney
- Amity Institute of Biotechnology, Amity University Uttar Pradesh (AUUP), Noida, India
| | - Sumedha Mohan
- Amity Institute of Biotechnology, Amity University Uttar Pradesh (AUUP), Noida, India
| | - Praveen Dahiya
- Amity Institute of Biotechnology, Amity University Uttar Pradesh (AUUP), Noida, India
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Barbhuiya NH, Misra U, Singh SP. Biocatalytic membranes for combating the challenges of membrane fouling and micropollutants in water purification: A review. CHEMOSPHERE 2022; 286:131757. [PMID: 34371356 DOI: 10.1016/j.chemosphere.2021.131757] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2021] [Revised: 07/17/2021] [Accepted: 07/30/2021] [Indexed: 06/13/2023]
Abstract
Over the last few years, the list of water contaminants has grown tremendously due to many anthropogenic activities. Various conventional technologies are available for water and wastewater treatment. However, micropollutants of emerging concern (MEC) are posing a great threat due to their activity at trace concentration and poor removal efficiency by the conventional treatment processes. Advanced technology like membrane technology can remove MEC to some extent. However, issues like the different chemical properties of MEC, selectivity, and fouling of membranes can affect the removal efficiency. Moreover, the concentrate from the membrane filtration may need further treatment. Enzymatic degradation of pollutants and foulants is one of the green approaches for removing various contaminants from the water as well as mitigating membrane fouling. Biocatalytic membranes (BCMs), in which enzymes are immobilized on membranes, combines the advantages of membrane separation and enzymatic degradation. This review article discussed various commonly used enzymes in BCMs for removing MEC and fouling. The majorly used enzymes were oxidoreductases and hydrolases for removing MEC, antifouling, and self-cleaning ability. The various BCM synthesis processes based on entrapment, crosslinking, and binding have been summarized, along with the effects of the addition of the nanoparticles on the performances of the BCMs. The scale-up, commercial viability, challenges, and future direction for improving BCMs have been discussed and shown bright possibilities for these new generation membranes.
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Affiliation(s)
- Najmul Haque Barbhuiya
- Environmental Science and Engineering Department (ESED), Indian Institute of Technology Bombay, Mumbai, 400076, India
| | - Utkarsh Misra
- Environmental Science and Engineering Department (ESED), Indian Institute of Technology Bombay, Mumbai, 400076, India; Centre for Research in Nanotechnology & Science (CRNTS), Indian Institute of Technology Bombay, Mumbai, 400076, India
| | - Swatantra P Singh
- Environmental Science and Engineering Department (ESED), Indian Institute of Technology Bombay, Mumbai, 400076, India; Centre for Research in Nanotechnology & Science (CRNTS), Indian Institute of Technology Bombay, Mumbai, 400076, India; Interdisciplinary Program in Climate Studies (IDPCS), Indian Institute of Technology Bombay, Mumbai, 400076, India.
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