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Abbasi SA, Rahi R, Abbasi T, Patnaik P, Abbasi T. A pilot-scale assessment of five common weeds in the sustainable treatment of sewage utilizing SHEFROL ®, with prospects of a closed-loop biorefinery. Int J Phytoremediation 2024:1-15. [PMID: 38644582 DOI: 10.1080/15226514.2024.2340126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/23/2024]
Abstract
Relative efficacy of five common weeds-of the kind that are either rooted in soil or which freely float over water-was assessed in rapid, effective and sustainable treatment of sewage at pilot plant scale in the recently developed and patented SHEFROL® bioreactors. The plants were utilized in a unit of capacity 12,000 liters/day (LPD) which, after two years of use, was enlarged to handle 40,000 LPD of sewage. It was then further expanded after an year to treat 57,000 LPD. All the five weeds, of which none has previously been tested in a pilot-scale SHEFROL, were able to foster highly efficient primary treatment (in terms of suspended and total solids) and secondary treatment (in terms of BOD and COD) to levels exceeding 85% in most cases. Additionally, the weeds also helped in achieving significant tertiary treatment. At different hydraulic retention times, and at steady state, the five weeds achieved treatment of BOD, COD, suspended solids, nitrogen, phosphorous, copper, nickel, zinc, and manganese in the ranges, 80-95, 79-91, 82-95, 61-71, 51-73, 37-43, 30-38, 39-47, and 27-35%, respectively. It all occurred in a single process step and without the use of any machine or chemical. This made the system not only simple and inexpensive to install but also to maintain. Over continuous long-term operation for four years, the system was seen to be very robust as it was able to handle wide variations in the volumes and characteristics of sewage, as well as absorb shock loads without compromising the reactor performance. The sustainability of the system can be further enhanced by upgrading it to a circular biorefinery. Energy sources in the form of volatile fatty acids (VFAs) can be extracted from the weeds removed from SHEFROL and then the weeds can be converted into organic fertilizer using high-rate vermireactors recently developed by the authors.
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Affiliation(s)
- S A Abbasi
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Kalapet, Puducherry, India
| | - R Rahi
- Emergy Enviro Private Limited, Society for Innovation & Entrepreneurship, Indian Institute of Technology Bombay, Powai, Mumbai, India
| | - Tabassum- Abbasi
- School of Advanced Engineering, University of Petroleum and Energy Studies, Dehradun, India
| | | | - Tasneem Abbasi
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Kalapet, Puducherry, India
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Wirchnianski AS, Nyakatura EK, Herbert AS, Kuehne AI, Abbasi SA, Florez C, Storm N, McKay LGA, Dailey L, Kuang E, Abelson DM, Wec AZ, Chakraborti S, Holtsberg FW, Shulenin S, Bornholdt ZA, Aman MJ, Honko AN, Griffiths A, Dye JM, Chandran K, Lai JR. Design and characterization of protective pan-ebolavirus and pan-filovirus bispecific antibodies. PLoS Pathog 2024; 20:e1012134. [PMID: 38603762 PMCID: PMC11037526 DOI: 10.1371/journal.ppat.1012134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 04/23/2024] [Accepted: 03/18/2024] [Indexed: 04/13/2024] Open
Abstract
Monoclonal antibodies (mAbs) are an important class of antiviral therapeutics. MAbs are highly selective, well tolerated, and have long in vivo half-life as well as the capacity to induce immune-mediated virus clearance. Their activities can be further enhanced by integration of their variable fragments (Fvs) into bispecific antibodies (bsAbs), affording simultaneous targeting of multiple epitopes to improve potency and breadth and/or to mitigate against viral escape by a single mutation. Here, we explore a bsAb strategy for generation of pan-ebolavirus and pan-filovirus immunotherapeutics. Filoviruses, including Ebola virus (EBOV), Sudan virus (SUDV), and Marburg virus (MARV), cause severe hemorrhagic fever. Although there are two FDA-approved mAb therapies for EBOV infection, these do not extend to other filoviruses. Here, we combine Fvs from broad ebolavirus mAbs to generate novel pan-ebolavirus bsAbs that are potently neutralizing, confer protection in mice, and are resistant to viral escape. Moreover, we combine Fvs from pan-ebolavirus mAbs with those of protective MARV mAbs to generate pan-filovirus protective bsAbs. These results provide guidelines for broad antiviral bsAb design and generate new immunotherapeutic candidates.
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MESH Headings
- Animals
- Mice
- Antibodies, Bispecific/immunology
- Antibodies, Bispecific/pharmacology
- Antibodies, Bispecific/therapeutic use
- Ebolavirus/immunology
- Hemorrhagic Fever, Ebola/immunology
- Hemorrhagic Fever, Ebola/prevention & control
- Hemorrhagic Fever, Ebola/virology
- Antibodies, Viral/immunology
- Humans
- Filoviridae/immunology
- Antibodies, Neutralizing/immunology
- Antibodies, Neutralizing/therapeutic use
- Antibodies, Monoclonal/immunology
- Female
- Mice, Inbred BALB C
- Filoviridae Infections/immunology
- Filoviridae Infections/therapy
- Filoviridae Infections/prevention & control
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Affiliation(s)
- Ariel S. Wirchnianski
- Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, United States of America
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America
| | - Elisabeth K. Nyakatura
- Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, United States of America
| | - Andrew S. Herbert
- Virology Division, United States Army Medical Research Institute of Infectious Diseases, Frederick, Maryland, United States of America
- The Geneva Foundation, Tacoma, Washington, United States of America
| | - Ana I. Kuehne
- Virology Division, United States Army Medical Research Institute of Infectious Diseases, Frederick, Maryland, United States of America
| | - Shawn A. Abbasi
- Virology Division, United States Army Medical Research Institute of Infectious Diseases, Frederick, Maryland, United States of America
- The Geneva Foundation, Tacoma, Washington, United States of America
| | - Catalina Florez
- Virology Division, United States Army Medical Research Institute of Infectious Diseases, Frederick, Maryland, United States of America
- The Geneva Foundation, Tacoma, Washington, United States of America
| | - Nadia Storm
- Department of Virology, Immunology, and Microbiology; and National Emerging Infectious Diseases Laboratories, Boston University School of Medicine, Boston, Massachusetts, United States of America
| | - Lindsay G. A. McKay
- Department of Virology, Immunology, and Microbiology; and National Emerging Infectious Diseases Laboratories, Boston University School of Medicine, Boston, Massachusetts, United States of America
| | - Leandrew Dailey
- Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, United States of America
| | - Erin Kuang
- Mapp Biopharmaceutical Inc., San Diego, California, United States of America
| | - Dafna M. Abelson
- Mapp Biopharmaceutical Inc., San Diego, California, United States of America
| | - Anna Z. Wec
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America
| | - Srinjoy Chakraborti
- Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, United States of America
| | | | - Sergey Shulenin
- Integrated BioTherapeutics, Inc., Rockville, Maryland, United States of America
| | | | - M. Javad Aman
- Integrated BioTherapeutics, Inc., Rockville, Maryland, United States of America
| | - Anna N. Honko
- Department of Virology, Immunology, and Microbiology; and National Emerging Infectious Diseases Laboratories, Boston University School of Medicine, Boston, Massachusetts, United States of America
| | - Anthony Griffiths
- Department of Virology, Immunology, and Microbiology; and National Emerging Infectious Diseases Laboratories, Boston University School of Medicine, Boston, Massachusetts, United States of America
| | - John M. Dye
- Virology Division, United States Army Medical Research Institute of Infectious Diseases, Frederick, Maryland, United States of America
| | - Kartik Chandran
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America
| | - Jonathan R. Lai
- Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, United States of America
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Pari P, Abbasi T, Abbasi SA. AI-based prediction of the improvement in air quality induced by emergency measures. J Environ Manage 2024; 351:119716. [PMID: 38064985 DOI: 10.1016/j.jenvman.2023.119716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 11/16/2023] [Accepted: 11/23/2023] [Indexed: 01/14/2024]
Abstract
Several cities in the developing world, of which the capital city of India, New Delhi, is an example, often experience air quality in which pollutant levels go way above the levels considered hazardous for human health. To bring down the air quality to within permissible limits quickly, the measures typically taken involve shutting down certain high-polluting activities for some time to enable the air quality to recover temporarily. This paper presents a first-ever model based on artificial neural networks to forecast the extent of reduction in air quality parameters that can be achieved and the time period within which a change can be experienced when the source of the emissions is cut off temporarily. The model is based on the extensive data on the extent of reduction in air quality parameters that occurred during the lockdown that was imposed during the COVID-19 pandemic. The non-linear autoregressive exogenous network-based model chosen for the purpose employs the hour since stopping of emissions, relative humidity, wind speed, wind direction, and ambient temperature as input parameters to predict the rate of change of PM2.5 with respect to the concentration at the start of the stopping of the emissions. Air quality data from a key monitoring station in New Delhi was used to develop the model. The model predicted the rate of drop in PM2.5 with an R and MSE of 0.0044 and 0.9736, respectively, while training and 0.0095 and 0.9583 while testing. The model was then tested with data from 19 other stations in New Delhi, and accuracy of the model was found to be exceptionally accurate, with the correlation between the measured and the predicted PM2.5 levels ranging from 0.74 to 0.94 and the MSE ranging from 0.0110 to 1.0746. Thus, the model can be employed to determine the number of hours of temporary stoppage of emissions required for the PM2.5 concentration to reach safe levels. The methodology of development of the model can be extrapolated to construct models tailored for use in other parts of the world as well.
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Affiliation(s)
- Pavithra Pari
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Pondicherry, 605014, India
| | - Tasneem Abbasi
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Pondicherry, 605014, India.
| | - S A Abbasi
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Pondicherry, 605014, India
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Braun SD, Asif M, Hassan L, Ul Haq I, Abbasi SA, Jamil B, Monecke S, Ehricht R, Mueller E, Syed MA. Analysis of carbapenem-resistant strains isolated in a tertiary care hospital in Rawalpindi, Pakistan, during the years 2016 and 2020. J Hosp Infect 2023; 141:187-189. [PMID: 37321411 DOI: 10.1016/j.jhin.2023.06.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Accepted: 06/09/2023] [Indexed: 06/17/2023]
Affiliation(s)
- S D Braun
- Leibniz Institute of Photonic Technology Member of the Leibniz Center for Photonics in Infection Research (LPI), Jena, Germany; InfectoGnostics Research Campus, Jena, Germany.
| | - M Asif
- Department of Microbiology, University of Haripur, Haripur, Pakistan
| | - L Hassan
- Department of Microbiology, University of Haripur, Haripur, Pakistan
| | - I Ul Haq
- Department of Microbiology, University of Haripur, Haripur, Pakistan
| | - S A Abbasi
- Fauji Foundation Hospital, Rawalpindi, Pakistan
| | - B Jamil
- BJ Micro Lab, Rawalpindi, Pakistan
| | - S Monecke
- Leibniz Institute of Photonic Technology Member of the Leibniz Center for Photonics in Infection Research (LPI), Jena, Germany; InfectoGnostics Research Campus, Jena, Germany; Institute for Medical Microbiology and Virology, Dresden University Hospital, Dresden, Germany
| | - R Ehricht
- Leibniz Institute of Photonic Technology Member of the Leibniz Center for Photonics in Infection Research (LPI), Jena, Germany; InfectoGnostics Research Campus, Jena, Germany; Institute of Physical Chemistry, Friedrich-Schiller University, Jena, Germany
| | - E Mueller
- Leibniz Institute of Photonic Technology Member of the Leibniz Center for Photonics in Infection Research (LPI), Jena, Germany; InfectoGnostics Research Campus, Jena, Germany
| | - M A Syed
- Department of Microbiology, University of Haripur, Haripur, Pakistan.
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Abstract
The paper describes the setting up and long-term continuous operation of the first real-life, pilot scale, sewage treatment plant based on the recently patented phytoremediation technology, trademarked as SHEFROL®. The unit was about three times cheaper to install, operate and maintain than the least expensive of the other wetland-based technologies presently in vogue. Its semi-permanent version is 30 times cheaper. Monitoring of flow rates and levels of treatment intermittently over a 3 year course of continuous operation indicated the constancy and robustness of the reactor in treating total solids, suspended solids, chemical oxygen demand, biological oxygen demand, total Kjeldahl nitrogen, and soluble phosphorous to the average extents of 94, 84, 79, 70, 62 and 28% respectively. Earlier experience with bench-scale SHEFROL® units has indicated that removal of metals like Cu, Ni, Co, Zn, and Mn also takes place to the extent of 25-45% in these systems. These primary, secondary, and tertiary treatments occurred in a single unit process with no necessity of any pumping, aeration, or recycling. Models based on artificial intelligence were developed which enable forecasting the reactor performance in terms of secondary and tertiary treatment, respectively.
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Affiliation(s)
- M A Bhat
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Puducherry, India
| | - Tasneem Abbasi
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Puducherry, India
| | - S A Abbasi
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Puducherry, India
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Frumkin LR, Lucas M, Scribner CL, Ortega-Heinly N, Rogers J, Yin G, Hallam TJ, Yam A, Bedard K, Begley R, Cohen CA, Badger CV, Abbasi SA, Dye JM, McMillan B, Wallach M, Bricker TL, Joshi A, Boon ACM, Pokhrel S, Kraemer BR, Lee L, Kargotich S, Agochiya M, John TS, Mochly-Rosen D. Egg-Derived Anti-SARS-CoV-2 Immunoglobulin Y (IgY) With Broad Variant Activity as Intranasal Prophylaxis Against COVID-19. Front Immunol 2022; 13:899617. [PMID: 35720389 PMCID: PMC9199392 DOI: 10.3389/fimmu.2022.899617] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 05/03/2022] [Indexed: 01/17/2023] Open
Abstract
COVID-19 emergency use authorizations and approvals for vaccines were achieved in record time. However, there remains a need to develop additional safe, effective, easy-to-produce, and inexpensive prevention to reduce the risk of acquiring SARS-CoV-2 infection. This need is due to difficulties in vaccine manufacturing and distribution, vaccine hesitancy, and, critically, the increased prevalence of SARS-CoV-2 variants with greater contagiousness or reduced sensitivity to immunity. Antibodies from eggs of hens (immunoglobulin Y; IgY) that were administered the receptor-binding domain (RBD) of the SARS-CoV-2 spike protein were developed for use as nasal drops to capture the virus on the nasal mucosa. Although initially raised against the 2019 novel coronavirus index strain (2019-nCoV), these anti-SARS-CoV-2 RBD IgY surprisingly had indistinguishable enzyme-linked immunosorbent assay binding against variants of concern that have emerged, including Alpha (B.1.1.7), Beta (B.1.351), Delta (B.1.617.2), and Omicron (B.1.1.529). This is different from sera of immunized or convalescent patients. Culture neutralization titers against available Alpha, Beta, and Delta were also indistinguishable from the index SARS-CoV-2 strain. Efforts to develop these IgY for clinical use demonstrated that the intranasal anti-SARS-CoV-2 RBD IgY preparation showed no binding (cross-reactivity) to a variety of human tissues and had an excellent safety profile in rats following 28-day intranasal delivery of the formulated IgY. A double-blind, randomized, placebo-controlled phase 1 study evaluating single-ascending and multiple doses of anti-SARS-CoV-2 RBD IgY administered intranasally for 14 days in 48 healthy adults also demonstrated an excellent safety and tolerability profile, and no evidence of systemic absorption. As these antiviral IgY have broad selectivity against many variants of concern, are fast to produce, and are a low-cost product, their use as prophylaxis to reduce SARS-CoV-2 viral transmission warrants further evaluation. Clinical Trial Registration https://www.clinicaltrials.gov/ct2/show/NCT04567810, identifier NCT04567810.
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Affiliation(s)
- Lyn R. Frumkin
- School of Medicine, SPARK at Stanford, Stanford University, Stanford, CA, United States
| | - Michaela Lucas
- Faculty of Health and Medical Sciences Internal Medicine, The University of Western Australia, Perth, WA, Australia
| | | | | | - Jayden Rogers
- Linear Clinical Research Ltd, Nedlands, WA, Australia
| | - Gang Yin
- Sutro Biopharma Inc., South San Francisco, CA, United States
| | | | - Alice Yam
- Sutro Biopharma Inc., South San Francisco, CA, United States
| | - Kristin Bedard
- Sutro Biopharma Inc., South San Francisco, CA, United States
| | - Rebecca Begley
- School of Medicine, SPARK at Stanford, Stanford University, Stanford, CA, United States
| | - Courtney A. Cohen
- Virology Division, United States Army Medical Research Institute of Infectious Diseases, Frederick, MD, United States
- The Geneva Foundation, Tacoma, WA, United States
| | - Catherine V. Badger
- Virology Division, United States Army Medical Research Institute of Infectious Diseases, Frederick, MD, United States
| | - Shawn A. Abbasi
- Virology Division, United States Army Medical Research Institute of Infectious Diseases, Frederick, MD, United States
| | - John M. Dye
- Virology Division, United States Army Medical Research Institute of Infectious Diseases, Frederick, MD, United States
| | | | - Michael Wallach
- University of Technology Sydney, Sydney, NSW, Australia
- SPARK Sydney, Sydney, NSW, Australia
| | - Traci L. Bricker
- Department of Medicine, Washington University School of Medicine, St. Louis, MO, United States
| | - Astha Joshi
- Department of Medicine, Washington University School of Medicine, St. Louis, MO, United States
| | - Adrianus C. M. Boon
- Department of Medicine, Washington University School of Medicine, St. Louis, MO, United States
| | - Suman Pokhrel
- Department of Chemical and Systems Biology, Stanford University, School of Medicine, Stanford, CA, United States
| | - Benjamin R. Kraemer
- Department of Chemical and Systems Biology, Stanford University, School of Medicine, Stanford, CA, United States
| | - Lucia Lee
- Department of Chemical and Systems Biology, Stanford University, School of Medicine, Stanford, CA, United States
| | - Stephen Kargotich
- School of Medicine, SPARK Global, Stanford University, Stanford, CA, United States
| | - Mahima Agochiya
- School of Medicine, SPARK at Stanford, Stanford University, Stanford, CA, United States
| | - Tom St. John
- School of Medicine, SPARK at Stanford, Stanford University, Stanford, CA, United States
| | - Daria Mochly-Rosen
- School of Medicine, SPARK at Stanford, Stanford University, Stanford, CA, United States
- Department of Chemical and Systems Biology, Stanford University, School of Medicine, Stanford, CA, United States
- School of Medicine, SPARK Global, Stanford University, Stanford, CA, United States
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7
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Voss WN, Hou YJ, Johnson NV, Delidakis G, Kim JE, Javanmardi K, Horton AP, Bartzoka F, Paresi CJ, Tanno Y, Chou CW, Abbasi SA, Pickens W, George K, Boutz DR, Towers DM, McDaniel JR, Billick D, Goike J, Rowe L, Batra D, Pohl J, Lee J, Gangappa S, Sambhara S, Gadush M, Wang N, Person MD, Iverson BL, Gollihar JD, Dye JM, Herbert AS, Finkelstein IJ, Baric RS, McLellan JS, Georgiou G, Lavinder JJ, Ippolito GC. Prevalent, protective, and convergent IgG recognition of SARS-CoV-2 non-RBD spike epitopes. Science 2021; 372:1108-1112. [PMID: 33947773 PMCID: PMC8224265 DOI: 10.1126/science.abg5268] [Citation(s) in RCA: 165] [Impact Index Per Article: 55.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Accepted: 04/29/2021] [Indexed: 12/12/2022]
Abstract
The molecular composition and binding epitopes of the immunoglobulin G (IgG) antibodies that circulate in blood plasma after severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection are unknown. Proteomic deconvolution of the IgG repertoire to the spike glycoprotein in convalescent subjects revealed that the response is directed predominantly (>80%) against epitopes residing outside the receptor binding domain (RBD). In one subject, just four IgG lineages accounted for 93.5% of the response, including an amino (N)-terminal domain (NTD)-directed antibody that was protective against lethal viral challenge. Genetic, structural, and functional characterization of a multidonor class of "public" antibodies revealed an NTD epitope that is recurrently mutated among emerging SARS-CoV-2 variants of concern. These data show that "public" NTD-directed and other non-RBD plasma antibodies are prevalent and have implications for SARS-CoV-2 protection and antibody escape.
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MESH Headings
- Animals
- Antibodies, Monoclonal/blood
- Antibodies, Monoclonal/chemistry
- Antibodies, Monoclonal/immunology
- Antibodies, Neutralizing/blood
- Antibodies, Neutralizing/chemistry
- Antibodies, Neutralizing/immunology
- Antibodies, Viral/blood
- Antibodies, Viral/chemistry
- Antibodies, Viral/immunology
- Antibody Affinity
- COVID-19/immunology
- COVID-19/prevention & control
- Epitopes/immunology
- Humans
- Immune Evasion
- Immunoglobulin G/blood
- Immunoglobulin G/chemistry
- Immunoglobulin G/immunology
- Immunoglobulin Heavy Chains/immunology
- Immunoglobulin Variable Region/immunology
- Mice
- Mice, Inbred BALB C
- Mutation
- Protein Domains
- Proteomics
- SARS-CoV-2/genetics
- SARS-CoV-2/immunology
- Spike Glycoprotein, Coronavirus/chemistry
- Spike Glycoprotein, Coronavirus/genetics
- Spike Glycoprotein, Coronavirus/immunology
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Affiliation(s)
- William N Voss
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - Yixuan J Hou
- Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Nicole V Johnson
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - George Delidakis
- Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA
| | - Jin Eyun Kim
- Department of Biomedical Engineering, The University of Texas at Austin, Austin, TX, USA
| | - Kamyab Javanmardi
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - Andrew P Horton
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - Foteini Bartzoka
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - Chelsea J Paresi
- Department of Chemistry, The University of Texas at Austin, Austin, TX, USA
| | - Yuri Tanno
- Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA
| | - Chia-Wei Chou
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - Shawn A Abbasi
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD, USA
| | - Whitney Pickens
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - Katia George
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - Daniel R Boutz
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
- CCDC Army Research Laboratory-South, The University of Texas at Austin, Austin, TX, USA
| | - Dalton M Towers
- Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA
| | | | - Daniel Billick
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - Jule Goike
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - Lori Rowe
- Biotechnology Core Facility Branch, Division of Scientific Resources, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
- Tulane National Primate Research Center Department of Microbiology 18703 Three Rivers Road Covington, LA, USA
| | - Dhwani Batra
- Biotechnology Core Facility Branch, Division of Scientific Resources, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Jan Pohl
- Biotechnology Core Facility Branch, Division of Scientific Resources, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Justin Lee
- Biotechnology Core Facility Branch, Division of Scientific Resources, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Shivaprakash Gangappa
- Immunology and Pathogenesis Branch, Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Suryaprakash Sambhara
- Immunology and Pathogenesis Branch, Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Michelle Gadush
- Center for Biomedical Research Support, The University of Texas at Austin, Austin, TX, USA
| | - Nianshuang Wang
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - Maria D Person
- Center for Biomedical Research Support, The University of Texas at Austin, Austin, TX, USA
| | - Brent L Iverson
- Department of Chemistry, The University of Texas at Austin, Austin, TX, USA
| | - Jimmy D Gollihar
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
- CCDC Army Research Laboratory-South, The University of Texas at Austin, Austin, TX, USA
- Department of Pathology and Genomic Medicine, Houston Methodist Research Institute, Houston Methodist Hospital, Houston, TX, USA
| | - John M Dye
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD, USA
| | - Andrew S Herbert
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD, USA
| | - Ilya J Finkelstein
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - Ralph S Baric
- Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
- Department of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Jason S McLellan
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
| | - George Georgiou
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA
- Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA
- Department of Biomedical Engineering, The University of Texas at Austin, Austin, TX, USA
- Department of Oncology, Dell Medical School, The University of Texas at Austin, Austin, TX, USA
| | - Jason J Lavinder
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA.
- Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA
| | - Gregory C Ippolito
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA.
- Department of Pathology and Genomic Medicine, Houston Methodist Research Institute, Houston Methodist Hospital, Houston, TX, USA
- Department of Oncology, Dell Medical School, The University of Texas at Austin, Austin, TX, USA
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Voss WN, Hou YJ, Johnson NV, Kim JE, Delidakis G, Horton AP, Bartzoka F, Paresi CJ, Tanno Y, Abbasi SA, Pickens W, George K, Boutz DR, Towers DM, McDaniel JR, Billick D, Goike J, Rowe L, Batra D, Pohl J, Lee J, Gangappa S, Sambhara S, Gadush M, Wang N, Person MD, Iverson BL, Gollihar JD, Dye J, Herbert A, Baric RS, McLellan JS, Georgiou G, Lavinder JJ, Ippolito GC. Prevalent, protective, and convergent IgG recognition of SARS-CoV-2 non-RBD spike epitopes in COVID-19 convalescent plasma. bioRxiv 2020. [PMID: 33398269 DOI: 10.1101/2020.12.20.423708] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Although humoral immunity is essential for control of SARS-CoV-2, the molecular composition, binding epitopes and effector functions of the immunoglobulin G (IgG) antibodies that circulate in blood plasma following infection are unknown. Proteomic deconvolution of the circulating IgG repertoire (Ig-Seq 1 ) to the spike ectodomain (S-ECD 2 ) in four convalescent study subjects revealed that the plasma response is oligoclonal and directed predominantly (>80%) to S-ECD epitopes that lie outside the receptor binding domain (RBD). When comparing antibodies directed to either the RBD, the N-terminal domain (NTD) or the S2 subunit (S2) in one subject, just four IgG lineages (1 anti-S2, 2 anti-NTD and 1 anti-RBD) accounted for 93.5% of the repertoire. Although the anti-RBD and one of the anti-NTD antibodies were equally potently neutralizing in vitro , we nonetheless found that the anti-NTD antibody was sufficient for protection to lethal viral challenge, either alone or in combination as a cocktail where it dominated the effect of the other plasma antibodies. We identified in vivo protective plasma anti-NTD antibodies in 3/4 subjects analyzed and discovered a shared class of antibodies targeting the NTD that utilize unmutated or near-germline IGHV1-24, the most electronegative IGHV gene in the human genome. Structural analysis revealed that binding to NTD is dominated by interactions with the heavy chain, accounting for 89% of the entire interfacial area, with germline residues uniquely encoded by IGHV1-24 contributing 20% (149 Å 2 ). Together with recent reports of germline IGHV1-24 antibodies isolated by B-cell cloning 3,4 our data reveal a class of shared IgG antibodies that are readily observed in convalescent plasma and underscore the role of NTD-directed antibodies in protection against SARS-CoV-2 infection.
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Patnaik P, Abbasi T, Abbasi SA. Vermicompost of the widespread and toxic xerophyte prosopis (Prosopis juliflora) is a benign organic fertilizer. J Hazard Mater 2020; 399:122864. [PMID: 32526435 DOI: 10.1016/j.jhazmat.2020.122864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Revised: 04/26/2020] [Accepted: 04/27/2020] [Indexed: 06/11/2023]
Abstract
Prior to the work described in this paper, no report has existed on the use of any xerophyte is generating vermicompost. Now these authors have been able to develop a process with which the highly invasive xerophyte prosopis (Prosopis juliflora) can be vermicomposted. But does prosopis vermicompost (PVC) have any fertilizer value, given that prosopis has strong allelopathy and toxicity? To seek an answer, the authors have assessed the effect of the PVC on the germination and early growth of five common food plants: brinjal (Solanum melongena), chilly (Capsicum annuum), cucumber (Cucumissativus), ladies finger (Abelmoschus esculentus), and tomato (Lycopersicon esculentum). Thereafter the tomato and the brinjal plants were grown to fruition to assess their yield and nutrient value. Whereas no germination of any seed occurred when the soil was fortified with prosopis leaves, there was 20-100% germination of seeds in different plant species when fertilized with equivalent quantities of PVC. The carbohydrate, potassium, and magnesium contents of prosopis fertilized brinjal and tomato fruits were significantly (p ≤ 0.5) higher than the levels of these nutrients present in the market produce. The prosopis vermicompost displayed pest-repellant attributes as well. The findings indicate that the millions of tonnes of prosopis leaves, which have no utility value and of which falling on earth is harmful to the soil, can be used to generate organic fertilizer.
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Affiliation(s)
- Pratiksha Patnaik
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Puducherry, 605014, India
| | - Tasneem Abbasi
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Puducherry, 605014, India
| | - S A Abbasi
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Puducherry, 605014, India.
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Chan KK, Dorosky D, Sharma P, Abbasi SA, Dye JM, Kranz DM, Herbert AS, Procko E. Engineering human ACE2 to optimize binding to the spike protein of SARS coronavirus 2. Science 2020; 369:1261-1265. [PMID: 32753553 PMCID: PMC7574912 DOI: 10.1126/science.abc0870] [Citation(s) in RCA: 427] [Impact Index Per Article: 106.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2020] [Revised: 05/05/2020] [Accepted: 07/28/2020] [Indexed: 11/26/2022]
Abstract
For severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) to enter human cells, the spike protein on the surface of the virus must bind to the host receptor protein, angiotensin-converting enzyme 2 (ACE2). A soluble version of the receptor is being explored as a therapeutic. Chan et al. used deep mutagenesis to identify ACE2 mutants that bind more tightly to the spike protein and combined mutations to further increase binding affinity (see the Perspective by DeKosky). A promising variant was engineered to be a stable dimer that has a binding affinity for the spike protein; it is comparable with neutralizing antibodies and neutralized both SARS-CoV-2 and SARS-CoV-1 in a cell-based assay. In addition, the similarity to the natural receptor may limit the possibility for viral escape. Science, this issue p. 1261; see also p. 1167 The spike (S) protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) binds angiotensin-converting enzyme 2 (ACE2) on host cells to initiate entry, and soluble ACE2 is a therapeutic candidate that neutralizes infection by acting as a decoy. By using deep mutagenesis, mutations in ACE2 that increase S binding are found across the interaction surface, in the asparagine 90–glycosylation motif and at buried sites. The mutational landscape provides a blueprint for understanding the specificity of the interaction between ACE2 and S and for engineering high-affinity decoy receptors. Combining mutations gives ACE2 variants with affinities that rival those of monoclonal antibodies. A stable dimeric variant shows potent SARS-CoV-2 and -1 neutralization in vitro. The engineered receptor is catalytically active, and its close similarity with the native receptor may limit the potential for viral escape.
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Affiliation(s)
- Kui K Chan
- Orthogonal Biologics, Champaign, IL 61821, USA
| | - Danielle Dorosky
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA
| | - Preeti Sharma
- Department of Biochemistry and Cancer Center at Illinois, University of Illinois, Urbana, IL 61801, USA
| | - Shawn A Abbasi
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA
| | - John M Dye
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA
| | - David M Kranz
- Department of Biochemistry and Cancer Center at Illinois, University of Illinois, Urbana, IL 61801, USA
| | - Andrew S Herbert
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA.,The Geneva Foundation, Tacoma, WA 98402, USA
| | - Erik Procko
- Department of Biochemistry and Cancer Center at Illinois, University of Illinois, Urbana, IL 61801, USA.
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Dieterle ME, Haslwanter D, Bortz RH, Wirchnianski AS, Lasso G, Vergnolle O, Abbasi SA, Fels JM, Laudermilch E, Florez C, Mengotto A, Kimmel D, Malonis RJ, Georgiev G, Quiroz J, Barnhill J, Pirofski LA, Daily JP, Dye JM, Lai JR, Herbert AS, Chandran K, Jangra RK. A Replication-Competent Vesicular Stomatitis Virus for Studies of SARS-CoV-2 Spike-Mediated Cell Entry and Its Inhibition. Cell Host Microbe 2020; 28:486-496.e6. [PMID: 32738193 PMCID: PMC7332447 DOI: 10.1016/j.chom.2020.06.020] [Citation(s) in RCA: 129] [Impact Index Per Article: 32.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 06/16/2020] [Accepted: 06/23/2020] [Indexed: 12/11/2022]
Abstract
There is an urgent need for vaccines and therapeutics to prevent and treat COVID-19. Rapid SARS-CoV-2 countermeasure development is contingent on the availability of robust, scalable, and readily deployable surrogate viral assays to screen antiviral humoral responses, define correlates of immune protection, and down-select candidate antivirals. Here, we generate a highly infectious recombinant vesicular stomatitis virus (VSV) bearing the SARS-CoV-2 spike glycoprotein S as its sole entry glycoprotein and show that this recombinant virus, rVSV-SARS-CoV-2 S, closely resembles SARS-CoV-2 in its entry-related properties. The neutralizing activities of a large panel of COVID-19 convalescent sera can be assessed in a high-throughput fluorescent reporter assay with rVSV-SARS-CoV-2 S, and neutralization of rVSV-SARS-CoV-2 S and authentic SARS-CoV-2 by spike-specific antibodies in these antisera is highly correlated. Our findings underscore the utility of rVSV-SARS-CoV-2 S for the development of spike-specific therapeutics and for mechanistic studies of viral entry and its inhibition. Highly infectious recombinant VSV expressing SARS-CoV-2 spike (S) was generated rVSV-SARS-CoV-2 S resembles SARS-CoV-2 in entry and inhibitor or antibody sensitivity rVSV-SARS-CoV-2 S affords rapid screens and forward-genetic analyses of antivirals
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Affiliation(s)
- M Eugenia Dieterle
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Denise Haslwanter
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Robert H Bortz
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Ariel S Wirchnianski
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Gorka Lasso
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Olivia Vergnolle
- Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Shawn A Abbasi
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA
| | - J Maximilian Fels
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Ethan Laudermilch
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Catalina Florez
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Chemistry and Life Science, United States Military Academy at West Point, West Point, NY 10996, USA
| | - Amanda Mengotto
- Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, Bronx, NY 10461, USA
| | - Duncan Kimmel
- Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, Bronx, NY 10461, USA
| | - Ryan J Malonis
- Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - George Georgiev
- Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Jose Quiroz
- Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, Bronx, NY 10461, USA
| | - Jason Barnhill
- Department of Chemistry and Life Science, United States Military Academy at West Point, West Point, NY 10996, USA
| | - Liise-Anne Pirofski
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, Bronx, NY 10461, USA
| | - Johanna P Daily
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, Bronx, NY 10461, USA
| | - John M Dye
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA
| | - Jonathan R Lai
- Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Andrew S Herbert
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA; The Geneva Foundation, 917 Pacific Avenue, Tacoma, WA 98402, USA.
| | - Kartik Chandran
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
| | - Rohit K Jangra
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
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Iqbal J, Asghar H, Shah SKH, Naeem M, Abbasi SA, Ali R. Elemental analysis of sage (herb) using calibration-free laser-induced breakdown spectroscopy. Appl Opt 2020; 59:4927-4932. [PMID: 32543489 DOI: 10.1364/ao.385932] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Accepted: 05/04/2020] [Indexed: 06/11/2023]
Abstract
In this work, laser-induced breakdown spectroscopy (LIBS) has been used for the quantitative and qualitative analysis of the sage sample using the calibration-free LIBS (CF-LIBS) technique. The sage plasma is generated by focusing the second harmonics (532 nm) of a Q-switched Nd:YAG laser with a repetition rate of 10 Hz and pulse duration of 5 ns. The emission spectra are recorded using a LIBS 2000 detection system spectrometer consisting of five high-resolution spectrometers covering a wavelength range from 200 to 720 nm. The optical emission spectra of the sage sample reveal the spectral lines of Fe, Ca, Ti, Co, Mn, Ni, and Cr. The plasma temperature and electron number density of the neutral spectral lines of the pertinent elements have been deduced using the Boltzmann plot and Stark-broadening line profile method, with average values 8855±885K and 3.89×1016cm-3, respectively. The average values of the plasma parameters were used for the quantification of the detected elements in the sample. Based on the calibration-free method, the measured results demonstrate that Fe is the major constituent in the sample, having a percentage concentration of 48.1%, while the remaining elements are Ca, Ti, Co, Mn, Ni, and Cr, with percentage concentrations 0.7%, 5.3%, 8%, 11%, 12.3%, and 14.6%, respectively. This study demonstrates the feasibility of LIBS for the compositional analysis of major and trace elements present in the plant samples and its further applications in medicine.
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13
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Dieterle ME, Haslwanter D, Bortz RH, Wirchnianski AS, Lasso G, Vergnolle O, Abbasi SA, Fels JM, Laudermilch E, Florez C, Mengotto A, Kimmel D, Malonis RJ, Georgiev G, Quiroz J, Barnhill J, Pirofski LA, Daily JP, Dye JM, Lai JR, Herbert AS, Chandran K, Jangra RK. A replication-competent vesicular stomatitis virus for studies of SARS-CoV-2 spike-mediated cell entry and its inhibition. bioRxiv 2020:2020.05.20.105247. [PMID: 32511365 PMCID: PMC7263493 DOI: 10.1101/2020.05.20.105247] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
There is an urgent need for vaccines and therapeutics to prevent and treat COVID-19. Rapid SARS-CoV-2 countermeasure development is contingent on the availability of robust, scalable, and readily deployable surrogate viral assays to screen antiviral humoral responses, and define correlates of immune protection, and to down-select candidate antivirals. Here, we describe a highly infectious recombinant vesicular stomatitis virus bearing the SARS-CoV-2 spike glycoprotein S as its sole entry glycoprotein that closely resembles the authentic agent in its entry-related properties. We show that the neutralizing activities of a large panel of COVID-19 convalescent sera can be assessed in high-throughput fluorescent reporter assay with rVSV-SARS-CoV-2 S and that neutralization of the rVSV and authentic SARS-CoV-2 by spike-specific antibodies in these antisera is highly correlated. Our findings underscore the utility of rVSV-SARS-CoV-2 S for the development of spike-specific vaccines and therapeutics and for mechanistic studies of viral entry and its inhibition.
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Affiliation(s)
- M. Eugenia Dieterle
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - Denise Haslwanter
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - Robert H. Bortz
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - Ariel S. Wirchnianski
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
- Department of Biochemistry, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - Gorka Lasso
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - Olivia Vergnolle
- Department of Biochemistry, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - Shawn A. Abbasi
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA
| | - J. Maximilian Fels
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - Ethan Laudermilch
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - Catalina Florez
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
- Department of Chemistry and Life Science, United States Military Academy at West Point, West Point, NY 10996, USA
| | - Amanda Mengotto
- Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, New York, NY 10461, USA
| | - Duncan Kimmel
- Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, New York, NY 10461, USA
| | - Ryan J. Malonis
- Department of Biochemistry, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - George Georgiev
- Department of Biochemistry, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - Jose Quiroz
- Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, New York, NY 10461, USA
| | - Jason Barnhill
- Department of Chemistry and Life Science, United States Military Academy at West Point, West Point, NY 10996, USA
| | - Liise-anne Pirofski
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
- Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, New York, NY 10461, USA
| | - Johanna P. Daily
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
- Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, New York, NY 10461, USA
| | - John M. Dye
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA
| | - Jonathan R. Lai
- Department of Biochemistry, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - Andrew S. Herbert
- U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA
- The Geneva Foundation, 917 Pacific Avenue, Tacoma, WA 98402, USA
| | - Kartik Chandran
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - Rohit K. Jangra
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
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Abbasi SA, Ponni G, Tauseef SM. Potential of joyweed Alternanthera sessilis for rapid treatment of domestic sewage in SHEFROL ® bioreactor. Int J Phytoremediation 2019; 21:160-169. [PMID: 30701990 DOI: 10.1080/15226514.2018.1488814] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
In a first-ever report on this subject, it is shown that a common amphibious plant joyweed (Alternanthera sessilis) can be used in rapid and efficient treatment of biodegradable wastewaters, typified by domestic sewage. The plant was effective when used indoors under artificial lighting, as well as outdoors. It enabled treatment of sewage, varying widely in strength (from 300 mg/L to 1800 mg/L in chemical oxygen demand), to the extent of 78.9-83.9%. It was also able to remove biological oxygen demand, suspended solids, phosphorous, nitrogen, and the heavy metal copper to the extent of 87%, 93%, 45%, and 43%, respectively. Over 99% of total coliforms, faecal coliforms, and faecal streptococci were also removed. The treatment was very swiftly achieved, at a hydraulic retention time of just 6 h, in the "sheet flow root level" (SHEFROL®) bioreactor developed earlier by us and of which a patent claim has been registered. The findings indicate that A. sessilis has the potential to affect primary, secondary, and tertiary treatment of domestic sewage along with significant pathogen removal in a single process step when used in SHEFROL® bioreactors.
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Affiliation(s)
- S A Abbasi
- a Centre for Pollution Control & Environmental Engineering , Pondicherry University , Puducherry , India
| | - G Ponni
- a Centre for Pollution Control & Environmental Engineering , Pondicherry University , Puducherry , India
| | - S M Tauseef
- b Department of Health, Safety, Environment and Civil Engineering , University of Petroleum and Energy Studies , Dehradun , India
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Abbasi SA, Tauseef SM. Use of the terrestrial weed Alternanthera ficoidea in treating greywater in soil-less SHEFROL ® bioreactors. Water Sci Technol 2018; 77:2005-2013. [PMID: 29722686 DOI: 10.2166/wst.2018.093] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The ornamental plant Alternanthera ficoidea (also named A. tenella), which is common and widespread throughout the tropics and is being increasingly regarded as an invasive, problematic weed, has been explored as a bioagent in greywater treatment. In the recently developed SHEFROL® bioreactor, it was seen to treat greywater of varying strengths (250-1,300 mg/L chemical oxygen demand, COD) quickly and substantially to the extent of 75-77%. Biological oxygen demand (BOD), nitrogen, phosphorus, suspended solids, and heavy metals copper, nickel, manganese, and zinc were also removed to the extents of 83.5, 94.9, 33.1, 27.0, 44.8, 27.5, 38.2, and 43.2%, respectively. As all this was achieved in a single pot, single step, and in a simple reactor operation, at hydraulic retention times of a mere 6 h, it shows the process to be several times more efficient as well as potentially less expensive than the conventional treatment systems which utilize macrophytes in tanks or constructed wetlands.
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Affiliation(s)
- S A Abbasi
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Chinakalapet, Puducherry 605 014, India E-mail:
| | - S M Tauseef
- Environmental Research Institute, University of Petroleum and Energy Studies, Dehradun 248 007, India
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Hussain N, Abbasi T, Abbasi SA. Vermicomposting transforms allelopathic parthenium into a benign organic fertilizer. J Environ Manage 2016; 180:180-189. [PMID: 27233043 DOI: 10.1016/j.jenvman.2016.05.013] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2015] [Revised: 04/02/2016] [Accepted: 05/03/2016] [Indexed: 06/05/2023]
Abstract
Vermicompost, which had been derived solely by the action of the epigeic earthworm Eisenia fetida on parthenium (Parthenium hysterophorus), was tested for its impact on the germination and early growth of green gram (Vigna radiata), ladies finger (Abelmoschus esculentus) and cucumber (Cucumis sativus). Seedlings were germinated and grown in soil amended with 0 (control), 0.75, 1.5, 2, 4, 8, 20 and 40% (by weight) parthenium vermicompost. Even though parthenium is known to possess strong negative allelopathy, as also plant/animal toxicity in other forms, its vermicompost (VC) manifested none of these attributes. Rather the VC enhanced germination success, introduced plant-friendly physical features in the container media, increased biomass carbon, and was seen to promote early growth as reflected in several morphological and biochemical characteristics in plants which had received parthenium VC in comparison to those which had not. All these effects were statistically significant. Fourier Transform Infrared (FTIR) Spectrometry revealed that the phenols and the sesquiterpene lactones that are responsible for the negative allelopathic impact of parthenium were largely destroyed in the course of vermicomposting. FTIR spectra also indicated that lignin content of parthenium was reduced during its vermicomposting. The findings open up the possibility that several other invasives known for their negative allelopathy and toxicity may also produce vermicompost which may be plant-friendly and soil-friendly. It also makes it appear possible that the huge quantities of phytomass that is generated annually by parthenium can be gainfully utilized in producing organic fertilizer via vermicomposting, thereby providing a means of exercising some control over parthenium's rampant growth and invasion.
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Affiliation(s)
- Naseer Hussain
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Chinnakalapet, Puducherry 605 014, India
| | - Tasneem Abbasi
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Chinnakalapet, Puducherry 605 014, India
| | - S A Abbasi
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Chinnakalapet, Puducherry 605 014, India.
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Hussain N, Abbasi T, Abbasi SA. Transformation of toxic and allelopathic lantana into a benign organic fertilizer through vermicomposting. Spectrochim Acta A Mol Biomol Spectrosc 2016; 163:162-169. [PMID: 27049868 DOI: 10.1016/j.saa.2016.03.019] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2015] [Revised: 03/15/2016] [Accepted: 03/18/2016] [Indexed: 06/05/2023]
Abstract
In a first study of its kind, the composition of vermicompost derived solely from the toxic and allelopathic weed lantana has been investigated using UV-visible and Fourier transform infrared (FT-IR) spectroscopy, thermogravimetric (TG) and differential scanning calorimetry (DSC), gas chromatography-mass spectometry (GC-MS), and scanning electron microscopy (SEM). The studies reveal that a sharp reduction in humification index, substantial mineralization of organic matter and degradation of complex aromatics such as lignin and polyphenols into simpler carbohydrates and lipids occur in the course of vermicomposting. GC-MS analysis shows significant fragmentation, bio-oxidation and molecular rearrangements of chemical compounds in vermicompost in comparison to those in lantana. SEM micrographs of vermicompost reflect strong disaggregation of material compared to the much better formed lantana matrices. The phenols and sesquiterpene lactones which are specifically responsible for the toxicity and allelopathy of lantana are seen to get significantly degraded in the course of vermicomposting - turning it into a plant-friendly organic fertilizer. The study leads to the possibility that the millions of tons of phytomass that is generated annually by lantana can be gainfully utilized in producing organic fertilizer via vermicomposting.
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Affiliation(s)
- Naseer Hussain
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Puducherry 605 014, India
| | - Tasneem Abbasi
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Puducherry 605 014, India
| | - S A Abbasi
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Puducherry 605 014, India.
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Shah RV, Murthy VL, Allison MA, Ding J, Budoff M, Frazier-Wood AC, Lima JAC, Steffen L, Siscovick D, Tucker KL, Ouyang P, Abbasi SA, Danielson K, Jerosch-Herold M, Mozaffarian D. Diet and adipose tissue distributions: The Multi-Ethnic Study of Atherosclerosis. Nutr Metab Cardiovasc Dis 2016; 26:185-193. [PMID: 26899879 PMCID: PMC4788543 DOI: 10.1016/j.numecd.2015.12.012] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/26/2015] [Revised: 12/12/2015] [Accepted: 12/21/2015] [Indexed: 02/03/2023]
Abstract
BACKGROUND AND AIMS Dietary quality affects cardiometabolic risk, yet its pathways of influence on regional adipose tissue depots involved in metabolic and diabetes risk are not well established. We aimed to investigate the relationship between dietary quality and regional adiposity. METHODS AND RESULTS We investigated 5079 individuals in the Multi-Ethnic Study of Atherosclerosis (MESA) who had food-frequency questionnaires and measurement of pericardial fat and hepatic attenuation at the baseline study visit in MESA, as well as a subgroup with imaging for visceral and subcutaneous fat (N = 1390). A dietary quality score (DietQuality) was constructed to include established food group constituents of a Mediterranean-type diet. Linear models estimated associations of dietary score as well as its constituents with regional adiposity. Baseline mean age was 61 (± 10) years, and approximately half of the participants (47%) were male. Those with a higher DietQuality score were generally older, female, with a lower body mass index, C-reactive protein, and markers of insulin resistance. After adjustment, a higher DietQuality score was associated with lower visceral fat (lowest vs. highest dietary score quartile: 523.6 vs. 460.5 cm(2)/m; P < 0.01 for trend), pericardial fat (47.5 vs. 41.3 cm(3)/m; P < 0.01 for trend), lesser hepatic steatosis (by hepatic attenuation; 58.6 vs. 60.7 Hounsfield units; P < 0.01 for trend), but not subcutaneous fat (P = 0.39). Greater fruits, vegetables, whole grains, seeds/nuts and yogurt intake were associated with decreased adiposity, while red/processed meats were associated with greater regional adiposity. CONCLUSION A higher quality diet pattern is associated with less regional adiposity, suggesting a potential mechanism of beneficial dietary effects on diabetes, metabolic, and cardiovascular risk.
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Affiliation(s)
- R V Shah
- Department of Medicine, Cardiovascular Division, Beth Israel Deaconess Medical Center, 330 Brookline Ave., Boston, MA 02215, USA.
| | - V L Murthy
- Department of Medicine (Cardiovascular Medicine Division), University of Michigan, Ann Arbor, MI, USA; Department of Radiology (Nuclear Medicine Division), University of Michigan, Ann Arbor, MI, USA.
| | - M A Allison
- Department of Family and Preventive Medicine, University of California, San Diego, La Jolla, CA, USA
| | - J Ding
- Wake Forest University School of Medicine, Winston-Salem, NC, USA
| | - M Budoff
- Department of Cardiology and Medicine, University of California - Los Angeles, Los Angeles, CA, USA
| | - A C Frazier-Wood
- USDA/ARS Children's Nutrition Research Center, Baylor College of Medicine, Houston, TX, USA
| | - J A C Lima
- Department of Medicine, Division of Cardiology, Johns Hopkins University, Baltimore, MD, USA
| | - L Steffen
- University of Minnesota School of Public Health, Minneapolis, MN, USA
| | - D Siscovick
- University of Washington School of Public Health, Seattle, WA, USA
| | - K L Tucker
- University of Massachusetts at Lowell School of Public Health, Lowell, MA, USA
| | - P Ouyang
- Department of Medicine, Division of Cardiology, Johns Hopkins University, Baltimore, MD, USA
| | - S A Abbasi
- Department of Cardiology, Brown University, Providence, RI, USA
| | - K Danielson
- Department of Medicine, Cardiovascular Division, Beth Israel Deaconess Medical Center, 330 Brookline Ave., Boston, MA 02215, USA
| | - M Jerosch-Herold
- Noninvasive Cardiovascular Imaging Section, Cardiovascular Division, Department of Medicine, Brigham and Women's Hospital, Boston, MA, USA; Department of Radiology, Brigham and Women's Hospital, Boston, MA, USA
| | - D Mozaffarian
- Tufts University School of Public Health, Boston, MA, USA.
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19
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Shah RV, Allison MA, Lima JAC, Abbasi SA, Eisman A, Lai C, Jerosch-Herold M, Budoff M, Murthy VL. Abdominal fat radiodensity, quantity and cardiometabolic risk: The Multi-Ethnic Study of Atherosclerosis. Nutr Metab Cardiovasc Dis 2016; 26:114-122. [PMID: 26817938 PMCID: PMC4775418 DOI: 10.1016/j.numecd.2015.12.002] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/13/2015] [Revised: 10/29/2015] [Accepted: 12/03/2015] [Indexed: 12/11/2022]
Abstract
BACKGROUND AND AIMS Fat radiodensity, as measured by fat attenuation on computed tomography (CT), has emerged as a potential biomarker of "fat quality." We sought to characterize the relationship between fat radiodensity and quantity in subcutaneous, visceral, and intermuscular fat depots, and its role in inflammation, insulin resistance, and metabolic syndrome (MetS). METHODS AND RESULTS We studied 1511 individuals from the Multi-Ethnic Study of Atherosclerosis who underwent CT for measurement of regional fat distribution and radiodensity, along with biomarker assessments and adjudication of incident metabolic syndrome (MetS). Linear, logistic and Cox regression analyses were used to measure association between fat radiodensity and (1) fat quantity, (2) biomarkers of cardiometabolic dysfunction, and (3) both prevalent and incident MetS. In each fat depot, radiodensity was strongly and inversely associated with quantity (e.g., visceral fat radiodensity vs. quantity: ρ = -0.82, P < 0.01). After adjustment for age, sex and race, lower visceral fat radiodensity was associated with greater C-reactive protein, leptin and insulin, but lower adiponectin (P < 0.01 for all). After full adjustment for cardiovascular disease risk factors, visceral (but not subcutaneous or intermuscular) fat radiodensity was associated with prevalent MetS (OR = 0.96, 95% CI = 0.93-0.99, P = 0.01). Moreover, lower visceral fat radiodensity was associated with incident MetS after the same adjustment (HR = 0.95, 95% CI 0.93-0.98, P < 0.01). However, this association became non-significant after further adjustment for visceral fat quantity. CONCLUSION Fat radiodensity is strongly correlated with fat quantity and relevant inflammatory biomarkers. Fat radiodensity (especially for visceral fat) may be a complementary, easily assessed marker of cardiometabolic risk.
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Affiliation(s)
- Ravi V Shah
- Department of Medicine, Cardiovascular Division, Beth Israel Deaconess Medical Center, Boston, MA, USA.
| | - M A Allison
- Department of Family and Preventive Medicine, University of California, San Diego, La Jolla, CA, USA
| | - J A C Lima
- Department of Cardiology, Johns Hopkins University, Baltimore, MD, USA
| | - S A Abbasi
- Department of Cardiology, Brown University, Providence, RI, USA
| | - A Eisman
- Department of Medicine, Massachusetts General Hospital, Boston, MA, USA
| | - C Lai
- Department of Medicine, Cardiovascular Division, Beth Israel Deaconess Medical Center, Boston, MA, USA
| | - M Jerosch-Herold
- Noninvasive Cardiovascular Imaging Section, Cardiovascular Division, Department of Medicine and Department of Radiology, Brigham and Women's Hospital, Boston, MA, USA
| | - M Budoff
- Department of Cardiology and Medicine, University of California-Los Angeles, Los Angeles, CA, USA
| | - V L Murthy
- Department of Medicine (Cardiovascular Medicine Division) and Department of Radiology (Nuclear Medicine Division), University of Michigan, Ann Arbor, MI, USA.
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Nassif J, Abbasi SA, Nassar A, Abu-Musa A, Eid AA. The role of NADPH-derived reactive oxygen species production in the pathogenesis of endometriosis: a novel mechanistic approach. J BIOL REG HOMEOS AG 2016; 30:31-40. [PMID: 27049074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Endometriosis is defined as endometriotic tissue growing outside the uterine cavity. It is a common gynecological disorder in women of reproductive age and is associated with chronic pelvic pain and infertility. Despite several studies and theories to explain its cause, the exact pathogenesis of endometriosis remains unclear. Retrograde menstruation is the most plausible theory, however, it is not exclusive. The disparity between the actual prevalence of retrograde menstruation and the prevalence of endometriosis suggests that other factors may determine the susceptibility to endometriosis development. Oxidative stress has been associated with endometriosis. This study aimed to explore the role of NADPH oxidase family in the production of reactive oxygen species (ROS) and to determine whether ROS induce the proliferation of endometriotic implants via mammalian target of rapamycin (mTOR) signaling. Anonymous endometriotic tissue samples were collected from women undergoing laparoscopy for endometriosis. The samples were stained with dihydroethidium and fluorescent images of the slides were taken to detect ROS production. After extraction of RNA from the samples and c-DNA generation, quantitative real-time PCR, protein extraction and Western blot were performed to study gene and protein expression of NADPH oxidase 1 (NOX 1), mTOR and fibronectin. The results showed an increase in ROS levels and NOX 1 gene and protein expression in the endometriotic tissues compared to the normal surrounding tissue control. Also, mTOR and fibronectin, gene expression was found to be increased. Up regulation of NOX at gene and protein level leads to increased production of ROS in the endometriotic tissue, which in turn causes proliferation of the ectopic tissue via alteration of the mTOR signaling pathway. Increased fibronectin gene expression points towards tissue injury in endometriosis as compared to the normal surrounding tissue. This manuscript adds a new insight into the pathogenesis of endometriosis and serves as a background for development of new treatments for the disease-associated pain and infertility.
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Affiliation(s)
- J Nassif
- Department of Obstetrics and Gynecology, Faculty of Medicine and Medical Center, American University of Beirut, Beirut, Lebanon
| | - S A Abbasi
- Department of Obstetrics and Gynecology, Faculty of Medicine and Medical Center, American University of Beirut, Beirut, Lebanon
| | - A Nassar
- Department of Obstetrics and Gynecology, Faculty of Medicine and Medical Center, American University of Beirut, Beirut, Lebanon
| | - A Abu-Musa
- Department of Obstetrics and Gynecology, Faculty of Medicine and Medical Center, American University of Beirut, Beirut, Lebanon
| | - A A Eid
- Department of Anatomy, Cell Biology and Physiology, Faculty of Medicine, American University of Beirut, Beirut, Lebanon
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Hussain N, Abbasi T, Abbasi SA. Vermicomposting eliminates the toxicity of Lantana (Lantana camara) and turns it into a plant friendly organic fertilizer. J Hazard Mater 2015; 298:46-57. [PMID: 26073377 DOI: 10.1016/j.jhazmat.2015.04.073] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2015] [Revised: 04/24/2015] [Accepted: 04/25/2015] [Indexed: 06/04/2023]
Abstract
In evidently the first study of its kind, vermicompost derived solely from a weed known to possess plant and animal toxicity was used to assess its impact on the germination and early growth of several plant species. No pre-composting or supplementation of animal manure was done to generate the vermicompost in order to ensure that the impact is clearly attributable to the weed. Whereas the weed used in this study, Lantana (Lantana camara), is known to possess strong negative allelopathy, besides plant/animal toxicity in other forms, its vermicompost was seen to be a good organic fertilizer as it increased germination success and encouraged growth of all the three botanical species explored by the authors - green gram (Vigna radiata), ladies finger (Abelmoschus esculentus) and cucumber (Cucumis sativus). In terms of several physical, chemical and biochemical attributes that were studied, the vermicompost appeared plant-friendly, giving best results in general when employed at concentrations of 1.5% in soil (w/w). Fourier transform infrared spectrometry revealed that the phenols and the sesquiterpene lactones that are responsible for the allelopathic impact of Lantana were largely destroyed in the course of vermicomposting. There is also an indication that lignin content of Lantana was reduced during its vermicomposting. The findings open up the possibility that the billions of tons of phytomass that is generated annually by Lantana and other invasives can be gainfully utilized in generating organic fertilizer via vermicomposting.
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Affiliation(s)
- N Hussain
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Chinakalapet, Puducherry 605 014, India
| | - Tasneem Abbasi
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Chinakalapet, Puducherry 605 014, India
| | - S A Abbasi
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Chinakalapet, Puducherry 605 014, India.
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Abbasi SA, Hundley WG, Bluemke DA, Jerosch-Herold M, Blankstein R, Petersen SE, Rider OJ, Lima JAC, Allison MA, Murthy VL, Shah RV. Visceral adiposity and left ventricular remodeling: The Multi-Ethnic Study of Atherosclerosis. Nutr Metab Cardiovasc Dis 2015; 25:667-676. [PMID: 26033394 PMCID: PMC4468023 DOI: 10.1016/j.numecd.2015.03.016] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/08/2014] [Revised: 02/18/2015] [Accepted: 03/31/2015] [Indexed: 02/01/2023]
Abstract
BACKGROUND AND AIMS Visceral fat (VF) is a source of pro-inflammatory adipokines implicated in cardiac remodeling. We sought to determine the impact of visceral fat and subcutaneous fat (SQ) depots on left ventricular (LV) structure, function, and geometry in the Multi-Ethnic Study of Atherosclerosis (MESA). METHODS AND RESULTS We performed a post-hoc analysis on 1151 participants from MESA with cardiac magnetic resonance quantification of LV mass and LV mass-to-volume ratio (LVMV, an index of concentricity) and computed tomographic-derived SQ and VF area. Multivariable regression models to estimate association between height-indexed SQ and VF area (per cm(2)/m) with height-indexed LV mass (per height(2.7)) and LVMV were constructed, adjusted for clinical, biochemical, and demographic covariates. We found that both VF and SQ area were associated with height-indexed LV mass (ρ = 0.36 and 0.12, P < 0.0001, respectively), while only VF area was associated with LVMV (ρ = 0.28, P < 0.0001). Individuals with above-median VF had lower LV ejection fraction, greater indexed LV volumes and mass, and higher LVMV (all P < 0.001). In multivariable models adjusted for weight, VF (but not SQ) area was associated with LV concentricity and LV mass index, across both sexes. CONCLUSION Visceral adiposity is independently associated with LV concentricity, a precursor to heart failure. Further study into the role of VF in LV remodeling as a potential therapeutic target is warranted.
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Affiliation(s)
- S A Abbasi
- Department of Medicine (Cardiology Division), Warren Alpert Medical School of Brown University, United States
| | - W G Hundley
- Department of Internal Medicine/Cardiology, Wake Forest University Health Sciences, Winston-Salem, NC, United States
| | - D A Bluemke
- National Institutes of Health Clinical Center, National Institute of Biomedical Imaging and Bioengineering, Bethesda, MD, United States
| | - M Jerosch-Herold
- Department of Radiology, Brigham and Women's Hospital, Boston, MA, United States
| | - R Blankstein
- Noninvasive Cardiovascular Imaging Program, Department of Medicine (Cardiovascular Division) and Department of Radiology, Brigham and Women's Hospital, Boston, MA, United States
| | - Steffen E Petersen
- William Harvey Research Institute, Barts and the London School of Medicine and Dentistry, London, UK
| | - Oliver J Rider
- Department of Cardiovascular Medicine, University of Oxford, Oxford, UK
| | - J A C Lima
- Division of Cardiology, Heart and Vascular Institute, Johns Hopkins School of Medicine, Baltimore, MD, Unites Sates
| | - M A Allison
- Department of Family and Preventive Medicine, University of California, San Diego, La Jolla, CA, United States
| | - V L Murthy
- Division of Cardiovascular Medicine, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, Unites states; Division of Nuclear Medicine, Department of Radiology, University of Michigan, Ann Arbor, MI, United States.
| | - R V Shah
- Department of Medicine, Cardiovascular Division, Beth Israel Deaconess Medical Center, Boston, MA, United States.
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Ganeshkumar T, Premalatha M, Gajalakshmi S, Abbasi SA. A new process for the rapid and direct vermicomposting of the aquatic weed salvinia (Salvinia molesta). BIORESOUR BIOPROCESS 2014. [DOI: 10.1186/s40643-014-0026-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Abstract
Background
The concept of high-rate vermicomposting was successfully used to achieve direct vermicomposting of the aquatic weed salvinia - without any precomposting or cow dung supplementation as previously reported processes for the vermicomposting of phytomass had necessitated.
Results
Both the epigeic species of earthworms that were explored, Eudrilus eugeniae and Eisenia fetida, provided efficient vermicast production with no mortality, persistent gain in body mass, and good fecundity over the 270-day-long course of the reactor operation. In this period, all reactors were pulse-fed at the solid retention time of 15 days and were operated in the pseudo-discretized continuous operation protocol developed earlier by the authors. With this, it was possible to almost completely dampen the influence of natural biodegradation of the feed or grazing by the earthworm born in the vermireactors. This has made it possible to link vermicast production directly to the ability of the earthworm to feed upon, and digest, salvinia. In turn, this enables accurate process monitoring and provides clear pointers on how to improve process efficiency.
Conclusion
The paper establishes the capability of high-rate vermicomposting technology developed earlier by the authors in direct and efficient vermicomposting of salvinia without any precomposting or manure supplementation. The findings have very significant implications in improving process economics and consequently process utility. No previous report exists in primary literature on the vermicomposting of salvinia.
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Karthikeyan M, Hussain N, Gajalakshmi S, Abbasi SA. Effect of vermicast generated from an allelopathic weed lantana (Lantana camara) on seed germination, plant growth, and yield of cluster bean (Cyamopsis tetragonoloba). Environ Sci Pollut Res Int 2014; 21:12539-12548. [PMID: 24946699 DOI: 10.1007/s11356-014-3103-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2013] [Accepted: 05/26/2014] [Indexed: 06/03/2023]
Abstract
In perhaps the first-ever study of its kind, the effect of vermicompost, derived solely from an allelopathic weed, on the germination, growth, and yield of a botanical species, has been carried out. In test plots, the soil was treated with the vermicompost of lantana (Lantana camara) at the rates of 5, 7.5, and 10 t ha(-1), and cluster bean (Cyamopsis tetragonoloba) was grown on it. The performance of these systems was compared with the systems in which the soil was fortified with inorganic fertilizers (IFs) in concentrations equivalent to those present in the respective vermicompost (VC) treatments. Additionally, a set of control was studied in which the soil was used without fortification by either VC or IF. It was seen that up to 51.5 % greater germination success occurred in the VC treatments compared to controls. VC also supported better plant growth in terms of stem diameter, shoot length, shoot mass, number of leaves, and leaf pigments. The positive impact extended up to fruit yield. In addition, vermicast application enhanced root nodule formation, reduced disease incidence, and allowed for a smaller number of stunted plants. The results indicate that allelopathic ingredients of lantana seem to have been totally eliminated during the course of its vermicomposting and that lantana vermicompost has the potential to support germination, growth, and fruit yield better than equivalent quantities of IFs.
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Affiliation(s)
- M Karthikeyan
- Center for Pollution Control and Environmental Engineering, Pondicherry University, Chinnakalapet, Puducherry, 605014, India
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Rafiq Kumar M, Tauseef SM, Abbasi T, Abbasi SA. Control of amphibious weed ipomoea (Ipomoea carnea) by utilizing it for the extraction of volatile fatty acids as energy precursors. J Adv Res 2014; 6:73-8. [PMID: 25685545 PMCID: PMC4293666 DOI: 10.1016/j.jare.2014.05.006] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2014] [Revised: 05/21/2014] [Accepted: 05/22/2014] [Indexed: 11/25/2022] Open
Abstract
Volatile fatty acids (VFAs), comprising mainly of acetic acid and lesser quantities of propionic and butyric acids, are generated when zoomass or phytomass is acted upon by acidogenic and acetogenic microorganisms. VFAs can be utilized by methanogens under anaerobic conditions to generate flammable methane–carbon dioxide mixtures known as ‘biogas’. Acting on the premise that this manner of VFA utilization for generating relatively clean energy can be easily accomplished in a controlled fashion in conventional biogas plants as well as higher-rate anaerobic digesters, we have carried out studies aimed to generate VFAs from the pernicious weed ipomoea (Ipomoea carnea). The VFA extraction was accomplished by a simple yet effective technology, appropriate for use even by laypersons. For this acid-phase reactors were set, to which measured quantities of ipomoea leaves were charged along with water inoculated with cow dung. The reactors were stirred intermittently. It was found that VFA production started within hours of the mixing of the reactants and peaked by the 10th or 11th day in all the reactors, effecting a conversion of over 10% of the biomass into VFAs. The reactor performance had good reproducibility and the process appeared easily controllable, frugal and robust.
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Affiliation(s)
- M Rafiq Kumar
- Center for Pollution Control and Environmental Engineering, Pondicherry University, Puducherry 605014, India
| | - S M Tauseef
- Center for Pollution Control and Environmental Engineering, Pondicherry University, Puducherry 605014, India
| | - Tasneem Abbasi
- Center for Pollution Control and Environmental Engineering, Pondicherry University, Puducherry 605014, India
| | - S A Abbasi
- Center for Pollution Control and Environmental Engineering, Pondicherry University, Puducherry 605014, India
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Premalatha M, Abbasi T, Abbasi SA. A critical view on the eco-friendliness of small hydroelectric installations. Sci Total Environ 2014; 481:638-643. [PMID: 24332792 DOI: 10.1016/j.scitotenv.2013.11.047] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2012] [Revised: 11/05/2013] [Accepted: 11/08/2013] [Indexed: 06/03/2023]
Abstract
Renewable energy sources are widely perceived as 'clean', 'green', and 'inexhaustible'. In recent years the spectre of global warming and ocean acidification, which has been primarily attributed to fossil fuel burning, has brought renewable energy at the forefront of most climate change mitigation strategies. There is strong advocacy for large-scale substitution of conventional energy sources with the renewables on the premise that such a move would substantially reduce environmental degradation and global warming. These sentiments are being echoed by scientists and policy makers as well as environmental activists all over the world. 'Small hydro', which generally represents hydroelectric power projects of capacities 25 MW or lower, is one of the renewable energy options which is believed to be clean and sustainable even as its bigger version, large hydro, is known to cause several strongly adverse environmental impacts. This paper brings out that the prevailing perception of 'eco-friendliness' of small hydro is mainly due to the fact that it has only been used to a very small extent so far. But once it is deployed at a scale comparable to fossil fuel use, the resulting impacts would be quite substantially adverse. The purpose is not to denegrade small hydro, less so to advocate use of fossil fuels. It, rather, is to bring home the point that a much more realistic and elaborate assessment of the likely direct as well as indirect impacts of extensive utilization of this energy source than has been done hitherto is necessary.
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Affiliation(s)
- M Premalatha
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Chinnakalapet, Puducherry 605 014, India
| | - Tasneem Abbasi
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Chinnakalapet, Puducherry 605 014, India.
| | - S A Abbasi
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Chinnakalapet, Puducherry 605 014, India
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Anuradha J, Abbasi T, Abbasi SA. An eco-friendly method of synthesizing gold nanoparticles using an otherwise worthless weed pistia (Pistia stratiotes L.). J Adv Res 2014; 6:711-20. [PMID: 27563461 PMCID: PMC4988642 DOI: 10.1016/j.jare.2014.03.006] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2013] [Revised: 03/07/2014] [Accepted: 03/28/2014] [Indexed: 11/25/2022] Open
Abstract
A biomimetic method of gold nanoparticles synthesis utilizing the highly invasive aquatic weed pistia (Pistia stratiotes) is presented. In an attempt to utilize the entire plant, the efficacy of the extracts of all its parts – aerial and submerged – was explored with different proportions of gold (III) solution in generating gold nanoparticles (GNPs). The progress of the synthesis, which occurred at ambient temperature and pressure and commenced soon after mixing the pistia extracts and gold (III) solutions, was tracked using UV–visible spectrophotometry. The electron micrographs of the synthesized GNPs revealed that, depending on the metal-extract concentrations used in the synthesis, GNPs of either monodispersed spherical shape were formed or there was anisotropy resulting in a mixture of triangular, hexagonal, pentagonal, and truncated triangular shaped GNPs. This phenomenon was witnessed with the extracts of aerial parts as well as submerged parts of pistia. The presence of gold atoms in the nanoparticles was confirmed from the EDAX and X-ray diffraction studies. The FT-IR spectral study indicated that the primary and secondary amines associated with the polypeptide biomolecules could have been responsible for the reduction of the gold (III) ions to GNPs and their subsequent stabilization.
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Affiliation(s)
- J Anuradha
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Puducherry 605 014, India
| | - Tasneem Abbasi
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Puducherry 605 014, India
| | - S A Abbasi
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Puducherry 605 014, India
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Groarke JD, Shah RV, Waller AH, Abbasi SA, Kwong RY, Blankstein R, Steigner M. 1049Left atrial volume quantification by cardiac magnetic
resonance imaging: 2-dimensional biplane area-length method versus 3-dimensional
chamber reconstruction technique. Eur Heart J Cardiovasc Imaging 2013. [DOI: 10.1093/ehjci/jet070bf] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Tauseef SM, Premalatha M, Abbasi T, Abbasi SA. Methane capture from livestock manure. J Environ Manage 2013; 117:187-207. [PMID: 23376302 DOI: 10.1016/j.jenvman.2012.12.022] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2012] [Revised: 11/03/2012] [Accepted: 12/24/2012] [Indexed: 06/01/2023]
Abstract
It has been estimated that livestock manure contributes about 240 million metric tons of carbon dioxide equivalent of methane to the atmosphere and represents one of the biggest anthropogenic sources of methane. Considering that methane is the second biggest contributor to global warming after carbon dioxide, it is imperative that ways and means are developed to capture as much of the anthropogenic methane as possible. There is a major associated advantage of methane capture: its use as a source of energy which is comparable in 'cleanness' to natural gas. The present review dwells upon the traditional ways of methane capture used in India, China, and other developing countries for providing energy to the rural poor. It then reviews the present status of methane capture from livestock manure in developed countries and touches upon the prevalent trends.
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Affiliation(s)
- S M Tauseef
- Centre for Pollution Control and Environmental Engineering, Pondicherry University, Chinnakalapet, Puducherry 605 014, India
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Amjad A, Mirza IA, Abbasi SA, Farwa U, Malik N, Zia F. Modified Hodge test: A simple and effective test for detection of carbapenemase production. Iran J Microbiol 2011; 3:189-93. [PMID: 22530087 PMCID: PMC3330182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
BACKGROUND AND OBJECTIVES Resistance among bacterial isolates is the leading cause of increased mortality and morbidity worldwide. Carbapenems once thought to be effective are becoming ineffective mostly due to the emergence of carbapenemase. This study was designed to determine in vitro efficacy of Modified Hodge test for detection of carbapenemase production in Gram negative rods. MATERIAL AND METHODS The study was done in the Department of Microbiology, Armed Forces Institute of Pathology Rawalpindi Pakistan from January 2010 to December 2010. A total of 200 Gram negative rods from different clinical samples were taken. Those isolates which showed intermediate or susceptible zones i.e 16mm-21mm on disc diffusion were included in the study. These isolates were then subjected to Modified Hodge test. RESULT Out of 200 isolates, 138 (69%) were positive for carbapenemase production by Modified Hodge test. Out of 138 MHT positive organisms, the frequency of E. coli was 38%, followed by Pseudomonas aeruginosa (30%), Klebsiella pneumoniae (17%), Acinetobacter baumannii (12%), Citrobacter diversus (2%) and Enterobacter agglomerans (1.4%). CONCLUSION Modified Hodge test is a simple test which can be performed in the routine lab for detection of carbapenemases in isolates showing intermediate or sensitive zone diameter on disc diffusion.
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Affiliation(s)
- A Amjad
- Corresponding author: Dr. Alina Amjad Address: Department of Microbiology, Armed Forces Institute of Pathology, Rawalpindi Pakistan. Tel: +333-5191282. E-mail:
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Abstract
Water quality indices (WQIs), which translate numerical values of several water quality characteristics of a sample into a single value, play a very important role in the monitoring, comparison and control of water quality. The WQIs of modern and post-modern times have been almost exclusively based on physical and chemical characteristics, and have seldom included 'biological' characteristics other than biochemical oxygen demand (BOD) and faecal coliforms. During the last three decades of the 20th century, indices based on bioassessment have been increasingly used in some developed countries, besides South Africa and Serbia, to complement the conventional WQIs, but the rest of the world continues to base its WQIs predominantly on physical and chemical characteristics. The serious drawbacks of this approach have been elucidated in this paper and, against that background, the state-of-the-art of biotic indices has been summarized. The paper makes a strong case for greater reliance on bioassessment-based WQls, especially by developing countries, to strengthen the diagnostic value of the conventional WQls.
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Affiliation(s)
- Tasneem Abbasi
- Centre for Pollution Control & Environmental Engineering, Pondicherry University, Chinakalapet, Puducherry 605 014, India
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Abdolhamidzadeh B, Abbasi T, Rashtchian D, Abbasi SA. Corrigendum to "A new method for assessing domino effect in chemical process industry" [J. Hazard. Mater. 182 (2010) 416-426]. J Hazard Mater 2010; 184:877. [PMID: 33592812 DOI: 10.1016/j.jhazmat.2010.08.063] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Affiliation(s)
- Bahman Abdolhamidzadeh
- Center for Process Design, Safety and Loss Prevention, Department of Chemical and Petroleum Engineering, Sharif University of Technology, Tehran, Iran
| | - Tasneem Abbasi
- Center for Pollution Control and Environmental Engineering, Pondicherry University, Kalapet, Pondicherry 605 014, India
| | - D Rashtchian
- Center for Process Design, Safety and Loss Prevention, Department of Chemical and Petroleum Engineering, Sharif University of Technology, Tehran, Iran
| | - S A Abbasi
- Center for Pollution Control and Environmental Engineering, Pondicherry University, Kalapet, Pondicherry 605 014, India.
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Abdolhamidzadeh B, Abbasi T, Rashtchian D, Abbasi SA. A new method for assessing domino effect in chemical process industry. J Hazard Mater 2010; 182:416-426. [PMID: 20619961 DOI: 10.1016/j.jhazmat.2010.06.049] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2010] [Revised: 06/11/2010] [Accepted: 06/12/2010] [Indexed: 05/29/2023]
Abstract
A new methodology is presented with which the likely impact of accident in one process unit of an industry on other process units can be forecast and assessed. The methodology is based on Monte Carlo Simulation and overcomes the limitations of analytical methods, used hitherto, which were inherently limited in their ability to handle the uncertainty and the complexity associated with domino effect phenomena. The methodology has been validated and its applicability has been demonstrated with two case studies.
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Affiliation(s)
- Bahman Abdolhamidzadeh
- Center for Process Design, Safety and Loss Prevention, Department of Chemical and Petroleum Engineering, Sharif University of Technology, Tehran, Iran
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Abbasi T, Pasman HJ, Abbasi SA. A scheme for the classification of explosions in the chemical process industry. J Hazard Mater 2010; 174:270-280. [PMID: 19857922 DOI: 10.1016/j.jhazmat.2009.09.047] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2009] [Revised: 09/07/2009] [Accepted: 09/09/2009] [Indexed: 05/28/2023]
Abstract
All process industry accidents fall under three broad categories-fire, explosion, and toxic release. Of these fire is the most common, followed by explosions. Within these broad categories occur a large number of sub-categories, each depicting a specific sub-type of a fire/explosion/toxic release. But whereas clear and self-consistent sub-classifications exist for fires and toxic releases, the situation is not as clear vis a vis explosions. In this paper the inconsistencies and/or shortcomings associated with the classification of different types of explosions, which are seen even in otherwise highly authentic and useful reference books on process safety, are reviewed. In its context a new classification is attempted which may, hopefully, provide a frame-of-reference for the future.
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Affiliation(s)
- Tasneem Abbasi
- Centre for Pollution Control & Energy Technology, Pondicherry University, Kalapet, Puducherry 605014, India
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Abbasi T, Abbasi SA. Water quality management of rooftop rainwater harvesting systems. J Environ Sci Eng 2009; 51:325-330. [PMID: 21117427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
The ancient technique of harvesting rainwater falling on rooftops, which had been forgotten after the advent of large-scale centralized water resource systems like dam-based reservoirs, has staged a global comeback in the post-modern era. It is expected that in the near future all dwellings everywhere will be equipped to harvest and use rainwater. Such widespread use of rooftop rainwater harvesting makes it very important that the water quality aspects associated with it are clearly understood and managed. The present paper addresses the related issues. The pathways by which pollutants can enter in a rainwater harvest have been traced and the strategies to manage the water quality, at pre-harvest as well as post-harvest stages, have been discussed.
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Affiliation(s)
- Tasneem Abbasi
- Centre for Pollution Control and Energy Technology, Pondicherry University, Chinnakalapet, Puducherry - 605 014
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Ganesh PS, Gajalakshmi S, Abbasi SA. Vermicomposting of the leaf litter of acacia (Acacia auriculiformis): possible roles of reactor geometry, polyphenols, and lignin. Bioresour Technol 2009; 100:1819-1827. [PMID: 19026533 DOI: 10.1016/j.biortech.2008.09.051] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2007] [Revised: 09/18/2008] [Accepted: 09/22/2008] [Indexed: 05/27/2023]
Abstract
Vermicomposting of the pre-composted leaf litter of acacia (Acacia auriculiformis) was studied in reactors of identical volume but with surface area: height ratios varying from 4 to 250. In separate sets of experiments with these reactors, epigeic earthworm species Eudrilus eugeniae and anecic earthworm species Lampito mauritii were employed at densities of 75 and 150 adult animals per litre of reactor volume. The results reveal that greater the surface area: volume ratio of the reactor, higher is the vermicast output in terms of vermicast output per animal; the more densely populated reactors were comparatively under-productive. Even as the vermicast production remained consistently high in all the reactors, there was significant earthworm mortality throughout the course of the experiments and the worms who survived, steadily lost weight with time. A detailed investigation of the possible causes revealed that, whereas the C:N ratio of acacia compost was comparable with that of other substrates; the polyphenols and lignin content were much higher. Studies by other authors on leaf litter consumption by earthworms in natural or man-made forests have indicated that leaf litter rich in polyphenols and lignin are not preferred by most species of earthworm. This may perhaps be the reason for the high rate of mortality and weight loss in earthworms forced to feed upon acacia in the experiments conducted by the authors.
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Affiliation(s)
- P Sankar Ganesh
- Centre for Pollution Control and Energy Technology, Pondicherry University, Kalapet, Puducherry, India
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Sankar Ganesh P, Sanjeevi R, Gajalakshmi S, Ramasamy EV, Abbasi SA. Recovery of methane-rich gas from solid-feed anaerobic digestion of ipomoea (Ipomoea carnea). Bioresour Technol 2008; 99:812-8. [PMID: 17368892 DOI: 10.1016/j.biortech.2007.01.024] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2006] [Revised: 01/20/2007] [Accepted: 01/21/2007] [Indexed: 05/14/2023]
Abstract
Studies are presented on new types of anaerobic digesters in which chopped or dry crushed Ipomoea carnea was fed without any other pretreatment, in an attempt to develop commercially viable means of utilizing the otherwise very harmful plant. Two types of solid-feed anaerobic digesters (SFADs) were studied. The first type had a single vessel in which the bottom 35% portion was separated from the top portion by a perforated PVC disk. The weed was charged from the top and inoculated with anaerobically digested cowdung-water slurry. The fermentation of the weed in the reactor led to the formation of volatile fatty acids (VFAs) plus some biogas. The leachate, rich in the VFAs, was passed through the perforated PVC sheet and collected in the lower portion of the vessel. The other type of reactors had two vessels, the first one was fully charged with the weed and the second received the VFA leachate. With both types were attached upflow anaerobic filters (UAFs) which converted the leachate into combustible biogas consisting of approximately 70% methane. All SFADs developed very consistent performance in terms of biogas yield within 17 weeks of start. The two-compartment reactors yielded significantly more biogas than the single-compartment reactors of corresponding total volume, and the reactors with which anaerobic filters (AF) were attached yielded more biogas than the ones without AF. The best performing units generated 2.41m(3) of biogas per m(3) of digester volume, as compared to 0.1-0.2m(3) of biogas, m(-3)d(-1), obtainable with conventional digesters. This indicates the viability of this technology. The spent weed can be vermicomposted directly to obtain good soil-conditioner cum fertilizer; earthworm Eudrilus eugeniae produced 540mg vermicast per animal every day, achieving near total conversion of feed to vermicast in 20 days. The proposed systems, thus, makes it possible to accomplish total utilization of ipomoea.
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Affiliation(s)
- P Sankar Ganesh
- Centre for Pollution Control and Energy Technology, Pondicherry University, Pondicherry 605 014, India
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Abstract
Pseudo-ainhum is an auto-amputation of the digits. Although extremely rare, it is a traumatic and painful experience that can be alleviated with early recognition and intervention. The scientific literature is filled with reports of this interesting but unfortunate phenomenon. To date, a firm causative aetiology has not yet been established. Although reports on this phenomenon have attempted to further our understanding of pseudo-ainhum, a clear understanding has been complicated by the interchangeable use of terms describing this auto-amputation. In this review, we discuss the current understanding, diagnostic criteria, and management of pseudo-ainhum. Furthermore, the nomenclature of pseudo-ainhum is clarified. Ideally, this will allow for more efficient exploration of pseudo-ainhum, its causes, and therapeutic approaches.
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Affiliation(s)
- R M Rashid
- Loyola Stritch School of Medicine, Maywood, IL 60153, USA.
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Abbasi T, Abbasi SA. The boiling liquid expanding vapour explosion (BLEVE): mechanism, consequence assessment, management. J Hazard Mater 2007; 141:489-519. [PMID: 17113225 DOI: 10.1016/j.jhazmat.2006.09.056] [Citation(s) in RCA: 80] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2005] [Revised: 06/30/2006] [Accepted: 07/10/2006] [Indexed: 05/12/2023]
Abstract
Among the most devastating of accidents likely in chemical process industry is the boiling liquid expanding vapour explosion (BLEVE). It is accompanied by highly destructive blast waves and missiles. In most situations there is also a fireball or a toxic gas cloud. The damaging effect of BLEVEs is reflected in the fact that the 80-odd major BLEVEs that have occurred between 1940 and 2005 have claimed over a 1000 lives and have injured over 10,000 persons besides harming property worth billions of dollars. Release of toxic chemicals like chlorine and phosgene from BLEVEs have damaged large chunks of areas surrounding the BLEVE site. This paper presents an overview of the mechanism, the causes, the consequences, and the preventive strategies associated with BLEVEs.
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Affiliation(s)
- Tasneem Abbasi
- Center for Pollution Control and Energy Technology, Pondicherry University, Pondicherry 605 014, India
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Abbasi T, Abbasi SA. Dust explosions-cases, causes, consequences, and control. J Hazard Mater 2007; 140:7-44. [PMID: 17194531 DOI: 10.1016/j.jhazmat.2006.11.007] [Citation(s) in RCA: 111] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2006] [Revised: 11/03/2006] [Accepted: 11/06/2006] [Indexed: 05/13/2023]
Abstract
Dust explosions pose the most serious and widespread of explosion hazards in the process industry alongside vapour cloud explosions (VCE) and boiling liquid expanding vapour explosions (BLEVE). Dust explosions almost always lead to serious financial losses in terms of damage to facilities and down time. They also often cause serious injuries to personnel, and fatalities. We present the gist of the dust explosion state-of-the-art. Illustrative case studies and past accident analyses reflect the high frequency, geographic spread, and damage potential of dust explosions across the world. The sources and triggers of dust explosions, and the measures with which different factors associated with dust explosions can be quantified are reviewed alongside dust explosion mechanism. The rest of the review is focused on the ways available to prevent dust explosion, and on cushioning the impact of a dust explosion by venting when the accident does take place.
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Affiliation(s)
- Tasneem Abbasi
- Center for Pollution Control and Energy Technology, Pondicherry University, Pondicherry 605014, India
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Sarkar C, Abbasi SA. Cellular automata-based forecasting of the impact of accidental fire and toxic dispersion in process industries. J Hazard Mater 2006; 137:8-30. [PMID: 16713088 DOI: 10.1016/j.jhazmat.2006.01.081] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2004] [Revised: 01/12/2006] [Accepted: 01/13/2006] [Indexed: 05/09/2023]
Abstract
The strategies to prevent accidents from occurring in a process industry, or to minimize the harm if an accident does take place, always revolve around forecasting the likely accidents and their impacts. Based on the likely frequency and severity of the accidents, resources are committed towards preventing the accidents. Nearly all techniques of ranking hazardous units, be it the hazard and operability studies, fault tree analysis, hazard indice, etc.--qualitative as well as quantitative--depend essentially on the assessment of the likely frequency and the likely harm accidents in different units may cause. This fact makes it exceedingly important that the forecasting the accidents and their likely impact is done as accurately as possible. In the present study we introduce a new approach to accident forecasting based on the discrete modeling paradigm of cellular automata. In this treatment an accident is modeled as a self-evolving phenomena, the impact of which is strongly influenced by the size, nature, and position of the environmental components which lie in the vicinity of the accident site. The outward propagation of the mass, energy and momentum from the accident epicenter is modeled as a fast diffusion process occurring in discrete space-time coordinates. The quantum of energy and material that would flow into each discrete space element (cell) due to the accidental release is evaluated and the degree of vulnerability posed to the receptors if present in the cell is measured at the end of each time element. This approach is able to effectively take into account the modifications in the flux of energy and material which occur as a result of the heterogeneous environment prevailing between the accident epicenter and the receptor. Consequently, more realistic accident scenarios are generated than possible with the prevailing techniques. The efficacy of the approach has been illustrated with case studies.
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Affiliation(s)
- Chinmoy Sarkar
- Center for Pollution Control and Energy Technology, Pondicherry University, Pondicherry 605 014, India
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Sarkar C, Abbasi SA. Qualidex--a new software for generating water quality indices. Environ Monit Assess 2006; 119:201-31. [PMID: 16741825 DOI: 10.1007/s10661-005-9023-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2005] [Accepted: 08/22/2005] [Indexed: 05/09/2023]
Abstract
Water quality indices are necessary for resolving lengthy, multi-parameter, water analysis reports into single digit scores. This, in turn, is essential for comparing the water quality of different sources and in monitoring the changes in the water quality of a given source as a function of time and other influencing factors. In this paper we present the computer-automated tool QUALIDEX (water QUALIty inDEX), which has been developed by us to generate and operate water quality indices. Several popular indices--such as the Oregon Water Quality Index developed in the 1970s by Oregon Department of Environmental Quality and later updated in 1995, the Aquatic Toxicity Index developed by Wepener and coworkers for protection of aquatic life at the Olifants river, Kruger National Park, South Africa, the water quality index developed by Dinius in 1987, the Overall Index of Pollution (of surface waters) developed at the National Environmental Engineering Research Institute (NEERI), and the water quality index of the Central Pollution Control Board (CPCB)--have also been added to QUALIDEX in modular form. There is also a New water quality index sub-module which enables the user to generate his or her own index and compare its performance with these well-known indices. The package is also capable of analyzing the variations in the water quality of different sites at different times. The software has been coded in Visual C++ and has been integrated with MS Access database.
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Affiliation(s)
- Chinmoy Sarkar
- Centre for Pollution Control and Energy Technology, Pondicherry University, Pondicherry, 605014, India
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Gajalakshmi S, Ramasamy EV, Abbasi SA. Composting-vermicomposting of leaf litter ensuing from the trees of mango (Mangifera indica). Bioresour Technol 2005; 96:1057-1061. [PMID: 15668202 DOI: 10.1016/j.biortech.2004.09.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2004] [Revised: 09/03/2004] [Accepted: 09/07/2004] [Indexed: 05/24/2023]
Abstract
Litter of the mango (Mangifera indica) tree leaves was composted and then converted into vermicast by the action of the earthworm Eudrilus eugeniae Kinberg. After over nine months of continuous operation the vermireactors with 62.5 animals l(-1) generated approximately 13.6g vermicast per litre of reactor volume (l) per day (d) whereas the reactors with 75 animals l(-1) produced approximately 14.9 g vermicast l(-1) d(-1). This difference in performance of the reactors operating in duplicate at the two different earthworm densities was statistically significant (> or = 90% confidence level) for most of the nine-month span. The animals grew well in all reactors, increasing their zoomass by approximately 103% and producing approximately 157 offspring. Not a single of the 1100 animals died during the first four months. In the subsequent five months a total of 122 worms died, representing a loss of approximately 2% per month. We attribute this to the normal process of ageing. The ability of the earthworms to survive, grow and breed in the vermireactors fed with composted mango tree leaves, and a rising trend in vermicast output inspite of the death of a few worms after four months of reactor operation, indicate the sustainability of this type of vermireactors. The studies also indicate that even better vermireactor efficiency may be possible by modifying the reactor geometry. Studies on changes in C:N ratio during composting and vermicomposting revealed that whereas composting helped in lowering the ratio due to loss of carbon in bacterial metabolism, vermicomposting had no such effect on the ratio.
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Affiliation(s)
- S Gajalakshmi
- Centre for Pollution Control and Energy Technology, Pondicherry University, Kalapet, Pondicherry 605 014, India
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Gajalakshmi S, Abbasi SA. Vermiconversion of paper waste by earthworm born and grown in the waste-fed reactors compared to the pioneers raised to adulthood on cowdung feed. Bioresour Technol 2004; 94:53-56. [PMID: 15081487 DOI: 10.1016/j.biortech.2003.11.015] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2003] [Revised: 10/02/2003] [Accepted: 11/05/2003] [Indexed: 05/24/2023]
Abstract
The performance of four species of earthworm--Eudrilus eugeniae, Kinberg, Drawida willsi Michaelsen, Lampito mauritii, Kinberg and Perionyx excavatus, Perrier--born and grown in vermireactors fed with paper waste was studied over six months, in terms of vermicast output per unit feed, production of offspring, and increase in worm zoomass. These were compared with the performance of the previous generation which had been raised to adulthood on cowdung as principal feed before shifting them to vermireactors operating on cowdung-spiked paper waste. The results indicated that except with D. willsi of which the second generation performed only a shade better than the first, there was significant improvement in vermicast output, animal growth, and reproduction in the second generation compared to the first. The results indicated that cowdung-spiked paper waste can be an adequate food for successive generations of earthworms and that reactors can be operated indefinitely on this feed. The results also indicated that the earthworm generations born and raised in vermireactors operated on this feed become better vermiconverters of this feed than the parent earthworms.
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Affiliation(s)
- S Gajalakshmi
- Centre for Pollution Control and Energy Technology, Pondicherry University, Kalapet, Pondicherry 605014, India
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Ramasamy EV, Gajalakshmi S, Sanjeevi R, Jithesh MN, Abbasi SA. Feasibility studies on the treatment of dairy wastewaters with upflow anaerobic sludge blanket reactors. Bioresour Technol 2004; 93:209-12. [PMID: 15051084 DOI: 10.1016/j.biortech.2003.11.001] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
The feasibility of using upflow anaerobic sludge blanket (UASB) reactors for the treatment of dairy wastewaters was explored. Two types of UASBs were used--one operating on anaerobic sludge granules developed by us from digested cowdung slurry (DCDS) and the other on the granules obtained from the reactors of M/s EID Parry treating sugar industry wastewaters. The reactors were operated at HRT of 3 and 12 h and on COD loading rates ranging from 2.4 kg per m3 of digester volume, per day to 13.5 kg m(-3) d(-1). At the 3 h HRT, the maximum COD reduction in the DCDS-seeded and the industrial sludge-seeded reactors was 95.6% and 96.3%, respectively, better than at 12 h HRT (90% and 92%, respectively). In both the reactors, the maximum, the second best, and the third best COD reduction occurred at the loading rates of 10.8, 8.6 and 7.2 kg m3 d(-1), respectively. At loading rates higher than 10.8 kg, the reactor performance dropped precipitously. Whereas in the first few months the reactors operating on sludge from EID Parry achieved better biodegradation of the waste, compared to the reactors operated on DCDS, the performance of the latter gradually improved and matched with the performance of the former.
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Affiliation(s)
- E V Ramasamy
- Centre for Pollution Control and Energy Technology, Pondicherry University, Kalapet, Pondicherry 605 014, India
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Gajalakshmi S, Abbasi SA. Neem leaves as a source of fertilizer-cum-pesticide vermicompost. Bioresour Technol 2004; 92:291-296. [PMID: 14766163 DOI: 10.1016/j.biortech.2003.09.012] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2003] [Revised: 06/15/2003] [Accepted: 09/05/2003] [Indexed: 05/24/2023]
Abstract
Vermicomposting of neem (Azadirachta indica A. Juss) was accomplished in "high-rate" reactors operated at the earthworm (Eudrilus eugeniae) densities of 62.5 and 75 animals per litre of reactor volume. Contrary to the fears that neem--a powerful nematicide--might not be palatable to the annelids, the earthworms fed voraciously on the neem compost, converting upto 7% of the feed into vermicompost per day. Indeed the worms grew faster and reproduced more rapidly in the neem-fed vermireactors than in the reactors fed with mango leaf litter earlier studied by the authors (Gajalakshmi et al., 2003). Another set of experiments on the growth, flowering, and fruition of brinjal (Solanum melongena) plants with and without fertilization with vermicompost, revealed that the vermicompost had a significantly beneficial impact.
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Affiliation(s)
- S Gajalakshmi
- Centre for Pollution Control and Energy Technology, Pondicherry University, Kalapet, Pondicherry 605-014, India
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Rubin RT, Abbasi SA, Rhodes ME, Czambel RK. Growth hormone responses to low-dose physostigmine administration: functional sex differences (sexual diergism) between major depressives and matched controls. Psychol Med 2003; 33:655-665. [PMID: 12785467 DOI: 10.1017/s0033291703007426] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
BACKGROUND Considerable endocrine and non-endocrine evidence supports the hypothesis of increased cholinergic activity relative to noradrenergic activity in major depression. We previously reported functional sex differences (sexual diergism) in hypothalamo-pituitary-adrenal cortical (HPA) hormone responses to the administration of low-dose physostigmine (PHYSO), a cholinesterase inhibitor, in 12 female and eight male unipolar major depressives and 12 female and eight male individually matched control subjects. Because growth hormone (GH) secretion also is influenced by cholinergic mechanisms, we measured GH in the samples from this study. METHOD Subjects underwent four test sessions 5-7 days apart: PHYSO (8 microg/kg i.v.), arginine vasopressin (AVP) (0.08 U/kg i.m.), PHYSO + AVP and saline control. The AVP was administered as a second stimulus to HPA axis hormone secretion. PHYSO and AVP produced no side-effects in about half the subjects and predominantly mild side-effects in the other half, with no significant patient-control differences. Point biserial correlations between side-effects (absent or present) after PHYSO and the corresponding GH responses were non-significant in all groups. RESULTS Afternoon baseline GH was significantly higher in the women than in the men, but it was not significantly different between the female or the male patients and their respective matched controls. AVP administration had no effect on GH. PHYSO administration acutely stimulated GH secretion, to a similar degree in the women and men. The depressed patients as a group had a significantly greater average post-PHYSO GH response than did their controls, with a trend toward a significant sex x diagnosis interaction: The female depressives had a significantly greater GH response than their female controls, whereas the male depressives had a similar GH response as their male controls. CONCLUSIONS These findings suggest sexual diergism (functional sex differences) in baseline and cholinergically stimulated plasma GH measures between major depressives and matched normal controls.
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Affiliation(s)
- R T Rubin
- Center for Neurosciences Research, Drexel University College of Medicine, Allegheny General Hospital, Pittsburgh, PA 15212-4772, USA
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Gajalakshmi S, Abbasi SA. Effect of the application of water hyacinth compost/vermicompost on the growth and flowering of Crossandra undulaefolia, and on several vegetables. Bioresour Technol 2002; 85:197-199. [PMID: 12227545 DOI: 10.1016/s0960-8524(02)00096-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The impact of the application of compost/vermicompost obtained from water hyacinth (Eichhornia crassipes, Mart. Solms) on plants was assessed in terms of growth and flowering of the angiosperm crossandra (Crossandra undulaefolia). Overall nine morphological, size, and yield attributes were studied in crossandra saplings raised on water hyacinth compost or vermicompost as compared to the untreated saplings. Application of vermicompost led to statistically significant improvement in the growth and flowering of crossandra compared to the untreated plants. The impact of compost was also beneficial but a little less distinct than the positive impact of vermicompost. Qualitative studies were simultaneously conducted in five kitchen gardens owned by farmers near Pondicherry. In three of these locations water hyacinth vermicompost was applied-and no other fertilizer-for months to different species of vegetables. Water hyacinth compost was similarly applied in another two locations. In all the locations no adverse effect on any of the plant species was observed. We believe these studies would help in dispelling the apprehension of farmers that compost/vermicompost obtained form a pernicious weed like water hyacinth may have deleterious effect on other plants.
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Affiliation(s)
- S Gajalakshmi
- Centre for Pollution Control & Energy Technology, Pondicherry University, Kalapet, India
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