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Jammer A, Akhtar SS, Amby DB, Pandey C, Mekureyaw MF, Bak F, Roth PM, Roitsch T. Enzyme activity profiling for physiological phenotyping within functional phenomics: plant growth and stress responses. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:5170-5198. [PMID: 35675172 DOI: 10.1093/jxb/erac215] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Accepted: 05/25/2022] [Indexed: 06/15/2023]
Abstract
High-throughput profiling of key enzyme activities of carbon, nitrogen, and antioxidant metabolism is emerging as a valuable approach to integrate cell physiological phenotyping into a holistic functional phenomics approach. However, the analyses of the large datasets generated by this method represent a bottleneck, often keeping researchers from exploiting the full potential of their studies. We address these limitations through the exemplary application of a set of data evaluation and visualization tools within a case study. This includes the introduction of multivariate statistical analyses that can easily be implemented in similar studies, allowing researchers to extract more valuable information to identify enzymatic biosignatures. Through a literature meta-analysis, we demonstrate how enzyme activity profiling has already provided functional information on the mechanisms regulating plant development and response mechanisms to abiotic stress and pathogen attack. The high robustness of the distinct enzymatic biosignatures observed during developmental processes and under stress conditions underpins the enormous potential of enzyme activity profiling for future applications in both basic and applied research. Enzyme activity profiling will complement molecular -omics approaches to contribute to the mechanistic understanding required to narrow the genotype-to-phenotype knowledge gap and to identify predictive biomarkers for plant breeding to develop climate-resilient crops.
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Affiliation(s)
- Alexandra Jammer
- Institute of Biology, University of Graz, NAWI Graz, Schubertstraße 51, 8010 Graz, Austria
| | - Saqib Saleem Akhtar
- Department of Plant and Environmental Sciences, Section of Crop Science, University of Copenhagen, Copenhagen, Denmark
| | - Daniel Buchvaldt Amby
- Department of Plant and Environmental Sciences, Section of Crop Science, University of Copenhagen, Copenhagen, Denmark
| | - Chandana Pandey
- Department of Plant and Environmental Sciences, Section of Crop Science, University of Copenhagen, Copenhagen, Denmark
| | - Mengistu F Mekureyaw
- Department of Plant and Environmental Sciences, Section of Crop Science, University of Copenhagen, Copenhagen, Denmark
| | - Frederik Bak
- Department of Plant and Environmental Sciences, Section of Microbial Ecology and Biotechnology, University of Copenhagen, Copenhagen, Denmark
| | - Peter M Roth
- Institute for Computational Medicine, University of Veterinary Medicine Vienna, Vienna, Austria
- International AI Future Lab, Technical University of Munich, Munich, Germany
| | - Thomas Roitsch
- Department of Plant and Environmental Sciences, Section of Crop Science, University of Copenhagen, Copenhagen, Denmark
- Department of Adaptive Biotechnologies, Global Change Research Institute, Czech Academy of Sciences, Brno, Czech Republic
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Wu Z, Huang L, Huang F, Lu G, Wei S, Liu C, Deng H, Liang G. Temporal transcriptome analysis provides molecular insights into flower development in red-flesh pitaya. ELECTRON J BIOTECHN 2022. [DOI: 10.1016/j.ejbt.2022.05.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
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Zhang Z, Zhao J, Tappiban P, Ying Y, Hu Y, Xu F, Bao J. Diurnal changes in starch molecular structures and expression profiles of starch biosynthesis enzymes in rice developing seeds. Int J Biol Macromol 2022; 209:2165-2174. [PMID: 35500783 DOI: 10.1016/j.ijbiomac.2022.04.197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2022] [Revised: 04/10/2022] [Accepted: 04/26/2022] [Indexed: 11/05/2022]
Abstract
The diurnal changes in the expression profiles of starch synthesis related enzymes (SSREs) has been previously studied in transitory starches, while its influences on storage starch molecular structures in the rice endosperm during seed development have not been elucidated. In this study, the changes in the transcript levels of starch synthesis related genes (SSRGs), the protein abundances and enzyme activities of SSREs as well as starch molecular structures in rice endosperm at 10 days after flowering (DAF) over the diurnal cycle were analyzed. It was found that the expression profiles of SSRG and the protein contents of SSREs displayed different diurnal patterns between two indica rice varieties with medium- and high-amylose content (AC), respectively. The expression levels of SSRGs were higher in the light time, and most SSREs also accumulated during this period except debranching enzymes. Amylose synthesis displayed distinct diurnal patterns in two rice varieties, which is attributed to the diurnal changes in the protein content of granule-bound starch synthase I (GBSSI), but amylopectin chain-length distributions (CLDs) remained unaltered due to its vast numbers of branches. The results provide the first step to understand the roles of each enzyme isoform involved in starch synthesis in response to diurnal regulation in rice endosperm.
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Affiliation(s)
- Zhongwei Zhang
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture and Zhejiang Province, College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Jiajia Zhao
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture and Zhejiang Province, College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Piengtawan Tappiban
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture and Zhejiang Province, College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Yining Ying
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture and Zhejiang Province, College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Yaqi Hu
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture and Zhejiang Province, College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Feifei Xu
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture and Zhejiang Province, College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Jinsong Bao
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture and Zhejiang Province, College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China; Hainan Institute of Zhejiang University, Yazhou Bay Science and Technology City, Yazhou District, Sanya 572025, China.
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Expression analyses of soluble starch synthase and starch branching enzyme isoforms in stem and leaf tissues under different photoperiods in lentil (Lens culinaris Medik.). Biologia (Bratisl) 2022. [DOI: 10.1007/s11756-021-00976-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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Ruan X, Wang Z, Su Y, Wang T. Population Genomics Reveals Gene Flow and Adaptive Signature in Invasive Weed Mikania micrantha. Genes (Basel) 2021; 12:1279. [PMID: 34440453 PMCID: PMC8394975 DOI: 10.3390/genes12081279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Revised: 08/15/2021] [Accepted: 08/18/2021] [Indexed: 11/28/2022] Open
Abstract
A long-standing and unresolved issue in invasion biology concerns the rapid adaptation of invaders to nonindigenous environments. Mikania micrantha is a notorious invasive weed that causes substantial economic losses and negative ecological consequences in southern China. However, the contributions of gene flow, environmental variables, and functional genes, all generally recognized as important factors driving invasive success, to its successful invasion of southern China are not fully understood. Here, we utilized a genotyping-by-sequencing approach to sequence 306 M. micrantha individuals from 21 invasive populations. Based on the obtained genome-wide single nucleotide polymorphism (SNP) data, we observed that all the populations possessed similar high levels of genetic diversity that were not constrained by longitude and latitude. Mikania micrantha was introduced multiple times and subsequently experienced rapid-range expansion with recurrent high gene flow. Using FST outliers, a latent factor mixed model, and the Bayesian method, we identified 38 outlier SNPs associated with environmental variables. The analysis of these outlier SNPs revealed that soil composition, temperature, precipitation, and ecological variables were important determinants affecting the invasive adaptation of M. micrantha. Candidate genes with outlier signatures were related to abiotic stress response. Gene family clustering analysis revealed 683 gene families unique to M. micrantha which may have significant implications for the growth, metabolism, and defense responses of M. micrantha. Forty-one genes showing significant positive selection signatures were identified. These genes mainly function in binding, DNA replication and repair, signature transduction, transcription, and cellular components. Collectively, these findings highlight the contribution of gene flow to the invasion and spread of M. micrantha and indicate the roles of adaptive loci and functional genes in invasive adaptation.
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Affiliation(s)
- Xiaoxian Ruan
- School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China; (X.R.); (Z.W.)
| | - Zhen Wang
- School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China; (X.R.); (Z.W.)
| | - Yingjuan Su
- School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China; (X.R.); (Z.W.)
- Research Institute of Sun Yat-sen University in Shenzhen, Shenzhen 518057, China
| | - Ting Wang
- College of Life Sciences, South China Agricultural University, Guangzhou 510641, China
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Ganie SA, Ahammed GJ. Dynamics of cell wall structure and related genomic resources for drought tolerance in rice. PLANT CELL REPORTS 2021; 40:437-459. [PMID: 33389046 DOI: 10.1007/s00299-020-02649-2] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2020] [Accepted: 12/04/2020] [Indexed: 05/03/2023]
Abstract
Cell wall plasticity plays a very crucial role in vegetative and reproductive development of rice under drought and is a highly potential trait for improving rice yield under drought. Drought is a major constraint in rice (Oryza sativa L.) cultivation severely affecting all developmental stages, with the reproductive stage being the most sensitive. Rice plants employ multiple strategies to cope with drought, in which modification in cell wall dynamics plays a crucial role. Over the years, significant progress has been made in discovering the cell wall-specific genomic resources related to drought tolerance at vegetative and reproductive stages of rice. However, questions remain about how the drought-induced changes in cell wall made by these genomic resources potentially influence the vegetative and reproductive development of rice. The possibly major candidate genes underlying the function of quantitative trait loci directly or indirectly associated with the cell wall plasticization-mediated drought tolerance of rice might have a huge promise in dissecting the putative genomic regions associated with cell wall plasticity under drought. Furthermore, engineering the drought tolerance of rice using cell wall-related genes from resurrection plants may have huge prospects for rice yield improvement. Here, we review the comprehensive multidisciplinary analyses to unravel different components and mechanisms involved in drought-induced cell wall plasticity at vegetative and reproductive stages that could be targeted for improving rice yield under drought.
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Affiliation(s)
- Showkat Ahmad Ganie
- Department of Biotechnology, Visva-Bharati, Santiniketan, West Bengal, 731235, India.
| | - Golam Jalal Ahammed
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, China.
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Lima LL, Frosi G, Lopes R, Santos MG. Remobilization of leaf Na + content and use of nonstructural carbohydrates vary depending on the time when salt stress begins in woody species. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 158:385-395. [PMID: 33250323 DOI: 10.1016/j.plaphy.2020.11.026] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Accepted: 11/17/2020] [Indexed: 06/12/2023]
Abstract
Basic mechanisms are known to promote salt tolerance in plants: a delay in Na+ uptake or rapid Na+ remobilization from leaf tissue. We measured dynamics of the Na+/K+ ratio and components of carbon metabolism during the first 72 h after saline stress (200 mM NaCl) began in Cenostigma pyramidale, a woody species, under controlled conditions. Saline stress at two times: one plant group at the beginning of the morning and the other in the evening. Stressed plants had three times more Na+ in leaves than did control plants in the first 24 h. However, in the next few hours, despite new applications of saline solution, the Na+/K+ ratio continued to decline. Several samples, including night treatments, provided evidence that this species uses Na+ recirculation mechanisms to endure salt stress. Effects of salt on the traits evaluated differed depending on the time when stress began. Between the two saline treatments, in the first 24 h after saline stress, gas exchange decreased more strongly in morning-stressed plants, when large amounts of Na+ reached the leaf and K+ left this organ. Nevertheless, when stress was applied in the evening, leaf Na+ remobilization was faster, and the soluble sugar/starch ratio remained greater than did the control. Our data suggested that time of the beginning of salt stress could change the level of damage. Morning-stressed plants synthesized greater amounts of proline, H2O2, and malondialdehyde than did night-stressed plants. We recommend that details regarding the time of stress be taken into consideration in physiological studies.
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Affiliation(s)
- Laís L Lima
- Botany Department, Federal University of Pernambuco, Recife, Pernambuco, 50670-901, Brazil
| | - Gabriella Frosi
- Botany Department, Federal University of Pernambuco, Recife, Pernambuco, 50670-901, Brazil; Départament de Biologie, Faculté des Sciences, Université de Sherbrooke, Sherbrooke, QC, Canada
| | - Rafaela Lopes
- Botany Department, Federal University of Pernambuco, Recife, Pernambuco, 50670-901, Brazil
| | - Mauro Guida Santos
- Botany Department, Federal University of Pernambuco, Recife, Pernambuco, 50670-901, Brazil.
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Frey LA, Baumann P, Aasen H, Studer B, Kölliker R. A Non-destructive Method to Quantify Leaf Starch Content in Red Clover. FRONTIERS IN PLANT SCIENCE 2020; 11:569948. [PMID: 33178239 PMCID: PMC7593268 DOI: 10.3389/fpls.2020.569948] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Accepted: 09/17/2020] [Indexed: 06/11/2023]
Abstract
Grassland-based ruminant livestock production provides a sustainable alternative to intensive production systems relying on concentrated feeds. However, grassland-based roughage often lacks the energy content required to meet the productivity potential of modern livestock breeds. Forage legumes, such as red clover, with increased starch content could partly replace maize and cereal supplements. However, breeding for increased starch content requires efficient phenotyping methods. This study is unique in evaluating a non-destructive hyperspectral imaging approach to estimate leaf starch content in red clover for enabling efficient development of high starch red clover genotypes. We assessed prediction performance of partial least square regression models (PLSR) using cross-validation, and validated model performance with an independent test set under controlled conditions. Starch content of the training set ranged from 0.1 to 120.3 mg g-1 DW. The best cross-validated PLSR model explained 56% of the measured variation and yielded a root mean square error (RMSE) of 17 mg g-1 DW. Model performance decreased when applying the trained model on the independent test set (RMSE = 29 mg g-1 DW, R 2 = 0.36). Different variable selection methods did not increase model performance. Once validated in the field, the non-destructive spectral method presented here has the potential to detect large differences in leaf starch content of red clover genotypes. Breeding material could be sampled and selected according to their starch content without destroying the plant.
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Affiliation(s)
- Lea Antonia Frey
- Molecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - Philipp Baumann
- Sustainable Agroecosystems, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - Helge Aasen
- Crop Science, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - Bruno Studer
- Molecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - Roland Kölliker
- Molecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
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Wang H, Zhou Q, Mao P. Ultrastructural and Photosynthetic Responses of Pod Walls in Alfalfa to Drought Stress. Int J Mol Sci 2020; 21:E4457. [PMID: 32585890 PMCID: PMC7352927 DOI: 10.3390/ijms21124457] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Revised: 06/20/2020] [Accepted: 06/22/2020] [Indexed: 11/25/2022] Open
Abstract
Increasing photosynthetic ability as a whole is essential for acquiring higher crop yields. Nonleaf green organs (NLGOs) make important contributions to photosynthate formation, especially under stress conditions. However, there is little information on the pod wall in legume forage related to seed development and yield. This experiment is designed for alfalfa (Medicago sativa) under drought stress to explore the photosynthetic responses of pod walls after 5, 10, 15, and 20 days of pollination (DAP5, DAP10, DAP15, and DAP20) based on ultrastructural, physiological and proteomic analyses. Stomata were evidently observed on the outer epidermis of the pod wall. Chloroplasts had intact structures arranged alongside the cell wall, which on DAP5 were already capable of producing photosynthate. The pod wall at the late stage (DAP20) still had photosynthetic ability under well-watered (WW) treatments, while under water-stress (WS), the structure of the chloroplast membrane was damaged and the grana lamella of thylakoids were blurry. The chlorophyll a and chlorophyll b concentrations both decreased with the development of pod walls, and drought stress impeded the synthesis of photosynthetic pigments. Although the activity of ribulose-1,5-bisphosphate carboxylase (RuBisCo) decreased in the pod wall under drought stress, the activity of phosphoenolpyruvate carboxylase (PEPC) increased higher than that of RuBisCo. The proteomic analysis showed that the absorption of light is limited due to the suppression of the synthesis of chlorophyll a/b binding proteins by drought stress. Moreover, proteins involved in photosystem I and photosystem II were downregulated under WW compared with WS. Although the expression of some proteins participating in the regeneration period of RuBisCo was suppressed in the pod wall subjected to drought stress, the synthesis of PEPC was induced. In addition, some proteins, which were involved in the reduction period of RuBisCo, carbohydrate metabolism, and energy metabolism, and related to resistance, including chitinase, heat shock protein 81-2 (Hsp81-2), and lipoxygenases (LOXs), were highly expressed for the protective response to drought stress. It could be suggested that the pod wall in alfalfa is capable of operating photosynthesis and reducing the photosynthetic loss from drought stress through the promotion of the C4 pathway, ATP synthesis, and resistance ability.
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Affiliation(s)
- Hui Wang
- Forage Seed Laboratory, Key Laboratory of Pratacultural Science, Beijing Municipality, China Agricultural University, Beijing 100193, China;
- College of Qinghai-Tibetan Plateau, Southwest Minzu University, Chengdu 610041, China;
| | - Qingping Zhou
- College of Qinghai-Tibetan Plateau, Southwest Minzu University, Chengdu 610041, China;
| | - Peisheng Mao
- Forage Seed Laboratory, Key Laboratory of Pratacultural Science, Beijing Municipality, China Agricultural University, Beijing 100193, China;
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Shahzad K, Zhang X, Guo L, Qi T, Bao L, Zhang M, Zhang B, Wang H, Tang H, Qiao X, Feng J, Wu J, Xing C. Comparative transcriptome analysis between inbred and hybrids reveals molecular insights into yield heterosis of upland cotton. BMC PLANT BIOLOGY 2020; 20:239. [PMID: 32460693 PMCID: PMC7251818 DOI: 10.1186/s12870-020-02442-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Accepted: 05/13/2020] [Indexed: 05/12/2023]
Abstract
BACKGROUND Utilization of heterosis has greatly improved the productivity of many crops worldwide. Understanding the potential molecular mechanism about how hybridization produces superior yield in upland cotton is critical for efficient breeding programs. RESULTS In this study, high, medium, and low hybrids varying in the level of yield heterosis were screened based on field experimentation of different years and locations. Phenotypically, high hybrid produced a mean of 14% more seed cotton yield than its better parent. Whole-genome RNA sequencing of these hybrids and their four inbred parents was performed using different tissues of the squaring stage. Comparative transcriptomic differences in each hybrid parent triad revealed a higher percentage of differentially expressed genes (DEGs) in each tissue. Expression level dominance analysis identified majority of hybrids DEGs were biased towards parent like expressions. An array of DEGs involved in ATP and protein binding, membrane, cell wall, mitochondrion, and protein phosphorylation had more functional annotations in hybrids. Sugar metabolic and plant hormone signal transduction pathways were most enriched in each hybrid. Further, these two pathways had most mapped DEGs on known seed cotton yield QTLs. Integration of transcriptome, QTLs, and gene co-expression network analysis discovered genes Gh_A03G1024, Gh_D08G1440, Gh_A08G2210, Gh_A12G2183, Gh_D07G1312, Gh_D08G1467, Gh_A03G0889, Gh_A08G2199, and Gh_D05G0202 displayed a complex regulatory network of many interconnected genes. qRT-PCR of these DEGs was performed to ensure the accuracy of RNA-Seq data. CONCLUSIONS Through genome-wide comparative transcriptome analysis, the current study identified nine key genes and pathways associated with biological process of yield heterosis in upland cotton. Our results and data resources provide novel insights and will be useful for dissecting the molecular mechanism of yield heterosis in cotton.
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Affiliation(s)
- Kashif Shahzad
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture, 38 Huanghe Dadao, Anyang, 455000 Henan China
| | - Xuexian Zhang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture, 38 Huanghe Dadao, Anyang, 455000 Henan China
| | - Liping Guo
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture, 38 Huanghe Dadao, Anyang, 455000 Henan China
| | - Tingxiang Qi
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture, 38 Huanghe Dadao, Anyang, 455000 Henan China
| | - Lisheng Bao
- Jinhua Department of Economic Special Technology Promotion, Jinhua, 321017 Zhejiang China
| | - Meng Zhang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture, 38 Huanghe Dadao, Anyang, 455000 Henan China
| | - Bingbing Zhang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture, 38 Huanghe Dadao, Anyang, 455000 Henan China
| | - Hailin Wang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture, 38 Huanghe Dadao, Anyang, 455000 Henan China
| | - Huini Tang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture, 38 Huanghe Dadao, Anyang, 455000 Henan China
| | - Xiuqin Qiao
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture, 38 Huanghe Dadao, Anyang, 455000 Henan China
| | - Juanjuan Feng
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture, 38 Huanghe Dadao, Anyang, 455000 Henan China
| | - Jianyong Wu
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture, 38 Huanghe Dadao, Anyang, 455000 Henan China
| | - Chaozhu Xing
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture, 38 Huanghe Dadao, Anyang, 455000 Henan China
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Batista-Silva W, Medeiros DB, Rodrigues-Salvador A, Daloso DM, Omena-Garcia RP, Oliveira FS, Pino LE, Peres LEP, Nunes-Nesi A, Fernie AR, Zsögön A, Araújo WL. Modulation of auxin signalling through DIAGETROPICA and ENTIRE differentially affects tomato plant growth via changes in photosynthetic and mitochondrial metabolism. PLANT, CELL & ENVIRONMENT 2019; 42:448-465. [PMID: 30066402 DOI: 10.1111/pce.13413] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Revised: 07/17/2018] [Accepted: 07/20/2018] [Indexed: 06/08/2023]
Abstract
Auxin modulates a range of plant developmental processes including embryogenesis, organogenesis, and shoot and root development. Recent studies have shown that plant hormones also strongly influence metabolic networks, which results in altered growth phenotypes. Modulating auxin signalling pathways may therefore provide an opportunity to alter crop performance. Here, we performed a detailed physiological and metabolic characterization of tomato (Solanum lycopersicum) mutants with either increased (entire) or reduced (diageotropica-dgt) auxin signalling to investigate the consequences of altered auxin signalling on photosynthesis, water use, and primary metabolism. We show that reduced auxin sensitivity in dgt led to anatomical and physiological modifications, including altered stomatal distribution along the leaf blade and reduced stomatal conductance, resulting in clear reductions in both photosynthesis and water loss in detached leaves. By contrast, plants with higher auxin sensitivity (entire) increased the photosynthetic capacity, as deduced by higher Vcmax and Jmax coupled with reduced stomatal limitation. Remarkably, our results demonstrate that auxin-sensitive mutants (dgt) are characterized by impairments in the usage of starch that led to lower growth, most likely associated with decreased respiration. Collectively, our findings suggest that mutations in different components of the auxin signalling pathway specifically modulate photosynthetic and respiratory processes.
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Affiliation(s)
- Willian Batista-Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - David B Medeiros
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Acácio Rodrigues-Salvador
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Danilo M Daloso
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Rebeca P Omena-Garcia
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Franciele Santos Oliveira
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Lilian Ellen Pino
- Departmento de Ciências Biológicas, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, Brazil
| | - Lázaro Eustáquio Pereira Peres
- Departmento de Ciências Biológicas, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, Brazil
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Alisdair R Fernie
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Agustín Zsögön
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
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Liu C, Feng N, Zheng D, Cui H, Sun F, Gong X. Uniconazole and diethyl aminoethyl hexanoate increase soybean pod setting and yield by regulating sucrose and starch content. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2019; 99:748-758. [PMID: 29999535 DOI: 10.1002/jsfa.9243] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2018] [Revised: 07/02/2018] [Accepted: 07/06/2018] [Indexed: 05/20/2023]
Abstract
BACKGROUND Uniconazole (S3307) and diethyl aminoethyl hexanoate (DA-6) are known plant growth regulators (PGRs). However, it is unknown if their regulation of sucrose and starch content can affect pod setting and yield in soybean. Herein, S3307 and DA-6 were foliar sprayed on soybean Hefeng50 and Kangxian6 at the beginning of the bloom cycle in field tests conducted over two years. RESULTS PGRs promoted the accumulation and distribution of plant biomass and significantly improved leaf photosynthetic rates. Sucrose and starch content increased after PGR treatment across organs and varieties. Accumulation and allocation of sucrose and starch content in soybean source organs are enhanced by PGRs, which supply high levels of assimilate to sink organs. Moreover, sucrose and starch contents in source and sink organs are positively correlated. S3307 and DA-6 also significantly increased pod setting rates and reduced flower and pod abscission rates, leading to increased yield. CONCLUSION S3307 and DA-6 promoted the accumulation and availability of sucrose and starch content in source organs and increased sucrose and starch content in flowers and pods or seeds, thereby maintaining the balance between source and sink organs and contributing to increased pod setting rates and soybean yield. © 2018 Society of Chemical Industry.
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Affiliation(s)
- Chunjuan Liu
- College of Agronomy, Heilongjiang Bayi Agricultural University, Daqing, China
| | - Naijie Feng
- College of Agronomy, Heilongjiang Bayi Agricultural University, Daqing, China
| | - Dianfeng Zheng
- College of Agronomy, Heilongjiang Bayi Agricultural University, Daqing, China
| | - Hongqiu Cui
- College of Agronomy, Heilongjiang Bayi Agricultural University, Daqing, China
| | - Fudong Sun
- College of Agronomy, Heilongjiang Bayi Agricultural University, Daqing, China
| | - Xiangwei Gong
- College of Agronomy, Heilongjiang Bayi Agricultural University, Daqing, China
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Lloyd JR, Kossmann J. Starch Trek: The Search for Yield. FRONTIERS IN PLANT SCIENCE 2019; 9:1930. [PMID: 30719029 PMCID: PMC6348371 DOI: 10.3389/fpls.2018.01930] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2018] [Accepted: 12/12/2018] [Indexed: 05/27/2023]
Abstract
Starch is a plant storage polyglucan that accumulates in plastids. It is composed of two polymers, amylose and amylopectin, with different structures and plays several roles in helping to determine plant yield. In leaves, it acts as a buffer for night time carbon starvation. Genetically altered plants that cannot synthesize or degrade starch efficiently often grow poorly. There have been a number of successful approaches to manipulate leaf starch metabolism that has resulted in increased growth and yield. Its degradation is also a source of sugars that can help alleviate abiotic stress. In edible parts of plants, starch often makes up the majority of the dry weight constituting much of the calorific value of food and feed. Increasing starch in these organs can increase this as well as increasing yield. Enzymes involved in starch metabolism are well known, and there has been much research analyzing their functions in starch synthesis and degradation, as well as genetic and posttranslational regulatory mechanisms affecting them. In this mini review, we examine work on this topic and discuss future directions that could be used to manipulate this metabolite for improved yield.
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Affiliation(s)
| | - Jens Kossmann
- Department of Genetics, Institute for Plant Biotechnology, University of Stellenbosch, Stellenbosch, South Africa
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14
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Annunziata MG, Apelt F, Carillo P, Krause U, Feil R, Koehl K, Lunn JE, Stitt M. Response of Arabidopsis primary metabolism and circadian clock to low night temperature in a natural light environment. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:4881-4895. [PMID: 30053131 PMCID: PMC6137998 DOI: 10.1093/jxb/ery276] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Accepted: 07/09/2018] [Indexed: 05/18/2023]
Abstract
Plants are exposed to varying irradiance and temperature within a day and from day to day. We previously investigated metabolism in a temperature-controlled greenhouse at the spring equinox on both a cloudy and a sunny day [daily light integral (DLI) of 7 mol m-2 d-1 and 12 mol m-2 d-1]. Diel metabolite profiles were largely captured in sinusoidal simulations at similar DLIs in controlled-environment chambers, except that amino acids were lower in natural light regimes. We now extend the DLI12 study by investigating metabolism in a natural light regime with variable temperature including cool nights. Starch was not completely turned over, anthocyanins and proline accumulated, and protein content rose. Instead of decreasing, amino acid content rose. Connectivity in central metabolism, which decreased in variable light, was not further weakened by variable temperature. We propose that diel metabolism operates better when light and temperature are co-varying. We also compared transcript abundance of 10 circadian clock genes in this temperature-variable regime with the temperature-controlled natural and sinusoidal light regimes. Despite temperature compensation, peak timing and abundance for dawn- and day-phased genes and GIGANTEA were slightly modified in the variable temperature treatment. This may delay dawn clock activity until the temperature rises enough to support rapid metabolism and photosynthesis.
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Affiliation(s)
| | - Federico Apelt
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Petronia Carillo
- University of Campania ‘Luigi Vanvitelli’, Via Vivaldi, Caserta, Italy
| | - Ursula Krause
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Regina Feil
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Karin Koehl
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - John E Lunn
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
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15
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Dong S, Zhang J, Beckles DM. A pivotal role for starch in the reconfiguration of 14C-partitioning and allocation in Arabidopsis thaliana under short-term abiotic stress. Sci Rep 2018; 8:9314. [PMID: 29915332 PMCID: PMC6006365 DOI: 10.1038/s41598-018-27610-y] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Accepted: 05/31/2018] [Indexed: 11/09/2022] Open
Abstract
Plant carbon status is optimized for normal growth but is affected by abiotic stress. Here, we used 14C-labeling to provide the first holistic picture of carbon use changes during short-term osmotic, salinity, and cold stress in Arabidopsis thaliana. This could inform on the early mechanisms plants use to survive adverse environment, which is important for efficient agricultural production. We found that carbon allocation from source to sinks, and partitioning into major metabolite pools in the source leaf, sink leaves and roots showed both conserved and divergent responses to the stresses examined. Carbohydrates changed under all abiotic stresses applied; plants re-partitioned 14C to maintain sugar levels under stress, primarily by reducing 14C into the storage compounds in the source leaf, and decreasing 14C into the pools used for growth processes in the roots. Salinity and cold increased 14C-flux into protein, but as the stress progressed, protein degradation increased to produce amino acids, presumably for osmoprotection. Our work also emphasized that stress regulated the carbon channeled into starch, and its metabolic turnover. These stress-induced changes in starch metabolism and sugar export in the source were partly accompanied by transcriptional alteration in the T6P/SnRK1 regulatory pathway that are normally activated by carbon starvation.
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Affiliation(s)
- Shaoyun Dong
- Department of Plant Sciences, University of California, One Shield Avenue, Davis, CA, 95616, USA
| | - Joshua Zhang
- Department of Plant Sciences, University of California, One Shield Avenue, Davis, CA, 95616, USA
| | - Diane M Beckles
- Department of Plant Sciences, University of California, One Shield Avenue, Davis, CA, 95616, USA.
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16
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Peters K, Worrich A, Weinhold A, Alka O, Balcke G, Birkemeyer C, Bruelheide H, Calf OW, Dietz S, Dührkop K, Gaquerel E, Heinig U, Kücklich M, Macel M, Müller C, Poeschl Y, Pohnert G, Ristok C, Rodríguez VM, Ruttkies C, Schuman M, Schweiger R, Shahaf N, Steinbeck C, Tortosa M, Treutler H, Ueberschaar N, Velasco P, Weiß BM, Widdig A, Neumann S, Dam NMV. Current Challenges in Plant Eco-Metabolomics. Int J Mol Sci 2018; 19:E1385. [PMID: 29734799 PMCID: PMC5983679 DOI: 10.3390/ijms19051385] [Citation(s) in RCA: 62] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Revised: 04/24/2018] [Accepted: 04/25/2018] [Indexed: 12/22/2022] Open
Abstract
The relatively new research discipline of Eco-Metabolomics is the application of metabolomics techniques to ecology with the aim to characterise biochemical interactions of organisms across different spatial and temporal scales. Metabolomics is an untargeted biochemical approach to measure many thousands of metabolites in different species, including plants and animals. Changes in metabolite concentrations can provide mechanistic evidence for biochemical processes that are relevant at ecological scales. These include physiological, phenotypic and morphological responses of plants and communities to environmental changes and also interactions with other organisms. Traditionally, research in biochemistry and ecology comes from two different directions and is performed at distinct spatiotemporal scales. Biochemical studies most often focus on intrinsic processes in individuals at physiological and cellular scales. Generally, they take a bottom-up approach scaling up cellular processes from spatiotemporally fine to coarser scales. Ecological studies usually focus on extrinsic processes acting upon organisms at population and community scales and typically study top-down and bottom-up processes in combination. Eco-Metabolomics is a transdisciplinary research discipline that links biochemistry and ecology and connects the distinct spatiotemporal scales. In this review, we focus on approaches to study chemical and biochemical interactions of plants at various ecological levels, mainly plant⁻organismal interactions, and discuss related examples from other domains. We present recent developments and highlight advancements in Eco-Metabolomics over the last decade from various angles. We further address the five key challenges: (1) complex experimental designs and large variation of metabolite profiles; (2) feature extraction; (3) metabolite identification; (4) statistical analyses; and (5) bioinformatics software tools and workflows. The presented solutions to these challenges will advance connecting the distinct spatiotemporal scales and bridging biochemistry and ecology.
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Affiliation(s)
- Kristian Peters
- Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany.
| | - Anja Worrich
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger-Str. 159, 07743 Jena, Germany.
- UFZ-Helmholtz-Centre for Environmental Research, Department Environmental Microbiology, Permoserstraße 15, 04318 Leipzig, Germany.
| | - Alexander Weinhold
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger-Str. 159, 07743 Jena, Germany.
| | - Oliver Alka
- Applied Bioinformatics Group, Center for Bioinformatics, University of Tübingen, Sand 14, 72076 Tübingen, Germany.
| | - Gerd Balcke
- Leibniz Institute of Plant Biochemistry, Cell and Metabolic Biology, Weinberg 3, 06120 Halle (Saale), Germany.
| | - Claudia Birkemeyer
- Institute of Analytical Chemistry, University of Leipzig, Linnéstr. 3, 04103 Leipzig, Germany.
| | - Helge Bruelheide
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Am Kirchtor 1, 06108 Halle (Saale), Germany.
| | - Onno W Calf
- Molecular Interaction Ecology, Institute for Water and Wetland Research (IWWR), Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands.
| | - Sophie Dietz
- Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany.
| | - Kai Dührkop
- Department of Bioinformatics, Friedrich Schiller University Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany.
| | - Emmanuel Gaquerel
- Centre for Organismal Studies, Heidelberg University, Im Neuenheimer Feld 360, 69120 Heidelberg, Germany.
| | - Uwe Heinig
- Weizmann Institute of Science, Faculty of Biochemistry, Department of Plant Sciences, 234 Herzl St., P.O. Box 26, Rehovot 7610001, Israel.
| | - Marlen Kücklich
- Institute of Biology, University of Leipzig, Talstraße 33, 04109 Leipzig, Germany.
| | - Mirka Macel
- Molecular Interaction Ecology, Institute for Water and Wetland Research (IWWR), Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands.
| | - Caroline Müller
- Chemical Ecology, Bielefeld University, Universitätsstr. 25, 33615 Bielefeld, Germany.
| | - Yvonne Poeschl
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
- Institute of Informatics, Martin Luther University Halle-Wittenberg, Von-Seckendorff-Platz 1, 06120 Halle (Saale), Germany.
| | - Georg Pohnert
- Institute of Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743 Jena, Germany.
| | - Christian Ristok
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
| | - Victor Manuel Rodríguez
- Group of Genetics, Breeding and Biochemistry of Brassica, Misión Biológica de Galicia (CSIC), Apartado 28, 36080 Pontevedra, Spain.
| | - Christoph Ruttkies
- Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany.
| | - Meredith Schuman
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany.
| | - Rabea Schweiger
- Chemical Ecology, Bielefeld University, Universitätsstr. 25, 33615 Bielefeld, Germany.
| | - Nir Shahaf
- Weizmann Institute of Science, Faculty of Biochemistry, Department of Plant Sciences, 234 Herzl St., P.O. Box 26, Rehovot 7610001, Israel.
| | - Christoph Steinbeck
- Institute of Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743 Jena, Germany.
| | - Maria Tortosa
- Group of Genetics, Breeding and Biochemistry of Brassica, Misión Biológica de Galicia (CSIC), Apartado 28, 36080 Pontevedra, Spain.
| | - Hendrik Treutler
- Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany.
| | - Nico Ueberschaar
- Institute of Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743 Jena, Germany.
| | - Pablo Velasco
- Group of Genetics, Breeding and Biochemistry of Brassica, Misión Biológica de Galicia (CSIC), Apartado 28, 36080 Pontevedra, Spain.
| | - Brigitte M Weiß
- Institute of Biology, University of Leipzig, Talstraße 33, 04109 Leipzig, Germany.
| | - Anja Widdig
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
- Institute of Biology, University of Leipzig, Talstraße 33, 04109 Leipzig, Germany.
- Research Group of Primate Kin Selection, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.
| | - Steffen Neumann
- Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany.
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
| | - Nicole M van Dam
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany.
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger-Str. 159, 07743 Jena, Germany.
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17
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Lakra N, Kaur C, Anwar K, Singla-Pareek SL, Pareek A. Proteomics of contrasting rice genotypes: Identification of potential targets for raising crops for saline environment. PLANT, CELL & ENVIRONMENT 2018; 41:947-969. [PMID: 28337760 DOI: 10.1111/pce.12946] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2016] [Revised: 02/13/2017] [Accepted: 02/19/2017] [Indexed: 05/23/2023]
Abstract
High salinity is one of the major problems in crop productivity, affecting seed germination as well as yield. In order to enhance tolerance of crops towards salinity, it is essential to understand the underlying physiological and molecular mechanisms. In this endeavor, study of contrasting genotypes of the same species differing in their response towards salinity stress can be very useful. In the present study, we have investigated temporal differences in morphological, physiological and proteome profiles of two contrasting genotypes of rice to understand the basis of salt tolerance. When compared to IR64 rice, Pokkali, the salt-tolerant wild genotype, has enhanced capacity to cope with stress, better growth rate and possesses efficient antioxidant system, as well as better photosynthetic machinery. Our proteome studies revealed a higher and an early abundance of proteins involved in stress tolerance and photosynthesis in Pokkali in comparison with IR64, which, in contrast, showed greater changes in metabolic machinery even during early duration of stress. Our findings suggest important differences in physicochemical and proteome profiles of the two genotypes, which may be the basis of observed stress tolerance in the salt-tolerant Pokkali.
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Affiliation(s)
- Nita Lakra
- Stress Physiology and Molecular Biology Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi, 110067, India
| | - Charanpreet Kaur
- Stress Physiology and Molecular Biology Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi, 110067, India
| | - Khalid Anwar
- Stress Physiology and Molecular Biology Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi, 110067, India
| | - Sneh Lata Singla-Pareek
- Plant Stress Biology, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Road, New Delhi, 110067, India
| | - Ashwani Pareek
- Stress Physiology and Molecular Biology Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi, 110067, India
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18
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Kim JA, Kim HS, Choi SH, Jang JY, Jeong MJ, Lee SI. The Importance of the Circadian Clock in Regulating Plant Metabolism. Int J Mol Sci 2017; 18:E2680. [PMID: 29232921 PMCID: PMC5751282 DOI: 10.3390/ijms18122680] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2017] [Revised: 12/07/2017] [Accepted: 12/08/2017] [Indexed: 11/16/2022] Open
Abstract
Carbohydrates are the primary energy source for plant development. Plants synthesize sucrose in source organs and transport them to sink organs during plant growth. This metabolism is sensitive to environmental changes in light quantity, quality, and photoperiod. In the daytime, the synthesis of sucrose and starch accumulates, and starch is degraded at nighttime. The circadian clock genes provide plants with information on the daily environmental changes and directly control many developmental processes, which are related to the path of primary metabolites throughout the life cycle. The circadian clock mechanism and processes of metabolism controlled by the circadian rhythm were studied in the model plant Arabidopsis and in the crops potato and rice. However, the translation of molecular mechanisms obtained from studies of model plants to crop plants is still difficult. Crop plants have specific organs such as edible seed and tuber that increase the size or accumulate valuable metabolites by harvestable metabolic components. Human consumers are interested in the regulation and promotion of these agriculturally significant crops. Circadian clock manipulation may suggest various strategies for the increased productivity of food crops through using environmental signal or overcoming environmental stress.
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Affiliation(s)
- Jin A Kim
- National Academy of Agricultural Science, Rural Development Administration, 370, Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do 560-500, Korea.
| | - Hyun-Soon Kim
- Plant System Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, 125 Gwahak-ro, Yuseong-gu, Daejeon 34141, Korea.
| | - Seo-Hwa Choi
- National Academy of Agricultural Science, Rural Development Administration, 370, Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do 560-500, Korea.
| | - Ji-Young Jang
- Plant System Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, 125 Gwahak-ro, Yuseong-gu, Daejeon 34141, Korea.
| | - Mi-Jeong Jeong
- National Academy of Agricultural Science, Rural Development Administration, 370, Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do 560-500, Korea.
| | - Soo In Lee
- National Academy of Agricultural Science, Rural Development Administration, 370, Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do 560-500, Korea.
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19
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Annunziata MG, Apelt F, Carillo P, Krause U, Feil R, Mengin V, Lauxmann MA, Köhl K, Nikoloski Z, Stitt M, Lunn JE. Getting back to nature: a reality check for experiments in controlled environments. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:4463-4477. [PMID: 28673035 PMCID: PMC5853417 DOI: 10.1093/jxb/erx220] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2017] [Accepted: 06/15/2017] [Indexed: 05/07/2023]
Abstract
Irradiance from sunlight changes in a sinusoidal manner during the day, with irregular fluctuations due to clouds, and light-dark shifts at dawn and dusk are gradual. Experiments in controlled environments typically expose plants to constant irradiance during the day and abrupt light-dark transitions. To compare the effects on metabolism of sunlight versus artificial light regimes, Arabidopsis thaliana plants were grown in a naturally illuminated greenhouse around the vernal equinox, and in controlled environment chambers with a 12-h photoperiod and either constant or sinusoidal light profiles, using either white fluorescent tubes or light-emitting diodes (LEDs) tuned to a sunlight-like spectrum as the light source. Rosettes were sampled throughout a 24-h diurnal cycle for metabolite analysis. The diurnal metabolite profiles revealed that carbon and nitrogen metabolism differed significantly between sunlight and artificial light conditions. The variability of sunlight within and between days could be a factor underlying these differences. Pairwise comparisons of the artificial light sources (fluorescent versus LED) or the light profiles (constant versus sinusoidal) showed much smaller differences. The data indicate that energy-efficient LED lighting is an acceptable alternative to fluorescent lights, but results obtained from plants grown with either type of artificial lighting might not be representative of natural conditions.
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Affiliation(s)
| | - Federico Apelt
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Petronia Carillo
- University of Campania “Luigi Vanvitelli”, Via Vivaldi, Caserta, Italy
| | - Ursula Krause
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Regina Feil
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Virginie Mengin
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Martin A Lauxmann
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Karin Köhl
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Zoran Nikoloski
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
- University of Potsdam, Karl-Liebknecht-Str., Potsdam, Germany
| | - Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - John E Lunn
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
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20
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Lauxmann MA, Annunziata MG, Brunoud G, Wahl V, Koczut A, Burgos A, Olas JJ, Maximova E, Abel C, Schlereth A, Soja AM, Bläsing OE, Lunn JE, Vernoux T, Stitt M. Reproductive failure in Arabidopsis thaliana under transient carbohydrate limitation: flowers and very young siliques are jettisoned and the meristem is maintained to allow successful resumption of reproductive growth. PLANT, CELL & ENVIRONMENT 2016; 39:745-67. [PMID: 26351840 DOI: 10.1111/pce.12634] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2015] [Revised: 08/21/2015] [Accepted: 08/24/2015] [Indexed: 05/21/2023]
Abstract
The impact of transient carbon depletion on reproductive growth in Arabidopsis was investigated by transferring long-photoperiod-grown plants to continuous darkness and returning them to a light-dark cycle. After 2 days of darkness, carbon reserves were depleted in reproductive sinks, and RNA in situ hybridization of marker transcripts showed that carbon starvation responses had been initiated in the meristem, anthers and ovules. Dark treatments of 2 or more days resulted in a bare-segment phenotype on the floral stem, with 23-27 aborted siliques. These resulted from impaired growth of immature siliques and abortion of mature and immature flowers. Depolarization of PIN1 protein and increased DII-VENUS expression pointed to rapid collapse of auxin gradients in the meristem and inhibition of primordia initiation. After transfer back to a light-dark cycle, flowers appeared and formed viable siliques and seeds. A similar phenotype was seen after transfer to sub-compensation point irradiance or CO2 . It also appeared in a milder form after a moderate decrease in irradiance and developed spontaneously in short photoperiods. We conclude that Arabidopsis inhibits primordia initiation and aborts flowers and very young siliques in C-limited conditions. This curtails demand, safeguarding meristem function and allowing renewal of reproductive growth when carbon becomes available again.
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Affiliation(s)
- Martin A Lauxmann
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Maria G Annunziata
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Géraldine Brunoud
- Laboratoire de Reproduction et Développement des Plantes, CNRS, INRA, ENS Lyon, UCBL, Université de Lyon, Lyon, 69364, France
| | - Vanessa Wahl
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Andrzej Koczut
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Asdrubal Burgos
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Justyna J Olas
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Eugenia Maximova
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Christin Abel
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Armin Schlereth
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Aleksandra M Soja
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Oliver E Bläsing
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
- Metanomics GmbH, Tegeler Weg 33, Berlin, 10589, Germany
| | - John E Lunn
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Teva Vernoux
- Laboratoire de Reproduction et Développement des Plantes, CNRS, INRA, ENS Lyon, UCBL, Université de Lyon, Lyon, 69364, France
| | - Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
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21
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Aspinwall MJ, Loik ME, Resco de Dios V, Tjoelker MG, Payton PR, Tissue DT. Utilizing intraspecific variation in phenotypic plasticity to bolster agricultural and forest productivity under climate change. PLANT, CELL & ENVIRONMENT 2015; 38:1752-64. [PMID: 25132508 DOI: 10.1111/pce.12424] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2014] [Revised: 07/21/2014] [Accepted: 07/28/2014] [Indexed: 05/15/2023]
Abstract
Climate change threatens the ability of agriculture and forestry to meet growing global demands for food, fibre and wood products. Information gathered from genotype-by-environment interactions (G × E), which demonstrate intraspecific variation in phenotypic plasticity (the ability of a genotype to alter its phenotype in response to environmental change), may prove important for bolstering agricultural and forest productivity under climate change. Nonetheless, very few studies have explicitly quantified genotype plasticity-productivity relationships in agriculture or forestry. Here, we conceptualize the importance of intraspecific variation in agricultural and forest species plasticity, and discuss the physiological and genetic factors contributing to intraspecific variation in phenotypic plasticity. Our discussion highlights the need for an integrated understanding of the mechanisms of G × E, more extensive assessments of genotypic responses to climate change under field conditions, and explicit testing of genotype plasticity-productivity relationships. Ultimately, further investigation of intraspecific variation in phenotypic plasticity in agriculture and forestry may prove important for identifying genotypes capable of increasing or sustaining productivity under more extreme climatic conditions.
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Affiliation(s)
- Michael J Aspinwall
- Hawkesbury Institute for the Environment, University of Western Sydney, Penrith, New South Wales, 2751, Australia
| | - Michael E Loik
- Department of Environmental Studies, University of California - Santa Cruz, Santa Cruz, CA, 95064, USA
| | - Victor Resco de Dios
- Hawkesbury Institute for the Environment, University of Western Sydney, Penrith, New South Wales, 2751, Australia
- Department of Crop and Forest Sciences - AGROTECNIO Center, Universitat de Lleida, Lleida, E25198, Spain
| | - Mark G Tjoelker
- Hawkesbury Institute for the Environment, University of Western Sydney, Penrith, New South Wales, 2751, Australia
| | - Paxton R Payton
- USDA-ARS Cropping Systems Research Laboratory, Lubbock, TX, 74915, USA
| | - David T Tissue
- Hawkesbury Institute for the Environment, University of Western Sydney, Penrith, New South Wales, 2751, Australia
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22
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Webb AAR, Satake A. Understanding circadian regulation of carbohydrate metabolism in Arabidopsis using mathematical models. PLANT & CELL PHYSIOLOGY 2015; 56:586-93. [PMID: 25745029 DOI: 10.1093/pcp/pcv033] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2014] [Accepted: 02/23/2015] [Indexed: 05/28/2023]
Abstract
C3 plants assimilate carbon by photosynthesis only during the day, but carbon resources are also required for growth and maintenance at night. To avoid carbon starvation, many plants store a part of photosynthetic carbon in starch during the day, and degrade it to supply sugars for growth at night. In Arabidopsis, starch accumulation in the day and degradation at night occur almost linearly, with the shape of this diel starch profile adaptively changing to allow continuous supply of sugar even in long-night conditions. The anticipation of dawn required to ensure linear consumption of starch to almost zero at dawn presumably requires the circadian clock. We review the links between carbon metabolism and the circadian clock, and mathematical models aimed at explaining the diel starch profile. These models can be considered in two classes, those that assume the level of available starch is sensed and the system ensures linearity of starch availability, and those in which sugar sensing is assumed, yielding linearity of starch availability as an emergent property of sucrose homeostasis. In the second class of model the feedback from starch metabolism to the circadian clock is considered to be essential for adaptive response to diverse photoperiods, consistent with recent empirical data demonstrating entrainment of the circadian clock by photosynthesis. Knowledge concerning the mechanisms regulating the dynamics of starch metabolism and sugar homeostasis in plants is required to develop new theories about the limitations of growth and biomass accumulation.
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Affiliation(s)
- Alex A R Webb
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA UK
| | - Akiko Satake
- Faculty of Earth Environmental Science, Hokkaido University N10W5, Kita-ku, Sapporo, Hokkaido, 060-0810 Japan
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23
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Park HC, Lee S, Park B, Choi W, Kim C, Lee S, Chung WS, Lee SY, Sabir J, Bressan RA, Bohnert HJ, Mengiste T, Yun DJ. Pathogen associated molecular pattern (PAMP)-triggered immunity is compromised under C-limited growth. Mol Cells 2015; 38:40-50. [PMID: 25387755 PMCID: PMC4314131 DOI: 10.14348/molcells.2015.2165] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2013] [Revised: 09/24/2013] [Accepted: 10/14/2014] [Indexed: 11/27/2022] Open
Abstract
In the interaction between plants and pathogens, carbon (C) resources provide energy and C skeletons to maintain, among many functions, the plant immune system. However, variations in C availability on pathogen associated molecular pattern (PAMP) triggered immunity (PTI) have not been systematically examined. Here, three types of starch mutants with enhanced susceptibility to Pseudomonas syringae pv. tomato DC3000 hrcC were examined for PTI. In a dark period-dependent manner, the mutants showed compromised induction of a PTI marker, and callose accumulation in response to the bacterial PAMP flagellin, flg22. In combination with weakened PTI responses in wild type by inhibition of the TCA cycle, the experiments determined the necessity of C-derived energy in establishing PTI. Global gene expression analyses identified flg22 responsive genes displaying C supply-dependent patterns. Nutrient recycling-related genes were regulated similarly by C-limitation and flg22, indicating re-arrangements of expression programs to redirect resources that establish or strengthen PTI. Ethylene and NAC transcription factors appear to play roles in these processes. Under C-limitation, PTI appears compromised based on suppression of genes required for continued biosynthetic capacity and defenses through flg22. Our results provide a foundation for the intuitive perception of the interplay between plant nutrition status and pathogen defense.
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Affiliation(s)
- Hyeong Cheol Park
- Division of Applied Life Science (BK21 Plus Program) and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701,
Korea
- Bureau of Ecological Conservation Reseach, National Institute of Ecology, Seocheon 325-813,
Korea
| | - Shinyoung Lee
- Division of Applied Life Science (BK21 Plus Program) and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701,
Korea
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907,
USA
| | - Bokyung Park
- Division of Applied Life Science (BK21 Plus Program) and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701,
Korea
| | - Wonkyun Choi
- Division of Applied Life Science (BK21 Plus Program) and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701,
Korea
- Bureau of Ecological Conservation Reseach, National Institute of Ecology, Seocheon 325-813,
Korea
| | - Chanmin Kim
- Division of Applied Life Science (BK21 Plus Program) and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701,
Korea
| | - Sanghun Lee
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907,
USA
| | - Woo Sik Chung
- Division of Applied Life Science (BK21 Plus Program) and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701,
Korea
| | - Sang Yeol Lee
- Division of Applied Life Science (BK21 Plus Program) and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701,
Korea
| | - Jamal Sabir
- College of Science, King Abdulaziz University, Jeddah 21589,
Kingdom of Saudi Arabia
| | - Ray A. Bressan
- Division of Applied Life Science (BK21 Plus Program) and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701,
Korea
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907,
USA
- College of Science, King Abdulaziz University, Jeddah 21589,
Kingdom of Saudi Arabia
| | - Hans J. Bohnert
- Division of Applied Life Science (BK21 Plus Program) and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701,
Korea
- College of Science, King Abdulaziz University, Jeddah 21589,
Kingdom of Saudi Arabia
- Departments of Plant Biology and of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801,
USA
| | - Tesfaye Mengiste
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907,
USA
| | - Dae-Jin Yun
- Division of Applied Life Science (BK21 Plus Program) and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701,
Korea
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24
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Lunn JE, Delorge I, Figueroa CM, Van Dijck P, Stitt M. Trehalose metabolism in plants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2014; 79:544-67. [PMID: 24645920 DOI: 10.1111/tpj.12509] [Citation(s) in RCA: 296] [Impact Index Per Article: 29.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2014] [Revised: 02/18/2014] [Accepted: 03/03/2014] [Indexed: 05/18/2023]
Abstract
Trehalose is a quantitatively important compatible solute and stress protectant in many organisms, including green algae and primitive plants. These functions have largely been replaced by sucrose in vascular plants, and trehalose metabolism has taken on new roles. Trehalose is a potential signal metabolite in plant interactions with pathogenic or symbiotic micro-organisms and herbivorous insects. It is also implicated in responses to cold and salinity, and in regulation of stomatal conductance and water-use efficiency. In plants, as in other eukaryotes and many prokaryotes, trehalose is synthesized via a phosphorylated intermediate, trehalose 6-phosphate (Tre6P). A meta-analysis revealed that the levels of Tre6P change in parallel with sucrose, which is the major product of photosynthesis and the main transport sugar in plants. We propose the existence of a bi-directional network, in which Tre6P is a signal of sucrose availability and acts to maintain sucrose concentrations within an appropriate range. Tre6P influences the relative amounts of sucrose and starch that accumulate in leaves during the day, and regulates the rate of starch degradation at night to match the demand for sucrose. Mutants in Tre6P metabolism have highly pleiotropic phenotypes, showing defects in embryogenesis, leaf growth, flowering, inflorescence branching and seed set. It has been proposed that Tre6P influences plant growth and development via inhibition of the SNF1-related protein kinase (SnRK1). However, current models conflict with some experimental data, and do not completely explain the pleiotropic phenotypes exhibited by mutants in Tre6P metabolism. Additional explanations for the diverse effects of alterations in Tre6P metabolism are discussed.
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Affiliation(s)
- John Edward Lunn
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
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25
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Kunz S, Pesquet E, Kleczkowski LA. Functional dissection of sugar signals affecting gene expression in Arabidopsis thaliana. PLoS One 2014; 9:e100312. [PMID: 24950222 PMCID: PMC4065033 DOI: 10.1371/journal.pone.0100312] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2014] [Accepted: 05/26/2014] [Indexed: 11/19/2022] Open
Abstract
BACKGROUND Sugars modulate expression of hundreds of genes in plants. Previous studies on sugar signaling, using intact plants or plant tissues, were hampered by tissue heterogeneity, uneven sugar transport and/or inter-conversions of the applied sugars. This, in turn, could obscure the identity of a specific sugar that acts as a signal affecting expression of given gene in a given tissue or cell-type. METHODOLOGY/PRINCIPAL FINDINGS To bypass those biases, we have developed a novel biological system, based on stem-cell-like Arabidopsis suspension culture. The cells were grown in a hormone-free medium and were sustained on xylose as the only carbon source. Using functional genomics we have identified 290 sugar responsive genes, responding rapidly (within 1 h) and specifically to low concentration (1 mM) of glucose, fructose and/or sucrose. For selected genes, the true nature of the signaling sugar molecules and sites of sugar perception were further clarified using non-metabolizable sugar analogues. Using both transgenic and wild-type A. thaliana seedlings, it was shown that the expression of selected sugar-responsive genes was not restricted to a specific tissue or cell type and responded to photoperiod-related changes in sugar availability. This suggested that sugar-responsiveness of genes identified in the cell culture system was not biased toward heterotrophic background and resembled that in whole plants. CONCLUSIONS Altogether, our research strategy, using a combination of cell culture and whole plants, has provided an unequivocal evidence for the identity of sugar-responsive genes and the identity of the sugar signaling molecules, independently from their inter-conversions or use for energy metabolism.
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Affiliation(s)
- Sabine Kunz
- Department of Plant Physiology, Umeå Plant Science Centre, Umeå University, Umeå, Sweden
| | - Edouard Pesquet
- Department of Plant Physiology, Umeå Plant Science Centre, Umeå University, Umeå, Sweden
| | - Leszek A. Kleczkowski
- Department of Plant Physiology, Umeå Plant Science Centre, Umeå University, Umeå, Sweden
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26
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Sulpice R, Flis A, Ivakov AA, Apelt F, Krohn N, Encke B, Abel C, Feil R, Lunn JE, Stitt M. Arabidopsis coordinates the diurnal regulation of carbon allocation and growth across a wide range of photoperiods. MOLECULAR PLANT 2014; 7:137-55. [PMID: 24121291 DOI: 10.1093/mp/sst127] [Citation(s) in RCA: 161] [Impact Index Per Article: 16.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
In short photoperiods, plants accumulate starch more rapidly in the light and degrade it more slowly at night, ensuring that their starch reserves last until dawn. To investigate the accompanying changes in the timing of growth, Arabidopsis was grown in a range of photoperiods and analyzed for rosette biomass, photosynthesis, respiration, ribosome abundance, polysome loading, starch, and over 40 metabolites at dawn and dusk. The data set was used to model growth rates in the daytime and night, and to identify metabolites that correlate with growth. Modeled growth rates and polysome loading were high in the daytime and at night in long photoperiods, but decreased at night in short photoperiods. Ribosome abundance was similar in all photoperiods. It is discussed how the amount of starch accumulated in the light period, the length of the night, and maintenance costs interact to constrain growth at night in short photoperiods, and alter the strategy for optimizing ribosome use. Significant correlations were found in the daytime and the night between growth rates and the levels of the sugar-signal trehalose 6-phosphate and the amino acid biosynthesis intermediate shikimate, identifying these metabolites as hubs in a network that coordinates growth with diurnal changes in the carbon supply.
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Affiliation(s)
- Ronan Sulpice
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, 14476 Potsdam-Golm, Germany
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27
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Martins MCM, Hejazi M, Fettke J, Steup M, Feil R, Krause U, Arrivault S, Vosloh D, Figueroa CM, Ivakov A, Yadav UP, Piques M, Metzner D, Stitt M, Lunn JE. Feedback inhibition of starch degradation in Arabidopsis leaves mediated by trehalose 6-phosphate. PLANT PHYSIOLOGY 2013; 163:1142-63. [PMID: 24043444 PMCID: PMC3813640 DOI: 10.1104/pp.113.226787] [Citation(s) in RCA: 128] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2013] [Accepted: 09/16/2013] [Indexed: 05/18/2023]
Abstract
Many plants accumulate substantial starch reserves in their leaves during the day and remobilize them at night to provide carbon and energy for maintenance and growth. In this paper, we explore the role of a sugar-signaling metabolite, trehalose-6-phosphate (Tre6P), in regulating the accumulation and turnover of transitory starch in Arabidopsis (Arabidopsis thaliana) leaves. Ethanol-induced overexpression of trehalose-phosphate synthase during the day increased Tre6P levels up to 11-fold. There was a transient increase in the rate of starch accumulation in the middle of the day, but this was not linked to reductive activation of ADP-glucose pyrophosphorylase. A 2- to 3-fold increase in Tre6P during the night led to significant inhibition of starch degradation. Maltose and maltotriose did not accumulate, suggesting that Tre6P affects an early step in the pathway of starch degradation in the chloroplasts. Starch granules isolated from induced plants had a higher orthophosphate content than granules from noninduced control plants, consistent either with disruption of the phosphorylation-dephosphorylation cycle that is essential for efficient starch breakdown or with inhibition of starch hydrolysis by β-amylase. Nonaqueous fractionation of leaves showed that Tre6P is predominantly located in the cytosol, with estimated in vivo Tre6P concentrations of 4 to 7 µm in the cytosol, 0.2 to 0.5 µm in the chloroplasts, and 0.05 µm in the vacuole. It is proposed that Tre6P is a component in a signaling pathway that mediates the feedback regulation of starch breakdown by sucrose, potentially linking starch turnover to demand for sucrose by growing sink organs at night.
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Affiliation(s)
| | - Mahdi Hejazi
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam-Golm, Germany (M.C.M.M., R.F., U.K., S.A., D.V., C.M.F., A.I., U.P.Y., M.P., D.M., M.Sti., J.E.L.); and
- Institute of Biochemistry and Biology, Department of Plant Physiology, University of Potsdam, 14476 Potsdam-Golm, Germany (M.H., J.F., M.Ste.)
| | - Joerg Fettke
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam-Golm, Germany (M.C.M.M., R.F., U.K., S.A., D.V., C.M.F., A.I., U.P.Y., M.P., D.M., M.Sti., J.E.L.); and
- Institute of Biochemistry and Biology, Department of Plant Physiology, University of Potsdam, 14476 Potsdam-Golm, Germany (M.H., J.F., M.Ste.)
| | - Martin Steup
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam-Golm, Germany (M.C.M.M., R.F., U.K., S.A., D.V., C.M.F., A.I., U.P.Y., M.P., D.M., M.Sti., J.E.L.); and
- Institute of Biochemistry and Biology, Department of Plant Physiology, University of Potsdam, 14476 Potsdam-Golm, Germany (M.H., J.F., M.Ste.)
| | - Regina Feil
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam-Golm, Germany (M.C.M.M., R.F., U.K., S.A., D.V., C.M.F., A.I., U.P.Y., M.P., D.M., M.Sti., J.E.L.); and
- Institute of Biochemistry and Biology, Department of Plant Physiology, University of Potsdam, 14476 Potsdam-Golm, Germany (M.H., J.F., M.Ste.)
| | - Ursula Krause
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam-Golm, Germany (M.C.M.M., R.F., U.K., S.A., D.V., C.M.F., A.I., U.P.Y., M.P., D.M., M.Sti., J.E.L.); and
- Institute of Biochemistry and Biology, Department of Plant Physiology, University of Potsdam, 14476 Potsdam-Golm, Germany (M.H., J.F., M.Ste.)
| | - Stéphanie Arrivault
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam-Golm, Germany (M.C.M.M., R.F., U.K., S.A., D.V., C.M.F., A.I., U.P.Y., M.P., D.M., M.Sti., J.E.L.); and
- Institute of Biochemistry and Biology, Department of Plant Physiology, University of Potsdam, 14476 Potsdam-Golm, Germany (M.H., J.F., M.Ste.)
| | | | - Carlos María Figueroa
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam-Golm, Germany (M.C.M.M., R.F., U.K., S.A., D.V., C.M.F., A.I., U.P.Y., M.P., D.M., M.Sti., J.E.L.); and
- Institute of Biochemistry and Biology, Department of Plant Physiology, University of Potsdam, 14476 Potsdam-Golm, Germany (M.H., J.F., M.Ste.)
| | - Alexander Ivakov
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam-Golm, Germany (M.C.M.M., R.F., U.K., S.A., D.V., C.M.F., A.I., U.P.Y., M.P., D.M., M.Sti., J.E.L.); and
- Institute of Biochemistry and Biology, Department of Plant Physiology, University of Potsdam, 14476 Potsdam-Golm, Germany (M.H., J.F., M.Ste.)
| | | | - Maria Piques
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam-Golm, Germany (M.C.M.M., R.F., U.K., S.A., D.V., C.M.F., A.I., U.P.Y., M.P., D.M., M.Sti., J.E.L.); and
- Institute of Biochemistry and Biology, Department of Plant Physiology, University of Potsdam, 14476 Potsdam-Golm, Germany (M.H., J.F., M.Ste.)
| | - Daniela Metzner
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam-Golm, Germany (M.C.M.M., R.F., U.K., S.A., D.V., C.M.F., A.I., U.P.Y., M.P., D.M., M.Sti., J.E.L.); and
- Institute of Biochemistry and Biology, Department of Plant Physiology, University of Potsdam, 14476 Potsdam-Golm, Germany (M.H., J.F., M.Ste.)
| | - Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, 14476 Potsdam-Golm, Germany (M.C.M.M., R.F., U.K., S.A., D.V., C.M.F., A.I., U.P.Y., M.P., D.M., M.Sti., J.E.L.); and
- Institute of Biochemistry and Biology, Department of Plant Physiology, University of Potsdam, 14476 Potsdam-Golm, Germany (M.H., J.F., M.Ste.)
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28
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Poiroux-Gonord F, Fanciullino AL, Poggi I, Urban L. Carbohydrate control over carotenoid build-up is conditional on fruit ontogeny in clementine fruits. PHYSIOLOGIA PLANTARUM 2013; 147:417-31. [PMID: 22882610 DOI: 10.1111/j.1399-3054.2012.01672.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2012] [Revised: 05/18/2012] [Indexed: 05/21/2023]
Abstract
The final contents of primary and secondary metabolites of the ripe fruit depend on metabolic processes that are tightly regulated during fruit ontogeny. Carbohydrate supply during fruit development is known to influence these processes but, with respect to secondary metabolites, we do not really know whether this influence is direct or indirect. Here, we hypothesized that the sensitivity of clementine fruit metabolism to carbohydrate supply was conditional on fruit developmental stage. We applied treatments increasing fruit load reversibly or irreversibly at three key stages of clementine (Citrus clementina Hort. ex Tan.) fruit development: early after cell division, at the onset of fruit coloration (color break) and near maturity. The highest fruit load obtained by early defoliation (irreversible) had the highest impact on fruit growth, maturity and metabolism, followed by the highest fruit load obtained by early shading (reversible). Final fruit size decreased by 21 and 18% in these early irreversible and reversible treatments, respectively. Soluble sugars decreased by 18% in the early irreversible treatment, whereas organic acids increased by 46 and 29% in these early irreversible and reversible treatments, respectively. Interestingly, total carotenoids increased by 50 and 18%, respectively. Changes in leaf starch content and photosynthesis supported that these early treatments triggered a carbon starvation in the young fruits, with irreversible effects. Furthermore, our observations on the early treatments challenge the common view that carbohydrate supply influences positively carotenoid accumulation in fruits. We propose that early carbon starvation irreversibly promotes carotenoid accumulation.
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Affiliation(s)
- Florine Poiroux-Gonord
- INRA, UR 1103 Génétique et Ecophysiologie de la Qualité des Agrumes, San Giuliano, France
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29
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O'Hara LE, Paul MJ, Wingler A. How do sugars regulate plant growth and development? New insight into the role of trehalose-6-phosphate. MOLECULAR PLANT 2013; 6:261-74. [PMID: 23100484 DOI: 10.1093/mp/sss120] [Citation(s) in RCA: 155] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Plant growth and development are tightly controlled in response to environmental conditions that influence the availability of photosynthetic carbon in the form of sucrose. Trehalose-6-phosphate (T6P), the precursor of trehalose in the biosynthetic pathway, is an important signaling metabolite that is involved in the regulation of plant growth and development in response to carbon availability. In addition to the plant's own pathway for trehalose synthesis, formation of T6P or trehalose by pathogens can result in the reprogramming of plant metabolism and development. Developmental processes that are regulated by T6P range from embryo development to leaf senescence. Some of these processes are regulated in interaction with phytohormones, such as auxin. A key interacting factor of T6P signaling in response to the environment is the protein kinase sucrose non-fermenting related kinase-1 (SnRK1), whose catalytic activity is inhibited by T6P. SnRK1 is most likely involved in the adjustment of metabolism and growth in response to starvation. The transcription factor bZIP11 has recently been identified as a new player in the T6P/SnRK1 regulatory pathway. By inhibiting SnRK1, T6P promotes biosynthetic reactions. This regulation has important consequences for crop production, for example, in the developing wheat grain and during the growth of potato tubers.
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Affiliation(s)
- Liam E O'Hara
- Genetics, Evolution and Environment, University College London, Gower Street, London, WC1E 6BT, UK
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30
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Kjaer KH, Poir R, Ottosen CO, Walter A. Rapid adjustment in chrysanthemum carbohydrate turnover and growth activity to a change in time-of-day application of light and daylength. FUNCTIONAL PLANT BIOLOGY : FPB 2012; 39:639-649. [PMID: 32480815 DOI: 10.1071/fp11289] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2011] [Accepted: 06/27/2012] [Indexed: 06/11/2023]
Abstract
Diel (24h) rhythms are believed to be of great importance to plant growth and carbohydrate metabolism in fluctuating environments. However, it is unclear how plants that have evolved to experience regular day-night patterns will respond to irregular light environments that disturb diurnally-regulated parameters related to growth. In this study, chrysanthemum plants were exposed to a change in the time-of-day application of light followed by short days or long days with a night interruption of light. We observed a clear shift in the diel cycle of sucrose turnover and relative leaf expansion, indicating a resetting of these activities with a temporal trigger in the early morning. The starch pool was relatively stable in long-day plants and marginally affected by the change in the time-of-day application in light followed by long days with a night interruption. This was in contrast with an onset of a daily starch turnover by a shift to short days. These results confirm findings from model species on the complex relationship between carbohydrate metabolism, source-sink relations and growth rate and they shed new light on the dynamic processes during acclimation towards altered environmental responses of plants in fluctuating environments.
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Affiliation(s)
- Katrine Heinsvig Kjaer
- Department of Food Science, Aarhus University, Kirstinebjergvej 10, 5792 Aarslev, Denmark
| | - Richard Poir
- IBG-2 (Plant Sciences), Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Carl-Otto Ottosen
- Department of Food Science, Aarhus University, Kirstinebjergvej 10, 5792 Aarslev, Denmark
| | - Achim Walter
- IBG-2 (Plant Sciences), Forschungszentrum Jülich, 52425 Jülich, Germany
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Romano JM, Dubos C, Prouse MB, Wilkins O, Hong H, Poole M, Kang KY, Li E, Douglas CJ, Western TL, Mansfield SD, Campbell MM. AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network. THE NEW PHYTOLOGIST 2012; 195:774-786. [PMID: 22708996 DOI: 10.1111/j.1469-8137.2012.04201.x] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Throughout their lifetimes, plants must coordinate the regulation of various facets of growth and development. Previous evidence has suggested that the Arabidopsis thaliana R2R3-MYB, AtMYB61, might function as a coordinate regulator of multiple aspects of plant resource allocation. Using a combination of cell biology, transcriptome analysis and biochemistry, in conjunction with gain-of-function and loss-of-function genetics, the role of AtMYB61 in conditioning resource allocation throughout the plant life cycle was explored. In keeping with its role as a regulator of resource allocation, AtMYB61 is expressed in sink tissues, notably xylem, roots and developing seeds. Loss of AtMYB61 function decreases xylem formation, induces qualitative changes in xylem cell structure and decreases lateral root formation; in contrast, gain of AtMYB61 function has the opposite effect on these traits. AtMYB61 coordinates a small network of downstream target genes, which contain a motif in their upstream regulatory regions that is bound by AtMYB61, and AtMYB61 activates transcription from this same motif. Loss-of-function analysis supports the hypothesis that AtMYB61 targets play roles in shaping subsets of AtMYB61-related phenotypes. Taken together, these findings suggest that AtMYB61 links the transcriptional control of multiple aspects of plant resource allocation.
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Affiliation(s)
- Julia M Romano
- Department of Cell & Systems Biology, University of Toronto, 25 Willcocks St., Toronto, ON, Canada, M5S 3B2
- Centre for the Analysis of Genome Evolution and Function, University of Toronto, 25 Willcocks St., Toronto, ON, Canada, M5S 3B2
| | - Christian Dubos
- Department of Cell & Systems Biology, University of Toronto, 25 Willcocks St., Toronto, ON, Canada, M5S 3B2
- INRA, UMR1318, Institut Jean-Pierre Bourgin, RD10, F-78026, Versailles, France
- AgroParisTech, Institut Jean-Pierre Bourgin, RD10, F-78026, Versailles, France
| | - Michael B Prouse
- Department of Cell & Systems Biology, University of Toronto, 25 Willcocks St., Toronto, ON, Canada, M5S 3B2
- Centre for the Analysis of Genome Evolution and Function, University of Toronto, 25 Willcocks St., Toronto, ON, Canada, M5S 3B2
| | - Olivia Wilkins
- Department of Cell & Systems Biology, University of Toronto, 25 Willcocks St., Toronto, ON, Canada, M5S 3B2
- Centre for the Analysis of Genome Evolution and Function, University of Toronto, 25 Willcocks St., Toronto, ON, Canada, M5S 3B2
- Center for Genomics and Systems Biology, New York University,12 Waverly Place, New York, NY10003, USA
| | - Henry Hong
- Department of Cell & Systems Biology, University of Toronto, 25 Willcocks St., Toronto, ON, Canada, M5S 3B2
| | - Mervin Poole
- Campden BRI, Station Road, Chipping Campden, Gloucestershire GL55 6LD, UK
| | - Kyu-Young Kang
- Department of Wood Science, University of British Columbia, 4030-2424 Main Mall, Vancouver, BC, Canada, V6T 1Z4
- Department of Biological and Environmental Science, Dongguk University-Seoul, 26 Pil-dong 3-ga, Jung-gu, Seoul, 100715, South Korea
| | - Eryang Li
- Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC, Canada, V6T 1Z4
| | - Carl J Douglas
- Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC, Canada, V6T 1Z4
| | - Tamara L Western
- Department of Biology, McGill University, 1205 ave. Docteur Penfield, Montreal, QC, Canada, H3A 1B1
| | - Shawn D Mansfield
- Department of Wood Science, University of British Columbia, 4030-2424 Main Mall, Vancouver, BC, Canada, V6T 1Z4
| | - Malcolm M Campbell
- Department of Cell & Systems Biology, University of Toronto, 25 Willcocks St., Toronto, ON, Canada, M5S 3B2
- Centre for the Analysis of Genome Evolution and Function, University of Toronto, 25 Willcocks St., Toronto, ON, Canada, M5S 3B2
- Department of Biological Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, ON, Canada, M1C 1A4
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Rebolledo MC, Dingkuhn M, Clément-Vidal A, Rouan L, Luquet D. Phenomics of rice early vigour and drought response: Are sugar related and morphogenetic traits relevant? RICE (NEW YORK, N.Y.) 2012; 5:22. [PMID: 24279832 PMCID: PMC4883731 DOI: 10.1186/1939-8433-5-22] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2011] [Accepted: 05/10/2012] [Indexed: 05/04/2023]
Abstract
BACKGROUND Early vigour (biomass accumulation) is a useful but complex trait in rainfed rice (Oryza sativa L). Little is known on trade-offs with drought tolerance. This study explored the relevance of (sugar) metabolic and morphogenetic traits to describe the genetic diversity of rice early vigour and its phenotypic plasticity under drought conditions. A greenhouse experiment was conducted to characterize on a panel of 43 rice genotypes plant morphogenesis and sugar concentration in expanded (source) and expanding (sink) leaves. RESULTS Across genotypes in control treatment, leaf starch concentration was negatively correlated with organogenetic development rate (DR, defined as leaf appearance rate on main stem). Genotypes with small leaves had high DR and tiller number but low leaf starch concentration. Under drought, vigorous genotypes showed stronger growth reduction. Starch concentration decreased in source leaves, by contrast with soluble sugars and with that observed in sink leaves. Accordingly, genotypes were grouped in three clusters differing in constitutive vigour, starch storage and growth maintenance under drought showing a trade off between constitutive vigour and drought tolerance. CONCLUSIONS It was therefore suggested that non structural carbohydrates, particularly starch, were relevant markers of early vigour. Their relevance as markers of growth maintenance under drought needs to be further explored. Results are discussed regarding novel process based traits to be introduced in the GRiSP (Global Rice Science Partnership) phenotyping network.
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Affiliation(s)
- Maria-Camila Rebolledo
- />Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), UMR AGAP, F-34398 Montpellier, France
| | - Michael Dingkuhn
- />Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), UMR AGAP, F-34398 Montpellier, France
- />CESD Department, International Rice Research Institute, DAPO, Box 7777, Metro Manila, Philippines
| | - Anne Clément-Vidal
- />Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), UMR AGAP, F-34398 Montpellier, France
| | - Lauriane Rouan
- />Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), UMR AGAP, F-34398 Montpellier, France
| | - Delphine Luquet
- />Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), UMR AGAP, F-34398 Montpellier, France
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Obata T, Fernie AR. The use of metabolomics to dissect plant responses to abiotic stresses. Cell Mol Life Sci 2012; 69:3225-43. [PMID: 22885821 PMCID: PMC3437017 DOI: 10.1007/s00018-012-1091-5] [Citation(s) in RCA: 456] [Impact Index Per Article: 38.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2012] [Revised: 07/09/2012] [Accepted: 07/09/2012] [Indexed: 12/15/2022]
Abstract
Plant metabolism is perturbed by various abiotic stresses. As such the metabolic network of plants must be reconfigured under stress conditions in order to allow both the maintenance of metabolic homeostasis and the production of compounds that ameliorate the stress. The recent development and adoption of metabolomics and systems biology approaches enable us not only to gain a comprehensive overview, but also a detailed analysis of crucial components of the plant metabolic response to abiotic stresses. In this review we introduce the analytical methods used for plant metabolomics and describe their use in studies related to the metabolic response to water, temperature, light, nutrient limitation, ion and oxidative stresses. Both similarity and specificity of the metabolic responses against diverse abiotic stress are evaluated using data available in the literature. Classically discussed stress compounds such as proline, γ-amino butyrate and polyamines are reviewed, and the widespread importance of branched chain amino acid metabolism under stress condition is discussed. Finally, where possible, mechanistic insights into metabolic regulatory processes are discussed.
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Affiliation(s)
- Toshihiro Obata
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
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Park SH, Chung PJ, Juntawong P, Bailey-Serres J, Kim YS, Jung H, Bang SW, Kim YK, Do Choi Y, Kim JK. Posttranscriptional control of photosynthetic mRNA decay under stress conditions requires 3' and 5' untranslated regions and correlates with differential polysome association in rice. PLANT PHYSIOLOGY 2012; 159:1111-24. [PMID: 22566494 PMCID: PMC3387698 DOI: 10.1104/pp.112.194928] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2012] [Accepted: 05/02/2012] [Indexed: 05/18/2023]
Abstract
Abiotic stress, including drought, salinity, and temperature extremes, regulates gene expression at the transcriptional and posttranscriptional levels. Expression profiling of total messenger RNAs (mRNAs) from rice (Oryza sativa) leaves grown under stress conditions revealed that the transcript levels of photosynthetic genes are reduced more rapidly than others, a phenomenon referred to as stress-induced mRNA decay (SMD). By comparing RNA polymerase II engagement with the steady-state mRNA level, we show here that SMD is a posttranscriptional event. The SMD of photosynthetic genes was further verified by measuring the half-lives of the small subunit of Rubisco (RbcS1) and Chlorophyll a/b-Binding Protein1 (Cab1) mRNAs during stress conditions in the presence of the transcription inhibitor cordycepin. To discern any correlation between SMD and the process of translation, changes in total and polysome-associated mRNA levels after stress were measured. Total and polysome-associated mRNA levels of two photosynthetic (RbcS1 and Cab1) and two stress-inducible (Dehydration Stress-Inducible Protein1 and Salt-Induced Protein) genes were found to be markedly similar. This demonstrated the importance of polysome association for transcript stability under stress conditions. Microarray experiments performed on total and polysomal mRNAs indicate that approximately half of all mRNAs that undergo SMD remain polysome associated during stress treatments. To delineate the functional determinant(s) of mRNAs responsible for SMD, the RbcS1 and Cab1 transcripts were dissected into several components. The expressions of different combinations of the mRNA components were analyzed under stress conditions, revealing that both 3' and 5' untranslated regions are necessary for SMD. Our results, therefore, suggest that the posttranscriptional control of photosynthetic mRNA decay under stress conditions requires both 3' and 5' untranslated regions and correlates with differential polysome association.
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Affiliation(s)
- Su-Hyun Park
- School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449–728, Korea (S.-H.P., P.J.C., Y.S.K., H.J., S.W.B., J.-K.K.); Laboratory of Plant Molecular Biology, The Rockefeller University, New York, New York 10065 (P.J.C.); Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521 (P.J., J.B.-S.); GreenGene Biotech, Inc., Myongji University, Yongin 449–728, Korea (Y.-K.K.); and School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea (Y.D.C.)
| | - Pil Joong Chung
- School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449–728, Korea (S.-H.P., P.J.C., Y.S.K., H.J., S.W.B., J.-K.K.); Laboratory of Plant Molecular Biology, The Rockefeller University, New York, New York 10065 (P.J.C.); Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521 (P.J., J.B.-S.); GreenGene Biotech, Inc., Myongji University, Yongin 449–728, Korea (Y.-K.K.); and School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea (Y.D.C.)
| | - Piyada Juntawong
- School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449–728, Korea (S.-H.P., P.J.C., Y.S.K., H.J., S.W.B., J.-K.K.); Laboratory of Plant Molecular Biology, The Rockefeller University, New York, New York 10065 (P.J.C.); Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521 (P.J., J.B.-S.); GreenGene Biotech, Inc., Myongji University, Yongin 449–728, Korea (Y.-K.K.); and School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea (Y.D.C.)
| | - Julia Bailey-Serres
- School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449–728, Korea (S.-H.P., P.J.C., Y.S.K., H.J., S.W.B., J.-K.K.); Laboratory of Plant Molecular Biology, The Rockefeller University, New York, New York 10065 (P.J.C.); Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521 (P.J., J.B.-S.); GreenGene Biotech, Inc., Myongji University, Yongin 449–728, Korea (Y.-K.K.); and School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea (Y.D.C.)
| | - Youn Shic Kim
- School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449–728, Korea (S.-H.P., P.J.C., Y.S.K., H.J., S.W.B., J.-K.K.); Laboratory of Plant Molecular Biology, The Rockefeller University, New York, New York 10065 (P.J.C.); Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521 (P.J., J.B.-S.); GreenGene Biotech, Inc., Myongji University, Yongin 449–728, Korea (Y.-K.K.); and School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea (Y.D.C.)
| | - Harin Jung
- School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449–728, Korea (S.-H.P., P.J.C., Y.S.K., H.J., S.W.B., J.-K.K.); Laboratory of Plant Molecular Biology, The Rockefeller University, New York, New York 10065 (P.J.C.); Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521 (P.J., J.B.-S.); GreenGene Biotech, Inc., Myongji University, Yongin 449–728, Korea (Y.-K.K.); and School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea (Y.D.C.)
| | - Seung Woon Bang
- School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449–728, Korea (S.-H.P., P.J.C., Y.S.K., H.J., S.W.B., J.-K.K.); Laboratory of Plant Molecular Biology, The Rockefeller University, New York, New York 10065 (P.J.C.); Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521 (P.J., J.B.-S.); GreenGene Biotech, Inc., Myongji University, Yongin 449–728, Korea (Y.-K.K.); and School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea (Y.D.C.)
| | - Yeon-Ki Kim
- School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449–728, Korea (S.-H.P., P.J.C., Y.S.K., H.J., S.W.B., J.-K.K.); Laboratory of Plant Molecular Biology, The Rockefeller University, New York, New York 10065 (P.J.C.); Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521 (P.J., J.B.-S.); GreenGene Biotech, Inc., Myongji University, Yongin 449–728, Korea (Y.-K.K.); and School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea (Y.D.C.)
| | - Yang Do Choi
- School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449–728, Korea (S.-H.P., P.J.C., Y.S.K., H.J., S.W.B., J.-K.K.); Laboratory of Plant Molecular Biology, The Rockefeller University, New York, New York 10065 (P.J.C.); Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521 (P.J., J.B.-S.); GreenGene Biotech, Inc., Myongji University, Yongin 449–728, Korea (Y.-K.K.); and School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea (Y.D.C.)
| | - Ju-Kon Kim
- School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449–728, Korea (S.-H.P., P.J.C., Y.S.K., H.J., S.W.B., J.-K.K.); Laboratory of Plant Molecular Biology, The Rockefeller University, New York, New York 10065 (P.J.C.); Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521 (P.J., J.B.-S.); GreenGene Biotech, Inc., Myongji University, Yongin 449–728, Korea (Y.-K.K.); and School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea (Y.D.C.)
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Stitt M, Zeeman SC. Starch turnover: pathways, regulation and role in growth. CURRENT OPINION IN PLANT BIOLOGY 2012; 15:282-92. [PMID: 22541711 DOI: 10.1016/j.pbi.2012.03.016] [Citation(s) in RCA: 431] [Impact Index Per Article: 35.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2012] [Revised: 03/22/2012] [Accepted: 03/26/2012] [Indexed: 05/18/2023]
Abstract
Many plants store part of their photosynthate as starch during the day and remobilise it to support metabolism and growth at night. Mutants unable to synthesize or degrade starch show strongly impaired growth except in long day conditions. In rapidly growing plants, starch turnover is regulated such that it is almost, but not completely, exhausted at dawn. There is increasing evidence that premature or incomplete exhaustion of starch turnover results in lower rates of plant growth. This review provides an update on the pathways for starch synthesis and degradation. We discuss recent advances in understanding how starch turnover and the use of carbon for growth is regulated during diurnal cycles, with special emphasis on the role of the biological clock. Much of the molecular and genetic research on starch turnover has been performed in the reference system Arabidopsis. This review considers to what extent information gained in this weed species maybe applicable to annual crops and perennial species.
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Affiliation(s)
- Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, Potsdam-Golm, Germany.
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Hädrich N, Hendriks JHM, Kötting O, Arrivault S, Feil R, Zeeman SC, Gibon Y, Schulze WX, Stitt M, Lunn JE. Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2012; 70:231-42. [PMID: 22098298 DOI: 10.1111/j.1365-313x.2011.04860.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Many plants, including Arabidopsis thaliana, retain a substantial portion of their photosynthate in leaves in the form of starch, which is remobilized to support metabolism and growth at night. ADP-glucose pyrophosphorylase (AGPase) catalyses the first committed step in the pathway of starch synthesis, the production of ADP-glucose. The enzyme is redox-activated in the light and in response to sucrose accumulation, via reversible breakage of an intermolecular cysteine bridge between the two small (APS1) subunits. The biological function of this regulatory mechanism was investigated by complementing an aps1 null mutant (adg1) with a series of constructs containing a full-length APS1 gene encoding either the wild-type APS1 protein or mutated forms in which one of the five cysteine residues was replaced by serine. Substitution of Cys81 by serine prevented APS1 dimerization, whereas mutation of the other cysteines had no effect. Thus, Cys81 is both necessary and sufficient for dimerization of APS1. Compared to control plants, the adg1/APS1(C81S) lines had higher levels of ADP-glucose and maltose, and either increased rates of starch synthesis or a starch-excess phenotype, depending on the daylength. APS1 protein levels were five- to tenfold lower in adg1/APS1(C81S) lines than in control plants. These results show that redox modulation of AGPase contributes to the diurnal regulation of starch turnover, with inappropriate regulation of the enzyme having an unexpected impact on starch breakdown, and that Cys81 may play an important role in the regulation of AGPase turnover.
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Affiliation(s)
- Nadja Hädrich
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
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Crumpton-Taylor M, Grandison S, Png KM, Bushby AJ, Smith AM. Control of starch granule numbers in Arabidopsis chloroplasts. PLANT PHYSIOLOGY 2012; 158:905-16. [PMID: 22135430 PMCID: PMC3271777 DOI: 10.1104/pp.111.186957] [Citation(s) in RCA: 79] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2011] [Accepted: 11/23/2011] [Indexed: 05/19/2023]
Abstract
The aim of this work was to investigate starch granule numbers in Arabidopsis (Arabidopsis thaliana) leaves. Lack of quantitative information on the extent of genetic, temporal, developmental, and environmental variation in granule numbers is an important limitation in understanding control of starch degradation and the mechanism of granule initiation. Two methods were developed for reliable estimation of numbers of granules per chloroplast. First, direct measurements were made on large series of consecutive sections of mesophyll tissue obtained by focused ion beam-scanning electron microscopy. Second, average numbers were calculated from the starch contents of leaves and chloroplasts and estimates of granule mass based on granule dimensions. Examination of wild-type plants and accumulation and regulation of chloroplast (arc) mutants with few, large chloroplasts provided the following new insights. There is wide variation in chloroplast volumes in cells of wild-type leaves. Granule numbers per chloroplast are correlated with chloroplast volume, i.e. large chloroplasts have more granules than small chloroplasts. Mature leaves of wild-type plants and arc mutants have approximately the same number of granules per unit volume of stroma, regardless of the size and number of chloroplasts per cell. Granule numbers per unit volume of stroma are also relatively constant in immature leaves but are greater than in mature leaves. Granule initiation occurs as chloroplasts divide in immature leaves, but relatively little initiation occurs in mature leaves. Changes in leaf starch content over the diurnal cycle are largely brought about by changes in the volume of a fixed number of granules.
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Affiliation(s)
| | | | | | | | - Alison M. Smith
- Department of Metabolic Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom (M.C.-T., A.M.S.); School of Computing Sciences, University of East Anglia, Norwich NR4 7TJ, United Kingdom (S.G.); The Nanovision Centre, School of Engineering and Materials Science, Queen Mary University of London, London E1 4NS, United Kingdom (K.M.Y.P., A.J.B.)
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Schröder F, Lisso J, Müssig C. Expression pattern and putative function of EXL1 and homologous genes in Arabidopsis. PLANT SIGNALING & BEHAVIOR 2012; 7:22-7. [PMID: 22301961 PMCID: PMC3357360 DOI: 10.4161/psb.7.1.18369] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
The Arabidopsis EXORDIUM-LIKE1 (EXL1) gene (At1g35140) is required for adaptation to carbon (C)- and energy-limiting growth conditions. An exl1 loss of function mutant showed diminished biomass production in a low total irradiance growth regime, impaired survival during extended night, and impaired survival of anoxia stress. We show here additional expression data and discuss the putative roles of EXL1. We hypothesize that EXL1 suppresses brassinosteroid-dependent growth and controls C allocation in the cell. In-depth expression analysis of homologous genes suggests that the EXL2 (At5g64260) and EXL4 (At5g09440) genes play similar roles.
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Affiliation(s)
- Florian Schröder
- Universität Potsdam, Max Planck Institute of Molecular Plant Physiology, Department Lothar Willmitzer; Golm, Germany
| | - Janina Lisso
- Universität Potsdam, Max Planck Institute of Molecular Plant Physiology, Department Lothar Willmitzer; Golm, Germany
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Schröder F, Lisso J, Müssig C. EXORDIUM-LIKE1 promotes growth during low carbon availability in Arabidopsis. PLANT PHYSIOLOGY 2011; 156:1620-30. [PMID: 21543728 PMCID: PMC3135934 DOI: 10.1104/pp.111.177204] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2011] [Accepted: 05/01/2011] [Indexed: 05/18/2023]
Abstract
Little is known about genes that control growth and development under low carbon (C) availability. The Arabidopsis (Arabidopsis thaliana) EXORDIUM-LIKE1 (EXL1) gene (At1g35140) was identified as a brassinosteroid-regulated gene in a previous study. We show here that the EXL1 protein is required for adaptation to C- and energy-limiting growth conditions. In-depth analysis of EXL1 transcript levels under various environmental conditions indicated that EXL1 expression is controlled by the C and energy status. Sugar starvation, extended night, and anoxia stress induced EXL1 gene expression. The C status also determined EXL1 protein levels. These results suggested that EXL1 is involved in the C-starvation response. Phenotypic changes of an exl1 loss-of-function mutant became evident only under corresponding experimental conditions. The mutant showed diminished biomass production in a short-day/low-light growth regime, impaired survival during extended night, and impaired survival of anoxia stress. Basic metabolic processes and signaling pathways are presumed to be barely impaired in exl1, because the mutant showed wild-type levels of major sugars, and transcript levels of only a few genes such as QUA-QUINE STARCH were altered. Our data suggest that EXL1 is part of a regulatory pathway that controls growth and development when C and energy supply is poor.
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MESH Headings
- Adaptation, Physiological/drug effects
- Adaptation, Physiological/genetics
- Adaptation, Physiological/radiation effects
- Arabidopsis/drug effects
- Arabidopsis/genetics
- Arabidopsis/growth & development
- Arabidopsis/radiation effects
- Arabidopsis Proteins/genetics
- Arabidopsis Proteins/metabolism
- Biomass
- Blotting, Western
- Brassinosteroids
- Carbon/pharmacology
- Cholestanols/pharmacology
- Darkness
- Gene Expression Regulation, Plant/drug effects
- Gene Expression Regulation, Plant/radiation effects
- Light
- Mutation/genetics
- Phenotype
- Photoperiod
- Plant Leaves/drug effects
- Plant Leaves/growth & development
- Plant Leaves/radiation effects
- RNA, Messenger/genetics
- RNA, Messenger/metabolism
- Steroids, Heterocyclic/pharmacology
- Stress, Physiological/drug effects
- Stress, Physiological/genetics
- Stress, Physiological/radiation effects
- Sucrose/pharmacology
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Affiliation(s)
| | | | - Carsten Müssig
- Universität Potsdam, Max Planck Institute of Molecular Plant Physiology, Department Lothar Willmitzer, 14476 Golm, Germany (F.S., J.L.); GoFORSYS, Universität Potsdam, 14476 Golm, Germany (C.M.)
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Pantin F, Simonneau T, Rolland G, Dauzat M, Muller B. Control of leaf expansion: a developmental switch from metabolics to hydraulics. PLANT PHYSIOLOGY 2011; 156:803-15. [PMID: 21474437 PMCID: PMC3177277 DOI: 10.1104/pp.111.176289] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2011] [Accepted: 04/04/2011] [Indexed: 05/18/2023]
Abstract
Leaf expansion is the central process by which plants colonize space, allowing energy capture and carbon acquisition. Water and carbon emerge as main limiting factors of leaf expansion, but the literature remains controversial about their respective contributions. Here, we tested the hypothesis that the importance of hydraulics and metabolics is organized according to both dark/light fluctuations and leaf ontogeny. For this purpose, we established the developmental pattern of individual leaf expansion during days and nights in the model plant Arabidopsis (Arabidopsis thaliana). Under control conditions, decreases in leaf expansion were observed at night immediately after emergence, when starch reserves were lowest. These nocturnal decreases were strongly exaggerated in a set of starch mutants, consistent with an early carbon limitation. However, low-light treatment of wild-type plants had no influence on these early decreases, implying that expansion can be uncoupled from changes in carbon availability. From 4 d after leaf emergence onward, decreases of leaf expansion were observed in the daytime. Using mutants impaired in stomatal control of transpiration as well as plants grown under soil water deficit or high air humidity, we gathered evidence that these diurnal decreases were the signature of a hydraulic limitation that gradually set up as the leaf developed. Changes in leaf turgor were consistent with this pattern. It is concluded that during the course of leaf ontogeny, the predominant control of leaf expansion switches from metabolics to hydraulics. We suggest that the leaf is better armed to buffer variations in the former than in the latter.
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Affiliation(s)
| | | | | | | | - Bertrand Muller
- Laboratoire d’Ecophysiologie des Plantes sous Stress Environnementaux, UMR759, Institut de Biologie Intégrative des Plantes, INRA, 34060 Montpellier, France
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McDowell NG. Mechanisms linking drought, hydraulics, carbon metabolism, and vegetation mortality. PLANT PHYSIOLOGY 2011; 155:1051-9. [PMID: 21239620 PMCID: PMC3046567 DOI: 10.1104/pp.110.170704] [Citation(s) in RCA: 512] [Impact Index Per Article: 39.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2010] [Accepted: 01/11/2011] [Indexed: 05/17/2023]
Affiliation(s)
- Nathan G McDowell
- Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA.
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43
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de Dios Barajas-López J, Serrato AJ, Cazalis R, Meyer Y, Chueca A, Reichheld JP, Sahrawy M. Circadian regulation of chloroplastic f and m thioredoxins through control of the CCA1 transcription factor. JOURNAL OF EXPERIMENTAL BOTANY 2011; 62:2039-51. [PMID: 21196476 PMCID: PMC3060684 DOI: 10.1093/jxb/erq394] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2010] [Revised: 11/15/2010] [Accepted: 11/15/2010] [Indexed: 05/19/2023]
Abstract
Chloroplastic thioredoxins f and m (TRX f and TRX m) mediate light regulation of carbon metabolism through the activation of Calvin cycle enzymes. The role of TRX f and m in the activation of Calvin cycle enzymes is best known among the TRX family. However, the discoveries of new potential targets extend the functions of chloroplastic TRXs to other processes in non-photosynthetic tissues. As occurs with numerous chloroplast proteins, their expression comes under light regulation. Here, the focus is on the light regulation of TRX f and TRX m in pea and Arabidopsis during the day/night cycle that is maintained during the subjective night. In pea (Pisum sativum), TRX f and TRX m1 expression is shown to be governed by a circadian oscillation exerted at both the transcriptional and protein levels. Binding shift assays indicate that this control probably involves the interaction of the CCA1 transcription factor and an evening element (EE) located in the PsTRX f and PsTRX m1 promoters. In Arabidopsis, among the multigene family of TRX f and TRX m, AtTRX f2 and AtTRX m2 mRNA showed similar circadian oscillatory regulation, suggesting that such regulation is conserved in plants. However, this oscillation was disrupted in plants overexpressing CCA1 (cca1-ox) or repressing CCA1 and LHY (cca1-lhy). The physiological role of the oscillatory regulation of chloroplastic TRX f and TRX m in plants during the day/night cycle is discussed.
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Affiliation(s)
| | | | - Roland Cazalis
- Université de Namur, URBV, 61 rue de Bruxelles, 5000 Namur, Belgium
| | - Yves Meyer
- Laboratoire Génome et Développement des Plantes, Université de Perpignan, UMR 5096 CNRS-UP-IRD, F-66860 Perpignan, France
| | - Ana Chueca
- Estación Experimental del Zaidín, CSIC, Profesor Albareda 1, 18008 Granada, Spain
| | - Jean Philippe Reichheld
- Laboratoire Génome et Développement des Plantes, Université de Perpignan, UMR 5096 CNRS-UP-IRD, F-66860 Perpignan, France
| | - Mariam Sahrawy
- Estación Experimental del Zaidín, CSIC, Profesor Albareda 1, 18008 Granada, Spain
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Gibon Y, Rolin D. Aspects of experimental design for plant metabolomics experiments and guidelines for growth of plant material. Methods Mol Biol 2011; 860:13-30. [PMID: 22351168 DOI: 10.1007/978-1-61779-594-7_2] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Experiments involve the deliberate variation of one or more factors in order to provoke responses, the identification of which then provides the first step towards functional knowledge. Because environmental, biological, and/or technical noise is unavoidable, biological experiments usually need to be designed. Thus, once the major sources of experimental noise have been identified, individual samples can be grouped, randomised, and/or pooled. Like other 'omics approaches, metabolomics is characterised by the numbers of analytes largely exceeding sample number. While this unprecedented singularity in biology dramatically increases false discovery, experimental error can nevertheless be decreased in plant metabolomics experiments. For this, each step from plant cultivation to data acquisition needs to be evaluated in order to identify the major sources of error and then an appropriate design can be produced, as with any other experimental approach. The choice of technology, the time at which tissues are harvested, and the way metabolism is quenched also need to be taken into consideration, as they decide which metabolites can be studied. A further recommendation is to document data and metadata in a machine readable way. The latter should also describe every aspect of the experiment. This should provide valuable hints for future experimental design and ultimately give metabolomic data a second life. To facilitate the identification of critical steps, a list of items to be considered before embarking on time-consuming and costly metabolomic experiments is proposed.
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Affiliation(s)
- Yves Gibon
- INRA, Centre INRA de Bordeaux, Villenave d'Ornon, France.
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Aranjuelo I, Molero G, Erice G, Avice JC, Nogués S. Plant physiology and proteomics reveals the leaf response to drought in alfalfa (Medicago sativa L.). JOURNAL OF EXPERIMENTAL BOTANY 2011; 62:111-23. [PMID: 20797998 PMCID: PMC2993905 DOI: 10.1093/jxb/erq249] [Citation(s) in RCA: 123] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2010] [Revised: 07/20/2010] [Accepted: 07/20/2010] [Indexed: 05/18/2023]
Abstract
Despite its relevance, protein regulation, metabolic adjustment, and the physiological status of plants under drought is not well understood in relation to the role of nitrogen fixation in nodules. In this study, nodulated alfalfa plants were exposed to drought conditions. The study determined the physiological, metabolic, and proteomic processes involved in photosynthetic inhibition in relation to the decrease in nitrogenase (N(ase)) activity. The deleterious effect of drought on alfalfa performance was targeted towards photosynthesis and N(ase) activity. At the leaf level, photosynthetic inhibition was mainly caused by the inhibition of Rubisco. The proteomic profile and physiological measurements revealed that the reduced carboxylation capacity of droughted plants was related to limitations in Rubisco protein content, activation state, and RuBP regeneration. Drought also decreased amino acid content such as asparagine, and glutamic acid, and Rubisco protein content indicating that N availability limitations were caused by N(ase) activity inhibition. In this context, drought induced the decrease in Rubisco binding protein content at the leaf level and proteases were up-regulated so as to degrade Rubisco protein. This degradation enabled the reallocation of the Rubisco-derived N to the synthesis of amino acids with osmoregulant capacity. Rubisco degradation under drought conditions was induced so as to remobilize Rubisco-derived N to compensate for the decrease in N associated with N(ase) inhibition. Metabolic analyses showed that droughted plants increased amino acid (proline, a major compound involved in osmotic regulation) and soluble sugar (D-pinitol) levels to contribute towards the decrease in osmotic potential (Ψ(s)). At the nodule level, drought had an inhibitory effect on N(ase) activity. This decrease in N(ase) activity was not induced by substrate shortage, as reflected by an increase in total soluble sugars (TSS) in the nodules. Proline accumulation in the nodule could also be associated with an osmoregulatory response to drought and might function as a protective agent against ROS. In droughted nodules, the decrease in N(2) fixation was caused by an increase in oxygen resistance that was induced in the nodule. This was a mechanism to avoid oxidative damage associated with reduced respiration activity and the consequent increase in oxygen content. This study highlighted that even though drought had a direct effect on leaves, the deleterious effects of drought on nodules also conditioned leaf responsiveness.
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Affiliation(s)
- Iker Aranjuelo
- Unitat de Fisiologia Vegetal, Facultat de Biologia, Universitat de Barcelona, Diagonal 645, E-08028 Barcelona, Spain.
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Slater SMH, Micallef MC, Zhang J, Micallef BJ. Identification and characterization of a null-activity mutant containing a cryptic pre-mRNA splice site for cytosolic fructose-1,6-bisphosphatase in Flaveria linearis. PLANT MOLECULAR BIOLOGY 2010; 74:519-536. [PMID: 20882321 DOI: 10.1007/s11103-010-9690-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2010] [Accepted: 09/12/2010] [Indexed: 05/29/2023]
Abstract
Cytosolic fructose-1,6-bisphosphatase (cytFBPase) (E.C. 3.1.3.11) catalyzes the first irreversible reaction of daytime sucrose synthesis. A Flaveria linearis (F. linearis) mutant (line 84-9) previously shown to have ~10% wildtype cytFBPase activity contains no cytFBPase activity based on enzymatic and immunoprecipitation analysis. Genetic segregation and Southern analysis of an F2 population shows one gene copy of cytFBPase in F. linearis and linkage of null cytFBPase activity to the cytFBPase structural gene. A point mutation is present in the structural gene coding for cytFBPase in the mutant, causing a cryptic pre-mRNA splice site and a corresponding 24 amino acid deletion spanning the active site of the enzyme. Collectively, these data support the identification of a null-activity mutant for cytFBPase in F. linearis. This is the first report of a null mutant in the daytime sucrose synthesis pathway confirmed by both enzymatic and molecular analysis. Null cytFBPase in F. linearis does not predispose all lines to high starch accumulation due to an epistatic gene interaction; low starch accumulation in null cytFBPase lines segregates with elevated pyrophosphate-dependent phosphofructokinase (PFP) activity when grown in a 16 h photoperiod. Surprisingly, growth of parental lines and F2 progeny having null cytFBPase in continuous light rescued the wildtype growth phenotype. All null cytFBPase lines showed CO(2)-insensitivity/reversed sensitivity of photosynthesis, indicating that null cytFBPase causes a reduced total capacity for both photosynthesis and end-product synthesis regardless of starch and PFP phenotype. Collectively, the data indicate that F. linearis, a C3-C4 photosynthetic intermediate, has alternative cytFBPase-independent pathways for daytime sucrose synthesis.
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Affiliation(s)
- S M H Slater
- Department of Plant Agriculture, University of Guelph, 50 Stone Road East, Guelph, ON, N1G 2W1, Canada
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Stitt M, Lunn J, Usadel B. Arabidopsis and primary photosynthetic metabolism - more than the icing on the cake. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2010; 61:1067-91. [PMID: 20409279 DOI: 10.1111/j.1365-313x.2010.04142.x] [Citation(s) in RCA: 203] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Historically speaking, Arabidopsis was not the plant of choice for investigating photosynthesis, with physiologists and biochemists favouring other species such as Chlorella, spinach and pea. However, its inherent advantages for forward genetics rapidly led to its adoption for photosynthesis research. In the last ten years, the availability of the Arabidopsis genome sequence - still the gold-standard for plant genomes - and the rapid expansion of genetic and genomic resources have further increased its importance. Research in Arabidopsis has not only provided comprehensive information about the enzymes and other proteins involved in photosynthesis, but has also allowed transcriptional responses, protein levels and compartmentation to be analysed at a global level for the first time. Emerging technical and theoretical advances offer another leap forward in our understanding of post-translational regulation and the control of metabolism. To illustrate the impact of Arabidopsis, we provide a historical review of research in primary photosynthetic metabolism, highlighting the role of Arabidopsis in elucidation of the pathway of photorespiration and the regulation of RubisCO, as well as elucidation of the pathways of starch turnover and studies of the significance of starch for plant growth.
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Affiliation(s)
- Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, Germany.
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48
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Comparot-Moss S, Kötting O, Stettler M, Edner C, Graf A, Weise SE, Streb S, Lue WL, MacLean D, Mahlow S, Ritte G, Steup M, Chen J, Zeeman SC, Smith AM. A putative phosphatase, LSF1, is required for normal starch turnover in Arabidopsis leaves. PLANT PHYSIOLOGY 2010; 152:685-97. [PMID: 20018601 PMCID: PMC2815883 DOI: 10.1104/pp.109.148981] [Citation(s) in RCA: 86] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2009] [Accepted: 12/08/2009] [Indexed: 05/18/2023]
Abstract
A putative phosphatase, LSF1 (for LIKE SEX4; previously PTPKIS2), is closely related in sequence and structure to STARCH-EXCESS4 (SEX4), an enzyme necessary for the removal of phosphate groups from starch polymers during starch degradation in Arabidopsis (Arabidopsis thaliana) leaves at night. We show that LSF1 is also required for starch degradation: lsf1 mutants, like sex4 mutants, have substantially more starch in their leaves than wild-type plants throughout the diurnal cycle. LSF1 is chloroplastic and is located on the surface of starch granules. lsf1 and sex4 mutants show similar, extensive changes relative to wild-type plants in the expression of sugar-sensitive genes. However, although LSF1 and SEX4 are probably both involved in the early stages of starch degradation, we show that LSF1 neither catalyzes the same reaction as SEX4 nor mediates a sequential step in the pathway. Evidence includes the contents and metabolism of phosphorylated glucans in the single mutants. The sex4 mutant accumulates soluble phospho-oligosaccharides undetectable in wild-type plants and is deficient in a starch granule-dephosphorylating activity present in wild-type plants. The lsf1 mutant displays neither of these phenotypes. The phenotype of the lsf1/sex4 double mutant also differs from that of both single mutants in several respects. We discuss the possible role of the LSF1 protein in starch degradation.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | | | | | | | - Alison M. Smith
- John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom (S.C.-M., A.G., S.E.W., A.M.S.); Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, CH–8092 Zurich, Switzerland (O.K., M.S., S.S., S.C.Z.); Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, United Kingdom (D.M.); Institute of Biochemistry and Biology, University of Potsdam, 14476 Potsdam-Golm, Germany (C.E., S.M., G.R., M.S.); and Institute of Molecular Biology, Academia Sinica, Taipei 115, Taiwan (W.-L.L., J.C.)
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49
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Gamper HA, van der Heijden MGA, Kowalchuk GA. Molecular trait indicators: moving beyond phylogeny in arbuscular mycorrhizal ecology. THE NEW PHYTOLOGIST 2010; 185:67-82. [PMID: 19863727 DOI: 10.1111/j.1469-8137.2009.03058.x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi form symbiotic associations with the roots of most plants, thereby mediating nutrient and carbon fluxes, plant performance, and ecosystem dynamics. Although considerable effort has been expended to understand the keystone ecological position of AM symbioses, most studies have been limited in scope to recording organism occurrences and identities, as determined from morphological characters and (mainly) ribosomal sequence markers. In order to overcome these restrictions and circumvent the shortcomings of culture- and phylogeny-based approaches, we propose a shift toward plant and fungal protein-encoding genes as more immediate indicators of mycorrhizal contributions to ecological processes. A number of candidate target genes, involved in the uptake of phosphorus and nitrogen, carbon cycling, and overall metabolic activity, are proposed. We discuss the advantages and disadvantages of future protein-encoding gene marker and current (phylo-) taxonomic approaches for studying the impact of AM fungi on plant growth and ecosystem functioning. Approaches based on protein-encoding genes are expected to open opportunities to advance the mechanistic understanding of ecological roles of mycorrhizas in natural and managed ecosystems.
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Affiliation(s)
- Hannes A Gamper
- Botanical Institute, University of Basel, Hebelstrasse 1, CH-4056 Basel, Switzerland.
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50
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Piques M, Schulze WX, Höhne M, Usadel B, Gibon Y, Rohwer J, Stitt M. Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. Mol Syst Biol 2009; 5:314. [PMID: 19888209 PMCID: PMC2779082 DOI: 10.1038/msb.2009.68] [Citation(s) in RCA: 240] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2009] [Accepted: 07/21/2009] [Indexed: 01/10/2023] Open
Abstract
Plants are exposed to continual changes in the environment. The daily alternation between light and darkness results in massive recurring changes in the carbon budget, and leads to widespread changes in transcript levels. These diurnal changes are superimposed on slower changes in the environment. Quantitative molecular information about the numbers of ribosomes, of transcripts for 35 enzymes in central metabolism and their loading into polysomes is used to estimate translation rates in Arabidopsis rosettes, and explore the consequences for important sub-processes in plant growth. Translation rates for individual enzyme are compared with their abundance in the rosette to predict which enzymes are subject to rapid turnover every day, and which are synthesized at rates that would allow only slow adjustments to sustained changes of the environment, or resemble those needed to support the observed rate of growth. Global translation rates are used to estimate the energy costs of protein synthesis and relate them to the plant carbon budget, in particular the rates of starch degradation and respiration at night.
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Affiliation(s)
- Maria Piques
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, Potsdam-Golm, Germany
| | - Waltraud X Schulze
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, Potsdam-Golm, Germany
| | - Melanie Höhne
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, Potsdam-Golm, Germany
| | - Björn Usadel
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, Potsdam-Golm, Germany
| | - Yves Gibon
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, Potsdam-Golm, Germany
| | - Johann Rohwer
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, Potsdam-Golm, Germany
| | - Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, Potsdam-Golm, Germany
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