Nitrogen isotopes link mycorrhizal fungi and plants to nitrogen dynamics

Comparison of Growth and Metabolomic Profiles of Two Afforestation Cypress Species Cupressus chengiana and Platycladus orientalis Grown at Minjiang Valley in Southwest China

In recent years, afforestation has been conducted in China's hot and dry valleys. However, there is still a paucity of knowledge regarding the performance of tree species in these semi-arid regions, particularly with regard to interspecies differences. The present study compares the growth and metabolome characteristics of two widely used cypress species, namely Cupressus chengiana and Platycladus orientalis, grown at two sites with distinct climate conditions in the hot and dry Minjiang Valley in southwestern China. The findings indicate that C. chengiana trees exhibit superior growth rates compared to P. orientalis trees at both study sites. In comparison to P. orientalis trees, C. chengiana trees demonstrated a greater tendency to close their stomata in order to prevent water loss at the hotter and drier site, Llianghekou (LHK). Additionally, C. chengiana trees exhibited significantly lower hydrogen peroxide levels than P. orientalis trees, either due to lower production and/or higher scavenging of reactive oxygen species. C. chengiana trees accumulated soluble sugars as well as sugar derivatives, particularly those involved in sucrose and galactose metabolisms under stressful conditions. The species-specific differences were also reflected in metabolites involved in the tricarboxylic acid cycle, nitrogen, and secondary metabolisms. The metabolome profiles of the two species appeared to be influenced by the prevailing climatic conditions. It appeared that the trees at the drier and hotter site, LHK, were capable of efficient nitrogen uptake from the soil despite the low soil nitrogen concentration. This study is the first to compare the growth performance and metabolic profiles of two widely used tree species with high resistance to adverse conditions. In addition to the species-specific differences and adaptations to different sites, the present study also provides insights into potential management strategies to alleviate abiotic stress, particularly with regard to nitrogen nutrients, in the context of climate change.

Nutrient responses of vascular plants to N2-fixing tree Alnus hirsuta encroachment in a boreal peatland

The N2-fixing trees Alnus spp. have been widely encroaching into boreal peatlands, but the nutrient responses of native vascular plants remain unclear. Here, we compared nutrient concentrations and isotope signal of six common plants (Betula fruticosa, Salix rosmarinifolia, Vaccinium uliginosum, Rhododendron tomentosum, Chamaedaphne calyculata, and Eriophorum vaginatum) between Alnus hirsuta island and open peatland and assessed plant nutrient responses to A. hirsuta encroachment in boreal peatlands. Alnus hirsuta encroachment increased nitrogen (N) concentration of leaf, branch, and stem. Despite no significant interspecific difference in branch and stem, the increment magnitude of leaf N concentration varied among species, with greatest magnitude for R. tomentosum (55.1% ± 40.7%) and lowest for E. vaginatum (9.80% ± 4.40%) and B. fruticosa (18.4% ± 10.7%). Except for E. vaginatum, the significant increase in δ15N occurred for all organs of shrubs, with interspecific differences in change of leaf δ15N. According to the mass balance equation involving leaf δ15N, R. tomentosum and E. vaginatum, respectively, obtained highest (40.5% ± 19.8%) and lowest proportions (-14.0% ± 30.5%) of N from A. hirsuta. Moreover, the increment magnitudes of leaf N concentration showed a positive linear relationship with the proportion of N from A. hirsuta. In addition, A. hirsuta encroachment reduced leaf phosphorus (P) concentration of deciduous shrubs (i.e., B. fruticosa, S. rosmarinifolia, and V. uliginosum), thus increasing N:P ratio. These findings indicate that Alnus encroachment improves native plant N status and selectively intensifies P limitation of native deciduous shrubs, and highlight that the N acquisition from the symbiotic N2-fixing system regulates plant N responses in boreal peatlands.

Global distribution and drivers of relative contributions among soil nitrogen sources to terrestrial plants

Soil extractable nitrate, ammonium, and organic nitrogen (N) are essential N sources supporting primary productivity and regulating species composition of terrestrial plants. However, it remains unclear how plants utilize these N sources and how surface-earth environments regulate plant N utilization. Here, we establish a framework to analyze observational data of natural N isotopes in plants and soils globally, we quantify fractional contributions of soil nitrate (fNO3-), ammonium (fNH4+), and organic N (fEON) to plant-used N in soils. We find that mean annual temperature (MAT), not mean annual precipitation or atmospheric N deposition, regulates global variations of fNO3-, fNH4+, and fEON. The fNO3- increases with MAT, reaching 46% at 28.5 °C. The fNH4+ also increases with MAT, achieving a maximum of 46% at 14.4 °C, showing a decline as temperatures further increase. Meanwhile, the fEON gradually decreases with MAT, stabilizing at about 20% when the MAT exceeds 15 °C. These results clarify global plant N-use patterns and reveal temperature rather than human N loading as a key regulator, which should be considered in evaluating influences of global changes on terrestrial ecosystems.

Limited efficacy of a commercial microbial inoculant for improving growth and physiological performance of native plant species

Soil microbial inoculants are increasingly being explored as means to improve soil conditions to facilitate ecological restoration. In southwestern Western Australia, highly biodiverse Banksia woodland plant communities are increasingly threatened by various factors including climate change, land development and mining. Banksia woodland restoration is necessary to conserve this plant community. The use of microbial inoculation in Banksia woodland restoration has not yet been investigated. Here, we evaluated the efficacy of a commercial microbial inoculant (GOGO Juice, Neutrog Australia Pty Ltd) for improving the performance of 10 ecologically diverse Banksia woodland plant species in a pot experiment. Plants were subjected to one of two watering regimes (well-watered and drought) in combination with microbial inoculation treatments (non-inoculated and inoculated). Plants were maintained under these two watering treatments for 10 weeks, at which point plants in all treatments were subjected to a final drought period lasting 8 weeks. Plant performance was evaluated by plant biomass and allocation, gas exchange parameters, foliar carbon and nitrogen and stable isotope (δ15N and δ13C) compositions. Plant xylem sap phytohormones were analysed to investigate the effect of microbial inoculation on plant phytohormone profiles and potential relationships with other observed physiological parameters. Across all investigated plant species, inoculation treatments had small effects on plant growth. Further analysis within each species revealed that inoculation treatments did not result in significant biomass gain under well-watered or drought-stressed conditions, and effects on nitrogen nutrition and photosynthesis were variable and minimal. This suggests that the selected commercial microbial inoculant had limited benefits for the tested plant species. Further investigations on the compatibility between the microorganisms (present in the inoculant) and plants, timing of inoculation, viability of the microorganisms and concentration(s) required to achieve effectiveness, under controlled conditions, and field trials are required to test the feasibility and efficacy in actual restoration environments.

Decades-long organic tea production is distinguished by N deficiency: Evidence from soil and tea δ15N data

To investigate the possibility of identifying commercial organic teas from conventional teas based on their isotopic signatures, we sampled tea leaves and soil samples from three tea gardens in Pu'er, China, that underwent decades of certified organic cultivation and compared them with adjacent conventional gardens. We found that long-term organic tea cultivation increased the soil organic carbon and soil pH but significantly decreased the total N content of tea. Higher δ15N values were observed in the organic teas, but significant overlap existed with non-organic teas. The lower N content of the organic tea and contrasting pattern between the organic tea δ15N and soil δ15N suggested that the decline of the N availability could potentially act as a robust characteristic for discriminating between organic and non-organic tea cultivation systems. Further analysis implies that combining tea and soil N content with δ15N value is a promising approach to organic tea identification.

Rhizosphere priming promotes plant nitrogen acquisition by microbial necromass recycling

Nitrogen availability in the rhizosphere relies on root-microorganism interactions, where root exudates trigger soil organic matter (SOM) decomposition through the rhizosphere priming effect (RPE). Though microbial necromass contribute significantly to organically bound soil nitrogen (N), the role of RPEs in regulating necromass recycling and plant nitrogen acquisition has received limited attention. We used 15N natural abundance as a proxy for necromass-N since necromass is enriched in 15N compared to other soil-N forms. We combined studies using the same experimental design for continuous 13CO2 labelling of various plant species and the same soil type, but considering top- and subsoil. RPE were quantified as difference in SOM-decomposition between planted and unplanted soils. Results showed higher plant N uptake as RPEs increased. The positive relationship between 15N-enrichment of shoots and roots and RPEs indicated an enhanced necromass-N turnover by RPE. Moreover, our data revealed that RPEs were saturated with increasing carbon (C) input via rhizodeposition in topsoil. In subsoil, RPEs increased linearly within a small range of C input indicating a strong effect of root-released C on decomposition rates in deeper soil horizons. Overall, this study confirmed the functional importance of rhizosphere C input for plant N acquisition through enhanced necromass turnover by RPEs.

Herbarium specimens reveal that mycorrhizal type does not mediate declining temperate tree nitrogen status over a century of environmental change

Rising atmospheric carbon dioxide concentrations (CO2) and atmospheric nitrogen (N) deposition have contrasting effects on ectomycorrhizal (EM) and arbuscular mycorrhizal (AM) symbioses, potentially mediating forest responses to environmental change. In this study, we evaluated the cumulative effects of historical environmental change on N concentrations and δ15N values in AM plants, EM plants, EM fungi, and saprotrophic fungi using herbarium specimens collected in Minnesota, USA from 1871 to 2016. To better understand mycorrhizal mediation of foliar δ15N, we also analyzed a subset of previously published foliar δ15N values from across the United States to parse the effects of N deposition and CO2 rise. Over the last century in Minnesota, N concentrations declined among all groups except saprotrophic fungi. δ15N also declined among all groups of plants and fungi; however, foliar δ15N declined less in EM plants than in AM plants. In the analysis of previously published foliar δ15N values, this slope difference between EM and AM plants was better explained by nitrogen deposition than by CO2 rise. Mycorrhizal type did not explain trajectories of plant N concentrations. Instead, plants and EM fungi exhibited similar declines in N concentrations, consistent with declining forest N status despite moderate levels of N deposition.

Soil organic nitrogen variation shaped by diverse agroecosystems in a typical karst area: evidence from isotopic geochemistry

Background

Soil organic nitrogen (SON) levels can respond effectively to crop metabolism and are directly related to soil productivity. However, simultaneous comparisons of SON dynamics using isotopic tracing in diverse agroecosystems are lacking, especially in karst areas with fragile ecology.

Methods

To better understand the response of SON dynamics to environmental changes under the coupling of natural and anthropogenic disturbances, SON contents and their stable N isotope (δ15NSON) compositions were determined in abandoned cropland (AC, n = 16), grazing shrubland (GS, n = 11), and secondary forest land (SF, n = 20) from a typical karst area in southwest China.

Results

The SON contents in the SF (mean: 0.09%) and AC (mean: 0.10%) profiles were obviously lower than those in the GS profile (mean: 0.31%). The δ15NSON values ranged from 4.35‰-7.59‰, 3.79‰-7.23‰, and 1.87‰-7.08‰ for the SF, AC, and GS profiles, respectively. Decomposition of organic matter controlled the SON variations in the secondary forest land by the covered vegetation, and that in the grazing shrubland by goat excreta. δ15NSON ranges were controlled by the covered vegetation, and the δ15NSON fractionations during SON transformation were influenced by microorganisms in all surface soil.

Conclusions

The excreta of goats that contained 15N-enriched SON induced a heavier δ15NSON composition in the grazed shrubland. Long-term cultivation consumes SON, whereas moderate grazing increases SON content to reduce the risk of soil degradation. This study suggests that optimized crop-livestock production may benefit the sustainable development of agroecosystems in karst regions.

Soil organic matter turnover: Global implications from δ13C and δ15N signatures

The turnover and residence time of carbon (C) and nitrogen (N) in soil is a fundamental parameter reflecting the rates of soil organic matter (SOM) transformation and the contribution of soils to greenhouse gases fluxes. Based on the global database of the stable isotope composition of C (δ13C) and N (δ15N) depending on soil depth (171 profiles), we assessed С and N turnover and related them to climate, biome types and soil properties. The 13C and 15N discrimination between the litter horizon and mineral soil was evaluated to explain the key processes of litter transformation. The 13C and 15N discrimination by microbial utilization of litter and SOM, as well as the continuous increase of δ13C and δ15N with depth, enabled to assess C and N turnover within SOM. N turnover was two times faster than that of C, which reflects i) repeated N recycling by microorganisms accelerating N turnover, ii) C loss as CO2 and input of new C atoms to cycling, which reduces the C turnover within soil, and iii) generally slower turnover of N free persistent organic compounds (e.g. lignin, suberin, cellulose) compared to the N containing compounds (e.g. amino acids, ribonucleic acids). An increase in temperature and precipitation accelerated C and N turnover because: i) higher microbial activity and SOM decomposition rate, ii) larger soil moisture and fast diffusion of dissolved organics towards exoenzymes, iii) downward transport of 13C-enriched organic matter (e.g. sugars, amino acids), and iii) leaching of 15N-depleted nitrates from the topsoil into subsoil and losses from the whole soil profile. Temperature accelerates SOM turnover stronger than precipitation. The temperature increase by 10 °C accelerates the C and N turnover for 40 %. SOM turnover is boosted by decreasing C/N ratio because: i) SOM with a high C/N ratio originated from litter is converted to microbially-derived SOM in mineral soil characterized by a low C/N ratio; ii) litter with a low C/N ratio is decomposed faster than litter with a high C/N; iii) microbial carbon-use efficiency increases with N availability. The biome type affects SOM decomposition by i) climate: slower turnover under wet and cold conditions, and ii) by litter quality: faster utilization of leaves than needles. Thus, the fastest C turnover is common under evergreen forests and the lowest under mixed and coniferous ones, whereas temperature and C/N ratio are the main factors controlling SOM turnover. Concluding, the assessment of SOM turnover by δ13C and δ15N approach showed two times faster N turnover compared to C, and specifics of SOM turnover depending on the biomes as well as climate conditions.

Warming influences carbon and nitrogen assimilation between a widespread Ericaceous shrub and root-associated fungi

High-latitude ecosystems are warming faster than other biomes and are often dominated by a ground layer of Ericaceous shrubs, which can respond positively to warming. The carbon-for-nitrogen (C-for-N) exchange between Ericaceous shrubs and root-associated fungi may underlie shrub responses to warming, but has been understudied. In a glasshouse setting, we examined the effects of warming on the C-for-N exchange between the Ericaceous shrub Empetrum nigrum ssp. hermaphroditum and its root-associated fungi. We applied different 13 C and 15 N isotope labels, including a simple organic N form (glycine) and a complex organic N form (moss litter) and quantified their assimilation into soil, plant biomass, and root fungal biomass pools. We found that warming lowered the amount of 13 C partitioned to root-associated fungi per unit of glycine 15 N assimilated by E. nigrum, but only in the short term. By contrast, warming increased the amount of 13 C partitioned to root-associated fungi per unit of moss 15 N assimilated by E. nigrum. Our study suggests that climate warming affects the short-term exchange of C and N between a widespread Ericaceous shrub and root-associated fungi. Furthermore, while most isotope tracing studies use labile N sources, we demonstrate that a ubiquitous recalcitrant N source may produce contrasting results.

Topography-driven differences in soil N transformation constrain N availability in karst ecosystems

Fragile karst ecosystems are characterized by complex topographic landscapes associated with high variations in vegetation restoration. Identifying the characteristics and driving factors of nitrogen (N) availability across the topographic gradient is essential to guide vegetation restoration in karst regions. In this study, we collected soil samples and plant leaves along the topographic gradient (ridge, upper slope, middle slope, and foot slope) of convex slopes in the karst fault basin of southwest China, and determined the indicators reflecting soil N availability, N transformation rates, and their controlling factors. Our results showed that foliar N content and δ15N value, soil inorganic N content and δ15N value, and foliar N:P ratio were substantially lower on the steep hillslopes than on the flat top ridge. Steep slope soils also had a lower enzyme C:N ratio but a higher enzyme N:P ratio than the flat ridge soils. Furthermore, the vector angles calculated by soil extracellular enzyme analysis were below 45o in all studied soils and decreased significantly with increasing slope, indicating that microbial growth was generally limited by N. These results jointly suggest the declines in soil N availability across the topographic gradient, which are further explained by the changes in soil inherent N transformation processes. As the slope became steeper, soil mineralization and autotrophic nitrification (ONH4) rates decreased significantly, while ratio of microbial NH4+ immobilization to ONH4 and NH4+ adsorption rate increased significantly, indicating the decrease in soil inorganic N supply capacity. We further found that deteriorated soil structure, decreased soil organic matter and calcium content, altered microbial abundance, and increased ratios of fungi to bacteria and gram-positive bacteria to gram-negative bacteria were the primary drivers of reduced N transformation rates and N availability across the topographic gradient. Overall, this study highlights the critical role of the topography in controlling soil N availability by regulating N transformation processes in karst regions. The topography should be considered an important factor affecting the functions and services of karst ecosystems.

Soil δ15N spatial distribution is primarily shaped by climatic patterns in the semiarid Caatinga, Northeast Brazil

Soil nitrogen isotopic composition (δ15Nsoil) is an invaluable tool as it integrates nitrogen (N) transformations in soils. In addition to serving as a baseline to understand the N cycle, spatial representations of δ15Nsoil across landscapes (or isoscapes) is a multi-purpose tool useful to investigate, for example, plant-microbe interactions, animal migration and forensics. We investigate the climatic and edaphic controls of δ15Nsoil utilising data from 29 geographical locations sampled across the semiarid Brazilian Caatinga biome. The sampling covered a mean annual precipitation (PA) gradient ranging from 0.51 to 1.36 m a-1 and eight soil types originating from three different geological origins. Our data show that the combination of higher aridity and lower seasonality (ψ) leads to higher values of δ15Nsoil. Moreover, soil total carbon had a positive relationship with δ15Nsoil, appearing within the best-supported models according to the information-theoretic approach undertaken here. The contribution to the plant communities by the Fabaceae trees expressed as their basal area was not related to δ15Nsoil values, suggesting that the magnitude of biological N fixation in the Caatinga is not large enough to be reflected in the soil. In addition, considering PA in a categorical fashion, i.e., 'high' (> 0.8 m a-1) and 'low' PA (< 0.8 m a-1), we found that, within the wetter category, δ15Nsoil was positively related to several soil properties (i.e., clay content, effective cation exchange capacity, exchangeable calcium, silt content, pHH2O, total phosphorus and sum of bases) and negatively related to sand content. Our study provides new insights into the functioning of semiarid ecosystems from a pedo-isotopic perspective and contributes to the overall understanding of the N cycle in the Caatinga region, with the potential to support the development of new conceptualisation of biogeochemical process and testing of global models that simulate N and C cycles.

Tree-ring δ15N as an indicator of nitrogen dynamics in stands with N2-fixing Alnus rubra

Tree-ring δ15N may depict site-specific, long-term patterns in nitrogen (N) dynamics under N2-fixing species, but field trials with N2-fixing tree species are lacking and the relationship of temporal patterns in tree-ring δ15N to soil N dynamics is controversial. We examined whether the tree-ring δ15N of N2-fixing red alder (Alnus rubra Bong.) would mirror N accretion rates and δ15N of soils and whether the influence of alder-fixed N could be observed in the wood of a neighboring conifer. We sampled a 27-year-old replacement series trial on south-eastern Vancouver Island, with red alder and coastal Douglas-fir (Pseudotsuga menziesii [Mirb.] Franco) planted in five proportions (0/100, 11/89, 25/75, 50/50 and 100/0) at a uniform stem density. An escalation in forest floor N content was evident with an increasing proportion of red alder, equivalent to a difference of ~750 kg N ha-1 between 100% Douglas-fir versus 100% alder. The forest floor horizon also had high δ15N values in treatments with more red alder. Red alder had a consistent quadratic fit in tree-ring δ15N over time, with a net increase of $\sim$1.5‰, on average, from initial values, followed by a plateau or slight decline. Douglas-fir tree-ring δ15N, in contrast, was largely unchanged over time (in three of four plots) but was significantly higher in the 50/50 mix. The minor differences in current leaf litter N content and δ15N between alder and Douglas-fir, coupled with declining growth in red alder, suggests the plateau or declining trend in alder tree-ring δ15N could coincide with lower N2-fixation rates, potentially by loss in alder vigor at canopy closure, or down-regulation via nitrate availability.

Mycorrhizal C/N ratio determines plant-derived carbon and nitrogen allocation to symbiosis

Carbon allocation of trees to ectomycorrhizas is thought to shape forest nutrient cycling, but the sink activities of different fungal taxa for host resources are unknown. Here, we investigate fungal taxon-specific differences in naturally composed ectomycorrhizal (EM) communities for plant-derived carbon and nitrogen. After aboveground dual labeling of young beech with 15N and 13C, ectomycorrhizas formed with different fungal taxa exhibit strong differences in label enrichment. Secondary Ion Mass Spectrometry (SIMS) imaging of nitrogen in cross sections of ectomycorrhizas demonstrates plant-derived 15N in both root and fungal structures. Isotope enrichment in ectomycorrhizas correlates with that in the corresponding ectomycorrhiza-attached lateral root, supporting fungal taxon-specific N and C fluxes in ectomycorrhizas. The enrichments with 13C and 15N in the symbiosis decrease with increasing C/N ratio of ectomycorrhizas, converging to zero at high C/N. The relative abundances of EM fungal species on roots are positively correlated with 13C enrichment, demonstrating higher fitness of stronger than of less C-demanding symbioses. Overall, our results support that differences among the C/N ratios in ectomycorrhizas formed with different fungal species regulate the supply of the symbioses with host-derived carbon and provide insights on functional traits of ectomycorrhizas, which are important for major ecosystem processes.

Forest inventory tree core archive reveals changes in boreal wood traits over seven decades

Boreal forests play an important role in the global carbon (C) cycle, and there is great interest in understanding how they respond to environmental change, including nitrogen (N) and water limitation, which could impact future forest growth and C storage. Utilizing tree cores archived by the Swedish National Forest Inventory, we measured stemwood traits, including stable N and C isotope composition which provides valuable information related to N availability and water stress, respectively, as well as N and C content, and C/N ratio over 1950-2017 in two central Swedish counties covering an area of ca. 55,000 sq. km (n = 1038). We tested the hypothesis that wood traits are changing over time, and that temporal patterns would differ depending on alternative dendrochronological reconstruction methods, i.e. the commonly applied "single tree method" (STM) or a conceptually stronger "multiple tree method" (MTM). Averaged across all MTMs, our data showed that all five wood traits for Picea abies and Pinus sylvestris changed over time. Wood δ15N strongly declined, indicating progressive nitrogen limitation. The decline in δ13C tracked the known atmospheric δ13CO2 signal, suggesting no change in water stress occurred. Additionally, wood N significantly increased, while C and C/N ratios declined over time. Furthermore, wood trait patterns sometimes differed between dendrochronological methods. The most notable difference was for δ15N, where the slope was much shallower for the STM compared to MTMs for both species, indicating that mobility of contemporary N is problematic when using the STM, resulting in substantially less sensitivity to detect historical signals. Our study indicates strong temporal changes in boreal wood traits and also indicates that the field of dendroecology should adopt new methods and archiving practices for studying highly mobile element cycles, such as nitrogen, which are critical for understanding environmental change in high latitude ecosystems.

Examination of the negative correlation between leaf δ15N and the N:P ratio across a northeast-southwest transect in China

Nitrogen (N) and phosphorus (P) are two crucial limiting mineral elements for terrestrial plants. Although the leaf N:P ratio is extensively used to indicate plant nutrient limitations, the critical N:P ratios cannot be universally applied. Some investigations have suggested that leaf nitrogen isotopes (δ15N) can provide another proxy for nutrient limitations along with the N:P ratio, but the negative relationships between N:P and δ15N were mainly limited to fertilization experiments. It will obviously benefit the study of the nature of nutrient limitations if the relationship could be explained more generally. We analyzed leaf δ15N, N, and P contents across a northeast-southwest transect in China. Leaf δ15N was weakly negatively correlated with leaf N:P ratios for all plants, while there was no correlation between them for various plant groups, including different growth forms, genera, and species across the entire N:P range. This suggests that the use of leaf δ15N in indicating the shift of nutrient limitations across the whole N:P range still requires more validated field investigations. Notably, negative relationships between δ15N and N:P hold for plants with N:P ratios between 10 and 20 but not for plants with N:P ratios lower than 10 or higher than 20. That is, changes in leaf δ15N along with the N:P ratio of plants that are co-limited by N and P can exhibit variations in plant nutrient limitations, whereas plants that are strictly limited by N and P cannot. Moreover, these relationships are not altered by vegetation type, soil type, MAP, or MAT, indicating that the use of leaf δ15N in reflecting shifts in nutrient limitations, depending on the plant nutrient limitation range, is general. We examined the relationships between leaf δ15N and the N:P ratio across an extensive transect, providing references for the widespread use of leaf δ15N in reflecting shifts in nutrient limitation.

Nutrients and soil structure influence furovirus infection of wheat

Soil-borne wheat mosaic virus (SBWMV) and Soil-borne cereal mosaic virus (SBCMV), genus Furovirus, family Virgaviridae, cause significant crop losses in cereals. The viruses are transmitted by the soil-borne plasmodiophorid Polymyxa graminis. Inside P. graminis resting spores, the viruses persist in the soil for long time, which makes the disease difficult to combat. To open up novel possibilities for virus control, we explored the influence of physical and chemical soil properties on infection of wheat with SBWMV and SBCMV. Moreover, we investigated, whether infection rates are influenced by the nutritional state of the plants. Infection rates of susceptible wheat lines were correlated to soil structure parameters and nutrient contents in soil and plants. Our results show that SBWMV and SBCMV infection rates decrease the more water-impermeable the soil is and that virus transmission depends on pH. Moreover, we found that contents of several nutrients in the soil (e.g. phosphorous, magnesium, zinc) and in planta (e.g. nitrogen, carbon, boron, sulfur, calcium) affect SBWMV and SBCMV infection rates. The knowledge generated may help paving the way towards development of a microenvironment-adapted agriculture.

Integration of Transcriptomic and Metabolomic Profiles Provides Insights into the Influence of Nitrogen on Secondary Metabolism in Fusarium sacchari

Nitrogen availability might play an essential role in plant diseases by enhancing fungal cell growth and influencing the expression of genes required for successful pathogenesis. Nitrogen availability could modulate secondary metabolic pathways as evidenced by the significant differential expression of several core genes involved in mycotoxin biosynthesis and genes encoding polyketide synthase/nonribosomal peptide synthetases, cytochrome P450 and carbohydrate-active enzymes in Fusarium sacchari, grown on different nitrogen sources. A combined analysis was carried out on the transcript and metabolite profiles of regulatory metabolic processes and the virulence of Fusarium sacchari grown on various nitrogen sources. The nitrogen regulation of the gibberellin gene cluster included the metabolic flux and multiple steps of gibberellin synthesis. UHPLC-MS/MS-based metabolome analysis revealed the coordination of these related transcripts and the accumulation of gibberellin metabolites. This integrated analysis allowed us to uncover additional information for a more comprehensive understanding of biological events relevant to fungal secondary metabolic regulation in response to nitrogen availability.

Contrasting plant-soil-microbial feedbacks stabilize vegetation types and uncouple topsoil C and N stocks across a subarctic-alpine landscape

Global vegetation regimes vary in belowground carbon (C) and nitrogen (N) dynamics. However, disentangling large-scale climatic controls from the effects of intrinsic plant-soil-microbial feedbacks on belowground processes is challenging. In local gradients with similar pedo-climatic conditions, effects of plant-microbial feedbacks may be isolated from large-scale drivers. Across a subarctic-alpine mosaic of historic grazing fields and surrounding heath and birch forest, we evaluated whether vegetation-specific plant-microbial feedbacks involved contrasting N cycling characteristics and C and N stocks in the organic topsoil. We sequenced soil fungi, quantified functional genes within the inorganic N cycle, and measured ¹⁵ N natural abundance. In grassland soils, large N stocks and low C : N ratios associated with fungal saprotrophs, archaeal ammonia oxidizers, and bacteria capable of respiratory ammonification, indicating maintained inorganic N cycling a century after abandoned reindeer grazing. Toward forest and heath, increasing abundance of mycorrhizal fungi co-occurred with transition to organic N cycling. However, ectomycorrhizal fungal decomposers correlated with small soil N and C stocks in forest, while root-associated ascomycetes associated with small N but large C stocks in heath, uncoupling C and N storage across vegetation types. We propose that contrasting, positive plant-microbial feedbacks stabilize vegetation trajectories, resulting in diverging soil C : N ratios at the landscape scale.

Ectomycorrhizal diversity, taxon-specific traits and root N uptake in temperate beech forests

Roots of forest trees are colonized by a diverse spectrum of ectomycorrhizal (EM) fungal species differing in their nitrogen (N) acquisition abilities. Here, we hypothesized that root N gain is the result of EM fungal diversity or related to taxon-specific traits for N uptake. To test our hypotheses, we traced ¹⁵ N enrichment in fine roots, coarse roots and taxon-specific ectomycorrhizas in temperate beech forests in two regions and three seasons, feeding 1 mM NH₄ NO₃ labelled with either ¹⁵ NH₄ ⁺ or ¹⁵ NO₃ ^- . We morphotyped > 45 000 vital root tips and identified 51 of 53 detected EM species by sequencing. EM root tips exhibited strong, fungal taxon-specific variation in ¹⁵ N enrichment with higher NH₄ ⁺ than NO₃ ^- enrichment. The translocation of N into the upper parts of the root system increased with increasing EM fungal diversity. Across the growth season, influential EM species predicting root N gain were not identified, probably due to high temporal dynamics of the species composition of EM assemblages. Our results support that root N acquisition is related to EM fungal community-level traits and highlight the importance of EM diversity for tree N nutrition.

Translocation of elements and fractionation of Mg, Cu, Zn, and Cd stable isotopes in a penny bun mushroom (Boletus edulis) from western Czech Republic

Boletus edulis mushroom behaved as an accumulating biosystem with respect to Ag, Rb, Zn, and K. The mushroom was not an efficient accumulator of toxic As, Pb, and Cr, but Se and Cd displayed much higher concentrations in the mushroom than in the substrate samples. Other elements were bioexclusive. Different elements had different within-mushroom mobilities. The highest mobilities were displayed by Zn and Ag, and the lowest by Ti. The mushroom's fruiting body preferentially took up lighter Mg, Cu, and Cd isotopes (Δ26MgFB-soil =  -0.75‰; Δ65CuFB-soil =  -0.96‰; Δ114CdFB-soil =  -0.63‰), and the heavier 66Zn isotope (Δ66ZnFB-soil = 0.92‰). Positive within-mushroom Zn isotope fractionation resulted in accumulation of the heavier 66Zn (Δ66Zncap-stipe = 0.12‰) in the mushroom's upper parts. Cadmium displayed virtually no within-mushroom isotope fractionation. Different parts of the fruiting body fractionated Mg and Cu isotopes differently. The middle part of the stipe (3-6 cm) was strongly depleted in the heavier 26 Mg with respect to the 0-3 cm (Δ26Mgstipe(3-6)-stipe(0-3) =  -0.73‰) and 6-9 cm (Δ26Mgstipe(6-9)-stipe(3-6) = 0.28‰) sections. The same stipe part was strongly enriched in the heavier 65Cu with respect to the 0-3 cm (Δ65Custipe(3-6)-stipe(0-3) = 0.63‰) and 6-9 cm (Δ65Custipe(6-9)-stipe(3-6) =  -0.42‰) sections. An overall tendency for the upper mushroom's parts to accumulate heavier isotopes was noted for Mg (Δ26Mgcap-stipe = 0.20‰), Zn (Δ66Zncap-stipe = 0.12‰), and Cd (Δ114Cdcap-stipe = 0.04‰), whereas Cu showed the opposite trend (Δ65Cucap-stipe =  -0.08‰).

Ericoid mycorrhizal fungi mediate the response of ombrotrophic peatlands to fertilization: a modeling study

Ericaceous shrubs adapt to the nutrient-poor conditions in ombrotrophic peatlands by forming symbiotic associations with ericoid mycorrhizal (ERM) fungi. Increased nutrient availability may diminish the role of ERM pathways in shrub nutrient uptake, consequently altering the biogeochemical cycling within bogs. To explore the significance of ERM fungi in ombrotrophic peatlands, we developed the model MWMmic (a peat cohort-based biogeochemical model) into MWMmic-NP by explicitly incorporating plant-soil nitrogen (N) and phosphorus (P) cycling and ERM fungi processes. The new model was applied to simulate the biogeochemical cycles in the Mer Bleue (MB) bog in Ontario, Canada, and their responses to fertilization. MWMmic_NP reproduced the carbon(C)-N-P cycles and vegetation dynamics observed in the MB bog, and their responses to fertilization. Our simulations showed that fertilization increased shrub biomass by reducing the C allocation to ERM fungi, subsequently suppressing the growth of underlying Sphagnum mosses, and decreasing the peatland C sequestration. Our species removal simulation further demonstrated that ERM fungi were key to maintaining the shrub-moss coexistence and C sink function of bogs. Our results suggest that ERM fungi play a significant role in the biogeochemical cycles in ombrotrophic peatlands and should be considered in future modeling efforts.

Above- and belowground interplay: Canopy CO2 uptake, carbon and nitrogen allocation and isotope fractionation along the plant-ectomycorrhiza continuum

In forests, mycorrhizal fungi regulate carbon (C) and nitrogen (N) dynamics. We evaluated the interplay among ectomycorrhizas (ECM), ecosystem C fluxes, tree productivity, C and N exchange and isotopic fractionation along the soil-ECM-plant continuum in a Mediterranean beech forest. From bud break to leaf shedding, we monitored: net ecosystem exchange (NEE, a measure of the net exchange of C between an ecosystem and the atmosphere), leaf area index, stem growth, N concentration, δ¹³ C and δ¹⁵ N in rhizosphere soil, ectomycorrhizal fine root tips (ERT), ECM-free fine root portions (NCR) and leaves. Seasonal changes in ERT relative biomass were strictly related to NEE and mimicked those detected in the radial growth. The analysis of δ¹³ C in ERT, leaves and NCR highlighted the impact of canopy photosynthesis on ERT development and an asynchronous seasonal C allocation strategy between ERT and NCR at the root tips level. Concerning N, δ¹⁵ N of leaves was negatively related to that of ERT and dependent on seasonal ¹⁵ N differences between ERT and NCR. Our results unravel a synchronous C allocation towards ERT and tree stem driven by the increasing NEE in spring-early summer. Moreover, they highlighted a phenology-dependent ¹⁵ N fractionation during N transfer from ECM to their hosts. This evidence, obtained in mature beech trees under natural conditions, may improve the knowledge of Mediterranean forests functionality.

Arbuscular mycorrhizal fungal communities with contrasting life-history traits influence host nutrient acquisition

Life-history traits differ substantially among arbuscular mycorrhizal (AM) fungal families, potentially affecting hyphal nutrient acquisition efficiency, host nutrition, and thereby plant health and ecosystem function. Despite these implications, AM fungal community life-history strategies and community trait diversity effects on host nutrient acquisition are poorly understood. To address this knowledge gap, we grew sudangrass with AM fungal communities representing contrasting life-history traits and diversity: either (1) five species in the AM family Gigasporaceae, representing competitor traits, (2) five Glomerales species, representing ruderal traits, or (3) a mixed-trait community combining all ten AM fungal species. After 12 weeks, we measured above and belowground plant biomass and aboveground nutrient uptake and concentration. Overall, AM fungal colonization increased host nutrition, biomass, and foliar δ⁵nitrogen enrichment compared to the uncolonized control. Between the single-trait communities, the Glomeraceae community generally outperformed the Gigasporaceae community in host nutrition and plant growth, increasing plant phosphorus (P) uptake 1.5 times more than the Gigasporaceae community. We saw weak evidence for a synergistic effect of the mixed community, which was only higher for plant P concentration (1.26 times higher) and root colonization (1.26 times higher) compared to the single-trait communities. However, this higher P concentration did not translate to more P uptake or the highest plant biomass for the mixed community. These findings demonstrate that the AM symbiosis is affected by community differences at high taxonomic levels and provide insight into how different AM fungal communities and their associated traits affect host nutrition for fast-growing plant species.

Nitrogen Preference of Dominant Species during Hailuogou Glacier Retreat Succession on the Eastern Tibetan Plateau

Plant nitrogen (N) uptake preference is a key factor affecting plant nutrient acquisition, vegetation composition and ecosystem function. However, few studies have investigated the contribution of different N sources to plant N strategies, especially during the process of primary succession of a glacial retreat area. By measuring the natural abundance of N isotopes (δ¹⁵N) of dominant plants and soil, we estimated the relative contribution of different N forms (ammonium-NH₄⁺, nitrate-NO₃^- and soluble organic N-DON) and absorption preferences of nine dominant plants of three stages (12, 40 and 120 years old) of the Hailuogou glacier retreat area. Along with the chronosequence of primary succession, dominant plants preferred to absorb NO₃^- in the early (73.5%) and middle (46.5%) stages. At the late stage, soil NH₄⁺ contributed more than 60.0%, In addition, the contribution of DON to the total N uptake of plants was nearly 19.4%. Thus, the dominant plants' preference for NO₃^- in the first two stages changes to NH₄⁺ in the late stages during primary succession. The contribution of DON to the N source of dominant plants should not be ignored. It suggests that the shift of N uptake preference of dominant plants may reflect the adjustment of their N acquisition strategy, in response to the changes in their physiological traits and soil nutrient conditions. Better knowledge of plant preferences for different N forms could significantly improve our understanding on the potential feedbacks of plant N acquisition strategies to environmental changes, and provide valuable suggestions for the sustainable management of plantations during different successional stages.

The effects of ectomycorrhizal and saprotropic fungi on soil nitrogen mineralization differ from those of arbuscular and ericoid mycorrhizal fungi on the eastern Qinghai-Tibetan Plateau

Interactions between soil fungi and soil environmental factors regulate soil nitrogen (N) mineralization rates on the eastern Qinghai-Tibetan Plateau. Some studies have also illuminated differences in soil N mineralization rate based on different mycorrhizal forests, but the associated effect of soil fungal functional guilds and soil environmental factors underlying this process are not well-understood. Three primary forests respectively dominated by Abies fargesii var. faxoniana (ectomycorrhizal, EcM), Cupressus chengiana (arbuscular mycorrhizal, AM) and Rhododendron phaeochrysum (ericoid mycorrhizal, ErM) trees were selected in this area. Meanwhile, soil net N mineralization rate, soil fungal composition and soil enzyme activity among these three mycorrhizal forests were studied. Our results showed that there were significant differences in the seasonal variation of soil net N mineralization rates among three mycorrhizal forests. Soil net N mineralization rate in the AM forest was faster. EcM fungi and saprotroph are the main functional guilds in these three mycorrhizal forests. Meanwhile, the relative abundances of soil fungal functional guilds, soil temperature and soil peroxidase activity could explain 85.0% in the difference of soil net ammonification rate among three mycorrhizal forests. In addition, soil temperature, soil water-filled pore space and soil ammonium content play a central role in controlling the differing soil net nitrification rate among three mycorrhizal forests. Our results suggest differences in soil net mineralization among different mycorrhizal forest types are driven mainly by soil net ammonification. Soil fungal functional guilds and temperature regulate the rate of soil net ammonification by modulating soil peroxidase activity.

Multi-isotope zooarchaeological investigations at Abri du Maras: The paleoecological and paleoenvironmental context of Neanderthal subsistence strategies in the Rhône Valley during MIS 3

The exploitation of mid- and large-sized herbivores (ungulates) was central to hominin subsistence across Late Pleistocene Europe. Reconstructing the paleoecology of prey-taxa is key to better understanding procurement strategies, decisions and behaviors, and the isotope analysis of faunal bones and teeth found at archaeological sites represent a powerful means of accessing information about past faunal behaviors. These isotope zooarchaeological approaches also have a near-unique ability to reveal environmental conditions contemporary to the human activities that produced these remains. Here, we present the results of a multi-isotope, multitissue study of ungulate remains from the Middle Paleolithic site of Abri du Maras, southern France, providing new insights into the living landscapes of the Rhône Valley during MIS 3 (level 4.2 = 55 ± 2 to 42 ± 3 ka; level 4.1 = 46 ± 3 to 40 ± 3 ka). Isotope data (carbon, nitrogen) reveal the dietary niches of different ungulate taxa, including the now-extinct giant deer (Megaloceros). Oxygen isotope data are consistent with a mild seasonal climate during level 4.2, where horse (Equus), bison (Bison), and red deer (Cervus elaphus) were exploited year-round. Strontium and sulfur isotope analyses provide new evidence for behavioral plasticity in Late Pleistocene European reindeer (Rangifer) between level 4.2 and level 4.1, indicating a change from the migratory to the sedentary ecotype. In level 4.1, the strong seasonal nature of reindeer exploitation, combined with their nonmigratory behavior, is consistent with a seasonally restricted use of the site by Neanderthals at that time or the preferential hunting of reindeer when in peak physical condition during the autumn.

15N Natural Abundance of C3 and C4 Herbaceous Plants and Its Response to Climatic Factors along an Agro-Pastoral Zone of Northern China

The nitrogen isotope composition of plants (δ¹⁵N) can comprehensively reflect information on climate change and ecosystems' nitrogen cycle. By collecting common herbs and soil samples along the 400 mm isoline of mean annual precipitation (MAP) in the agro-pastoral zone of North China (APZNC) and measuring their δ¹⁵N values, the statistical characteristics of foliar δ¹⁵N of herbs and the responses of foliar δ¹⁵N to the MAP and mean annual temperature (MAT) were analyzed. The results showed that: (1) the δ¹⁵N values of all herbs investigated varied from -5.5% to 15.25%. Among them, the δ¹⁵N value range of C3 herbs (-5.5~15.00%) was wider than that of C4 herbs (-2.17~15.25%), but the average value (3.27%) of C3 herbs was significantly lower than that of C4 herbaceous plants (5.55%). This difference provides an important method for identifying plants of different photosynthetic types by nitrogen isotope technology. (2) Along the transect from northeast to southwest, the δ¹⁵N of both C3 and C4 herbs decreased with the increase in the MAP, but not significantly for C3 herbs. The inverse relationship between the nitrogen isotopic signatures of herbs and MAP is consistent with previous studies. However, the MAP in the APZNC is found to only explain a small amount of the observed variance in the δ¹⁵N herbs (C3 herbs: 10.40%; C4 herbs: 25.03%). (3) A strong negative relationship was found between δ¹⁵N of herbs and MAT across the transect (C3 herbs: -0.368%/°C; C4 herbs: -0.381%/°C), which was contrary to the global pattern and some regional patterns. There was no significant difference in the δ¹⁵N responses of two different photosynthetic herbs to temperature, but the effect of temperature on the variances of δ¹⁵N of C3 and C4 herbs was significantly greater than that of precipitation. This suggests that temperature is a key factor affecting foliar δ¹⁵N of herbs in this transect. The above findings may be of value to global change researchers studying the processes of the nitrogen cycle and gaining an insight into climate dynamics of the past.

Organochemical Characterization of Peat Reveals Decomposition of Specific Hemicellulose Structures as the Main Cause of Organic Matter Loss in the Acrotelm

Peatlands store carbon in the form of dead organic residues. Climate change and human impact impose risks on the sustainability of the peatlands carbon balance due to increased peat decomposition. Here, we investigated molecular changes in the upper peat layers (0-40 cm), inferred from high-resolution vertical depth profiles, from a boreal peatland using two-dimensional ¹H-¹³C nuclear magnetic resonance (NMR) spectroscopy, and comparison to δ¹³C, δ¹⁵N, and carbon and nitrogen content. Effects of hydrological conditions were investigated at respective sites: natural moist, drainage ditch, and natural dry. The molecular characterization revealed preferential degradation of specific side-chain linkages of xylan-type hemicelluloses within 0-14 cm at all sites, indicating organic matter losses up to 25%. In contrast, the xylan backbone, galactomannan-type hemicelluloses, and cellulose were more resistant to degradation and accumulated at the natural moist and drainage site. δ¹³C, δ¹⁵N, and carbon and nitrogen content did not correlate with specific hemicellulose structures but reflected changes in total carbohydrates. Our analysis provides novel insights into peat carbohydrate decomposition and indicates substantial organic matter losses in the acrotelm due to the degradation of specific hemicellulose structures. This suggests that variations in hemicellulose content and structure influence peat stability, which may have important implications with respect to climate change.

Soil nutrients and plant diversity affect ectomycorrhizal fungal community structure and functional traits across three subalpine coniferous forests

The symbiotic relationship between ectomycorrhizal fungi (EMF) and the roots of host plants is significantly important in regulating the health and stability of ecosystems, especially of those such as the climate warming affected subalpine forest ecosystems. Therefore, from the coniferous forest systems located in the Southern Qinghai-Tibetan Plateau, root tips from three forest tree species: Pinus wallichiana, Abies spectabilis and Picea spinulosa, were collected to look for the local causes of EMF community composition and diversity patterns. The EMF colonization rate, diversity and taxonomic community structure were determined by morphotyping and sanger sequencing of the fungal ITS gene from the root tip samples. Soil exploration types were identified based on the morphologies of the ectomycorrhizas, coupled with soil properties analysis and plant diversity survey. Contrasting patterns of EMF community and functional diversity were found across the studied three forests types dominated by different coniferous tree species. In terms of associations between soil and EMF properties, the total phosphorus (TP) and nitrate (NO₃⁻) contents in soil negatively correlated with the colonization rate and the Shannon diversity index of EMF in contrast to the positive relationship between TP and EMF richness. The soil total nitrogen (TN), ammonium (NH₄⁺) and plant diversity together caused 57.6% of the total variations in the EMF taxonomic community structure at the three investigated forest systems. Whereas based on the soil exploration types alone, NH₄⁺ and TN explained 74.2% of variance in the EMF community structures. Overall, the findings of this study leverage our understanding of EMF dynamics and local influencing factors in coniferous forests dominated by different tree species within the subalpine climatic zone.

Enhancement of nitrogen use efficiency through agronomic and molecular based approaches in cotton

Cotton is a major fiber crop grown worldwide. Nitrogen (N) is an essential nutrient for cotton production and supports efficient crop production. It is a crucial nutrient that is required more than any other. Nitrogen management is a daunting task for plants; thus, various strategies, individually and collectively, have been adopted to improve its efficacy. The negative environmental impacts of excessive N application on cotton production have become harmful to consumers and growers. The 4R's of nutrient stewardship (right product, right rate, right time, and right place) is a newly developed agronomic practice that provides a solid foundation for achieving nitrogen use efficiency (NUE) in cotton production. Cropping systems are equally crucial for increasing production, profitability, environmental growth protection, and sustainability. This concept incorporates the right fertilizer source at the right rate, time, and place. In addition to agronomic practices, molecular approaches are equally important for improving cotton NUE. This could be achieved by increasing the efficacy of metabolic pathways at the cellular, organ, and structural levels and NUE-regulating enzymes and genes. This is a potential method to improve the role of N transporters in plants, resulting in better utilization and remobilization of N in cotton plants. Therefore, we suggest effective methods for accelerating NUE in cotton. This review aims to provide a detailed overview of agronomic and molecular approaches for improving NUE in cotton production, which benefits both the environment and growers.

The below-ground carbon and nitrogen cycling patterns of different mycorrhizal forests on the eastern Qinghai-Tibetan Plateau

Mycorrhizal fungi can form symbiotic associations with tree species, which not only play an important role in plant survival and growth, but also in soil carbon (C) and nitrogen (N) cycling. However, the understanding of differences in soil C and N cycling patterns among forests with different mycorrhizal types is still incomplete. In order to determine the similarities and differences of soil C and N cycling patterns in different mycorrhizal forest types, three primary forests dominated by ectomycorrhizal (EcM), arbuscular mycorrhizal (AM) and ericoid mycorrhizal (ErM) trees respectively were studied on the eastern Qinghai-Tibetan Plateau. Indicators associated with soil C and N cycling, including leaf litter quality, soil C and N contents, soil C and N fluxes, and soil microbial biomass C and N contents were measured in each mycorrhizal type forest. The results showed that leaf litter quality was significantly lower with high C:N ratio and lignin: N ratio in ErM forest than that in AM and EcM forests. Soil CO₂ flux (508.25 ± 65.51 mg m^-2 h^-1) in AM forest was significantly higher than that in EcM forest (387.18 ± 56.19 mg m^-2 h^-1) and ErM forest (177.87 ± 58.40 mg m^-2 h^-1). Furthermore, soil inorganic N content was higher in the AM forest than that in EcM and ErM forests. Soil net N mineralization rate (-0.02 ± 0.03 mg kg^-1 d^-1) was lower in ErM forest than that in EcM and AM forests. We speculated that AM and EcM forests were relatively characterized by rapid soil C cycling comparing to ErM forest. The soil N cycling in EcM and ErM forests were lower, implying they were 'organic' N nutrition patterns, and the pattern in ErM forest was more obvious.

Selection pressure on the rhizosphere microbiome can alter nitrogen use efficiency and seed yield in Brassica rapa

Microbial experimental systems provide a platform to observe how networks of groups emerge to impact plant development. We applied selection pressure for microbiome enhancement of Brassica rapa biomass to examine adaptive bacterial group dynamics under soil nitrogen limitation. In the 9th and final generation of the experiment, selection pressure enhanced B. rapa seed yield and nitrogen use efficiency compared to our control treatment, with no effect between the random selection and control treatments. Aboveground biomass increased for both the high biomass selection and random selection plants. Soil bacterial diversity declined under high B. rapa biomass selection, suggesting a possible ecological filtering mechanism to remove bacterial taxa. Distinct sub-groups of interactions emerged among bacterial phyla such as Proteobacteria and Bacteroidetes in response to selection. Extended Local Similarity Analysis and NetShift indicated greater connectivity of the bacterial community, with more edges, shorter path lengths, and altered modularity through the course of selection for enhanced plant biomass. In contrast, bacterial communities under random selection and no selection showed less complex interaction profiles of bacterial taxa. These results suggest that group-level bacterial interactions could be modified to collectively shift microbiome functions impacting the growth of the host plant under soil nitrogen limitation.

Stable isotopes (δ13C, δ15N) and biomarkers as indicators of the hydrological regime of fens in a European east-west transect

Peatland degradation is tightly connected to hydrological changes and microbial metabolism. To better understand these metabolism processes, more information is needed on how microbial communities and substrate cycling are affected by changing hydrological regimes. These activities should be imprinted in stable isotope bulk values (δ ¹⁵N, δ ¹³C) due to specific isotopic fractionation by different microbial communities, their metabolic pathways and nutrient sources. We hypothesize that stable isotope values and microbial abundance are correlated and act as indicators of different hydrological regimes. We sampled an East-West transect across European fens in 14 areas and conducted a stable isotope (δ ¹³C, δ ¹⁵N) and membrane fatty acid (mFA) analysis. Within each area an undrained, drained and rewetted site was selected. Rewetted sites were separated based on when rewetting occurred. We found differences in the upper layers of all sites in microbial-derived mFAs and stable isotope values corresponding to hydrological regimes. The highest and lowest quantities of microbial-derived mFAs were measured in undrained and drained sites, respectively. Fungal-derived mFAs were especially lower in drained sites. Simultaneously, δ¹⁵N stable isotope values were highest in drained sites. In addition, stable isotope values and microbial-derived mFAs showed distinct depth trends. In undrained sites stable isotopes values slightly increased with depth. In drained sites, δ¹⁵N values decreased downwards, whereas δ¹³C values increased. Overall microbial-derived mFAs decreased with depth. These patterns presumably result from anoxic conditions and high peat recalcitrance in the deeper layers. In sites with short time of rewetting, the microbial-derived mFAs and stable isotope values were similar to values of drained sites, while with increasing rewetting time values shifted to those of undrained sites. We conclude that biomarkers indicate that stable isotope values reflect specific microbial metabolic processes, which differ with hydrological regimes, and thus could indicate both drainage and rewetting in fens.

Elevational shifts in foliar-soil δ15 N in the Hengduan Mountains and different potential mechanisms

The natural abundance of stable nitrogen isotopes (δ¹⁵ N) provides insights into the N dynamics of terrestrial ecosystems, the determination of which is considered an effective approach for gaining a better understanding ecosystem N cycling. However, there is currently little information available regarding the patterns and mechanisms underlying the variation in foliar-soil δ¹⁵ N among mountain ecosystems. In this study, we examined the determinants of foliar-soil δ¹⁵ N in association with N transportation rates along an elevational gradient in the Hengduan Mountains. Despite the relatively high levels of available N produced from high N fixation and mineralization, we detected the lowest levels of foliar δ¹⁵ N at 3500 m a.s.l., reflecting the stronger vegetation N limitation at medium high elevations. The enhanced vegetation N limitation was driven by the combined effects of higher microbial immobilization and inherent plant dynamic (the shifts of δ¹⁵ N in vegetation preference, including vegetation community) with changing climate along the elevational gradient. Unexpectedly, we established that soil δ¹⁵ N was characterized by an undulating rise and uncoupled correlation with foliar δ¹⁵ N with increasing elevation, thereby indicating that litter input might not be a prominent driver of soil δ¹⁵ N. Conversely, soil nitrification and denitrification were found to make a more pronounced contribution to the pattern of soil δ¹⁵ N along the elevational gradient. Collectively, our results serve to highlight the importance of microbial immobilization in soil N dynamics and provide novel insights that will contribute to enhancing our understanding of N cycling as indicated by foliar-soil δ¹⁵ N along elevational gradients.

Foxtail millet [Setaria italica (L.) Beauv.] over-accumulates ammonium under low nitrogen supply

Nitrogen (N) deficiency is a primary limiting factor for crop production worldwide. Previously, we reported root system architectural modifications of hydroponically cultured foxtail millet [Setaria italica (L.) Beauv.] to facilitate N translocation under N limitation. Here, we investigated foxtail millet for its shoot adaptation to low N in terms of internal N regulation under hydroponic culture. The results of this study revealed that the shoot N and nitrate (NO₃^-) concentrations significantly declined as compared to control (CK); however, the shoot over-accumulated ammonium (NH₄⁺) under low N (LN). N shortage resulted in down-regulation of expressions of SiPetA, SiccsA, SipsbA, SirpoB, SipsaA, SiatpA, Sirps16, and SiPEPC which, undermined chloroplast functioning and CO₂ assimilation for the provision of carbon skeleton. Carbon deficiency and lower activities of GS decelerated ammonia assimilation and led to over-accumulation of NH₄⁺ in the LN-shoot, as indicated by lower concentrations of total amino acids. Thus, enhanced GOGAT activity was to assimilate NH₄⁺ while, those of catalase (CAT), superoxide dismutase (SOD) and peroxidase (POD) were to scavenge reactive oxygen species (ROS) of NH₄⁺ toxicity framework. The weakened chloroplast factory eventually minimized photosynthesis and reduced dry mass of the LN shoot. Such regulation of N by the shoot, perhaps, resurrected physiological functions which maintained internal mineral status under nitrogen limitation in foxtail millet.

Free amino acids, carbon and nitrogen isotopic compositions responses to cadmium stress in two castor (Ricinus communis L.) species

Cadmium (Cd) toxicity induce various disturbances in metabolic processes and impair plant establishment. The composition of carbon and nitrogen stable isotopes (δ¹³C and δ¹⁵N) and free amino acids (FAAs) can reflect the response of plants to environmental stress. In the present study, a solution culture experiment was carried out, and the secretion characteristics of FAAs as well as δ¹³C and δ¹⁵N were evaluated as indicative of the functional performance of two castor species (Zibo-3 and Zibo-9) under various Cd concentrations stress (0, 1, 2, and 5 mg L^-1). The results indicated that: 1) The treatment of the plants with 5 mg L^-1 of a Cd solution resulted in a significant decline of biomasses by 22.4% and 11.6% in Zibo-3 and Zibo-9, respectively, relative to controls; additionally, the accumulation levels for Cd in Zibo-9 were higher than those in Zibo-3, thus Zibo-9 showed higher tolerance and enrichment ability to Cd. 2) The exposure of castor to Cd treatments results in significant modifications in individual FAAs, suggesting a differential sensitivity of each biosynthetic pathway to this stress; however, a positive correlation was found between the accumulation of total FAAs and Cd treatment dosages; higher proportion of asparagine and glutamate in total amino acids for Zibo-9, and abundant secretion of arginine in Cd treated Zibo-9 may be associated with the higher Cd-tolerance and Cd-accumulation in Zibo-9. 3) Cd stress increased leaf δ¹³C and δ¹⁵N values regardless of the castor species; δ¹³C and δ¹⁵N could be used as monitoring tools for heavy metal stress in plants.

Utility of carbon and nitrogen stable isotopes for inferring wild bee (Hymenoptera: Apoidea) use of adjacent foraging habitats

Isotope analysis has proven useful for understanding diets of animals that are difficult to track for extended periods. Bees are small yet highly mobile and often forage from multiple habitats. However, current methods of assessing diet are limited in scope. Efficient methods of tracking bee diets that integrate across life stages, distinguish habitat use, and are sensitive to taxonomic differences will inform conservation strategies. We evaluated the utility of stable isotope analysis for estimating contributions of adjacent habitats to bees’ diets. We also investigated taxonomic variation in bee and flower isotope composition. We measured natural abundance of carbon and nitrogen stable isotopes in two body regions from three wild bee genera, as well as in 25 species of flowers that likely comprised their diets. Bee ∂13C and ∂15N varied with habitat and taxonomic groups (conflated with month), but did not match spatial or seasonal trends in their food plants. Flower ∂13C was lowest in the forest and in April–June, as expected if driven by water availability. However, bee ∂13C was elevated in the spring, likely from overwintering nutritional stress or unpredictable food availability. Bumble bees (Bombus) were enriched in ∂15N compared to others, possibly reflecting differences in larval feeding. Bee diet mixing models had high variation and should be interpreted with caution. Models estimated similar habitat contributions to diets of spring Andrena and overwintered Bombus queens. Summer Bombus queens and workers were indistinguishable. Sweat bees (Halictus) were estimated to use comparatively more field flowers than others. Overall, taxon more strongly influenced isotope composition than either foraging habitat or month, likely because of associated differences in sociality and timing of annual activity. Future studies seeking to reveal bee diets by isotope analysis may gain better resolution in more isotopically distinct habitats, in conjunction with controlled feeding or isotope labeling experiments.

Changes in forest nitrogen cycling across deposition gradient revealed by δ15N in tree rings

Tree rings provide valuable insight into past environmental changes. This study aimed to evaluate perturbations in tree ring width (TRW) and δ¹⁵N alongside soil acidity and nutrient availability gradients caused by the contrasting legacy of air pollution (nitrogen [N] and sulphur [S] deposition) and tree species (European beech, Silver fir and Norway spruce). We found consistent declines of tree ring δ¹⁵N, which were temporarily unrelated to the changes in the TRW. The rate of δ¹⁵N change in tree rings was related to the contemporary foliar carbon (C) to phosphorus (P) ratio. This observation suggested that the long-term accumulation of ¹⁵N depleted N in tree rings, likely mediated by retained N from deposition, was restricted primarily to stands with currently higher P availability. The shifts observed in tree-ring δ¹⁵N and TRW suggest that acidic air pollution rather than changes in stand productivity determined alteration of N and C cycles. Stable N isotopes in tree rings provided helpful information on the trajectory of the N cycle over the last century with direct consequences for a better understanding of future interactions among N, P and C cycles in terrestrial ecosystems.

Nitrate Uptake and Use Efficiency: Pros and Cons of Chloride Interference in the Vegetable Crops

Over the past five decades, nitrogen (N) fertilization has been an essential tool for boosting crop productivity in agricultural systems. To avoid N pollution while preserving the crop yields and profit margins for farmers, the scientific community is searching for eco-sustainable strategies aimed at increasing plants' nitrogen use efficiency (NUE). The present article provides a refined definition of the NUE based on the two important physiological factors (N-uptake and N-utilization efficiency). The diverse molecular and physiological mechanisms underlying the processes of N assimilation, translocation, transport, accumulation, and reallocation are revisited and critically discussed. The review concludes by examining the N uptake and NUE in tandem with chloride stress and eustress, the latter being a new approach toward enhancing productivity and functional quality of the horticultural crops, particularly facilitated by soilless cultivation.

Divergent Response of the Supply Capacity and Turnover of Inorganic Nitrogen to Pitaya Cultivation in the Subtropical Karst Region of Southwest China

Determining the availability and supply capacity of soil inorganic nitrogen (N) can effectively guide the appropriate application of N fertilizers during crop cultivation. However, the mechanism underlying soil inorganic N production remains unknown for cash crops in karst regions. In this study, the rates of organic N mineralization to ammonium (NH4+) and NH4+ nitrification to nitrate (NO3−) were determined using a 15N tracing technique to evaluate the supply capacity of inorganic N in soils from woodland and pitaya plantations with different cultivation years (3, 9, and 15 years) in the subtropical karst region of China. The conversion of woodland to pitaya plantations significantly decreased the content of soil organic carbon (SOC), total N, calcium (Ca), and magnesium (Mg), along with the soil pH and cation-exchange capacity (CEC), but significantly increased the content of available potassium, available phosphorus, iron, and aluminum, in a more pronounced fashion with the increasing length of pitaya cultivation. The conversion of woodland to pitaya plantations has not significantly changed soil NH4+ and NO3− content, but this land use has resulted in divergent effects on mineralization and nitrification rates. Compared to woodland (5.49 mg N kg−1 d−1), pitaya cultivation significantly reduced the mineralization rate to 0.62–2.38 mg N kg−1 d−1. Conversely, the nitrification rate significantly increased from 4.71 mg N kg−1 d−1 in soil under woodland to 9.32 mg N kg−1 d−1 in soil under 3-year pitaya cultivation, but this rate decreased to 1.74 mg N kg−1 d−1 under 15-year cultivation. Furthermore, the mean residence time of inorganic N was significantly higher in long-term than in short-term pitaya plantations, indicating the decline in inorganic N turnover with the increasing length of pitaya cultivation. Taken together, long-term pitaya cultivation could significantly decrease the supply capacity and turnover of inorganic N in soil. The Ca, Mg, SOC, and total N content, as well as CEC, were significantly and positively related to the mineralization rate, but negatively related to the mean residence time of NH4+ and NO3−, suggesting that the incorporation of organic matter can accelerate the soil inorganic N supply and turnover for long-term pitaya plantation in subtropical regions.

Differed Adaptive Strategies to Nutrient Status between Native and Exotic Mangrove Species

To rapidly rehabilitate mangrove forests, exotic mangrove species characterized by high growth rates have been introduced in China, which would undoubtedly affect the nutrient status, nutrient acquisition and utilization strategies of mangrove plants, but the mechanism remains unclear. Qi’ao Island (a suburb of Zhuhai City) has the largest continuous exotic mangrove forests in China, where a mass collection of mangrove soils, plant tissues and tidewater was conducted. Ecological stoichiometric ratios and isotopic compositions were then analyzed to evaluate the ecosystem-scale nutrient status and compare the nutrient acquisition and utilization strategies of native Kandelia obovata (KO) and exotic Sonneratia apetala (SA) species. Soil and foliar C:N:P stoichiometries indicated that there is high P availability but N limitations, while further isotopic evidence indicated that native KO and exotic SA responded differently to the N limitation status. First, native KO seemed to prefer NO3−, while exotic SA preferred NH4+, according to the Δ15Nleaf–root (leaf–root δ15N difference) as well as the relationships between foliar δ15N and soil-extracted NH4+ δ15N, and between N and heavy metal contents. This suggested possible inter-specific competition between native KO and exotic SA, leading to different N species’ preferences to maximize resource utilization. Next, native KO likely adopted the “conservative” strategy to ensure survival with reduced investment in N-rich growth components but root systems leading to lower growth rates and higher N use efficiency (NUE) and intrinsic water use efficiency (iWUE), while exotic SA adopted the “aggressive” strategy to ensure fast growth with heavy investment in N-rich growth components, leading to rapid growth and lower NUE and iWUE, and showing signs of invasiveness. Further, native KO is more responsive to aggravated N limitation by enhancing NUE. This study will provide insights into the adaptation of different mangrove species to nutrient limitations and the risks associated with large-scale plantations of exotic mangrove species.

Lack of coordination between stomatal and vein traits provides functional benefits to the dioecious tropical tree Myrsine coriacea

Climate change will affect the distribution of many tropical plant species. However, the understanding of how dioecious tropical species cope with different environmental conditions is still limited. To address this issue, we investigated how secondary trait attributes in populations of the dioecious tropical tree Myrsine coriacea change along an altitudinal gradient. Eighty individual plants (40 male and 40 female) were selected among seven natural populations. Leaf variation in morphological and stomatal traits, and carbon and nitrogen isotopic compositions were analyzed. Female plants had greater isotopic leaf carbon composition (δ¹³ C) and nitrogen content than male plants, increasing their carboxylation capacity. Plants of both sexes had smaller stomata, greater water-use efficiency (greater δ¹³ C), and greater nitrogen isotopic composition (δ¹⁵ N) at higher altitudes. They also showed lower δ¹⁵ N and had greater carbon: nitrogen ratios at lower altitudes. There was a lack of coordination between stomatal and vein traits, which was compensated for by variation in specific leaf areas. This mechanism was essential for increasing plant performance under the limiting conditions found by the species at higher altitudes.

Evidence, causes, and consequences of declining nitrogen availability in terrestrial ecosystems

The productivity of ecosystems and their capacity to support life depends on access to reactive nitrogen (N). Over the past century, humans have more than doubled the global supply of reactive N through industrial and agricultural activities. However, long-term records demonstrate that N availability is declining in many regions of the world. Reactive N inputs are not evenly distributed, and global changes-including elevated atmospheric carbon dioxide (CO₂) levels and rising temperatures-are affecting ecosystem N supply relative to demand. Declining N availability is constraining primary productivity, contributing to lower leaf N concentrations, and reducing the quality of herbivore diets in many ecosystems. We outline the current state of knowledge about declining N availability and propose actions aimed at characterizing and responding to this emerging challenge.

How Does Crop Rotation Influence Soil Moisture, Mineral Nitrogen, and Nitrogen Use Efficiency?

Rice-wheat (RW) cropping systems are integral to global food security. Despite being practiced for decades, Chinese RW cropping systems often suffer from low productivity and poor nitrogen use efficiency (NUE), reflecting management approaches that are not well-contextualized to region and season. Here, we develop the best management guides for N fertilizer in RW systems that are designed to help raise the productivity, NUE, and environmental sustainability of winter wheat over the long term. 2-year field experiments were conducted with four N fertilizer rates (0, 135, 180, and 225 kg N ha-1), allowing contrasts of yields, soil moisture, and NUE of wheat in RW in the humid climates zones on the Jianghan Plain. We compared RW systems with soybean/maize dryland wheat (DW) systems that are similarly endemic to China: after soybean/maize is harvested, soils are often drier compared with moisture content following rice harvest. With high seasonal N application rates (180-225 kg N ha-1), wheat crop yields increased by 24% in RW which were greater than comparable yields of wheat in DW, mainly due to greater kernels per spike in the former. Across treatments and years, N accumulation in plant tissue and kernel dry matter of DW was higher than that in RW, although mean agronomic efficiency of nitrogen (AEN) and physiological efficiency of nitrogen (PEN) of RW systems were greater. As N application rates increased from 135 to 225 kg ha-1, AEN and PEN of DW decreased but changed little for RW. Soil ammonium N was much lower than that of nitrate N; changes in NH4 + and NO3 - as a consequence of increasing N fertilization were similar for RW and DW. We recommend that tactical application of N fertilizer continue seasonally until midgrain filling for both the DW and RW systems. At fertilization rates above 180 kg N ha-1, yield responses disappeared but nitrate leaching increased significantly, suggesting declining environmental sustainability above this N ceiling threshold. Collectively, this study elicits many functional and agronomic trade-offs between yields, NUE, and environmental sustainability as a function of N fertilization. Our results show that yield and NUE responses measured as part of crop rotations are both more robust and more variable when derived over multiple seasons, management conditions, and sites.

Home-Field Advantage of Litter Decomposition Faded 8 Years after Spruce Forest Clearcutting in Western Germany

Home-field advantage (HFA) encompasses all the processes leading to faster litter decomposition in the ‘home’ environment compared to that of ‘away’ environments. To determine the occurrence of HFA in a forest and adjacent clear-cut, we set up a reciprocal litter decomposition experiment within the forest and clear-cut for two soil types (Cambisols and Gleysols) in temperate Germany. The forest was dominated by Norway spruce (Picea abies), whereas forest regeneration of European Beech (Fagus sylvatica) after clearcutting was encouraged. Our observation that Norway spruce decomposed faster than European beech in 70-yr-old spruce forest was most likely related to specialized litter-soil interaction under existing spruce, leading to an HFA. Elevated soil moisture and temperature, and promoted litter N release, indicated the rapid change of soil-litter affinity of the original spruce forest even after a short-term regeneration following clearcutting, resulting in faster beech decomposition, particularly in moisture- and nutrient-deficient Cambisols. The divergence between forest and clear-cut in the Cambisol of their litter δ15N values beyond nine months implied litter N decomposition was only initially independent of soil and residual C status. We conclude that clearcutting modifies the litter-field affinity and helps promote the establishment or regeneration of European beech in this and similar forest mountain upland areas.