1
|
Cannarsa P, Lucarini V, Martinez P, Urbani C, Vancostenoble J. Analysis of a two-layer energy balance model: Long time behavior and greenhouse effect. Chaos 2023; 33:113111. [PMID: 37930684 DOI: 10.1063/5.0136673] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Accepted: 10/06/2023] [Indexed: 11/07/2023]
Abstract
We study a two-layer energy balance model that allows for vertical exchanges between a surface layer and the atmosphere. The evolution equations of the surface temperature and the atmospheric temperature are coupled by the emission of infrared radiation by one level, that emission being partly captured by the other layer, and the effect of all non-radiative vertical exchanges of energy. Therefore, an essential parameter is the absorptivity of the atmosphere, denoted εa. The value of εa depends critically on greenhouse gases: increasing concentrations of CO2 and CH4 lead to a more opaque atmosphere with higher values of ϵa. First, we prove that global existence of solutions of the system holds if and only if εa∈(0,2) and blow up in finite time occurs if εa>2. (Note that the physical range of values for εa is (0,1].) Next, we explain the long time dynamics for εa∈(0,2), and we prove that all solutions converge to some equilibrium point. Finally, motivated by the physical context, we study the dependence of the equilibrium points with respect to the involved parameters, and we prove, in particular, that the surface temperature increases monotonically with respect to εa. This is the key mathematical manifestation of the greenhouse effect.
Collapse
Affiliation(s)
- P Cannarsa
- Dipartimento degli Studi di Matematica, Università di Roma "Tor Vergata", Via della Ricerca Scientifica, 00133 Roma, Italy
| | - V Lucarini
- Department of Mathematics and Statistics, University of Reading, Reading RG6 6AX, United Kingdom and Centre for the Mathematics of Planet Earth, University of Reading, Reading RG6 6AX, United Kingdom
| | - P Martinez
- Institut de Mathématiques de Toulouse, UMR 5219, Université de Toulouse; CNRS UPS IMT, F-31062 Toulouse Cedex 9, France
| | - C Urbani
- Dipartimento di Scienze Tecnologiche e dell'Innovazione, Università Mercatorum, Piazza Mattei 10, 00186 Roma, Italy
| | - J Vancostenoble
- Institut de Mathématiques de Toulouse, UMR 5219, Université de Toulouse; CNRS UPS IMT, F-31062 Toulouse Cedex 9, France
| |
Collapse
|
2
|
Laor L, Sendi P, Martinez P, Totapally BR. Epidemiology and Outcomes of Cerebral Edema in Hospitalized Children. Pediatr Neurol 2023; 147:148-153. [PMID: 37619435 DOI: 10.1016/j.pediatrneurol.2023.07.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Revised: 06/11/2023] [Accepted: 07/26/2023] [Indexed: 08/26/2023]
Abstract
BACKGROUND Cerebral edema can be a consequence of multiple disease processes. Untreated cerebral edema can be fatal, and even with aggressive management, it can be devastating. The objective of this study was to describe the prevalence, underlying causes, and outcomes of cerebral edema in hospitalized children. METHODS A retrospective cross-sectional study using the 2016 Kids' Inpatient Database was performed. Children aged one month to 20 years were included. Sample weighting was employed to produce national estimates. Univariate analyses were used to compare those who died and survived. Multivariable logistic regression was performed to assess the influence of demographic variables and etiologic factors on mortality. RESULTS Cerebral edema was documented in 4903 children of 2,210,263 (2.2 of 1000) discharges. Among children with cerebral edema, males were 57%, white children were 47.9%, and adolescents were 48.9%. The three most common etiologies associated with cerebral edema in this cohort were stroke (21.7%), anoxic injury (21.4%), and central nervous system (CNS) malignancy (16%). The overall hospital mortality rate was 29.4%. The adjusted mortality rate was significantly higher when cerebral edema was associated with anoxic injury (84%). The mortality was lower when cerebral edema was associated with CNS malignancy (9.5%) or diabetic ketoacidosis (DKA) (4.3%). CONCLUSIONS Cerebral edema is uncommon in hospitalized children but has a high mortality. Stroke and anoxic brain injury are the two most common etiologies for cerebral edema in hospitalized children in the United States. Among all etiologies for cerebral edema in children, anoxic brain injury has the highest mortality, whereas DKA has the lowest mortality.
Collapse
Affiliation(s)
- Leanna Laor
- Division of Critical Care Medicine, Nicklaus Children's Hospital, Miami, Florida.
| | - Prithvi Sendi
- Division of Critical Care Medicine, Nicklaus Children's Hospital, Miami, Florida; Department of Pediatrics, Herbert Wertheim College of Medicine, Florida International University, Miami, Florida
| | - Paul Martinez
- Division of Critical Care Medicine, Nicklaus Children's Hospital, Miami, Florida; Department of Pediatrics, Herbert Wertheim College of Medicine, Florida International University, Miami, Florida
| | - Balagangadhar R Totapally
- Division of Critical Care Medicine, Nicklaus Children's Hospital, Miami, Florida; Department of Pediatrics, Herbert Wertheim College of Medicine, Florida International University, Miami, Florida
| |
Collapse
|
3
|
Breznau N, Rinke EM, Wuttke A, Nguyen HHV, Adem M, Adriaans J, Alvarez-Benjumea A, Andersen HK, Auer D, Azevedo F, Bahnsen O, Balzer D, Bauer G, Bauer PC, Baumann M, Baute S, Benoit V, Bernauer J, Berning C, Berthold A, Bethke FS, Biegert T, Blinzler K, Blumenberg JN, Bobzien L, Bohman A, Bol T, Bostic A, Brzozowska Z, Burgdorf K, Burger K, Busch KB, Carlos-Castillo J, Chan N, Christmann P, Connelly R, Czymara CS, Damian E, Ecker A, Edelmann A, Eger MA, Ellerbrock S, Forke A, Forster A, Gaasendam C, Gavras K, Gayle V, Gessler T, Gnambs T, Godefroidt A, Grömping M, Groß M, Gruber S, Gummer T, Hadjar A, Heisig JP, Hellmeier S, Heyne S, Hirsch M, Hjerm M, Hochman O, Hövermann A, Hunger S, Hunkler C, Huth N, Ignácz ZS, Jacobs L, Jacobsen J, Jaeger B, Jungkunz S, Jungmann N, Kauff M, Kleinert M, Klinger J, Kolb JP, Kołczyńska M, Kuk J, Kunißen K, Kurti Sinatra D, Langenkamp A, Lersch PM, Löbel LM, Lutscher P, Mader M, Madia JE, Malancu N, Maldonado L, Marahrens H, Martin N, Martinez P, Mayerl J, Mayorga OJ, McManus P, McWagner K, Meeusen C, Meierrieks D, Mellon J, Merhout F, Merk S, Meyer D, Micheli L, Mijs J, Moya C, Neunhoeffer M, Nüst D, Nygård O, Ochsenfeld F, Otte G, Pechenkina AO, Prosser C, Raes L, Ralston K, Ramos MR, Roets A, Rogers J, Ropers G, Samuel R, Sand G, Schachter A, Schaeffer M, Schieferdecker D, Schlueter E, Schmidt R, Schmidt KM, Schmidt-Catran A, Schmiedeberg C, Schneider J, Schoonvelde M, Schulte-Cloos J, Schumann S, Schunck R, Schupp J, Seuring J, Silber H, Sleegers W, Sonntag N, Staudt A, Steiber N, Steiner N, Sternberg S, Stiers D, Stojmenovska D, Storz N, Striessnig E, Stroppe AK, Teltemann J, Tibajev A, Tung B, Vagni G, Van Assche J, van der Linden M, van der Noll J, Van Hootegem A, Vogtenhuber S, Voicu B, Wagemans F, Wehl N, Werner H, Wiernik BM, Winter F, Wolf C, Yamada Y, Zhang N, Ziller C, Zins S, Żółtak T. Observing many researchers using the same data and hypothesis reveals a hidden universe of uncertainty. Proc Natl Acad Sci U S A 2022; 119:e2203150119. [PMID: 36306328 PMCID: PMC9636921 DOI: 10.1073/pnas.2203150119] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2022] [Accepted: 08/22/2022] [Indexed: 11/25/2022] Open
Abstract
This study explores how researchers' analytical choices affect the reliability of scientific findings. Most discussions of reliability problems in science focus on systematic biases. We broaden the lens to emphasize the idiosyncrasy of conscious and unconscious decisions that researchers make during data analysis. We coordinated 161 researchers in 73 research teams and observed their research decisions as they used the same data to independently test the same prominent social science hypothesis: that greater immigration reduces support for social policies among the public. In this typical case of social science research, research teams reported both widely diverging numerical findings and substantive conclusions despite identical start conditions. Researchers' expertise, prior beliefs, and expectations barely predict the wide variation in research outcomes. More than 95% of the total variance in numerical results remains unexplained even after qualitative coding of all identifiable decisions in each team's workflow. This reveals a universe of uncertainty that remains hidden when considering a single study in isolation. The idiosyncratic nature of how researchers' results and conclusions varied is a previously underappreciated explanation for why many scientific hypotheses remain contested. These results call for greater epistemic humility and clarity in reporting scientific findings.
Collapse
Affiliation(s)
- Nate Breznau
- Research Center on Inequality and Social Policy (SOCIUM), University of Bremen, Bremen, 28359, Germany
| | - Eike Mark Rinke
- School of Politics and International Studies, University of Leeds, Leeds, LS2 9JT, United Kingdom
| | - Alexander Wuttke
- Mannheim Centre for European Social Research, University of Mannheim, 68131 Mannheim, Germany
- Department of Political Science, Ludwig Maximilian University, 80539 Munich, Germany
| | - Hung H. V. Nguyen
- Research Center on Inequality and Social Policy (SOCIUM), University of Bremen, Bremen, 28359, Germany
- Bremen International Graduate School of Social Sciences, 28359 Bremen, Germany
| | - Muna Adem
- Department of Sociology, Indiana University, Bloomington, IN 47405
| | - Jule Adriaans
- Socio-Economic Panel Study (SOEP), German Institute for Economic Research (DIW), 10117 Berlin, Germany
| | - Amalia Alvarez-Benjumea
- Mechanisms of Normative Change, Max Planck Institute for Research on Collective Goods, 53113 Bonn, Germany
| | - Henrik K. Andersen
- Institute of Sociology, Chemnitz University of Technology, 09126 Chemnitz, Germany
| | - Daniel Auer
- Mannheim Centre for European Social Research, University of Mannheim, 68131 Mannheim, Germany
| | - Flavio Azevedo
- Department of Psychology, University of Cambridge, Cambridge, CB23RQ, United Kingdom
| | - Oke Bahnsen
- School of Social Sciences, University of Mannheim, 68159 Mannheim, Germany
| | - Dave Balzer
- Institute of Sociology, Johannes Gutenberg University Mainz, 55128 Mainz, Germany
| | - Gerrit Bauer
- Department of Sociology, Ludwig Maximilian University, 80801 Munich, Germany
| | - Paul C. Bauer
- Mannheim Centre for European Social Research, University of Mannheim, 68131 Mannheim, Germany
| | - Markus Baumann
- Heidelberg University, 69117 Heidelberg, Germany
- Institute for Political Science, Goethe University Frankfurt, 60323 Frankfurt, Germany
| | - Sharon Baute
- Comparative Political Economy, University of Konstanz, 78457 Konstanz, Germany
| | - Verena Benoit
- Department of Political Science, Ludwig Maximilian University, 80539 Munich, Germany
- Faculty of Social Sciences, Economics, and Business Administration, University of Bamberg, 96052 Bamberg, Germany
| | - Julian Bernauer
- Mannheim Centre for European Social Research, University of Mannheim, 68131 Mannheim, Germany
| | - Carl Berning
- Institute for Political Science, Johannes Gutenberg University Mainz, 55099 Mainz, Germany
| | - Anna Berthold
- Faculty of Social Sciences, Economics, and Business Administration, University of Bamberg, 96052 Bamberg, Germany
| | - Felix S. Bethke
- Research Department on Intrastate Conflict, Peace Research Institute Frankfurt, 60329 Frankfurt, Germany
| | - Thomas Biegert
- Department of Social Policy, London School of Economics and Political Science, London, WC2A 2AE, United Kingdom
| | - Katharina Blinzler
- Survey Data Curation, Leibniz Institute for the Social Sciences (GESIS), 50667 Cologne, Germany
| | - Johannes N. Blumenberg
- Knowledge Exchange and Outreach, Leibniz Institute for the Social Sciences (GESIS), 68159 Mannheim, Germany
| | - Licia Bobzien
- Jacques Delors Centre, Hertie School, 10117 Berlin, Germany
| | - Andrea Bohman
- Department of Sociology, Umeå University, 90187 Umeå, Sweden
| | - Thijs Bol
- Social Research Institute, Institute of Education, University College London, London, WC1H 0AL, United Kingdom
- Department of Sociology, University of Amsterdam, 1001 Amsterdam, The Netherlands
| | - Amie Bostic
- Department of Sociology, The University of Texas Rio Grande Valley, Brownsville, TX 78520
| | - Zuzanna Brzozowska
- Vienna Institute of Demography, Austrian Academy of Sciences, 1030 Vienna, Austria
- Austrian National Public Health Institute, Gesundheit Österreich (GÖG), 1030 Vienna, Austria
| | - Katharina Burgdorf
- School of Social Sciences, University of Mannheim, 68159 Mannheim, Germany
| | - Kaspar Burger
- Social Research Institute, Institute of Education, University College London, London, WC1H 0AL, United Kingdom
- Department of Sociology, University of Zurich, 8050 Zurich, Switzerland
- Jacobs Center for Productive Youth, University of Zurich, 8050 Zurich, Switzerland
| | | | - Juan Carlos-Castillo
- Department of Sociology, University of Chile, Santiago, 7800284, Chile
- Center for Social Conflict and Cohesion Studies (COES), Pontificia Universidad Católica de Chile, Santiago, 8331150, Chile
| | - Nathan Chan
- Department of Political Science and International Relations, Loyola Marymount University, Los Angeles, CA 90045
| | - Pablo Christmann
- Data and Research on Society, Leibniz Institute for the Social Sciences, 68159 Mannheim, Germany
| | - Roxanne Connelly
- School of Social and Political Science, University of Edinburgh, Edinburgh, EH8 9LD, United Kingdom
| | | | - Elena Damian
- Lifestyle and Chronic Diseases, Epidemiology and Public Health, Sciensano, 1000 Brussels, Belgium
| | - Alejandro Ecker
- Mannheim Centre for European Social Research, University of Mannheim, 68131 Mannheim, Germany
| | | | - Maureen A. Eger
- Department of Sociology, Umeå University, 90187 Umeå, Sweden
| | - Simon Ellerbrock
- Mannheim Centre for European Social Research, University of Mannheim, 68131 Mannheim, Germany
- School of Social Sciences, University of Mannheim, 68159 Mannheim, Germany
| | | | - Andrea Forster
- Empirical Educational and Higher Education Research, Freie Universität Berlin, 14195 Berlin, Germany
| | - Chris Gaasendam
- Department of Sociology, Center for Sociological Research, KU Leuven, 3000 Leuven, Belgium
| | - Konstantin Gavras
- School of Social Sciences, University of Mannheim, 68159 Mannheim, Germany
| | - Vernon Gayle
- School of Social and Political Science, University of Edinburgh, Edinburgh, EH8 9LD, United Kingdom
| | - Theresa Gessler
- Kulturwissenschaftliche Fakultät, European University Viadrina, 15230 Frankfurt (Oder), Germany
| | - Timo Gnambs
- Educational Measurement, Leibniz Institute for Educational Trajectories, 96047 Bamberg, Germany
| | - Amélie Godefroidt
- Centre for Research on Peace and Development, KU Leuven, 3000 Leuven, Belgium
| | - Max Grömping
- School of Government and International Relations, Griffith University, Nathan, QLD, 4111, Australia
| | - Martin Groß
- Department of Sociology, University of Tübingen, 72074 Tübingen, Germany
| | - Stefan Gruber
- Max Planck Institute for Social Law and Social Policy, 80799 Munich, Germany
| | - Tobias Gummer
- Data and Research on Society, Leibniz Institute for the Social Sciences, 68159 Mannheim, Germany
| | - Andreas Hadjar
- University of Luxembourg, 4365 Esch-sur-Alzette, Luxembourg
- Wirtschafts- und Sozialwissenschaftliches Institut (WSI), Hans Böckler Foundation, 40474 Düsseldorf, Germany
- University of Fribourg, 1700 Fribourg, Switzerland
- Department of Social Sciences, University of Luxembourg, 4366 Esch-sur-Alzette, Luxembourg
| | - Jan Paul Heisig
- University of Groningen, 9712 CP Groningen,The Netherlands
- Research Group "Health and Social Inequality", Berlin Social Science Center (WZB), 10785 Berlin, Germany
| | - Sebastian Hellmeier
- Transformations of Democracy Unit, Berlin Social Science Center (WZB), 10785 Berlin, Germany
| | - Stefanie Heyne
- Mannheim Centre for European Social Research, University of Mannheim, 68131 Mannheim, Germany
| | - Magdalena Hirsch
- Research Unit Migration, Integration, Transnationalization, Berlin Social Science Center (WZB), 10785 Berlin, Germany
| | - Mikael Hjerm
- Department of Sociology, Umeå University, 90187 Umeå, Sweden
| | - Oshrat Hochman
- Data and Research on Society, Leibniz Institute for the Social Sciences, 68159 Mannheim, Germany
| | - Andreas Hövermann
- Wirtschafts- und Sozialwissenschaftliches Institut (WSI), Hans Böckler Foundation, 40474 Düsseldorf, Germany
- German Socio-Economic Panel Survey, 10117 Berlin, Germany
| | - Sophia Hunger
- Center for Civil Society Research, Berlin Social Science Center, 10785 Berlin, Germany
| | - Christian Hunkler
- Berlin Institute for Integration and Migration Research (BIM), Humboldt University Berlin, 10099 Berlin, Germany
| | - Nora Huth
- School of Human and Social Sciences, University of Wuppertal, 42119 Wuppertal, Germany
| | - Zsófia S. Ignácz
- Institute of Sociology, Goethe University Frankfurt, 60323 Frankfurt, Germany
| | - Laura Jacobs
- Department of Political Science, Université Libre de Bruxelles, 1050 Bruxelles, Belgium
| | - Jannes Jacobsen
- Zeppelin University, 88045 Friedrichshafen, Germany
- Cluster "Data-Methods-Monitoring", German Center for Integration and Migration Research (DeZIM),10117 Berlin, Germany
| | - Bastian Jaeger
- Department of Social Psychology, Tilburg University, 5037AB Tilburg, The Netherlands
| | - Sebastian Jungkunz
- Institute for Socio-Economics, University of Duisburg-Essen, 47057 Duisburg, Germany
- Institute of Political Science, University of Münster, 48149 Münster, Germany
- Chair of Political Sociology, University of Bamberg, 96052 Bamberg, Germany
| | - Nils Jungmann
- Survey Data Curation, Leibniz Institute for the Social Sciences (GESIS), 50667 Cologne, Germany
| | - Mathias Kauff
- Department of Psychology, Medical School Hamburg, 20457 Hamburg, Germany
| | - Manuel Kleinert
- Institute of Sociology, Justus Liebig University of Giessen, 35394 Giessen, Germany
| | - Julia Klinger
- Institute of Sociology and Social Psychology, University of Cologne, 50931 Cologne, Germany
| | - Jan-Philipp Kolb
- Federal Statistics Office Germany, Destatis, 65189 Wiesbaden, Germany
| | - Marta Kołczyńska
- Department of Research on Social and Institutional Transformations, Institute of Political Studies of the Polish Academy of Sciences, 00-625 Warsaw, Poland
| | - John Kuk
- Department of Political Science, University of Oklahoma, Norman, OK 73019
| | - Katharina Kunißen
- Institute of Sociology, Johannes Gutenberg University Mainz, 55128 Mainz, Germany
| | | | | | - Philipp M. Lersch
- Socio-Economic Panel Study (SOEP), German Institute for Economic Research (DIW), 10117 Berlin, Germany
- Department of Social Sciences, Humboldt University Berlin, 10099 Berlin, Germany
| | - Lea-Maria Löbel
- Socio-Economic Panel Study (SOEP), German Institute for Economic Research (DIW), 10117 Berlin, Germany
| | - Philipp Lutscher
- Department of Political Science, University of Oslo, 0851 Oslo, Norway
| | - Matthias Mader
- Department of Politics and Public Administration, University of Konstanz, 78457 Konstanz, Germany
| | - Joan E. Madia
- Department of Sociology, Nuffield College, University of Oxford, Oxford, OX1 1JD, United Kingdom
- Institute for the Evaluation of Public Policies, Fondazione Bruno Kessler, 38122 Trento, Italy
| | - Natalia Malancu
- The Institute of Citizenship Studies (InCite), University of Geneva, 1205 Geneva, Switzerland
| | - Luis Maldonado
- Instituto de Sociologia, Pontifical Catholic University of Chile, Santiago, 7820436, Chile
| | - Helge Marahrens
- Department of Sociology, Indiana University, Bloomington, IN 47405
| | - Nicole Martin
- Department of Politics, University of Manchester, Manchester, M19 2JS, United Kingdom
| | - Paul Martinez
- Department of Institutional Research, Western Governors University, Salt Lake City, UT 84107
| | - Jochen Mayerl
- Institute of Sociology, Chemnitz University of Technology, 09126 Chemnitz, Germany
| | - Oscar J. Mayorga
- Department of Sociology, University of California, Los Angeles, CA 90095
| | - Patricia McManus
- Department of Sociology, Indiana University, Bloomington, IN 47405
| | - Kyle McWagner
- Department of Political Science, The University of California, Irvine, CA 92617
| | - Cecil Meeusen
- Department of Sociology, Center for Sociological Research, KU Leuven, 3000 Leuven, Belgium
| | - Daniel Meierrieks
- Research Unit Migration, Integration, Transnationalization, Berlin Social Science Center (WZB), 10785 Berlin, Germany
| | - Jonathan Mellon
- Department of Politics, University of Manchester, Manchester, M19 2JS, United Kingdom
| | - Friedolin Merhout
- Department of Sociology and Centre for Social Data Science, University of Copenhagen, 1353 Copenhagen, Denmark
| | - Samuel Merk
- Department of School Development, University of Education Karlsruhe, 76133 Karlsruhe, Germany
| | - Daniel Meyer
- Department of Education and Social Sciences, University of Cologne, 50931 Cologne, Germany
| | - Leticia Micheli
- Department of Psychology III, Julius-Maximilians University Würzburg, 97070 Würzburg, Germany
| | - Jonathan Mijs
- Department of Sociology, Boston University, Boston, MA 02215
| | - Cristóbal Moya
- Faculty of Sociology, Bielefeld University, 33615 Bielefeld, Germany
| | - Marcel Neunhoeffer
- School of Social Sciences, University of Mannheim, 68159 Mannheim, Germany
| | - Daniel Nüst
- Department of Geosciences, University of Münster, 49149 Münster, Germany
| | - Olav Nygård
- Division of Migration, Ethnicity and Society (REMESO), Linköping University, 60174 Linköping, Sweden
| | - Fabian Ochsenfeld
- Administrative Headquarters, Max Planck Society, 80539 Berlin, Germany
| | - Gunnar Otte
- Institute of Sociology, Johannes Gutenberg University Mainz, 55128 Mainz, Germany
| | | | - Christopher Prosser
- Department of Politics, International Relations and Philosophy, Royal Holloway University of London, London, TW20 0EX, United Kingdom
| | - Louis Raes
- Department of Economics, Tilburg University, 5037AB Tilburg, The Netherlands
| | - Kevin Ralston
- School of Social and Political Science, University of Edinburgh, Edinburgh, EH8 9LD, United Kingdom
| | - Miguel R. Ramos
- Department of Social Policy, Sociology and Criminology, University of Birmingham, Birmingham, B15 2TT, United Kingdom
| | - Arne Roets
- Department of Developmental, Personality and Social Psychology, Ghent University, 9000 Ghent, Belgium
| | - Jonathan Rogers
- Division of Social Science, New York University Abu Dhabi, Abu Dhabi, 10276, United Arab Emirates
| | - Guido Ropers
- School of Social Sciences, University of Mannheim, 68159 Mannheim, Germany
| | - Robin Samuel
- University of Luxembourg, 4365 Esch-sur-Alzette, Luxembourg
- Department of Social Sciences, University of Luxembourg, 4366 Esch-sur-Alzette, Luxembourg
| | - Gregor Sand
- Max Planck Institute for Social Law and Social Policy, 80799 Munich, Germany
| | - Ariela Schachter
- Department of Sociology, Washington University in St. Louis, St. Louis, MO 63130
| | - Merlin Schaeffer
- Department of Sociology, University of Copenhagen, 1353 Copenhagen, Denmark
| | - David Schieferdecker
- Institute for Media and Communication Studies, Freie Universität Berlin, 14195 Berlin, Germany
| | - Elmar Schlueter
- Institute of Sociology, Justus Liebig University of Giessen, 35394 Giessen, Germany
| | - Regine Schmidt
- Faculty of Social Sciences, Economics, and Business Administration, University of Bamberg, 96052 Bamberg, Germany
| | - Katja M. Schmidt
- Socio-Economic Panel Study (SOEP), German Institute for Economic Research (DIW), 10117 Berlin, Germany
| | | | | | - Jürgen Schneider
- Tübingen School of Education, University of Tübingen, 72074 Tübingen, Germany
| | - Martijn Schoonvelde
- University College Dublin, Dublin 4, Ireland
- Department of European Languages and Cultures, University of Groningen, 9712 EK Groningen, The Netherlands
| | - Julia Schulte-Cloos
- Robert Schuman Center for Advanced Studies, European University Institute, 50133 Florence, Italy
| | - Sandy Schumann
- Department of Security and Crime Science, University College London, London,WC1E 6BT, United Kingdom
| | - Reinhard Schunck
- School of Human and Social Sciences, University of Wuppertal, 42119 Wuppertal, Germany
| | - Jürgen Schupp
- Socio-Economic Panel Study (SOEP), German Institute for Economic Research (DIW), 10117 Berlin, Germany
| | - Julian Seuring
- Department of Migration, Leibniz Institute for Educational Trajectories, 96047 Bamberg, Germany
| | - Henning Silber
- Department of Survey Design and Methodology, Leibniz Institute for the Social Sciences (GESIS), 68159 Mannheim, Germany
| | - Willem Sleegers
- Department of Social Psychology, Tilburg University, 5037AB Tilburg, The Netherlands
| | - Nico Sonntag
- Institute of Sociology, Johannes Gutenberg University Mainz, 55128 Mainz, Germany
| | | | - Nadia Steiber
- Department of Sociology, University of Vienna, 1090 Vienna, Austria
| | - Nils Steiner
- Institute for Political Science, Johannes Gutenberg University Mainz, 55099 Mainz, Germany
| | | | - Dieter Stiers
- Center for Political Science Research, KU Leuven, 3000 Leuven, Belgium
| | - Dragana Stojmenovska
- Department of Sociology, University of Amsterdam, 1001 Amsterdam, The Netherlands
| | - Nora Storz
- Interdisciplinary Social Science, Utrecht University, 3584 Utrecht, The Netherlands
| | - Erich Striessnig
- Department of Demography, University of Vienna, 1010 Vienna, Austria
| | - Anne-Kathrin Stroppe
- Survey Data Curation, Leibniz Institute for the Social Sciences (GESIS), 50667 Cologne, Germany
| | - Janna Teltemann
- Institute for Social Sciences, University of Hildesheim, 31141 Hildesheim, Germany
| | - Andrey Tibajev
- Division of Migration, Ethnicity and Society (REMESO), Linköping University, 60174 Linköping, Sweden
| | - Brian Tung
- Department of Sociology, Washington University in St. Louis, St. Louis, MO 63130
| | - Giacomo Vagni
- Social Research Institute, Institute of Education, University College London, London, WC1H 0AL, United Kingdom
| | - Jasper Van Assche
- Department of Developmental, Personality and Social Psychology, Ghent University, 9000 Ghent, Belgium
- Center for Social and Cultural Psychology, Université Libre de Bruxelles, 1050 Brussels, Belgium
| | - Meta van der Linden
- Interdisciplinary Social Science, Utrecht University, 3584 Utrecht, The Netherlands
| | | | - Arno Van Hootegem
- Department of Sociology, Center for Sociological Research, KU Leuven, 3000 Leuven, Belgium
| | - Stefan Vogtenhuber
- Education and Employment, Institute for Advanced Studies, University of Vienna, Vienna, 1080 Austria
| | - Bogdan Voicu
- Research Institute for Quality of Life, Romanian Academy, 010071 Bucharest, Romania
- Department of Sociology, Lucian Blaga University of Sibiu, 550024 Sibiu, Romania
| | - Fieke Wagemans
- Netherlands Institute for Social Research, 2500 BD The Hague, the Netherlands
- Policy Perspectives, Citizen Perspectives, and Behaviors, Netherlands Institute for Social Research, 2594 The Hague, The Netherlands
| | - Nadja Wehl
- Research Cluster "The Politics of Inequality", University of Konstanz, 78464 Konstanz, Germany
| | - Hannah Werner
- Center for Political Science Research, KU Leuven, 3000 Leuven, Belgium
| | | | - Fabian Winter
- Mechanisms of Normative Change, Max Planck Institute for Research on Collective Goods, 53113 Bonn, Germany
| | - Christof Wolf
- Mannheim Centre for European Social Research, University of Mannheim, 68131 Mannheim, Germany
- School of Social Sciences, University of Mannheim, 68159 Mannheim, Germany
- President, Leibniz Institute for the Social Sciences (GESIS), 68159 Mannheim, Germany
| | - Yuki Yamada
- Faculty of Arts and Science, Kyushu University, Fukuoka, 819-0395, Japan
| | - Nan Zhang
- Mannheim Centre for European Social Research, University of Mannheim, 68131 Mannheim, Germany
| | - Conrad Ziller
- Institute for Socio-Economics, University of Duisburg-Essen, 47057 Duisburg, Germany
- Department of Political Science, University of Duisburg-Essen, 47057 Duisburg, Germany
| | - Stefan Zins
- Institute for Employment Research, Federal Employment Agency, 90478 Nuremberg, Germany
| | - Tomasz Żółtak
- Department of Research on Social and Institutional Transformations, Institute of Political Studies of the Polish Academy of Sciences, 00-625 Warsaw, Poland
| |
Collapse
|
4
|
Martinez P, Ballarin L, Ereskovsky AV, Gazave E, Hobmayer B, Manni L, Rottinger E, Sprecher SG, Tiozzo S, Varela-Coelho A, Rinkevich B. Articulating the "stem cell niche" paradigm through the lens of non-model aquatic invertebrates. BMC Biol 2022; 20:23. [PMID: 35057814 PMCID: PMC8781081 DOI: 10.1186/s12915-022-01230-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Accepted: 01/12/2022] [Indexed: 12/13/2022] Open
Abstract
Stem cells (SCs) in vertebrates typically reside in "stem cell niches" (SCNs), morphologically restricted tissue microenvironments that are important for SC survival and proliferation. SCNs are broadly defined by properties including physical location, but in contrast to vertebrates and other "model" organisms, aquatic invertebrate SCs do not have clearly documented niche outlines or properties. Life strategies such as regeneration or asexual reproduction may have conditioned the niche architectural variability in aquatic or marine animal groups. By both establishing the invertebrates SCNs as independent types, yet allowing inclusiveness among them, the comparative analysis will allow the future functional characterization of SCNs.
Collapse
Affiliation(s)
- P Martinez
- Departament de Genètica, Microbiologia i Estadística, Universitat de Barcelona, Av. Diagonal 643, 08028, Barcelona, Spain.
- Institut Català de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.
| | - L Ballarin
- Department of Biology, University of Padova, Via U. Bassi 58/B, 35100, Padova, Italy
| | - A V Ereskovsky
- Aix Marseille University, Avignon Université, CNRS, IRD, IMBE, Marseille, France
- St. Petersburg State University, Biological Faculty, Universitetskaya emb. 7/9, St. Petersburg, 199034, Russia
- N. K. Koltzov Institute of Developmental Biology, Russian Academy of Sciences, Vavilova Street 26, Moscow, 119334, Russia
| | - E Gazave
- Université de Paris, CNRS, Institut Jacques Monod, F-75006, Paris, France
| | - B Hobmayer
- Department of Zoology and Center of Molecular Biosciences, University of Innsbruck, Technikerstr. 25, 6020, Innsbruck, Austria
| | - L Manni
- Department of Biology, University of Padova, Via U. Bassi 58/B, 35100, Padova, Italy
| | - E Rottinger
- Université Côte d'Azur, CNRS, INSERM, Institute for Research on Cancer and Aging, Nice (IRCAN), Nice, France
- Université Côte d'Azur, Federative Research Institute - Marine Resources (IFR MARRES), Nice, France
| | - S G Sprecher
- Department of Biology, University of Fribourg, Chemin du Musee 10, 1700, Fribourg, Switzerland
| | - S Tiozzo
- Sorbonne Université, CNRS, Laboratoire de Biologie du Développement de Villefranche-sur-mer (LBDV), Paris, France
| | - A Varela-Coelho
- ITQB NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Av. da República, 2780-157, Oeiras, Portugal
| | - B Rinkevich
- Israel Oceanography and Limnological Research, National Institute of Oceanography, Tel Shikmona, P.O. Box 8030, 31080, Haifa, Israel.
| |
Collapse
|
5
|
Grolleau A, Dorchies F, Jourdain N, Ta Phuoc K, Gautier J, Mahieu B, Renaudin P, Recoules V, Martinez P, Lecherbourg L. Femtosecond Resolution of the Nonballistic Electron Energy Transport in Warm Dense Copper. Phys Rev Lett 2021; 127:275901. [PMID: 35061440 DOI: 10.1103/physrevlett.127.275901] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Revised: 11/03/2021] [Accepted: 12/14/2021] [Indexed: 06/14/2023]
Abstract
The ultrafast electron energy transport is investigated in laser-heated warm dense copper in a high flux regime (2.5±0.7×10^{13} W/cm^{2} absorbed). The dynamics of the electron temperature is retrieved from femtosecond time-resolved x-ray absorption near-edge spectroscopy near the Cu L3 edge. A characteristic time of ∼1 ps is observed for the increase in the average temperature in a 100 nm thick sample. Data are well reproduced by two-temperature hydrodynamic simulations, which support energy transport dominated by thermal conduction rather than ballistic electrons.
Collapse
Affiliation(s)
- A Grolleau
- CEA, DAM, DIF, F-91297 Arpajon, France
- Université Bordeaux, CNRS, CEA, CELIA, UMR 5107, F-33400 Talence, France
| | - F Dorchies
- Université Bordeaux, CNRS, CEA, CELIA, UMR 5107, F-33400 Talence, France
| | - N Jourdain
- CEA, DAM, DIF, F-91297 Arpajon, France
- Université Bordeaux, CNRS, CEA, CELIA, UMR 5107, F-33400 Talence, France
| | - K Ta Phuoc
- LOA, ENSTA, CNRS UMR 7639, Institut Polytechnique de Paris, F-91761 Palaiseau, France
| | - J Gautier
- LOA, ENSTA, CNRS UMR 7639, Institut Polytechnique de Paris, F-91761 Palaiseau, France
| | - B Mahieu
- LOA, ENSTA, CNRS UMR 7639, Institut Polytechnique de Paris, F-91761 Palaiseau, France
| | | | | | - P Martinez
- Université Bordeaux, CNRS, CEA, CELIA, UMR 5107, F-33400 Talence, France
| | - L Lecherbourg
- CEA, DAM, DIF, F-91297 Arpajon, France
- LOA, ENSTA, CNRS UMR 7639, Institut Polytechnique de Paris, F-91761 Palaiseau, France
| |
Collapse
|
6
|
Ness-Cochinwala M, Proaño JS, Bernstein JN, Martinez P, Ladd H, Totapally B. A Case of a Lethal Diquat Ingestion in a Toddler. J Emerg Med 2021; 62:e16-e19. [PMID: 34836733 DOI: 10.1016/j.jemermed.2021.10.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Revised: 08/10/2021] [Accepted: 10/12/2021] [Indexed: 10/19/2022]
Abstract
BACKGROUND Diquat is an herbicide that may cause rapid and profound systemic toxicity. It can cause multisystem organ failure, primarily via its effects on the gastrointestinal, renal, cardiovascular, and central nervous systems. Case fatality rates as high as 43% have been reported. There is a paucity of pediatric literature on diquat poisoning, and in this article, we will discuss an unfortunate pediatric case that highlights the severity of diquat toxicity. CASE REPORT We present the case of a child who ingested diquat, which led to multisystem organ failure and death. WHY SHOULD AN EMERGENCY PHYSICIAN BE AWARE OF THIS?: Clinicians should be aware of this herbicide's potential for significant morbidity and mortality, especially in children, in whom small quantities can be lethal. It is important that emergency physicians are aware of the significant toxicity of diquat and provide early gastric decontamination, as it is the only proven therapeutic strategy.
Collapse
Affiliation(s)
- Manette Ness-Cochinwala
- Division of Critical Care Medicine, Nicklaus Children's Hospital, Miami, Florida; Herbert Wertheim College of Medicine, Florida International University, Miami, Florida
| | - Juan Sebastian Proaño
- Division of Critical Care Medicine, Nicklaus Children's Hospital, Miami, Florida; Herbert Wertheim College of Medicine, Florida International University, Miami, Florida
| | - Jeffery N Bernstein
- Florida Poison Information Center, Miami, Florida; Jackson Memorial Hospital, Miami, Florida; University of Miami/Jackson Residency in Emergency Medicine, Miami, Florida
| | - Paul Martinez
- Division of Critical Care Medicine, Nicklaus Children's Hospital, Miami, Florida; Herbert Wertheim College of Medicine, Florida International University, Miami, Florida
| | - Hugh Ladd
- Division of Critical Care Medicine, Nicklaus Children's Hospital, Miami, Florida; Herbert Wertheim College of Medicine, Florida International University, Miami, Florida
| | - Balagangadhar Totapally
- Division of Critical Care Medicine, Nicklaus Children's Hospital, Miami, Florida; Herbert Wertheim College of Medicine, Florida International University, Miami, Florida
| |
Collapse
|
7
|
Nussbaumer-Streit B, Ellen M, Klerings I, Sfetcu R, Riva N, Mahmić-Kaknjo M, Poulentzas G, Martinez P, Baladia E, Ziganshina LE, Marqués ME, Aguilar L, Kassianos AP, Frampton G, Silva AG, Affengruber L, Spjker R, Thomas J, Berg RC, Kontogiani M, Sousa M, Kontogiorgis C, Gartlehner G. Resource use during systematic review production varies widely: a scoping review. J Clin Epidemiol 2021; 139:287-296. [PMID: 34091021 DOI: 10.1016/j.jclinepi.2021.05.019] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Revised: 05/21/2021] [Accepted: 05/26/2021] [Indexed: 12/25/2022]
Abstract
OBJECTIVE We aimed to map the resource use during systematic review (SR) production and reasons why steps of the SR production are resource intensive to discover where the largest gain in improving efficiency might be possible. STUDY DESIGN AND SETTING We conducted a scoping review. An information specialist searched multiple databases (e.g., Ovid MEDLINE, Scopus) and implemented citation-based and grey literature searching. We employed dual and independent screenings of records at the title/abstract and full-text levels and data extraction. RESULTS We included 34 studies. Thirty-two reported on the resource use-mostly time; four described reasons why steps of the review process are resource intensive. Study selection, data extraction, and critical appraisal seem to be very resource intensive, while protocol development, literature search, or study retrieval take less time. Project management and administration required a large proportion of SR production time. Lack of experience, domain knowledge, use of collaborative and SR-tailored software, and good communication and management can be reasons why SR steps are resource intensive. CONCLUSION Resource use during SR production varies widely. Areas with the largest resource use are administration and project management, study selection, data extraction, and critical appraisal of studies.
Collapse
Affiliation(s)
| | - M Ellen
- Department of Health Systems Management, Guilford Glazer Faculty of Business and Management and Faculty of Health Sciences, Ben-Gurion University of the Negev, Israel; Institute of Health Policy Management and Evaluation, Dalla Lana School Of Public Health, University of Toronto, Canada
| | - I Klerings
- Cochrane Austria, Danube University Krems, Krems a.d. Donau, Austria
| | - R Sfetcu
- National School of Public Health, Management and Professional Development Bucharest, Romania; Spiru Haret University, Faculty of Psychology and Educational Sciences
| | - N Riva
- Department of Pathology, Faculty of Medicine and Surgery, University of Malta, Msida, Malta
| | - M Mahmić-Kaknjo
- Department of Clinical Pharmacology, Cantonal Hospital Zenica, Zenica, Bosnia and Herzegovina; Faculty of Medicine, University of Zenica, Zenica, Bosnia and Herzegovina
| | - G Poulentzas
- Laboratory of Hygiene and Environmental Protection, Department of Medicine, Democritus University of Thrace
| | - P Martinez
- Centro de Análisis de la Evidencia Científica, Academia Española de Nutrición y Dietética, España; Techné research group. Department of knowledge engineering of the Faculty of Science. University of Granada. Spain
| | - E Baladia
- Centro de Análisis de la Evidencia Científica, Academia Española de Nutrición y Dietética, España
| | - L E Ziganshina
- Cochrane Russia at the Russian Medical Academy for Continuing Professional Education (RMANPO) of the Ministry of Health of Russian Federation and the Kazan State Medical University of the Ministry of Health of Russian Federation
| | - M E Marqués
- Centro de Análisis de la Evidencia Científica, Academia Española de Nutrición y Dietética, España
| | - L Aguilar
- Centro de Análisis de la Evidencia Científica, Academia Española de Nutrición y Dietética, España
| | - A P Kassianos
- Department of Applied Health Research, University College London, London, UK; Department of Psychology, University of Cyprus, Nicosia, Cyprus
| | - G Frampton
- Southampton Health Technology Assessments Centre (SHTAC), Faculty of Medicine, University of Southampton, UK
| | - A G Silva
- School of Health Sciences & CINTESIS.UA, University of Aveiro, Campus UNiversitário de Santiago, Portugal
| | - L Affengruber
- Cochrane Austria, Danube University Krems, Krems a.d. Donau, Austria; Department of Family Medicine, Care and Public Health Research Institute (CAPHRI), Maastricht University, The Netherlands
| | - R Spjker
- Cochrane Netherlands, Julius Center for Health Sciences and Primary Care, UMC Utrecht, Utrecht University, Utrecht, the Netherlands; Amsterdam UMC, Univ of Amsterdam, Amsterdam Public Health, Medical Library, Meibergdreef 9, Amsterdam, Netherlands
| | | | - R C Berg
- Norwegian Institute of Public Health, Oslo, Norway
| | - M Kontogiani
- Department of Nutrition and Dietetics, School of Health Sciences and Education, Harokopio University, Athens, Greece
| | - M Sousa
- Nutrition & Metabolism, NOVA Medical School, Faculdade de Ciências Médicas, Universidade NOVA de Lisboa, Campo dos Mártires da Pátria, 1169-056 Lisboa, Portugal; CINTESIS, NOVA Medical School, NMS, Universidade Nova de Lisboa, Campo dos Mártires da Pátria, 1169-056 Lisboa, Portugal
| | - C Kontogiorgis
- Faculty of Medicine, University of Zenica, Zenica, Bosnia and Herzegovina
| | - G Gartlehner
- Cochrane Austria, Danube University Krems, Krems a.d. Donau, Austria; RTI International, Research Triangle Park, North Carolina, USA
| |
Collapse
|
8
|
Sorbara M, Graviotto H, Lage-Ruiz G, Turizo-Rodriguez C, Sotelo-López L, Serra A, Gagliardi C, Heinemann G, Martinez P, Ces-Magliano F, Serrano C. COVID-19 and the forgotten pandemic: follow-up of neurocognitive disorders during lockdown in Argentina. Neurología (English Edition) 2021. [PMCID: PMC7737507 DOI: 10.1016/j.nrleng.2020.07.014] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022] Open
Abstract
Introduction Health systems in numerous countries around the world are suffering a serious burden as a consequence of the COVID-19 pandemic. As a result of this situation, the follow-up of such chronic diseases as dementia may be at risk. Similarly, neuropsychiatric complications related to lockdown measures may also be neglected; Argentina’s lockdown has been the longest implemented in Latin America. This study aims to determine the frequency of the different types of medical consultations for neurocognitive disorders and the predictors for requiring consultation since the beginning of the lockdown. Methods We performed a descriptive, observational, cross-sectional study based on data collected through an online survey. Results Data were collected on 324 participants, with 165 (50.9%) having had at least one medical consultation. Consultations were held by telephone in 109 cases (33.6%), by e-mail in 62 (19.1%), by video conference in 30 (9.3%), and at the emergency department in 23 (7.1%). Predictors of requiring consultation were Clinical Dementia Rating scores ≥1 (P < .001) and diagnosis of Alzheimer disease (P = .017). Higher Neuropsychiatric Inventory scores were found in the group of respondents who did require medical consultation (P < .001), but no significant differences were found between groups for Zarit Burden Interview scores. Conclusion We identified a high prevalence of behavioural disorders and caregiver burden during lockdown. Nevertheless, only 50% of respondents had sought medical consultation (by telephone or email in 52.7% of cases). Care of people with dementia must be emphasised, guaranteeing follow-up of these patients.
Collapse
|
9
|
Fedorov N, Beaulieu S, Belsky A, Blanchet V, Bouillaud R, De Anda Villa M, Filippov A, Fourment C, Gaudin J, Grisenti RE, Lamour E, Lévy A, Macé S, Mairesse Y, Martin P, Martinez P, Noé P, Papagiannouli I, Patanen M, Petit S, Vernhet D, Veyrinas K, Descamps D. Aurore: A platform for ultrafast sciences. Rev Sci Instrum 2020; 91:105104. [PMID: 33138551 DOI: 10.1063/5.0012485] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Accepted: 09/16/2020] [Indexed: 06/11/2023]
Abstract
We present the Aurore platform for ultrafast sciences. This platform is based on a unique 20 W, 1 kHz, 26 fs Ti:sapphire laser system designed for reliable operation and high intensity temporal contrast. The specific design ensures the high stability in terms of pulse duration, energy, and beam pointing necessary for extended experimental campaigns. The laser supplies 5 different beamlines, all dedicated to a specific field: attosecond science (Aurore 1), ultrafast phase transitions in solids (Aurore 2 and 3), ultrafast luminescence in solids (Aurore 4), and femtochemistry (Aurore 5). The technical specifications of these five beamlines are described in detail, and examples of the recent results are given.
Collapse
Affiliation(s)
- N Fedorov
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - S Beaulieu
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - A Belsky
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - V Blanchet
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - R Bouillaud
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - M De Anda Villa
- Sorbonne Université, CNRS, UMR 7588, Institut des Nanosciences de Paris, INSP, Campus Pierre et Marie Curie, F-75252 Paris Cedex 05, France
| | - A Filippov
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - C Fourment
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - J Gaudin
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - R E Grisenti
- Institut für Kernphysik, J. W. Goethe Universität, Max von Laue Str. 1, 60438 Frankfurt am Main, Germany
| | - E Lamour
- Sorbonne Université, CNRS, UMR 7588, Institut des Nanosciences de Paris, INSP, Campus Pierre et Marie Curie, F-75252 Paris Cedex 05, France
| | - A Lévy
- Sorbonne Université, CNRS, UMR 7588, Institut des Nanosciences de Paris, INSP, Campus Pierre et Marie Curie, F-75252 Paris Cedex 05, France
| | - S Macé
- Sorbonne Université, CNRS, UMR 7588, Institut des Nanosciences de Paris, INSP, Campus Pierre et Marie Curie, F-75252 Paris Cedex 05, France
| | - Y Mairesse
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - P Martin
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - P Martinez
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - P Noé
- Université Grenoble Alpes, CEA-LETI, 17 rue des Martyrs, F-38054 Grenoble Cedex 9, France
| | - I Papagiannouli
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - M Patanen
- Nano and Molecular Systems Research Unit, Faculty of Science, University of Oulu, P.O. Box 3000, FI-90014 Oulu, Finland
| | - S Petit
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - D Vernhet
- Sorbonne Université, CNRS, UMR 7588, Institut des Nanosciences de Paris, INSP, Campus Pierre et Marie Curie, F-75252 Paris Cedex 05, France
| | - K Veyrinas
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| | - D Descamps
- Université de Bordeaux - CNRS - CEA, CELIA, UMR5107, F-33405 Talence, France
| |
Collapse
|
10
|
Perez-Leal M, Perez Fidalgo J, Sanz C, Poveda J, Milara J, Martinez P, Cervantes A, Cortijo J. 1820P Taxane-related skin toxicity: Analysis of an in vivo and 3D in vitro model study of the impact of paclitaxel on skin. Ann Oncol 2020. [DOI: 10.1016/j.annonc.2020.08.1467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
|
11
|
Koffinas L, Ward M, Ellsworth S, Nystrom G, Martinez P, Saul R, Rokyta D. Exploring venom variation and population dynamics in the striped bark scorpion (Centruroides vittatus). Toxicon 2020. [DOI: 10.1016/j.toxicon.2020.04.078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
12
|
Nuciforo P, Jimenez J, Fasani R, Ruiz F, Sevillano C, Sanchez G, Martinez P, Serres X, Saura C, Elez E, Felip E, Oaknin A, Brana I, Muñoz-Couselo E, Macarulla Mercade T, Alsina Maqueda M, Carles J, Dienstmann R, Tabernero J, Garralda E. Prospective pathological experience with research biopsies in the context of clinical trials at Vall d’Hebron Institute of Oncology. Ann Oncol 2019. [DOI: 10.1093/annonc/mdz268.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
|
13
|
Sheth S, Gao C, Mueller N, Martinez P, Soria JC. Durvalumab activity in previously treated patients who stopped durvalumab without disease progression. Ann Oncol 2019. [DOI: 10.1093/annonc/mdz253.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
|
14
|
Abstract
Interest in the study of Xenacoelomorpha has recently been revived due to realization of its key phylogenetic position as the putative sister group of the remaining Bilateria. Phylogenomic studies have attracted the attention of researchers interested in the evolution of animals and the origin of novelties. However, it is clear that a proper understanding of novelties can only be gained in the context of thorough descriptions of the anatomy of the different members of this phylum. A considerable literature, based mainly on conventional histological techniques, describes different aspects of xenacoelomorphs' tissue architecture. However, the focus has been somewhat uneven; some tissues, such as the neuro-muscular system, are relatively well described in most groups, whereas others, including the digestive system, are only poorly understood. Our lack of knowledge of the xenacoelomorph digestive system is exacerbated by the assumption that, at least in Acoela, which possess a syncytial gut, the digestive system is a derived and specialized tissue with little bearing on what is observed in other bilaterian animals. Here, we try to remedy this lack of attention by revisiting the different studies of the xenacoelomorph digestive system, and we discuss the diversity present in the light of new evolutionary knowledge.
Collapse
Affiliation(s)
- B Gavilán
- Departament de Genètica, Microbiologia i Estadística, Universitat de Barcelona, Av. Diagonal 643, 08028, Barcelona, Spain
| | - S G Sprecher
- Department of Biology, University of Fribourg, 10, ch. Du Musée, 1700, Fribourg, Switzerland
| | - V Hartenstein
- Department of Biology, University of California, Los Angeles, CA, USA.
| | - P Martinez
- Departament de Genètica, Microbiologia i Estadística, Universitat de Barcelona, Av. Diagonal 643, 08028, Barcelona, Spain.
- Institut Català de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.
| |
Collapse
|
15
|
Jaegle E, Cordier E, Alayrach M, Badey A, Bodez V, Khamphan C, Martinez P, Garcia R. EP-1870 Dosimetric assessment of metal artefact corrected CT images use for pelvis treatment planning. Radiother Oncol 2019. [DOI: 10.1016/s0167-8140(19)32290-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
16
|
Badey A, Bodez V, Khamphan C, Jaegle E, Alayrach M, Martinez P, Garcia R. 31 Evaluation of Hounsfield Unit correction method on Cone-Beam CT for dose calculation strategies. Phys Med 2018. [DOI: 10.1016/j.ejmp.2018.09.044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
|
17
|
Garcia R, Francois G, Jaegle E, Bodez V, Khamphan C, Alayrach M, Badey A, Martinez P. 3 Brain stereotactic radiotherapy: Four versus three table rotation position. Phys Med 2018. [DOI: 10.1016/j.ejmp.2018.09.085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
|
18
|
Smith DJ, Ravichandar JD, Jain S, Griffin DW, Yu H, Tan Q, Thissen J, Lusby T, Nicoll P, Shedler S, Martinez P, Osorio A, Lechniak J, Choi S, Sabino K, Iverson K, Chan L, Jaing C, McGrath J. Airborne Bacteria in Earth's Lower Stratosphere Resemble Taxa Detected in the Troposphere: Results From a New NASA Aircraft Bioaerosol Collector (ABC). Front Microbiol 2018; 9:1752. [PMID: 30154759 PMCID: PMC6102410 DOI: 10.3389/fmicb.2018.01752] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Accepted: 07/13/2018] [Indexed: 01/26/2023] Open
Abstract
Airborne microorganisms in the upper troposphere and lower stratosphere remain elusive due to a lack of reliable sample collection systems. To address this problem, we designed, installed, and flight-validated a novel Aircraft Bioaerosol Collector (ABC) for NASA's C-20A that can make collections for microbiological research investigations up to altitudes of 13.7 km. Herein we report results from the first set of science flights-four consecutive missions flown over the United States (US) from 30 October to 2 November, 2017. To ascertain how the concentration of airborne bacteria changed across the tropopause, we collected air during aircraft Ascent/Descent (0.3 to 11 km), as well as sustained Cruise altitudes in the lower stratosphere (~12 km). Bioaerosols were captured on DNA-treated gelatinous filters inside a cascade air sampler, then analyzed with molecular and culture-based characterization. Several viable bacterial isolates were recovered from flight altitudes, including Bacillus sp., Micrococcus sp., Arthrobacter sp., and Staphylococcus sp. from Cruise samples and Brachybacterium sp. from Ascent/Descent samples. Using 16S V4 sequencing methods for a culture-independent analysis of bacteria, the average number of total OTUs was 305 for Cruise samples and 276 for Ascent/Descent samples. Some taxa were more abundant in the flight samples than the ground samples, including OTUs from families Lachnospiraceae, Ruminococcaceae and Erysipelotrichaceae as well as the following genera: Clostridium, Mogibacterium, Corynebacterium, Bacteroides, Prevotella, Pseudomonas, and Parabacteroides. Surprisingly, our results revealed a homogeneous distribution of bacteria in the atmosphere up to 12 km. The observation could be due to atmospheric conditions producing similar background aerosols across the western US, as suggested by modeled back trajectories and satellite measurements. However, the influence of aircraft-associated bacterial contaminants could not be fully eliminated and that background signal was reported throughout our dataset. Considering the tremendous engineering challenge of collecting biomass at extreme altitudes where contamination from flight hardware remains an ever-present issue, we note the utility of using the stratosphere as a proving ground for planned life detection missions across the solar system.
Collapse
Affiliation(s)
- David J. Smith
- NASA Ames Research Center, Space Biosciences DivisionMoffett Field, CA, United States
| | | | - Sunit Jain
- Second Genome Inc.South San Francisco, CA, United States
| | - Dale W. Griffin
- United States Geological Survey, Environmental HealthSt. Petersburg, FL, United States
| | - Hongbin Yu
- Climate and Radiation Laboratory, NASA Goddard Space Flight CenterGreenbelt, MD, United States
| | - Qian Tan
- Earth Science Division, Bay Area Environmental Research InstituteMoffett Field, CA, United States
| | - James Thissen
- Lawrence Livermore National LaboratoryLivermore, CA, United States
| | - Terry Lusby
- NASA Ames Research Center, Space Biosciences DivisionMoffett Field, CA, United States
| | - Patrick Nicoll
- Space Biosciences Division, Blue Marble Space Institute of ScienceMoffett Field, CA, United States
| | - Sarah Shedler
- Biological Oceanography Department, University of South Florida, College of Marine SciencesSt. Petersburg, FL, United States
| | - Paul Martinez
- NASA Armstrong Flight Research CenterPalmdale, CA, United States
| | - Alejandro Osorio
- Jacobs Technology Inc., NASA Armstrong Flight Research CenterPalmdale, CA, United States
| | - Jason Lechniak
- NASA Armstrong Flight Research CenterPalmdale, CA, United States
| | - Samuel Choi
- Jacobs Technology Inc., NASA Armstrong Flight Research CenterPalmdale, CA, United States
| | - Kayleen Sabino
- Second Genome Inc.South San Francisco, CA, United States
| | | | - Luisa Chan
- Second Genome Inc.South San Francisco, CA, United States
| | - Crystal Jaing
- Lawrence Livermore National LaboratoryLivermore, CA, United States
| | - John McGrath
- NASA Armstrong Flight Research CenterPalmdale, CA, United States
| |
Collapse
|
19
|
Ward MJ, Ellsworth SA, Hogan MP, Nystrom GS, Martinez P, Budhdeo A, Zelaya R, Perez A, Powell B, He H, Rokyta DR. Female-biased population divergence in the venom of the Hentz striped scorpion (Centruroides hentzi). Toxicon 2018; 152:137-149. [PMID: 30096334 DOI: 10.1016/j.toxicon.2018.07.026] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2018] [Revised: 06/27/2018] [Accepted: 07/31/2018] [Indexed: 11/16/2022]
Abstract
Sex-biased genes are expressed at higher levels in one sex and contribute to phenotypic differences between males and females, as well as overall phenotypic variation within and among populations. Venom has evolved primarily for predation and defense, making venom expression a highly variable phenotype as a result of local adaptation. Several scorpion species have shown both intraspecific and intersexual venom variation, and males have been observed using venom in courtship and mating, suggesting the existence of venom-specific, sex-biased genes that may contribute to population divergence. We used reversed-phase high-performance liquid chromatography (RP-HPLC), Agilent protein bioanalyzer chips, nano-liquid chromatography mass spectrometry (nLC/MS/MS), and median lethal dose (LD50) assays in fruit flies (Drosophila melanogaster) and banded crickets (Gryllodes sigillatus) to investigate proteomic and functional venom variation within and among three Florida populations of the Hentz striped scorpion (Centruroides hentzi). We found significant venom variation among populations, with females, not males, being responsible for this divergence. We also found significant variation in venom expression within populations, with males contributing more to within population variation than females. Our results provide evidence that male and female scorpions experience different natural and sexual selective pressures that have led to the expression of sex-biased venom genes and that these genes may be consequential in population divergence.
Collapse
Affiliation(s)
- Micaiah J Ward
- Department of Biological Science, Florida State University, Tallahassee, FL, 32306, USA
| | - Schyler A Ellsworth
- Department of Biological Science, Florida State University, Tallahassee, FL, 32306, USA
| | - Michael P Hogan
- Department of Biological Science, Florida State University, Tallahassee, FL, 32306, USA
| | - Gunnar S Nystrom
- Department of Biological Science, Florida State University, Tallahassee, FL, 32306, USA
| | - Paul Martinez
- Department of Biological Science, Florida State University, Tallahassee, FL, 32306, USA
| | - Amisha Budhdeo
- Department of Biological Science, Florida State University, Tallahassee, FL, 32306, USA
| | - Roxana Zelaya
- Department of Biological Science, Florida State University, Tallahassee, FL, 32306, USA
| | - Alexander Perez
- Department of Biological Science, Florida State University, Tallahassee, FL, 32306, USA
| | - Barclay Powell
- Department of Biological Science, Florida State University, Tallahassee, FL, 32306, USA
| | - Huan He
- Institute of Molecular Biophysics and College of Medicine, Florida State University, Tallahassee, FL, 32306, USA
| | - Darin R Rokyta
- Department of Biological Science, Florida State University, Tallahassee, FL, 32306, USA.
| |
Collapse
|
20
|
Margery-Muir AA, Bundell C, Wetherall JD, Whidborne R, Martinez P, Groth DM. Insights on the relationship between complement component C4 serum concentrations and C4 gene copy numbers in a Western Australian systemic lupus erythematosus cohort. Lupus 2018; 27:1687-1696. [PMID: 30041577 DOI: 10.1177/0961203318787039] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The relationship between serum concentration of complement C4 ([C4]) and C4 gene copy number (GCN) was investigated in 56 systemic lupus erythematosus (SLE) patients and 33 age and sex-matched controls in a Western Australian population. C4A and C4B gene copy numbers (C4A & B GCN) together with the presence or absence of the ≈6.4-kb human endogenous retroviral element type K (hereafter HERV-K) in intron 9 were estimated by two TaqMan™ real-time PCR (RT-PCR) assays that measured total C4 and HERV-K GCNs, respectively. There was good correlation between the two methods; however, the HERV-K GCN method showed a positive bias (≈6%) relative to the C4A & B total GCN. Despite individual variation, excellent correlation between total C4 GCN and mean [C4] per GCN was observed for both the SLE and control cohorts ( R2 = 88% and R2 = 99%, respectively). It was noted that serum [C4] was significantly lower in the SLE patients than the controls ( p = 0.006) despite there being no difference between C4A and C4B GCN in both cohorts. The data therefore confirm previous reports that the C4A genes are preferentially associated with the presence of the HERV-K insertion relative to C4B genes and does not support the hypothesis that low [C4] in SLE is explained by low C4A GCNs. There was no evidence also that the presence of the HERV-K insertion in C4 genes influenced [C4]. This study supports the view that low [C4] in SLE patients is due to consumption rather than deficient synthesis related to lower C4A & B GCN.
Collapse
Affiliation(s)
- A A Margery-Muir
- 1 School of Biomedical Sciences, Curtin Health Innovation Research Institute, Curtin University, Bentley, Australia
| | - C Bundell
- 2 PathWest Laboratory Medicine, Queen Elizabeth II Medical Centre, Nedlands, Australia
| | - J D Wetherall
- 1 School of Biomedical Sciences, Curtin Health Innovation Research Institute, Curtin University, Bentley, Australia
| | - R Whidborne
- 3 PathWest Fiona Stanley Hospital (FSH) Network, Clinical Immunology Fiona Stanley Hospital, Murdoch, Australia
| | - P Martinez
- 3 PathWest Fiona Stanley Hospital (FSH) Network, Clinical Immunology Fiona Stanley Hospital, Murdoch, Australia.,4 School of Medicine, Division of Pathology and Laboratory Medicine, Faculty of Health and Medical Science, University of Western Australia, Crawley, Australia
| | - D M Groth
- 1 School of Biomedical Sciences, Curtin Health Innovation Research Institute, Curtin University, Bentley, Australia
| |
Collapse
|
21
|
Garcia R, Francois G, Jaegle E, Bodez V, Khamphan C, Alayrach M, Badey A, Martinez P. EP-1944: Brain stereotactic Radiotherapy : four versus three table rotation position. Radiother Oncol 2018. [DOI: 10.1016/s0167-8140(18)32253-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
|
22
|
Garcia R, Mazars P, Jaegle E, Bodez V, Khamphan C, Alayrach M, Badey A, Martinez P. EP-2026: Breast Radiotherapy : Heart position reproducibility with spirometric DIBH. Radiother Oncol 2018. [DOI: 10.1016/s0167-8140(18)32335-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
23
|
Maroso F, Hillen JEJ, Pardo BG, Gkagkavouzis K, Coscia I, Hermida M, Franch R, Hellemans B, Van Houdt J, Simionati B, Taggart JB, Nielsen EE, Maes G, Ciavaglia SA, Webster LMI, Volckaert FAM, Martinez P, Bargelloni L, Ogden R. Performance and precision of double digestion RAD (ddRAD) genotyping in large multiplexed datasets of marine fish species. Mar Genomics 2018; 39:64-72. [PMID: 29496460 DOI: 10.1016/j.margen.2018.02.002] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Revised: 02/19/2018] [Accepted: 02/20/2018] [Indexed: 01/29/2023]
Abstract
The development of Genotyping-By-Sequencing (GBS) technologies enables cost-effective analysis of large numbers of Single Nucleotide Polymorphisms (SNPs), especially in "non-model" species. Nevertheless, as such technologies enter a mature phase, biases and errors inherent to GBS are becoming evident. Here, we evaluated the performance of double digest Restriction enzyme Associated DNA (ddRAD) sequencing in SNP genotyping studies including high number of samples. Datasets of sequence data were generated from three marine teleost species (>5500 samples, >2.5 × 1012 bases in total), using a standardized protocol. A common bioinformatics pipeline based on STACKS was established, with and without the use of a reference genome. We performed analyses throughout the production and analysis of ddRAD data in order to explore (i) the loss of information due to heterogeneous raw read number across samples; (ii) the discrepancy between expected and observed tag length and coverage; (iii) the performances of reference based vs. de novo approaches; (iv) the sources of potential genotyping errors of the library preparation/bioinformatics protocol, by comparing technical replicates. Our results showed use of a reference genome and a posteriori genotype correction improved genotyping precision. Individual read coverage was a key variable for reproducibility; variance in sequencing depth between loci in the same individual was also identified as an important factor and found to correlate to tag length. A comparison of downstream analysis carried out with ddRAD vs single SNP allele specific assay genotypes provided information about the levels of genotyping imprecision that can have a significant impact on allele frequency estimations and population assignment. The results and insights presented here will help to select and improve approaches to the analysis of large datasets based on RAD-like methodologies.
Collapse
Affiliation(s)
- F Maroso
- Department of Compared Biomedicine and Food Science, University of Padova, 35020 Legnaro, Italy.
| | - J E J Hillen
- Laboratory of Biodiversity and Evolutionary Genomics, University of Leuven, Ch. de Bériotstraat 32 Box 2439, B-3000 Leuven, Belgium
| | - B G Pardo
- Departmento de Zoología, Genética y Antropología Física, Universidade de Santiago de Compostela, 27002 Lugo, Spain
| | - K Gkagkavouzis
- Department of Genetics, Development & Molecular Biology, School of Biology, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - I Coscia
- Laboratory of Biodiversity and Evolutionary Genomics, University of Leuven, Ch. de Bériotstraat 32 Box 2439, B-3000 Leuven, Belgium; School of Environmental and Life Science, Rm 332, Peel Building, University of Salford, Salford M5 4WT, UK
| | - M Hermida
- Departmento de Zoología, Genética y Antropología Física, Universidade de Santiago de Compostela, 27002 Lugo, Spain
| | - R Franch
- Department of Compared Biomedicine and Food Science, University of Padova, 35020 Legnaro, Italy
| | - B Hellemans
- Laboratory of Biodiversity and Evolutionary Genomics, University of Leuven, Ch. de Bériotstraat 32 Box 2439, B-3000 Leuven, Belgium
| | - J Van Houdt
- Department of Human Genetics, University of Leuven, O&N I Herestraat 49 - Box 602, B-3000 Leuven, Belgium
| | - B Simionati
- BMR Genomics, Via Redipuglia 21a, Padova, Italy
| | - J B Taggart
- Division of Environmental and Evolutionary Biology, School of Biology and Biochemistry, The Queen's University of Belfast, Belfast BT7 INN, UK
| | - E E Nielsen
- National Institute of Aquatic Resources, Technical University of Denmark, Vejlsøvej 39, 8600 Silkeborg, Denmark
| | - G Maes
- Laboratory of Biodiversity and Evolutionary Genomics, University of Leuven, Ch. de Bériotstraat 32 Box 2439, B-3000 Leuven, Belgium; Department of Human Genetics, University of Leuven, O&N I Herestraat 49 - Box 602, B-3000 Leuven, Belgium; Centre for Sustainable Tropical Fisheries and Aquaculture, Comparative Genomics Centre, College of Marine and Environmental Sciences, Faculty of Science and Engineering, James Cook University, Townsville, 4811, QLD, Australia
| | - S A Ciavaglia
- Science and Advice for Scottish Agriculture, Roddinglaw Road, Edinburgh EH12 9FJ, UK
| | - L M I Webster
- Science and Advice for Scottish Agriculture, Roddinglaw Road, Edinburgh EH12 9FJ, UK
| | - F A M Volckaert
- Laboratory of Biodiversity and Evolutionary Genomics, University of Leuven, Ch. de Bériotstraat 32 Box 2439, B-3000 Leuven, Belgium
| | - P Martinez
- Departmento de Zoología, Genética y Antropología Física, Universidade de Santiago de Compostela, 27002 Lugo, Spain
| | - L Bargelloni
- Department of Compared Biomedicine and Food Science, University of Padova, 35020 Legnaro, Italy
| | - R Ogden
- Royal (Dick) School of Veterinary Studies and the Roslin Institute, University of Edinburgh, Edinburgh EH25 9RG, UK
| | | |
Collapse
|
24
|
Bodez V, Khamphan C, Francois G, Jaegle E, Alayrach M, Badey A, Martinez P, Garcia R. 12. Feedback on use of the RapidPlan™ knowledge based planning system for the realization of prostatic treatment planning in volumetric modulated arctherapy. Phys Med 2017. [DOI: 10.1016/j.ejmp.2017.10.037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
|
25
|
Badey A, Tolsa S, Bodez V, Khamphan C, Jaegle E, Alayrach M, Martinez P, Garcia R. 17. Evaluation of a b-spline deformable image registration algorithm using numerical phantoms and physical phantom (“Phydeform”) for dose warping. Phys Med 2017. [DOI: 10.1016/j.ejmp.2017.10.042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
|
26
|
Martinez P, Mahadevan N, Nguyen T, Lydon C, Sholl L, Jänne P, Oxnard G. MA 07.08 Clinical Implications of ALK Resistance Mutations: Institutional Experience and Launch of Remote Participation Study. J Thorac Oncol 2017. [DOI: 10.1016/j.jtho.2017.09.509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
27
|
Martinez P, Clausen T. BINGE DRINKING AND INCIDENT ANGINA PECTORIS AMONG OLDER ADULTS IN LOW-AND MIDDLE-INCOME COUNTRIES. Innov Aging 2017. [DOI: 10.1093/geroni/igx004.242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- P. Martinez
- Alcohol Research Group, Emeryville, California,
| | - T. Clausen
- Norwegian Center for Addiction Research, University of Oslo, Oslo, Norway
| |
Collapse
|
28
|
Dörnemann J, van den Boogaard W, Van den Bergh R, Takarinda KC, Martinez P, Bekouanebandi JG, Javed I, Ndelema B, Lefèvre A, Khalid GG, Zuniga I. Where technology does not go: specialised neonatal care in resource-poor and conflict-affected contexts. Public Health Action 2017; 7:168-174. [PMID: 28695092 DOI: 10.5588/pha.16.0127] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2016] [Accepted: 04/01/2017] [Indexed: 12/22/2022] Open
Abstract
Setting: Although neonatal mortality is gradually decreasing worldwide, 98% of neonatal deaths occur in low- and middle-income countries, where hospital care for sick and premature neonates is often unavailable. Médecins Sans Frontières Operational Centre Brussels (MSF-OCB) managed eight specialised neonatal care units (SNCUs) at district level in low-resource and conflict-affected settings in seven countries. Objective: To assess the performance of the MSF SNCU model across different settings in Africa and Southern Asia, and to describe the set-up of eight SNCUs, neonate characteristics and clinical outcomes among neonates from 2012 to 2015. Design: Multicentric descriptive study. Results: The MSF SNCU model was characterised by an absence of high-tech equipment and an emphasis on dedicated nursing and medical care. Focus was on the management of hypothermia, hypoglycaemia, feeding support and early identification/treatment of infection. Overall, 11 970 neonates were admitted, 41% of whom had low birthweight (<2500 g). The main diagnoses were low birthweight, asphyxia and neonatal infections. Overall mortality was 17%, with consistency across the sites. Chances of survival increased with higher birthweight. Conclusion: The standardised SNCU model was implemented across different contexts and showed in-patient outcomes within acceptable limits. Low-tech medical care for sick and premature neonates can and should be implemented at district hospital level in low-resource settings.
Collapse
Affiliation(s)
- J Dörnemann
- Medical Department, Médecins Sans Frontières (MSF) Operational Centre Brussels, Brussels, Belgium
| | - W van den Boogaard
- Medical Department, Médecins Sans Frontières (MSF) Operational Centre Brussels, Brussels, Belgium
| | - R Van den Bergh
- Medical Department, Médecins Sans Frontières (MSF) Operational Centre Brussels, Brussels, Belgium
| | - K C Takarinda
- International Union Against Tuberculosis and Lung Disease, Paris, France.,AIDS and TB Department, Ministry of Health and Child Care, Harare, Zimbabwe
| | - P Martinez
- Department of Pediatrics, The Permanente Medical Group, Inc, San Rafael, California, USA.,MSF, New York, New York, USA
| | | | | | - B Ndelema
- Department of Obstetric Fistula, Ministry of Public Health and the Fight Against AIDS, Gitega, Burundi
| | - A Lefèvre
- Medical Department, Médecins Sans Frontières (MSF) Operational Centre Brussels, Brussels, Belgium
| | | | - I Zuniga
- Medical Department, Médecins Sans Frontières (MSF) Operational Centre Brussels, Brussels, Belgium
| |
Collapse
|
29
|
Mercadal S, Vidal N, López-Parra M, Ibañez M, Caldú R, Bobillo S, Barceló I, García E, Martinez P, Cacabelos P, Dlouhy I, Sancho J, Muntañola A, Gómez L, Erro E, Gállego J, Salar A, Caballero A, Solé M, Huertas N, Estela J, Baron M, Barbero N, González-Barca E, Graus F, Velasco R. Initial management of primary central nervous system lymphoma in Spain in the last decade. The experience of the GELTAMO and Spanish neuro-oncology groups. Hematol Oncol 2017. [DOI: 10.1002/hon.2439_107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- S. Mercadal
- Hematology; Catalan Institute of Oncology. Hospital Duran i Reynals., L'Hospitalet de Llobregat; Barcelona Spain
| | - N. Vidal
- Pathology; Hospital de Bellvitge, L'Hospitalet de Llobregat; Barcelona Spain
| | - M. López-Parra
- Hematology; Hospital Universitario de Salamanca; Salamanca Spain
| | - M. Ibañez
- Neurology; Hospital Universitario i Politècnic La Fe; Valencia Spain
| | - R. Caldú
- Neurology; Hospital Universitario Miguel Servet; Zaragoza Spain
| | - S. Bobillo
- Hematology; Hospital Vall d'Hebrón; Barcelona Spain
| | - I. Barceló
- Neurology; Hospital Universitario Son Espases; Palma de Mallorca Spain
| | - E. García
- Neurology; Hospital Universitario Virgen de la Arrixaca; Murcia Spain
| | - P. Martinez
- Hematology; Hospital Universitario Doce de Octubre; Madrid Spain
| | - P. Cacabelos
- Neurology; Complejo hospitalario Santiago Compostela; Santiago Compostela Spain
| | - I. Dlouhy
- Hematology; Hospital Clínic; Barcelona Spain
| | - J. Sancho
- Hematology; ICO. Hospital Germans Trias i Pujol; Badalona Spain
| | - A. Muntañola
- Hematology; Hospital Mutua de Terrassa; Terrassa Spain
| | - L. Gómez
- Neurology; Hospital Quirón; Madrid Spain
| | - E. Erro
- Neurology; Hospital de Navarra; Pamplona Spain
| | - J. Gállego
- Neurology; Clínica Universitaria de Navarra; Pamplona Spain
| | - A. Salar
- Hematology; Hospital del Mar; Barcelona Spain
| | - A. Caballero
- Hematology; Hospital de Sant Pau; Barcelona Spain
| | - M. Solé
- Hematology; Hospital Virgen del Rocío; Sevilla Spain
| | - N. Huertas
- Neurology; Hospiatl Severo Ochoa; Leganés Spain
| | - J. Estela
- Neurology; Hospital Parc Taulí; Sabadell Spain
| | - M. Baron
- Neurology; Hospital Fundación Alcorcón; Alcorcón Spain
| | - N. Barbero
- Neurology; Hospital Rey Juan Carlos; Móstoles Spain
| | - E. González-Barca
- Hematology; Catalan Institute of Oncology. Hospital Duran i Reynals., L'Hospitalet de Llobregat; Barcelona Spain
| | - F. Graus
- Hematology; Hospital Clínic; Barcelona Spain
| | - R. Velasco
- Neurology; Hospital de Bellvitge, L'Hospitalet de Llobregat; Barcelona Spain
| |
Collapse
|
30
|
|
31
|
Jaillet C, Morelle W, Slomianny M, Paget V, Tarlet G, Buard V, Selbonne S, Caffin F, Rannou E, Martinez P, François A, Foulquier F, Allain F, Milliat F, Guipaud O. OC-0031: Global changes in the glycosylation of irradiated endothelial cells with functional consequences. Radiother Oncol 2017. [DOI: 10.1016/s0167-8140(17)30475-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
32
|
Di Florio A, Putnam K, Altemus M, Apter G, Bergink V, Bilszta J, Brock R, Buist A, Deligiannidis KM, Devouche E, Epperson CN, Guille C, Kim D, Lichtenstein P, Magnusson PKE, Martinez P, Munk-Olsen T, Newport J, Payne J, Penninx BW, O’Hara M, Robertson-Blackmore E, Roza SJ, Sharkey KM, Stuart S, Tiemeier H, Viktorin A, Schmidt PJ, Sullivan PF, Stowe ZN, Wisner KL, Jones I, Rubinow DR, Meltzer-Brody S. The impact of education, country, race and ethnicity on the self-report of postpartum depression using the Edinburgh Postnatal Depression Scale. Psychol Med 2017; 47:787-799. [PMID: 27866476 PMCID: PMC5369767 DOI: 10.1017/s0033291716002087] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
BACKGROUND Universal screening for postpartum depression is recommended in many countries. Knowledge of whether the disclosure of depressive symptoms in the postpartum period differs across cultures could improve detection and provide new insights into the pathogenesis. Moreover, it is a necessary step to evaluate the universal use of screening instruments in research and clinical practice. In the current study we sought to assess whether the Edinburgh Postnatal Depression Scale (EPDS), the most widely used screening tool for postpartum depression, measures the same underlying construct across cultural groups in a large international dataset. METHOD Ordinal regression and measurement invariance were used to explore the association between culture, operationalized as education, ethnicity/race and continent, and endorsement of depressive symptoms using the EPDS on 8209 new mothers from Europe and the USA. RESULTS Education, but not ethnicity/race, influenced the reporting of postpartum depression [difference between robust comparative fit indexes (∆*CFI) 0.01), but not between European countries (∆*CFI < 0.01). CONCLUSIONS Investigators and clinicians should be aware of the potential differences in expression of phenotype of postpartum depression that women of different educational backgrounds may manifest. The increasing cultural heterogeneity of societies together with the tendency towards globalization requires a culturally sensitive approach to patients, research and policies, that takes into account, beyond rhetoric, the context of a person's experiences and the context in which the research is conducted.
Collapse
Affiliation(s)
- A. Di Florio
- Department of Psychiatry, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
- Institute of Psychological Medicine and Clinical Neuroscience, Cardiff University School of Medicine, Cardiff, UK
| | - K. Putnam
- Department of Psychiatry, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - M. Altemus
- Department of Psychiatry, Weill Cornell Medical College, New York, NY, USA
| | - G. Apter
- Erasme Hospital, Paris Diderot University, Paris, France
| | - V. Bergink
- Department of Psychiatry/Psychology, Erasmus MC, Rotterdam, The Netherlands
- Department of Economics and Business, National Centre for Integrated Register-based Research, Aarhus University, Aarhus, Denmark
| | - J. Bilszta
- Women’s Mental Health, University of Melbourne, Melbourne, VIC, Australia
| | - R. Brock
- Department of Psychological and Brain Sciences, The University of Iowa, Iowa City, IA, USA
| | - A. Buist
- Women’s Mental Health, University of Melbourne, Melbourne, VIC, Australia
| | - K. M. Deligiannidis
- Departments of Psychiatry and Obstetrics and Gynecology, Hofstra Northwell School of Medicine, Glen Oaks, NY, USA
| | - E. Devouche
- Erasme Hospital, Paris Descartes University, Paris, France
| | - C. N. Epperson
- Department of Psychiatry, University of Pennsylvania, Philadelphia, PA, USA
| | - C. Guille
- Department of Psychiatry, Medical University of South Carolina, Charleston, SC, USA
| | - D. Kim
- Department of Psychiatry, University of Pennsylvania, Philadelphia, PA, USA
| | - P. Lichtenstein
- Department of Medical Epidemiology and Biostatistics, Karolinska Institute, Stockholm, Sweden
| | - P. K. E. Magnusson
- Department of Medical Epidemiology and Biostatistics, Karolinska Institute, Stockholm, Sweden
| | - P. Martinez
- Behavioral Endocrinology Branch, National Institute of Mental Health, National Institutes of Health, Health and Human Services, Bethesda, MD, USA
| | - T. Munk-Olsen
- Department of Economics and Business, National Centre for Integrated Register-based Research, Aarhus University, Aarhus, Denmark
| | - J. Newport
- Department of Psychiatry, University of Miami, Miami, FL, USA
| | - J. Payne
- Department of Psychiatry, The Johns Hopkins University, Baltimore, MD, USA
| | - B. W. Penninx
- Department of Psychiatry, VU University Medical Center, Amsterdam, The Netherlands
| | - M. O’Hara
- Department of Psychological and Brain Sciences, The University of Iowa, Iowa City, IA, USA
| | | | - S. J. Roza
- Department of Psychiatry/Psychology, Erasmus MC, Rotterdam, The Netherlands
| | - K. M. Sharkey
- Department of Psychiatry, Alpert Medical School of Brown University/Rhode Island Hospital, Providence, RI, USA
| | - S. Stuart
- Department of Psychological and Brain Sciences, The University of Iowa, Iowa City, IA, USA
| | - H. Tiemeier
- Department of Psychiatry/Psychology, Erasmus MC, Rotterdam, The Netherlands
| | - A. Viktorin
- Department of Medical Epidemiology and Biostatistics, Karolinska Institute, Stockholm, Sweden
| | - P. J. Schmidt
- Behavioral Endocrinology Branch, National Institute of Mental Health, National Institutes of Health, Health and Human Services, Bethesda, MD, USA
| | - P. F. Sullivan
- Department of Psychiatry, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Z. N. Stowe
- Department of Psychiatry, University of Arkansas for Medical Sciences, Little Rock, AR, USA
| | - K. L. Wisner
- Asher Center for the Study and Treatment of Depressive Disorders, Northwestern University Feinberg School of Medicine, Chicago, IL, USA
| | - I. Jones
- Institute of Psychological Medicine and Clinical Neuroscience, Cardiff University School of Medicine, Cardiff, UK
| | - D. R. Rubinow
- Department of Psychiatry, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - S. Meltzer-Brody
- Department of Psychiatry, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | | |
Collapse
|
33
|
Martinez P, Ruiz JN, Duo R, Fatás E. Dielectric and thermal contributions to the activation values and molecular parameters of the activated complex in the scission of neo-amyl ester in varying media. Z PHYS CHEM 2017. [DOI: 10.1515/zpch-1983-264123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
34
|
Martinez P, Zuluaga J, Rodriguez AF. Kinetics and Oxidation Mechanism of L-Ascorbic Acid by Chloropentaminecobalt(III) Ions in Acidic and Basic Aqueous Solutions. Z PHYS CHEM 2017. [DOI: 10.1515/zpch-1989-27058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
35
|
Martinez P, Rodriguez AF, Zuluaga J. Study of Molecular Interactions and Activated Complex of Reactions in Hydroalcoholic Media. Z PHYS CHEM 2017. [DOI: 10.1515/zpch-1989-27010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
36
|
Martinez P, Bellot-Arcís C, Llamas JM, Cibrian R, Gandia JL, Paredes-Gallardo V. Orthodontic camouflage versus orthognathic surgery for class III deformity: comparative cephalometric analysis. Int J Oral Maxillofac Surg 2016; 46:490-495. [PMID: 28034574 DOI: 10.1016/j.ijom.2016.12.001] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2016] [Revised: 09/07/2016] [Accepted: 12/06/2016] [Indexed: 11/25/2022]
Abstract
The objective of this study was to compare different cephalometric variables in adult patients with class III malocclusions before and after treatment, in order to determine which variables are indicative of orthodontic camouflage or orthognathic surgery. The cases of 156 adult patients were assessed: 77 treated with orthodontic camouflage and 79 treated with orthodontics and orthognathic surgery. The following cephalometric variables were measured on pre-treatment (T1) and post-treatment (T2) lateral cephalograms: sella-nasion-A-point (SNA), sella-nasion-B-point (SNB), and A-point-nasion-B-point (ANB) angles, Wits appraisal, facial axis angle, mandibular plane angle, upper and lower incisor inclination, and inter-incisal angle. There were statistically significant differences in cephalometric variables before and after treatment between the two groups. The percentage of normal pre-treatment measurements in the camouflage orthodontics group was 30.7%, which worsened slightly to 28.4% post-treatment. However in the group receiving surgery, this was 24.5% pre-treatment, improving to 33.5% after surgery. SNA, SNB, Wits appraisal, lower incisor inclination, and inter-incisal angle showed differences between the two groups before and after treatment. Wits appraisal, lower incisor inclination, and inter-incisal angle were indicative of one or other treatment. Upper and lower incisor decompensation in both groups did not reach ideal values, which impeded complete skeletal correction in 52% of surgical cases.
Collapse
Affiliation(s)
- P Martinez
- Stomatology Department, Faculty of Medicine and Dentistry, University of Valencia, Valencia, Spain
| | - C Bellot-Arcís
- Stomatology Department, Faculty of Medicine and Dentistry, University of Valencia, Valencia, Spain.
| | - J M Llamas
- Stomatology Department, Orthodontics, University of Seville, Seville, Spain
| | - R Cibrian
- Stomatology Department, Faculty of Medicine and Dentistry, University of Valencia, Valencia, Spain
| | - J L Gandia
- Stomatology Department, Faculty of Medicine and Dentistry, University of Valencia, Valencia, Spain
| | - V Paredes-Gallardo
- Stomatology Department, Faculty of Medicine and Dentistry, University of Valencia, Valencia, Spain
| |
Collapse
|
37
|
Garcia R, Jaegle E, Bodez V, Khamphan C, Alayrach M, Badey A, Martinez P. 27. Intra cranial hypo-fractionated radiotherapy end-to-end QA. Phys Med 2016. [DOI: 10.1016/j.ejmp.2016.11.079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
|
38
|
Jaegle E, Alayrach M, Badey A, Bodez V, Khamphan C, Martinez P, Garcia R. 9. Prostate CBCT dose optimization: From an iterative mAs reduction to a systematic exposure reduction. Phys Med 2016. [DOI: 10.1016/j.ejmp.2016.11.060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
|
39
|
Badey A, Belkacemi R, Bodez V, Khamphan C, Jaegle E, Alayrach M, Martinez P, Alfonsi M, Garcia R. 8. Validation of a “Demons” intensity-based deformable image registration algorithm using numerical phantoms and CT-patients. Phys Med 2016. [DOI: 10.1016/j.ejmp.2016.11.059] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
|
40
|
Horcajadas J, Enciso M, Sarasa J, Carrascosa J, Martinez P, Aizpurua J, Munne S. ER Map allow the reliable determination of the window of implantation in infertile women. Fertil Steril 2016. [DOI: 10.1016/j.fertnstert.2016.07.622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|
41
|
Kanu N, Grönroos E, Martinez P, Burrell RA, Yi Goh X, Bartkova J, Maya-Mendoza A, Mistrík M, Rowan AJ, Patel H, Rabinowitz A, East P, Wilson G, Santos CR, McGranahan N, Gulati S, Gerlinger M, Birkbak NJ, Joshi T, Alexandrov LB, Stratton MR, Powles T, Matthews N, Bates PA, Stewart A, Szallasi Z, Larkin J, Bartek J, Swanton C. SETD2 loss-of-function promotes renal cancer branched evolution through replication stress and impaired DNA repair. Oncogene 2015; 34:5699-708. [PMID: 25728682 PMCID: PMC4660036 DOI: 10.1038/onc.2015.24] [Citation(s) in RCA: 128] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2014] [Revised: 12/29/2014] [Accepted: 01/06/2015] [Indexed: 12/13/2022]
Abstract
Defining mechanisms that generate intratumour heterogeneity and branched evolution may inspire novel therapeutic approaches to limit tumour diversity and adaptation. SETD2 (Su(var), Enhancer of zeste, Trithorax-domain containing 2) trimethylates histone-3 lysine-36 (H3K36me3) at sites of active transcription and is mutated in diverse tumour types, including clear cell renal carcinomas (ccRCCs). Distinct SETD2 mutations have been identified in spatially separated regions in ccRCC, indicative of intratumour heterogeneity. In this study, we have addressed the consequences of SETD2 loss-of-function through an integrated bioinformatics and functional genomics approach. We find that bi-allelic SETD2 aberrations are not associated with microsatellite instability in ccRCC. SETD2 depletion in ccRCC cells revealed aberrant and reduced nucleosome compaction and chromatin association of the key replication proteins minichromosome maintenance complex component (MCM7) and DNA polymerase δ hindering replication fork progression, and failure to load lens epithelium-derived growth factor and the Rad51 homologous recombination repair factor at DNA breaks. Consistent with these data, we observe chromosomal breakpoint locations are biased away from H3K36me3 sites in SETD2 wild-type ccRCCs relative to tumours with bi-allelic SETD2 aberrations and that H3K36me3-negative ccRCCs display elevated DNA damage in vivo. These data suggest a role for SETD2 in maintaining genome integrity through nucleosome stabilization, suppression of replication stress and the coordination of DNA repair.
Collapse
Affiliation(s)
- N Kanu
- UCL Cancer Institute, Paul O'Gorman Building, London, UK
| | - E Grönroos
- Cancer Research UK London Research Institute, London, UK
| | - P Martinez
- Cancer Research UK London Research Institute, London, UK
| | - R A Burrell
- Cancer Research UK London Research Institute, London, UK
| | - X Yi Goh
- Cancer Research UK London Research Institute, London, UK
| | - J Bartkova
- Danish Cancer Society Research Center, Copenhagen, Denmark
| | - A Maya-Mendoza
- Danish Cancer Society Research Center, Copenhagen, Denmark
| | - M Mistrík
- Faculty of Medicine and Dentistry, Institute of Molecular and Translational Medicine, Palacky University, Olomouc, Czech Republic
| | - A J Rowan
- Cancer Research UK London Research Institute, London, UK
| | - H Patel
- Cancer Research UK London Research Institute, London, UK
| | - A Rabinowitz
- Cancer Research UK London Research Institute, London, UK
| | - P East
- Cancer Research UK London Research Institute, London, UK
| | - G Wilson
- Cancer Research UK London Research Institute, London, UK
| | - C R Santos
- Cancer Research UK London Research Institute, London, UK
| | - N McGranahan
- Cancer Research UK London Research Institute, London, UK
| | - S Gulati
- Cancer Research UK London Research Institute, London, UK
| | - M Gerlinger
- Cancer Research UK London Research Institute, London, UK
| | - N J Birkbak
- UCL Cancer Institute, Paul O'Gorman Building, London, UK
- Cancer Research UK London Research Institute, London, UK
- Department of Systems Biology, Center for Biological Sequence Analysis, Technical University of Denmark, Kongens Lyngby, Denmark
| | - T Joshi
- Department of Systems Biology, Center for Biological Sequence Analysis, Technical University of Denmark, Kongens Lyngby, Denmark
| | - L B Alexandrov
- Cancer Genome Project, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridgeshire, UK
| | - M R Stratton
- Cancer Genome Project, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridgeshire, UK
| | - T Powles
- Barts Cancer Institute, Experimental Cancer Medicine Centre, Queen Mary University of London, London, UK
| | - N Matthews
- Cancer Research UK London Research Institute, London, UK
| | - P A Bates
- Cancer Research UK London Research Institute, London, UK
| | - A Stewart
- Cancer Research UK London Research Institute, London, UK
| | - Z Szallasi
- Department of Systems Biology, Center for Biological Sequence Analysis, Technical University of Denmark, Kongens Lyngby, Denmark
- Children's Hospital Boston, Informatics—Enders 1506, Boston, MA, USA
| | - J Larkin
- Department of Medicine, The Royal Marsden Hospital, London, UK
| | - J Bartek
- Danish Cancer Society Research Center, Copenhagen, Denmark
- Faculty of Medicine and Dentistry, Institute of Molecular and Translational Medicine, Palacky University, Olomouc, Czech Republic
| | - C Swanton
- UCL Cancer Institute, Paul O'Gorman Building, London, UK
- Cancer Research UK London Research Institute, London, UK
| |
Collapse
|
42
|
Khamphan C, Bodez V, Jaegle E, Alayrach ME, Badey A, Martinez P, Garcia R. Evaluation of a knowledge-based planning software for head and neck volumetric modulated arc therapy. Phys Med 2015. [DOI: 10.1016/j.ejmp.2015.10.043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
|
43
|
Santos-Moreno P, Saavedra-Martinez G, Villarreal L, Gomez D, Bello-Gualtero J, Giraldo V, Martinez P, Sanchez A, Sanchez M, Uribe E, Boon M. SAT0231 Conventional Dmard Therapy and Improvement of Disease Activity in a Cohort of Rheumatoid Arthritis Patients Treated Under Treat to Target Recommendations. Ann Rheum Dis 2015. [DOI: 10.1136/annrheumdis-2015-eular.2521] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
|
44
|
Gomez D, Saavedra-Martinez G, Villarreal L, Santos-Moreno P, Bello-Gualtero J, Giraldo V, Martinez P, Sanchez A, Sanchez M, Uribe E, Boon M. SAT0108 Misdiagnosis of Rheumatoid Arthritis – The Photography. Ann Rheum Dis 2015. [DOI: 10.1136/annrheumdis-2015-eular.2532] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
|
45
|
Saavedra-Martinez G, Villarreal L, Santos-Moreno P, Gomez D, Bello-Gualtero J, Giraldo V, Martinez P, Sanchez A, Sanchez M, Uribe E, Boon M. AB1122 Better Outcomes of Disease Activity in a Large Cohort of Rheumatoid Arthritis Patients Treated Under Treat to Target Recommendations. Ann Rheum Dis 2015. [DOI: 10.1136/annrheumdis-2015-eular.2527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
|
46
|
Santos-Moreno P, Saavedra-Martinez G, Villarreal L, Gomez D, Bello-Gualtero J, Giraldo V, Martinez P, Sanchez A, Sanchez M, Uribe E, Boon M. SAT0360 Etanar – A Etanercept Biosimilar is as Effective as Adalimumab and Infliximab in a Cohort of Real-Life of Patients with Rheumatoid Arthritis. Ann Rheum Dis 2015. [DOI: 10.1136/annrheumdis-2015-eular.2508] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
|
47
|
Santos-Moreno P, Saavedra-Martinez G, Villarreal L, Gomez D, Bello-Gualtero J, Giraldo V, Martinez P, Sanchez A, Sanchez M, Uribe E, Boon M. THU0362 Costs Reduction in a Health Resource-Limited Setting Through Decreasing Number of Eligible Patients for Biological Therapy with the Implementation of the Treat to Target Recommendations. Ann Rheum Dis 2015. [DOI: 10.1136/annrheumdis-2015-eular.2519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
|
48
|
Santos-Moreno P, Saavedra-Martinez G, Villarreal L, Gomez D, Bello-Gualtero J, Giraldo V, Martinez P, Sanchez A, Sanchez M, Uribe E, Boon M. THU0485 High Costs for Health System of Misdiagnosing Osteoarthritis as Rheumatoid Arthritis. Ann Rheum Dis 2015. [DOI: 10.1136/annrheumdis-2015-eular.2529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
|
49
|
Nuciforo PG, Aura C, Holmes E, Prudkin L, Jimenez J, Martinez P, Ameels H, de la Peña L, Ellis C, Eidtmann H, Piccart-Gebhart MJ, Scaltriti M, Baselga J. Benefit to neoadjuvant anti-human epidermal growth factor receptor 2 (HER2)-targeted therapies in HER2-positive primary breast cancer is independent of phosphatase and tensin homolog deleted from chromosome 10 (PTEN) status. Ann Oncol 2015; 26:1494-500. [PMID: 25851628 DOI: 10.1093/annonc/mdv175] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2015] [Accepted: 03/20/2015] [Indexed: 01/30/2023] Open
Abstract
BACKGROUND Assessment of phosphatase and tensin homolog deleted from chromosome 10 (PTEN) might be an important tool in identifying human epidermal growth factor receptor 2 (HER2)-positive breast cancer patients unlikely to derive benefit from anti-HER2 therapies. However, studies to date have failed to demonstrate its predictive role in any treatment setting. PATIENTS AND METHODS Prospectively collected baseline core biopsies from 429 early-stage HER2-positive breast cancer patients treated with trastuzumab, lapatinib, or their combination in the Neo-ALTTO study were stained using two anti-PTEN monoclonal antibodies (CST and DAKO). The association of PTEN status and PI3K pathway activation (defined as either PTEN loss and/or PIK3CA mutation) with total pathological complete response (tpCR) at surgery, event-free survival (EFS), and overall survival (OS) was evaluated. RESULTS PTEN loss was observed in 27% and 29% of patients (all arms, n = 361 and n = 363) for CST and DAKO, respectively. PTEN loss was more frequently observed in hormone receptor (HR)-negative (33% and 36% with CST and DAKO, respectively) compared with HR-positive tumours (20% and 22% with CST and DAKO, respectively). No significant differences in tpCR rates were observed according to PTEN status. PI3K pathway activation was found in 47% and 48% of patients (all arms, n = 302 and n = 301) for CST and DAKO, respectively. Similarly, tpCR rates were not significantly different for those with or without PI3K pathway activation. Neither PTEN status nor PI3K pathway activation were predictive of tpCR, EFS, or OS, independently of treatment arm or HR status. High inter-antibody and inter-observer agreements were found (>90%). Modification of scoring variables significantly affected the correlation between PTEN and HR status but not with tpCR. CONCLUSION These data show that PTEN status determination is not a useful biomarker to predict resistance to trastuzumab and lapatinib-based therapies. The lack of standardization of PTEN status determination may influence correlations between expression and relevant clinical end points. CLINICAL TRIALS This trial is registered with ClinicalTrials.gov: NCT00553358.
Collapse
Affiliation(s)
- P G Nuciforo
- Molecular Oncology Laboratory, Vall D'Hebron Institute of Oncology, Barcelona, Spain
| | - C Aura
- Molecular Oncology Laboratory, Vall D'Hebron Institute of Oncology, Barcelona, Spain
| | - E Holmes
- Frontier Science Scotland, Kincraig, UK
| | - L Prudkin
- Molecular Oncology Laboratory, Vall D'Hebron Institute of Oncology, Barcelona, Spain
| | - J Jimenez
- Molecular Oncology Laboratory, Vall D'Hebron Institute of Oncology, Barcelona, Spain
| | - P Martinez
- Molecular Oncology Laboratory, Vall D'Hebron Institute of Oncology, Barcelona, Spain
| | - H Ameels
- BrEAST Data Centre, Jules Bordet Institute, Brussels, Belgium
| | - L de la Peña
- SOLTI Breast Cancer Research Group, Barcelona, Spain
| | - C Ellis
- GlaxoSmithKline, Collegeville, USA
| | | | | | - M Scaltriti
- Human Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York
| | - J Baselga
- Human Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York Breast Medicine Service, Department of Medicine, Memorial Sloan-Kettering Cancer Center, New York, USA
| |
Collapse
|
50
|
Cedres S, Navarro A, Martinez A, Martinez P, Ortiz C, Fariñas L, Felip E. Statin Use and Survival in Malignant Pleural Mesothelioma (MPM). Ann Oncol 2015. [DOI: 10.1093/annonc/mdv052.08] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|